Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682620 | XP_003606464.1 | 97.872 | 94 | 2 | 0 | 1 | 94 | 1 | 94 | 6.89e-61 | 190 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682620 | G7JQH1 | 97.872 | 94 | 2 | 0 | 1 | 94 | 1 | 94 | 3.29e-61 | 190 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000190 | Msa0682620 | 0.805604 | 1.231984e-49 | -8.615850e-47 |
| Msa0001780 | Msa0682620 | 0.805165 | 1.523047e-49 | -8.615850e-47 |
| Msa0003700 | Msa0682620 | 0.813266 | 2.792836e-51 | -8.615850e-47 |
| Msa0017510 | Msa0682620 | 0.864614 | 1.071177e-64 | -8.615850e-47 |
| Msa0028640 | Msa0682620 | 0.820590 | 6.329195e-53 | -8.615850e-47 |
| Msa0029880 | Msa0682620 | 0.816638 | 4.988161e-52 | -8.615850e-47 |
| Msa0029890 | Msa0682620 | 0.814318 | 1.638027e-51 | -8.615850e-47 |
| Msa0037700 | Msa0682620 | 0.813467 | 2.522497e-51 | -8.615850e-47 |
| Msa0040450 | Msa0682620 | 0.822822 | 1.928957e-53 | -8.615850e-47 |
| Msa0064560 | Msa0682620 | 0.811421 | 7.061226e-51 | -8.615850e-47 |
| Msa0077140 | Msa0682620 | 0.810219 | 1.284943e-50 | -8.615850e-47 |
| Msa0101440 | Msa0682620 | 0.802370 | 5.794612e-49 | -8.615850e-47 |
| Msa0101590 | Msa0682620 | 0.803808 | 2.921038e-49 | -8.615850e-47 |
| Msa0110970 | Msa0682620 | 0.847513 | 1.102710e-59 | -8.615850e-47 |
| Msa0608620 | Msa0682620 | 0.812040 | 5.179312e-51 | -8.615850e-47 |
| Msa0642820 | Msa0682620 | 0.809548 | 1.791729e-50 | -8.615850e-47 |
| Msa0643470 | Msa0682620 | 0.861323 | 1.112126e-63 | -8.615850e-47 |
| Msa0646090 | Msa0682620 | 0.806229 | 9.105519e-50 | -8.615850e-47 |
| Msa0648880 | Msa0682620 | 0.841955 | 3.471459e-58 | -8.615850e-47 |
| Msa0649980 | Msa0682620 | 0.807767 | 4.302599e-50 | -8.615850e-47 |
| Msa0657610 | Msa0682620 | 0.828241 | 1.002683e-54 | -8.615850e-47 |
| Msa0657970 | Msa0682620 | 0.831437 | 1.669745e-55 | -8.615850e-47 |
| Msa0658570 | Msa0682620 | 0.813205 | 2.879545e-51 | -8.615850e-47 |
| Msa0663390 | Msa0682620 | 0.800157 | 1.644007e-48 | -8.615850e-47 |
| Msa0669320 | Msa0682620 | 0.801485 | 8.806519e-49 | -8.615850e-47 |
| Msa0669440 | Msa0682620 | 0.829266 | 5.668045e-55 | -8.615850e-47 |
| Msa0682620 | Msa0682630 | 0.821303 | 4.336692e-53 | -8.615850e-47 |
| Msa0682620 | Msa0683510 | 0.803452 | 3.463462e-49 | -8.615850e-47 |
| Msa0682620 | Msa0688770 | 0.994568 | 2.510759e-208 | -8.615850e-47 |
| Msa0682620 | Msa0690520 | 0.800122 | 1.671554e-48 | -8.615850e-47 |
| Msa0682620 | Msa0691380 | 0.840610 | 7.837660e-58 | -8.615850e-47 |
| Msa0682620 | Msa0692230 | 0.806875 | 6.652201e-50 | -8.615850e-47 |
| Msa0682620 | Msa0705870 | 0.820217 | 7.707777e-53 | -8.615850e-47 |
| Msa0682620 | Msa0716760 | 0.813590 | 2.370496e-51 | -8.615850e-47 |
| Msa0682620 | Msa0722780 | 0.812082 | 5.068827e-51 | -8.615850e-47 |
| Msa0682620 | Msa0722850 | 0.813580 | 2.382264e-51 | -8.615850e-47 |
| Msa0682620 | Msa0723000 | 0.802728 | 4.887894e-49 | -8.615850e-47 |
| Msa0682620 | Msa0723990 | 0.800113 | 1.678310e-48 | -8.615850e-47 |
| Msa0682620 | Msa0756630 | -0.800640 | 1.311031e-48 | -8.615850e-47 |
| Msa0682620 | Msa0764570 | 0.810767 | 9.786455e-51 | -8.615850e-47 |
| Msa0682620 | Msa0812990 | 0.825061 | 5.755024e-54 | -8.615850e-47 |
| Msa0682620 | Msa0816150 | 0.812747 | 3.628376e-51 | -8.615850e-47 |
