AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0645500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0645500 MtrunA17_Chr4g0033331 70.261 575 105 7 1 560 1 524 0.0 758
Msa0645500 MtrunA17_Chr6g0482131 55.814 516 187 8 40 551 35 513 0.0 568
Msa0645500 MtrunA17_Chr4g0033201 50.602 581 163 8 12 548 10 510 0.0 546
Msa0645500 MtrunA17_Chr6g0482081 55.447 514 187 5 40 548 35 511 0.0 545
Msa0645500 MtrunA17_Chr4g0033321 75.931 349 36 5 5 309 1 345 0.0 525
Msa0645500 MtrunA17_Chr4g0033321 86.577 149 20 0 412 560 371 519 1.10e-85 275
Msa0645500 MtrunA17_Chr4g0033401 74.785 349 41 4 5 309 1 346 0.0 521
Msa0645500 MtrunA17_Chr4g0033401 86.577 149 20 0 412 560 372 520 2.02e-85 274
Msa0645500 MtrunA17_Chr4g0033271 49.315 584 171 13 10 548 6 509 1.82e-176 508
Msa0645500 MtrunA17_Chr2g0329191 47.772 561 163 11 36 548 29 507 8.60e-166 481
Msa0645500 MtrunA17_Chr4g0033311 62.890 353 85 4 1 309 1 351 2.46e-154 452
Msa0645500 MtrunA17_Chr4g0033311 75.352 142 35 0 416 557 381 522 1.96e-71 238
Msa0645500 MtrunA17_Chr3g0088441 62.500 352 85 5 3 309 1 350 3.24e-149 439
Msa0645500 MtrunA17_Chr3g0088441 72.535 142 39 0 416 557 380 521 1.12e-69 233
Msa0645500 MtrunA17_Chr4g0033191 62.461 317 75 3 37 309 39 355 6.20e-136 405
Msa0645500 MtrunA17_Chr4g0033191 66.917 133 44 0 416 548 385 517 2.23e-56 197
Msa0645500 MtrunA17_Chr2g0329201 60.580 345 88 5 9 309 3 343 2.20e-135 403
Msa0645500 MtrunA17_Chr2g0329201 63.889 144 52 0 405 548 362 505 2.58e-58 202
Msa0645500 MtrunA17_Chr6g0482071 57.550 351 100 5 3 309 4 349 1.28e-128 386
Msa0645500 MtrunA17_Chr6g0482071 63.699 146 51 1 410 555 373 516 1.58e-55 195
Msa0645500 MtrunA17_Chr4g0042171 42.610 521 256 10 40 555 23 505 1.98e-127 383
Msa0645500 MtrunA17_Chr4g0033341 55.394 343 103 5 12 309 42 379 3.40e-125 378
Msa0645500 MtrunA17_Chr4g0033341 66.165 133 45 0 416 548 409 541 2.95e-57 200
Msa0645500 MtrunA17_Chr4g0010501 67.965 231 73 1 40 270 23 252 9.35e-113 344
Msa0645500 MtrunA17_Chr4g0010501 60.432 139 51 1 410 548 358 492 1.32e-47 173
Msa0645500 MtrunA17_Chr2g0329321 52.125 353 96 6 1 309 1 324 2.54e-112 343
Msa0645500 MtrunA17_Chr2g0329321 64.964 137 48 0 412 548 350 486 2.31e-58 202
Msa0645500 MtrunA17_Chr2g0317821 39.080 522 280 12 40 560 31 515 1.54e-110 340
Msa0645500 MtrunA17_Chr4g0033261 63.359 262 67 3 6 266 7 240 1.51e-105 326
Msa0645500 MtrunA17_Chr4g0033261 61.745 149 57 0 403 551 346 494 4.76e-57 199
Msa0645500 MtrunA17_Chr3g0087261 60.700 257 96 3 13 269 11 262 1.67e-104 323
Msa0645500 MtrunA17_Chr3g0087261 50.376 133 66 0 416 548 375 507 2.66e-37 144
Msa0645500 MtrunA17_Chr5g0428831 38.740 524 253 15 36 548 22 488 2.17e-103 321
Msa0645500 MtrunA17_Chr1g0195611 39.122 524 250 17 36 548 22 487 1.08e-100 314
Msa0645500 MtrunA17_Chr4g0033231 52.548 314 79 4 40 309 40 327 1.21e-100 313