| Msa0682620 | Msa0824680 | 0.807874 | 4.083496e-50 | -8.615850e-47 |
| Msa0682620 | Msa0828560 | 0.802326 | 5.916695e-49 | -8.615850e-47 |
| Msa0682620 | Msa0832370 | 0.803661 | 3.133719e-49 | -8.615850e-47 |
| Msa0682620 | Msa0838580 | 0.800378 | 1.482674e-48 | -8.615850e-47 |
| Msa0682620 | Msa0843220 | 0.823286 | 1.502752e-53 | -8.615850e-47 |
| Msa0682620 | Msa0853540 | 0.841245 | 5.340912e-58 | -8.615850e-47 |
| Msa0682620 | Msa0867220 | 0.802959 | 4.380236e-49 | -8.615850e-47 |
| Msa0682620 | Msa0867890 | 0.805859 | 1.089023e-49 | -8.615850e-47 |
| Msa0682620 | Msa0880140 | 0.859778 | 3.267790e-63 | -8.615850e-47 |
| Msa0682620 | Msa0895790 | 0.811530 | 6.686273e-51 | -8.615850e-47 |
| Msa0682620 | Msa0896750 | 0.802141 | 6.459086e-49 | -8.615850e-47 |
| Msa0682620 | Msa0900180 | 0.819012 | 1.452209e-52 | -8.615850e-47 |
| Msa0682620 | Msa0908050 | 0.800063 | 1.718183e-48 | -8.615850e-47 |
| Msa0682620 | Msa0909120 | 0.835321 | 1.796370e-56 | -8.615850e-47 |
| Msa0682620 | Msa0909140 | 0.831418 | 1.687946e-55 | -8.615850e-47 |
| Msa0682620 | Msa0922410 | 0.802516 | 5.406839e-49 | -8.615850e-47 |
| Msa0682620 | Msa0959360 | 0.804899 | 1.730881e-49 | -8.615850e-47 |
| Msa0682620 | Msa0964840 | 0.812082 | 5.069892e-51 | -8.615850e-47 |
| Msa0682620 | Msa0972100 | 0.809806 | 1.576869e-50 | -8.615850e-47 |
| Msa0682620 | Msa0993290 | 0.815144 | 1.074309e-51 | -8.615850e-47 |
| Msa0682620 | Msa0993600 | 0.815128 | 1.083346e-51 | -8.615850e-47 |
| Msa0682620 | Msa1009000 | 0.800809 | 1.210805e-48 | -8.615850e-47 |
| Msa0682620 | Msa1014540 | 0.801813 | 7.541866e-49 | -8.615850e-47 |
| Msa0682620 | Msa1030970 | 0.813752 | 2.183541e-51 | -8.615850e-47 |
| Msa0682620 | Msa1057440 | 0.802957 | 4.384532e-49 | -8.615850e-47 |
| Msa0682620 | Msa1069310 | 0.804097 | 2.543462e-49 | -8.615850e-47 |
| Msa0682620 | Msa1075220 | -0.821519 | 3.867274e-53 | -8.615850e-47 |
| Msa0682620 | Msa1077180 | 0.800157 | 1.644301e-48 | -8.615850e-47 |
| Msa0682620 | Msa1078580 | -0.806209 | 9.191676e-50 | -8.615850e-47 |
| Msa0682620 | Msa1078710 | 0.808623 | 2.827168e-50 | -8.615850e-47 |
| Msa0682620 | Msa1078750 | -0.811583 | 6.509728e-51 | -8.615850e-47 |
| Msa0682620 | Msa1079590 | 0.810975 | 8.820420e-51 | -8.615850e-47 |
| Msa0682620 | Msa1082500 | 0.821767 | 3.389217e-53 | -8.615850e-47 |
| Msa0682620 | Msa1085200 | 0.828761 | 7.512814e-55 | -8.615850e-47 |
| Msa0682620 | Msa1085300 | 0.817175 | 3.779020e-52 | -8.615850e-47 |
| Msa0682620 | Msa1098560 | 0.814951 | 1.186167e-51 | -8.615850e-47 |
| Msa0682620 | Msa1111110 | 0.811367 | 7.255126e-51 | -8.615850e-47 |
| Msa0682620 | Msa1116130 | -0.814342 | 1.618035e-51 | -8.615850e-47 |
| Msa0682620 | Msa1124410 | 0.805366 | 1.382306e-49 | -8.615850e-47 |
| Msa0682620 | Msa1125000 | 0.810445 | 1.148400e-50 | -8.615850e-47 |
| Msa0682620 | Msa1133710 | 0.817094 | 3.941505e-52 | -8.615850e-47 |
| Msa0682620 | Msa1151910 | 0.810652 | 1.036148e-50 | -8.615850e-47 |
| Msa0682620 | Msa1162550 | -0.824093 | 9.726403e-54 | -8.615850e-47 |
| Msa0682620 | Msa1168160 | 0.828464 | 8.862379e-55 | -8.615850e-47 |
| Msa0682620 | Msa1186060 | 0.816546 | 5.231012e-52 | -8.615850e-47 |
| Msa0682620 | Msa1222970 | 0.847675 | 9.952668e-60 | -8.615850e-47 |
| Msa0682620 | Msa1222990 | 0.814981 | 1.167939e-51 | -8.615850e-47 |