Msa0645500 MtrunA17_Chr4g0033231 64.539 141 50 0 408 548 351 491 2.65e-57 199
Msa0645500 MtrunA17_Chr3g0087271 59.438 249 93 4 9 257 11 251 1.33e-98 308
Msa0645500 MtrunA17_Chr3g0087271 48.120 133 69 0 416 548 376 508 1.82e-34 136
Msa0645500 MtrunA17_Chr4g0043091 49.524 315 112 5 39 309 26 337 4.98e-98 306
Msa0645500 MtrunA17_Chr4g0043091 50.769 130 64 0 419 548 372 501 4.97e-35 138
Msa0645500 MtrunA17_Chr5g0430451 59.926 272 81 2 1 272 1 244 5.66e-98 306
Msa0645500 MtrunA17_Chr5g0430451 65.926 135 46 0 414 548 362 496 1.96e-53 189
Msa0645500 MtrunA17_Chr5g0418871 50.680 294 98 5 60 309 2 292 1.05e-91 285
Msa0645500 MtrunA17_Chr4g0006111 57.676 241 76 3 30 270 54 268 8.77e-89 283
Msa0645500 MtrunA17_Chr4g0006111 64.394 132 46 1 417 548 393 523 6.79e-52 185
Msa0645500 MtrunA17_Chr7g0242691 41.972 355 149 6 1 311 1 342 3.99e-87 279
Msa0645500 MtrunA17_Chr7g0242691 37.288 118 67 2 435 551 385 496 1.18e-14 76.6
Msa0645500 MtrunA17_Chr7g0242681 56.034 232 91 3 41 268 38 262 1.18e-85 275
Msa0645500 MtrunA17_Chr7g0242681 36.364 121 69 3 432 551 389 502 1.22e-12 70.5
Msa0645500 MtrunA17_Chr4g0006971 57.205 229 95 2 40 268 26 251 2.45e-84 271
Msa0645500 MtrunA17_Chr4g0006971 32.836 134 83 2 425 557 371 498 3.40e-13 72.0
Msa0645500 MtrunA17_Chr6g0482941 48.519 270 135 3 1 270 3 268 2.66e-84 271
Msa0645500 MtrunA17_Chr6g0482941 46.809 141 70 3 412 551 377 513 1.33e-30 125
Msa0645500 MtrunA17_Chr6g0482951 40.857 350 159 6 1 306 3 348 1.50e-83 269
Msa0645500 MtrunA17_Chr6g0482951 46.479 142 71 3 412 552 377 514 1.39e-30 125
Msa0645500 MtrunA17_Chr1g0195641 48.097 289 97 5 43 286 29 309 2.66e-83 265
Msa0645500 MtrunA17_Chr4g0006131 56.332 229 74 3 41 269 42 244 1.96e-81 263
Msa0645500 MtrunA17_Chr4g0006131 63.433 134 47 2 416 548 367 499 6.68e-49 177
Msa0645500 MtrunA17_Chr3g0087191 67.797 177 45 2 8 184 1 165 2.68e-81 251
Msa0645500 MtrunA17_Chr4g0074561 56.000 225 97 2 46 269 40 263 3.25e-81 263
Msa0645500 MtrunA17_Chr4g0074561 45.926 135 72 1 416 550 379 512 2.80e-31 127
Msa0645500 MtrunA17_Chr3g0090131 54.545 231 93 3 40 270 20 238 9.27e-81 261
Msa0645500 MtrunA17_Chr3g0090131 50.000 138 67 2 418 554 353 489 1.05e-34 137
Msa0645500 MtrunA17_Chr7g0234111 35.798 514 271 11 42 551 76 534 1.37e-79 259
Msa0645500 MtrunA17_Chr3g0090111 54.113 231 94 3 40 270 18 236 2.40e-79 258
Msa0645500 MtrunA17_Chr3g0090111 49.286 140 69 2 416 554 348 486 3.63e-35 138
Msa0645500 MtrunA17_Chr7g0234131 35.867 513 269 15 42 549 76 533 8.10e-79 258
Msa0645500 MtrunA17_Chr4g0074551 55.357 224 97 3 46 269 55 275 2.52e-78 257
Msa0645500 MtrunA17_Chr4g0074551 47.183 142 74 1 416 557 391 531 3.29e-32 130
Msa0645500 MtrunA17_Chr2g0317841 51.965 229 107 3 40 268 31 256 1.48e-77 254