| Msa0682620 | Msa1228190 | 0.801709 | 7.921660e-49 | -8.615850e-47 |
| Msa0682620 | Msa1228210 | 0.858612 | 7.312394e-63 | -8.615850e-47 |
| Msa0682620 | Msa1236100 | 0.801591 | 8.376484e-49 | -8.615850e-47 |
| Msa0682620 | Msa1238930 | 0.821422 | 4.072853e-53 | -8.615850e-47 |
| Msa0682620 | Msa1242220 | 0.849062 | 4.114803e-60 | -8.615850e-47 |
| Msa0682620 | Msa1242230 | 0.848423 | 6.186807e-60 | -8.615850e-47 |
| Msa0682620 | Msa1242240 | 0.836047 | 1.176455e-56 | -8.615850e-47 |
| Msa0682620 | Msa1244250 | 0.809824 | 1.563529e-50 | -8.615850e-47 |
| Msa0682620 | Msa1264020 | 0.815634 | 8.359814e-52 | -8.615850e-47 |
| Msa0682620 | Msa1271280 | 0.840725 | 7.314665e-58 | -8.615850e-47 |
| Msa0682620 | Msa1271290 | 0.832892 | 7.293351e-56 | -8.615850e-47 |
| Msa0682620 | Msa1271300 | 0.855880 | 4.687239e-62 | -8.615850e-47 |
| Msa0682620 | Msa1278840 | 0.809275 | 2.050862e-50 | -8.615850e-47 |
| Msa0682620 | Msa1283840 | 0.822787 | 1.964935e-53 | -8.615850e-47 |
| Msa0682620 | Msa1283860 | 0.861775 | 8.092298e-64 | -8.615850e-47 |
| Msa0682620 | Msa1284260 | 0.833756 | 4.440906e-56 | -8.615850e-47 |
| Msa0682620 | Msa1293770 | 0.808544 | 2.939368e-50 | -8.615850e-47 |
| Msa0682620 | Msa1305340 | 0.805294 | 1.431112e-49 | -8.615850e-47 |
| Msa0682620 | Msa1308380 | 0.866243 | 3.287885e-65 | -8.615850e-47 |
| Msa0682620 | Msa1313150 | 0.806962 | 6.376332e-50 | -8.615850e-47 |
| Msa0682620 | Msa1318240 | 0.813451 | 2.543021e-51 | -8.615850e-47 |
| Msa0682620 | Msa1320740 | 0.800759 | 1.239342e-48 | -8.615850e-47 |
| Msa0682620 | Msa1322860 | 0.847482 | 1.124454e-59 | -8.615850e-47 |
| Msa0682620 | Msa1322890 | 0.838575 | 2.650507e-57 | -8.615850e-47 |
| Msa0682620 | Msa1324500 | 0.810212 | 1.289867e-50 | -8.615850e-47 |
| Msa0682620 | Msa1327050 | 0.840818 | 6.915999e-58 | -8.615850e-47 |
| Msa0682620 | Msa1367080 | 0.836178 | 1.089532e-56 | -8.615850e-47 |
| Msa0682620 | Msa1374040 | 0.809909 | 1.498927e-50 | -8.615850e-47 |
| Msa0682620 | Msa1374550 | 0.823685 | 1.212540e-53 | -8.615850e-47 |
| Msa0682620 | Msa1376890 | 0.807550 | 4.785640e-50 | -8.615850e-47 |
| Msa0682620 | Msa1378760 | 0.814262 | 1.684895e-51 | -8.615850e-47 |
| Msa0682620 | Msa1382540 | 0.805985 | 1.024704e-49 | -8.615850e-47 |
| Msa0682620 | Msa1384350 | 0.816254 | 6.078987e-52 | -8.615850e-47 |
| Msa0682620 | Msa1390050 | 0.806813 | 6.855409e-50 | -8.615850e-47 |
| Msa0682620 | Msa1399550 | 0.811343 | 7.342470e-51 | -8.615850e-47 |
| Msa0682620 | Msa1402730 | 0.808235 | 3.421003e-50 | -8.615850e-47 |
| Msa0682620 | Msa1411070 | 0.840353 | 9.151063e-58 | -8.615850e-47 |
| Msa0682620 | Msa1427760 | 0.807406 | 5.133536e-50 | -8.615850e-47 |
| Msa0682620 | Msa1429150 | 0.824492 | 7.840783e-54 | -8.615850e-47 |
| Msa0682620 | Msa1438250 | 0.810978 | 8.809356e-51 | -8.615850e-47 |
| Msa0682620 | Msa1445610 | -0.823355 | 1.448407e-53 | -8.615850e-47 |
| Msa0682620 | Msa1454120 | 0.806495 | 8.000164e-50 | -8.615850e-47 |
| Msa0682620 | Msa1457910 | 0.800953 | 1.131404e-48 | -8.615850e-47 |
| Msa0682620 | Msa1460240 | 0.810309 | 1.228791e-50 | -8.615850e-47 |
| Msa0682620 | Msa1460890 | 0.806161 | 9.407562e-50 | -8.615850e-47 |
| Msa0682620 | Msa1464940 | 0.810279 | 1.247343e-50 | -8.615850e-47 |
| Msa0133130 | Msa0682620 | 0.808341 | 3.248696e-50 | -8.615850e-47 |