Msa0645500 MtrunA17_Chr2g0317841 39.310 145 87 1 416 560 372 515 5.09e-27 115
Msa0645500 MtrunA17_Chr2g0288071 56.364 220 94 2 50 269 76 293 4.50e-77 253
Msa0645500 MtrunA17_Chr2g0288071 48.227 141 72 1 416 556 409 548 3.59e-35 139
Msa0645500 MtrunA17_Chr2g0288021 52.174 230 107 3 40 269 34 260 5.88e-75 247
Msa0645500 MtrunA17_Chr2g0288021 41.727 139 79 2 417 555 377 513 1.88e-27 116
Msa0645500 MtrunA17_Chr2g0301231 68.939 132 40 1 417 548 260 390 1.23e-59 202
Msa0645500 MtrunA17_Chr2g0301231 42.742 248 70 5 109 309 1 223 2.85e-49 175
Msa0645500 MtrunA17_Chr7g0234091 37.580 314 135 7 42 309 76 374 4.77e-52 186
Msa0645500 MtrunA17_Chr7g0234091 42.029 138 75 1 417 554 405 537 2.58e-25 109
Msa0645500 MtrunA17_Chr3g0087201 60.902 133 48 1 416 548 214 342 6.48e-48 170
Msa0645500 MtrunA17_Chr3g0087201 41.420 169 55 3 185 309 17 185 1.54e-32 127
Msa0645500 MtrunA17_Chr7g0227561 38.462 234 97 3 42 268 47 240 1.06e-47 168
Msa0645500 MtrunA17_Chr7g0230651 34.686 271 126 5 88 313 18 282 3.05e-46 167
Msa0645500 MtrunA17_Chr7g0236731 36.000 225 93 5 130 309 28 246 4.33e-29 116
Msa0645500 MtrunA17_Chr5g0418861 52.747 91 42 1 460 549 1 91 3.36e-24 96.7
Msa0645500 MtrunA17_Chr3g0123191 92.000 50 4 0 344 393 140 189 1.58e-20 94.7
Msa0645500 MtrunA17_Chr7g0227591 52.727 55 26 0 497 551 14 68 7.62e-14 66.6
Msa0645500 MtrunA17_Chr8g0352881 55.556 54 23 1 50 103 7 59 2.03e-13 68.2
Msa0645500 MtrunA17_Chr2g0288031 47.458 59 30 1 192 250 3 60 4.62e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0645500 AT2G44480.1 45.029 513 248 10 40 552 34 512 7.40e-150 441
Msa0645500 AT2G44480.3 45.029 513 248 10 40 552 65 543 1.10e-149 441
Msa0645500 AT5G24550.1 46.198 526 237 13 41 558 32 519 2.68e-148 437
Msa0645500 AT5G24540.1 46.565 524 238 12 41 558 32 519 6.36e-144 426
Msa0645500 AT3G60120.1 43.182 528 230 14 40 548 13 489 3.41e-135 404
Msa0645500 AT1G47600.1 43.580 514 241 14 40 550 44 511 3.39e-129 387
Msa0645500 AT1G47600.2 43.580 514 240 14 40 550 44 510 5.64e-129 387
Msa0645500 AT1G51470.1 43.580 514 241 14 40 550 44 511 1.55e-128 386
Msa0645500 AT3G09260.1 41.406 512 266 10 40 550 34 512 8.66e-124 374
Msa0645500 AT2G32860.2 37.594 532 262 8 40 551 93 574 1.38e-120 369
Msa0645500 AT2G32860.1 37.667 523 273 8 40 551 93 573 1.45e-118 363
Msa0645500 AT5G24540.2 45.316 459 210 12 41 494 32 454 6.79e-116 352
Msa0645500 AT5G26000.1 40.876 548 273 17 13 548 3 511 8.78e-116 354
Msa0645500 AT2G44480.2 41.667 444 225 10 109 552 1 410 7.55e-115 347
Msa0645500 AT5G44640.1 60.606 264 98 2 5 268 1 258 5.31e-113 346
Msa0645500 AT5G44640.1 50.725 138 64 1 416 553 373 506 1.59e-41 157
Msa0645500 AT5G42260.1 60.606 264 98 2 5 268 1 258 8.08e-113 345
Msa0645500 AT5G42260.1 52.713 129 57 1 416 544 373 497 1.28e-38 149