| Msa0140780 | Msa0682620 | 0.809085 | 2.252570e-50 | -8.615850e-47 |
| Msa0145440 | Msa0682620 | 0.801325 | 9.496595e-49 | -8.615850e-47 |
| Msa0146260 | Msa0682620 | 0.807556 | 4.770926e-50 | -8.615850e-47 |
| Msa0157290 | Msa0682620 | 0.864949 | 8.413983e-65 | -8.615850e-47 |
| Msa0169860 | Msa0682620 | 0.845129 | 4.921966e-59 | -8.615850e-47 |
| Msa0169870 | Msa0682620 | 0.809761 | 1.612893e-50 | -8.615850e-47 |
| Msa0175390 | Msa0682620 | 0.800813 | 1.208675e-48 | -8.615850e-47 |
| Msa0195000 | Msa0682620 | 0.804654 | 1.947047e-49 | -8.615850e-47 |
| Msa0197660 | Msa0682620 | 0.810936 | 8.997646e-51 | -8.615850e-47 |
| Msa0200260 | Msa0682620 | 0.827567 | 1.456588e-54 | -8.615850e-47 |
| Msa0202950 | Msa0682620 | 0.809290 | 2.035669e-50 | -8.615850e-47 |
| Msa0203030 | Msa0682620 | 0.807791 | 4.252812e-50 | -8.615850e-47 |
| Msa0215320 | Msa0682620 | -0.800645 | 1.307932e-48 | -8.615850e-47 |
| Msa0220740 | Msa0682620 | 0.812810 | 3.514862e-51 | -8.615850e-47 |
| Msa0221060 | Msa0682620 | 0.801147 | 1.032753e-48 | -8.615850e-47 |
| Msa0221290 | Msa0682620 | 0.838941 | 2.131551e-57 | -8.615850e-47 |
| Msa0231650 | Msa0682620 | 0.801069 | 1.071334e-48 | -8.615850e-47 |
| Msa0234600 | Msa0682620 | 0.829764 | 4.289443e-55 | -8.615850e-47 |
| Msa0371540 | Msa0682620 | 0.803206 | 3.893742e-49 | -8.615850e-47 |
| Msa0373930 | Msa0682620 | 0.817617 | 3.005730e-52 | -8.615850e-47 |
| Msa0380740 | Msa0682620 | 0.817011 | 4.113884e-52 | -8.615850e-47 |
| Msa0388960 | Msa0682620 | 0.808904 | 2.461970e-50 | -8.615850e-47 |
| Msa0389340 | Msa0682620 | 0.801230 | 9.932043e-49 | -8.615850e-47 |
| Msa0392420 | Msa0682620 | 0.804312 | 2.294998e-49 | -8.615850e-47 |
| Msa0392460 | Msa0682620 | 0.802609 | 5.171885e-49 | -8.615850e-47 |
| Msa0395790 | Msa0682620 | 0.816508 | 5.334782e-52 | -8.615850e-47 |
| Msa0398710 | Msa0682620 | 0.832650 | 8.374748e-56 | -8.615850e-47 |
| Msa0410650 | Msa0682620 | 0.826537 | 2.569834e-54 | -8.615850e-47 |
| Msa0417270 | Msa0682620 | 0.802309 | 5.963209e-49 | -8.615850e-47 |
| Msa0435390 | Msa0682620 | 0.802522 | 5.392093e-49 | -8.615850e-47 |
| Msa0440750 | Msa0682620 | 0.801129 | 1.041748e-48 | -8.615850e-47 |
| Msa0453330 | Msa0682620 | 0.814049 | 1.877779e-51 | -8.615850e-47 |
| Msa0461720 | Msa0682620 | 0.819669 | 1.028686e-52 | -8.615850e-47 |
| Msa0465910 | Msa0682620 | 0.817939 | 2.542450e-52 | -8.615850e-47 |
| Msa0465950 | Msa0682620 | 0.838214 | 3.284273e-57 | -8.615850e-47 |
| Msa0466390 | Msa0682620 | 0.813859 | 2.067727e-51 | -8.615850e-47 |
| Msa0480980 | Msa0682620 | 0.828179 | 1.038149e-54 | -8.615850e-47 |
| Msa0238890 | Msa0682620 | 0.815995 | 6.945742e-52 | -8.615850e-47 |
| Msa0239800 | Msa0682620 | 0.810103 | 1.361125e-50 | -8.615850e-47 |
| Msa0243100 | Msa0682620 | 0.842222 | 2.949731e-58 | -8.615850e-47 |
| Msa0261340 | Msa0682620 | 0.813146 | 2.966538e-51 | -8.615850e-47 |
| Msa0284420 | Msa0682620 | 0.816665 | 4.919494e-52 | -8.615850e-47 |
| Msa0287650 | Msa0682620 | 0.832911 | 7.212195e-56 | -8.615850e-47 |
| Msa0297740 | Msa0682620 | 0.812917 | 3.331248e-51 | -8.615850e-47 |
| Msa0300610 | Msa0682620 | 0.804053 | 2.598631e-49 | -8.615850e-47 |
| Msa0306210 | Msa0682620 | -0.802612 | 5.166048e-49 | -8.615850e-47 |
| Msa0308830 | Msa0682620 | 0.809867 | 1.530132e-50 | -8.615850e-47 |