Msa0645500 AT1G61820.1 40.075 534 251 14 33 548 22 504 1.68e-112 345
Msa0645500 AT2G25630.1 59.363 251 102 0 18 268 7 257 4.90e-111 340
Msa0645500 AT2G25630.1 50.847 118 54 1 436 553 375 488 5.11e-31 126
Msa0645500 AT2G44450.1 63.755 229 83 0 40 268 30 258 1.15e-107 332
Msa0645500 AT2G44450.1 54.412 136 58 1 416 551 372 503 1.01e-42 160
Msa0645500 AT2G44480.4 54.861 288 88 2 40 286 65 351 1.86e-107 328
Msa0645500 AT3G60130.1 61.135 229 89 0 41 269 30 258 1.53e-102 319
Msa0645500 AT3G60130.1 50.345 145 68 1 404 548 360 500 1.24e-41 157
Msa0645500 AT1G02850.5 37.643 526 265 12 42 548 27 508 5.36e-102 318
Msa0645500 AT4G27830.1 36.697 545 273 15 13 548 3 484 8.85e-101 314
Msa0645500 AT1G61810.1 37.640 534 261 10 46 559 38 519 1.10e-100 314
Msa0645500 AT1G02850.4 37.571 527 265 13 42 548 27 509 3.78e-100 313
Msa0645500 AT3G60140.2 56.098 246 100 3 20 265 12 249 7.16e-100 310
Msa0645500 AT1G60090.2 37.115 520 274 15 41 559 24 491 9.83e-100 311
Msa0645500 AT3G60140.1 56.098 246 100 3 20 265 12 249 7.29e-98 309
Msa0645500 AT3G60140.1 50.000 132 65 1 418 548 371 502 1.54e-33 135
Msa0645500 AT4G22100.1 37.795 508 267 13 42 548 23 482 9.21e-98 306
Msa0645500 AT2G44470.2 55.319 235 104 1 31 265 19 252 1.11e-97 303
Msa0645500 AT2G44470.1 55.319 235 104 1 31 265 19 252 5.26e-97 303
Msa0645500 AT2G44470.1 48.485 66 34 0 430 495 386 451 6.30e-13 71.6
Msa0645500 AT1G60090.1 36.312 526 277 15 41 559 24 498 7.19e-97 304
Msa0645500 AT1G61810.3 37.849 502 242 8 46 528 38 488 8.99e-96 302
Msa0645500 AT2G44470.3 55.085 236 105 1 31 266 19 253 4.25e-95 302
Msa0645500 AT2G44470.3 50.413 121 59 1 430 549 386 506 5.90e-33 133
Msa0645500 AT2G44490.1 57.202 243 101 2 33 275 7 246 1.58e-94 300
Msa0645500 AT2G44490.1 49.630 135 65 2 417 548 358 492 1.45e-32 132
Msa0645500 AT5G25980.3 45.326 353 144 6 3 309 10 359 2.41e-93 294
Msa0645500 AT5G25980.1 45.326 353 144 6 3 309 10 359 2.41e-93 294
Msa0645500 AT2G44460.1 46.769 325 128 5 29 309 17 340 1.54e-92 295
Msa0645500 AT2G44460.1 52.344 128 60 1 430 556 385 512 1.95e-35 140
Msa0645500 AT5G25980.2 45.326 353 144 6 3 309 10 359 2.01e-92 294
Msa0645500 AT5G25980.2 42.568 148 79 5 417 560 391 536 2.82e-24 107
Msa0645500 AT3G62750.1 35.606 528 265 14 30 548 12 473 1.90e-91 290
Msa0645500 AT3G62750.2 35.606 528 265 14 30 548 38 499 3.53e-91 290
Msa0645500 AT5G54570.3 46.815 314 121 4 40 309 29 340 3.61e-91 288
Msa0645500 AT5G54570.3 41.772 79 46 0 416 494 372 450 3.50e-12 69.3
Msa0645500 AT1G26560.1 49.296 284 100 3 41 283 32 312 1.03e-90 288
Msa0645500 AT1G26560.1 49.618 131 65 1 421 550 378 508 1.06e-33 134
Msa0645500 AT5G26000.2 53.759 266 112 5 13 270 3 265 1.22e-90 286
Msa0645500 AT1G02850.1 54.297 256 98 3 42 283 27 277 2.40e-90 286
Msa0645500 AT1G02850.1 39.655 116 63 2 434 548 349 458 8.90e-18 86.7