| Msa0313410 | Msa0682620 | 0.815797 | 7.689760e-52 | -8.615850e-47 |
| Msa0317510 | Msa0682620 | 0.818746 | 1.668994e-52 | -8.615850e-47 |
| Msa0323610 | Msa0682620 | 0.805293 | 1.431734e-49 | -8.615850e-47 |
| Msa0337860 | Msa0682620 | 0.810016 | 1.421338e-50 | -8.615850e-47 |
| Msa0338110 | Msa0682620 | 0.816322 | 5.870193e-52 | -8.615850e-47 |
| Msa0340450 | Msa0682620 | 0.810257 | 1.261333e-50 | -8.615850e-47 |
| Msa0345330 | Msa0682620 | 0.801055 | 1.078369e-48 | -8.615850e-47 |
| Msa0345970 | Msa0682620 | 0.829155 | 6.029515e-55 | -8.615850e-47 |
| Msa0357340 | Msa0682620 | 0.816838 | 4.498047e-52 | -8.615850e-47 |
| Msa0362780 | Msa0682620 | 0.827688 | 1.362674e-54 | -8.615850e-47 |
| Msa0487570 | Msa0682620 | 0.803710 | 3.060786e-49 | -8.615850e-47 |
| Msa0487630 | Msa0682620 | 0.803514 | 3.361286e-49 | -8.615850e-47 |
| Msa0495320 | Msa0682620 | 0.816007 | 6.902633e-52 | -8.615850e-47 |
| Msa0500360 | Msa0682620 | 0.839877 | 1.218404e-57 | -8.615850e-47 |
| Msa0507680 | Msa0682620 | 0.823141 | 1.625210e-53 | -8.615850e-47 |
| Msa0509610 | Msa0682620 | 0.819571 | 1.083054e-52 | -8.615850e-47 |
| Msa0514030 | Msa0682620 | 0.806350 | 8.583448e-50 | -8.615850e-47 |
| Msa0517340 | Msa0682620 | 0.813503 | 2.476752e-51 | -8.615850e-47 |
| Msa0523460 | Msa0682620 | 0.848354 | 6.464569e-60 | -8.615850e-47 |
| Msa0533070 | Msa0682620 | 0.813188 | 2.904366e-51 | -8.615850e-47 |
| Msa0535040 | Msa0682620 | 0.824767 | 6.754215e-54 | -8.615850e-47 |
| Msa0546790 | Msa0682620 | 0.801293 | 9.639117e-49 | -8.615850e-47 |
| Msa0547140 | Msa0682620 | 0.802324 | 5.921636e-49 | -8.615850e-47 |
| Msa0547490 | Msa0682620 | 0.913857 | 3.780308e-84 | -8.615850e-47 |
| Msa0555020 | Msa0682620 | 0.820618 | 6.237468e-53 | -8.615850e-47 |
| Msa0566500 | Msa0682620 | -0.802518 | 5.399901e-49 | -8.615850e-47 |
| Msa0571140 | Msa0682620 | 0.815332 | 9.761695e-52 | -8.615850e-47 |
| Msa0574890 | Msa0682620 | 0.803497 | 3.389946e-49 | -8.615850e-47 |
| Msa0581760 | Msa0682620 | 0.828614 | 8.149919e-55 | -8.615850e-47 |
| Msa0585230 | Msa0682620 | 0.803902 | 2.792754e-49 | -8.615850e-47 |
| Msa0597330 | Msa0682620 | 0.819246 | 1.284575e-52 | -8.615850e-47 |
| Msa0599890 | Msa0682620 | 0.801566 | 8.476410e-49 | -8.615850e-47 |
| Msa0601850 | Msa0682620 | 0.801180 | 1.016704e-48 | -8.615850e-47 |
| Msa0602240 | Msa0682620 | 0.926944 | 2.334784e-91 | -8.615850e-47 |
| Msa0602250 | Msa0682620 | 0.929685 | 4.874596e-93 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682620 | MtrunA17_Chr4g0029791 | 97.872 | 94 | 2 | 0 | 1 | 94 | 1 | 94 | 6.33e-65 | 190 |
| Msa0682620 | MtrunA17_Chr2g0326261 | 45.361 | 97 | 27 | 4 | 1 | 94 | 1 | 74 | 1.80e-11 | 54.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682620 | AT5G60400.3 | 40.449 | 89 | 51 | 1 | 6 | 94 | 5 | 91 | 9.26e-12 | 56.2 |
Find 24 sgRNAs with CRISPR-Local
Find 80 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGTTCCTCTCTGTCTTTC+TGG | 0.075036 | 4_4:-44448771 | Msa0682620:CDS |
| AAAATCAAATATGCATATTT+TGG | 0.124229 | 4_4:-44448170 | Msa0682620:three_prime_UTR |
| GTTTAACATGGACTGCATTT+TGG | 0.222924 | 4_4:+44448809 | None:intergenic |
| ACTTACTAGAATGTTAATTT+AGG | 0.250075 | 4_4:+44448274 | None:intergenic |
| AAAAGCTGCTTAGTTAGATT+TGG | 0.304540 | 4_4:-44448407 | Msa0682620:exon |
| CGAAGTTTCACCCTATTCAT+TGG | 0.395651 | 4_4:+44448227 | None:intergenic |
| TGATGATGATCTTGAAGATC+TGG | 0.442771 | 4_4:-44448479 | Msa0682620:CDS |
| TTCGTACGGACATATTTGTA+TGG | 0.453259 | 4_4:-44448208 | Msa0682620:three_prime_UTR |
| AGTGCATGCAAATCAAGAAA+AGG | 0.472454 | 4_4:-44448545 | Msa0682620:CDS |
| ACTGATGTGACCAATGAATA+GGG | 0.474910 | 4_4:-44448237 | Msa0682620:three_prime_UTR |
| AACTGATGTGACCAATGAAT+AGG | 0.478716 | 4_4:-44448238 | Msa0682620:three_prime_UTR |
| TTAAACCTTCGTGCTACTCA+TGG | 0.498021 | 4_4:-44448792 | Msa0682620:CDS |
| ACCGAAGAAGAAAAGATATG+AGG | 0.524381 | 4_4:-44448579 | Msa0682620:CDS |
| GTGCATGCAAATCAAGAAAA+GGG | 0.524986 | 4_4:-44448544 | Msa0682620:CDS |
| CTGTCTCTTACTTATCTCAC+AGG | 0.529035 | 4_4:-44448439 | Msa0682620:CDS |
| TACTCTTTGGAAAGAGCAAG+AGG | 0.575505 | 4_4:+44448738 | None:intergenic |
| AACATTCTAGTAAGTTCAGA+CGG | 0.600784 | 4_4:-44448266 | Msa0682620:three_prime_UTR |
| TTTGGAAAGAGCAAGAGGGT+TGG | 0.601098 | 4_4:+44448743 | None:intergenic |
| AAAAGGATGGGAAATAAAGG+AGG | 0.624688 | 4_4:+44448860 | None:intergenic |
| GAATAGGGTGAAACTTCGTA+CGG | 0.636390 | 4_4:-44448222 | Msa0682620:three_prime_UTR |
| ACTCTTTGGAAAGAGCAAGA+GGG | 0.667434 | 4_4:+44448739 | None:intergenic |
| AGTAGCACGAAGGTTTAACA+TGG | 0.672060 | 4_4:+44448797 | None:intergenic |
| GTGATTCCAGAAAGACAGAG+AGG | 0.712435 | 4_4:+44448765 | None:intergenic |
| GAACTCCATGAGTAGCACGA+AGG | 0.732005 | 4_4:+44448787 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATTAATTTACTCTT+TGG | + | chr4_4:44448380-44448399 | None:intergenic | 10.0% |
| !! | AAATAAATTAATTTACTCTT+TGG | + | chr4_4:44448380-44448399 | None:intergenic | 10.0% |
| !!! | AAAATCAAATATGCATATTT+TGG | - | chr4_4:44448932-44448951 | Msa0682620:five_prime_UTR | 15.0% |
| !!! | AAAATCAAATATGCATATTT+TGG | - | chr4_4:44448932-44448951 | Msa0682620:five_prime_UTR | 15.0% |
| !! | TGATATATGTTTGAATTTGA+TGG | - | chr4_4:44448481-44448500 | Msa0682620:CDS | 20.0% |
| !! | ACTTACTAGAATGTTAATTT+AGG | + | chr4_4:44448831-44448850 | None:intergenic | 20.0% |
| !!! | ATGCATATTTGATTTTGATT+TGG | + | chr4_4:44448928-44448947 | None:intergenic | 20.0% |
| !! | TGATATATGTTTGAATTTGA+TGG | - | chr4_4:44448481-44448500 | Msa0682620:CDS | 20.0% |
| !! | ACTTACTAGAATGTTAATTT+AGG | + | chr4_4:44448831-44448850 | None:intergenic | 20.0% |
| !!! | ATGCATATTTGATTTTGATT+TGG | + | chr4_4:44448928-44448947 | None:intergenic | 20.0% |
| !! | TTTTCTAGGTAAAGGAAAAA+AGG | + | chr4_4:44448262-44448281 | None:intergenic | 25.0% |
| !!! | GTTTTGTTTTTTCTAGGTAA+AGG | + | chr4_4:44448270-44448289 | None:intergenic | 25.0% |
| !!! | TGGTTTGTTTTGTTTTTTCT+AGG | + | chr4_4:44448276-44448295 | None:intergenic | 25.0% |
| !! | TCAAAGAAACAATGATTTTG+TGG | - | chr4_4:44448590-44448609 | Msa0682620:CDS | 25.0% |
| !! | TCTAAATCACTTTCATTTTC+TGG | - | chr4_4:44448732-44448751 | Msa0682620:intron | 25.0% |
| !! | TTTTCTAGGTAAAGGAAAAA+AGG | + | chr4_4:44448262-44448281 | None:intergenic | 25.0% |
| !!! | GTTTTGTTTTTTCTAGGTAA+AGG | + | chr4_4:44448270-44448289 | None:intergenic | 25.0% |
| !!! | TGGTTTGTTTTGTTTTTTCT+AGG | + | chr4_4:44448276-44448295 | None:intergenic | 25.0% |
| !! | TCAAAGAAACAATGATTTTG+TGG | - | chr4_4:44448590-44448609 | Msa0682620:CDS | 25.0% |
| !! | TCTAAATCACTTTCATTTTC+TGG | - | chr4_4:44448732-44448751 | Msa0682620:intron | 25.0% |
| GAAAAAAGGATGGGAAATAA+AGG | + | chr4_4:44448248-44448267 | None:intergenic | 30.0% | |
| TAGGTAAAGGAAAAAAGGAT+GGG | + | chr4_4:44448257-44448276 | None:intergenic | 30.0% | |
| ! | TCCTCATATCTTTTCTTCTT+CGG | + | chr4_4:44448527-44448546 | None:intergenic | 30.0% |
| ! | AATGATTTTGTGGAGATGAA+AGG | - | chr4_4:44448600-44448619 | Msa0682620:intron | 30.0% |
| AAAAGCTGCTTAGTTAGATT+TGG | - | chr4_4:44448695-44448714 | Msa0682620:intron | 30.0% | |
| AACATTCTAGTAAGTTCAGA+CGG | - | chr4_4:44448836-44448855 | Msa0682620:five_prime_UTR | 30.0% | |
| GAAAAAAGGATGGGAAATAA+AGG | + | chr4_4:44448248-44448267 | None:intergenic | 30.0% | |
| TAGGTAAAGGAAAAAAGGAT+GGG | + | chr4_4:44448257-44448276 | None:intergenic | 30.0% | |
| ! | TCCTCATATCTTTTCTTCTT+CGG | + | chr4_4:44448527-44448546 | None:intergenic | 30.0% |
| ! | AATGATTTTGTGGAGATGAA+AGG | - | chr4_4:44448600-44448619 | Msa0682620:intron | 30.0% |
| AAAAGCTGCTTAGTTAGATT+TGG | - | chr4_4:44448695-44448714 | Msa0682620:intron | 30.0% | |
| AACATTCTAGTAAGTTCAGA+CGG | - | chr4_4:44448836-44448855 | Msa0682620:five_prime_UTR | 30.0% | |
| AAAAGGATGGGAAATAAAGG+AGG | + | chr4_4:44448245-44448264 | None:intergenic | 35.0% | |
| CTAGGTAAAGGAAAAAAGGA+TGG | + | chr4_4:44448258-44448277 | None:intergenic | 35.0% | |
| !! | GTTTAACATGGACTGCATTT+TGG | + | chr4_4:44448296-44448315 | None:intergenic | 35.0% |
| GTGAGATCATAGATCAAAAG+AGG | + | chr4_4:44448422-44448441 | None:intergenic | 35.0% | |
| !! | ATGTTTGAATTTGATGGTGC+AGG | - | chr4_4:44448487-44448506 | Msa0682620:CDS | 35.0% |
| ACCGAAGAAGAAAAGATATG+AGG | - | chr4_4:44448523-44448542 | Msa0682620:CDS | 35.0% | |
| AGTGCATGCAAATCAAGAAA+AGG | - | chr4_4:44448557-44448576 | Msa0682620:CDS | 35.0% | |
| GTGCATGCAAATCAAGAAAA+GGG | - | chr4_4:44448558-44448577 | Msa0682620:CDS | 35.0% | |
| ! | TGATGATGATCTTGAAGATC+TGG | - | chr4_4:44448623-44448642 | Msa0682620:intron | 35.0% |
| AACTGATGTGACCAATGAAT+AGG | - | chr4_4:44448864-44448883 | Msa0682620:five_prime_UTR | 35.0% | |
| ACTGATGTGACCAATGAATA+GGG | - | chr4_4:44448865-44448884 | Msa0682620:five_prime_UTR | 35.0% | |
| TTCGTACGGACATATTTGTA+TGG | - | chr4_4:44448894-44448913 | Msa0682620:five_prime_UTR | 35.0% | |
| AAAAGGATGGGAAATAAAGG+AGG | + | chr4_4:44448245-44448264 | None:intergenic | 35.0% | |
| CTAGGTAAAGGAAAAAAGGA+TGG | + | chr4_4:44448258-44448277 | None:intergenic | 35.0% | |
| !! | GTTTAACATGGACTGCATTT+TGG | + | chr4_4:44448296-44448315 | None:intergenic | 35.0% |
| GTGAGATCATAGATCAAAAG+AGG | + | chr4_4:44448422-44448441 | None:intergenic | 35.0% | |
| !! | ATGTTTGAATTTGATGGTGC+AGG | - | chr4_4:44448487-44448506 | Msa0682620:CDS | 35.0% |
| ACCGAAGAAGAAAAGATATG+AGG | - | chr4_4:44448523-44448542 | Msa0682620:CDS | 35.0% | |
| AGTGCATGCAAATCAAGAAA+AGG | - | chr4_4:44448557-44448576 | Msa0682620:CDS | 35.0% | |
| GTGCATGCAAATCAAGAAAA+GGG | - | chr4_4:44448558-44448577 | Msa0682620:CDS | 35.0% | |
| ! | TGATGATGATCTTGAAGATC+TGG | - | chr4_4:44448623-44448642 | Msa0682620:intron | 35.0% |
| AACTGATGTGACCAATGAAT+AGG | - | chr4_4:44448864-44448883 | Msa0682620:five_prime_UTR | 35.0% | |
| ACTGATGTGACCAATGAATA+GGG | - | chr4_4:44448865-44448884 | Msa0682620:five_prime_UTR | 35.0% | |
| TTCGTACGGACATATTTGTA+TGG | - | chr4_4:44448894-44448913 | Msa0682620:five_prime_UTR | 35.0% | |
| AGTAGCACGAAGGTTTAACA+TGG | + | chr4_4:44448308-44448327 | None:intergenic | 40.0% | |
| ! | TTAAACCTTCGTGCTACTCA+TGG | - | chr4_4:44448310-44448329 | Msa0682620:three_prime_UTR | 40.0% |
| ! | ACTCTTTGGAAAGAGCAAGA+GGG | + | chr4_4:44448366-44448385 | None:intergenic | 40.0% |
| ! | TACTCTTTGGAAAGAGCAAG+AGG | + | chr4_4:44448367-44448386 | None:intergenic | 40.0% |
| !! | TTGAATTTGATGGTGCAGGA+TGG | - | chr4_4:44448491-44448510 | Msa0682620:CDS | 40.0% |
| CTGTCTCTTACTTATCTCAC+AGG | - | chr4_4:44448663-44448682 | Msa0682620:intron | 40.0% | |
| CGAAGTTTCACCCTATTCAT+TGG | + | chr4_4:44448878-44448897 | None:intergenic | 40.0% | |
| GAATAGGGTGAAACTTCGTA+CGG | - | chr4_4:44448880-44448899 | Msa0682620:five_prime_UTR | 40.0% | |
| AGTAGCACGAAGGTTTAACA+TGG | + | chr4_4:44448308-44448327 | None:intergenic | 40.0% | |
| ! | TTAAACCTTCGTGCTACTCA+TGG | - | chr4_4:44448310-44448329 | Msa0682620:three_prime_UTR | 40.0% |
| ! | ACTCTTTGGAAAGAGCAAGA+GGG | + | chr4_4:44448366-44448385 | None:intergenic | 40.0% |
| ! | TACTCTTTGGAAAGAGCAAG+AGG | + | chr4_4:44448367-44448386 | None:intergenic | 40.0% |
| !! | TTGAATTTGATGGTGCAGGA+TGG | - | chr4_4:44448491-44448510 | Msa0682620:CDS | 40.0% |
| CTGTCTCTTACTTATCTCAC+AGG | - | chr4_4:44448663-44448682 | Msa0682620:intron | 40.0% | |
| CGAAGTTTCACCCTATTCAT+TGG | + | chr4_4:44448878-44448897 | None:intergenic | 40.0% | |
| GAATAGGGTGAAACTTCGTA+CGG | - | chr4_4:44448880-44448899 | Msa0682620:five_prime_UTR | 40.0% | |
| GTGATTCCAGAAAGACAGAG+AGG | + | chr4_4:44448340-44448359 | None:intergenic | 45.0% | |
| TTTGGAAAGAGCAAGAGGGT+TGG | + | chr4_4:44448362-44448381 | None:intergenic | 45.0% | |
| GTGATTCCAGAAAGACAGAG+AGG | + | chr4_4:44448340-44448359 | None:intergenic | 45.0% | |
| TTTGGAAAGAGCAAGAGGGT+TGG | + | chr4_4:44448362-44448381 | None:intergenic | 45.0% | |
| GAACTCCATGAGTAGCACGA+AGG | + | chr4_4:44448318-44448337 | None:intergenic | 50.0% | |
| GGAGTTCCTCTCTGTCTTTC+TGG | - | chr4_4:44448331-44448350 | Msa0682620:three_prime_UTR | 50.0% | |
| GAACTCCATGAGTAGCACGA+AGG | + | chr4_4:44448318-44448337 | None:intergenic | 50.0% | |
| GGAGTTCCTCTCTGTCTTTC+TGG | - | chr4_4:44448331-44448350 | Msa0682620:three_prime_UTR | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 44448168 | 44448956 | 44448168 | ID=Msa0682620;Name=Msa0682620 |
| chr4_4 | mRNA | 44448168 | 44448956 | 44448168 | ID=Msa0682620-mRNA-1;Parent=Msa0682620;Name=Msa0682620-mRNA-1;_AED=0.00;_eAED=0.00;_QI=130|1|1|1|1|1|2|249|94 |
| chr4_4 | exon | 44448168 | 44448615 | 44448168 | ID=Msa0682620-mRNA-1:exon:10739;Parent=Msa0682620-mRNA-1 |
| chr4_4 | exon | 44448741 | 44448956 | 44448741 | ID=Msa0682620-mRNA-1:exon:10738;Parent=Msa0682620-mRNA-1 |
| chr4_4 | five_prime_UTR | 44448827 | 44448956 | 44448827 | ID=Msa0682620-mRNA-1:five_prime_utr;Parent=Msa0682620-mRNA-1 |
| chr4_4 | CDS | 44448741 | 44448826 | 44448741 | ID=Msa0682620-mRNA-1:cds;Parent=Msa0682620-mRNA-1 |
| chr4_4 | CDS | 44448417 | 44448615 | 44448417 | ID=Msa0682620-mRNA-1:cds;Parent=Msa0682620-mRNA-1 |
| chr4_4 | three_prime_UTR | 44448168 | 44448416 | 44448168 | ID=Msa0682620-mRNA-1:three_prime_utr;Parent=Msa0682620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