Msa0645500 AT5G54570.1 46.815 314 121 4 40 309 29 340 2.92e-90 288
Msa0645500 AT5G54570.1 46.269 134 71 1 416 548 372 505 4.01e-31 127
Msa0645500 AT1G45191.4 36.133 512 270 13 42 551 30 486 1.15e-89 285
Msa0645500 AT3G03640.1 43.671 316 132 3 40 309 33 348 7.55e-89 284
Msa0645500 AT3G03640.1 39.850 133 79 1 417 548 380 512 9.40e-20 93.2
Msa0645500 AT1G75940.1 56.140 228 96 2 41 265 37 263 2.01e-88 283
Msa0645500 AT1G75940.1 50.000 126 57 3 432 553 399 522 1.50e-26 114
Msa0645500 AT1G45191.2 35.659 516 273 14 42 551 30 492 9.18e-88 281
Msa0645500 AT1G02850.3 57.709 227 91 2 42 268 27 248 1.62e-87 278
Msa0645500 AT1G52400.2 51.550 258 120 3 12 266 11 266 2.23e-87 278
Msa0645500 AT1G52400.3 51.550 258 120 3 12 266 11 266 1.26e-86 278
Msa0645500 AT1G52400.3 42.336 137 77 2 417 551 382 518 4.00e-23 103
Msa0645500 AT1G52400.1 51.550 258 120 3 12 266 11 266 1.26e-86 278
Msa0645500 AT1G52400.1 42.336 137 77 2 417 551 382 518 4.00e-23 103
Msa0645500 AT1G02850.2 57.709 227 91 2 42 268 27 248 1.78e-86 277
Msa0645500 AT1G02850.2 39.655 116 63 2 434 548 376 485 1.04e-17 86.7
Msa0645500 AT3G18080.1 55.652 230 98 3 36 265 34 259 2.91e-85 274
Msa0645500 AT3G18080.1 50.345 145 67 3 410 553 372 512 8.46e-34 135
Msa0645500 AT1G66280.1 51.562 256 118 4 16 267 9 262 1.94e-84 272
Msa0645500 AT1G66280.1 45.865 133 71 1 417 548 378 510 5.90e-25 108
Msa0645500 AT3G62740.1 34.808 520 269 16 38 548 20 478 3.99e-84 271
Msa0645500 AT5G28510.1 52.542 236 106 2 35 265 33 267 6.03e-84 271
Msa0645500 AT5G28510.1 37.853 177 99 2 375 550 355 521 2.59e-25 110
Msa0645500 AT3G21370.1 52.402 229 105 2 40 265 32 259 1.12e-83 270
Msa0645500 AT3G21370.1 46.970 132 64 3 421 548 382 511 2.23e-24 107
Msa0645500 AT1G66270.1 53.913 230 102 3 40 267 35 262 6.33e-83 268
Msa0645500 AT1G66270.1 44.444 135 74 1 417 550 378 512 3.07e-24 107
Msa0645500 AT3G18070.4 53.138 239 106 4 32 270 21 253 7.03e-82 261
Msa0645500 AT3G18070.3 52.720 239 101 4 32 270 21 247 6.70e-81 262
Msa0645500 AT3G18070.3 48.966 145 69 3 410 553 355 495 8.59e-37 143
Msa0645500 AT1G51490.1 54.709 223 91 4 48 269 27 240 3.07e-80 258
Msa0645500 AT3G18070.1 53.138 239 106 4 32 270 21 253 3.80e-80 260
Msa0645500 AT3G18070.1 48.966 145 69 3 410 553 361 501 1.03e-36 143
Msa0645500 AT1G66270.2 53.478 230 101 4 40 267 35 260 5.69e-80 260
Msa0645500 AT1G66270.2 44.444 135 74 1 417 550 376 510 3.03e-24 107
Msa0645500 AT1G60270.1 51.739 230 104 3 41 270 24 246 6.28e-78 251
Msa0645500 AT1G61810.2 52.402 229 107 2 41 269 33 259 2.68e-76 244
Msa0645500 AT5G36890.2 47.163 282 96 4 42 282 17 286 4.59e-75 246
Msa0645500 AT5G36890.2 51.773 141 66 1 416 554 347 487 2.34e-38 147
Msa0645500 AT5G36890.1 47.163 282 96 4 42 282 17 286 4.80e-75 246
Msa0645500 AT5G36890.1 52.143 140 65 1 416 553 347 486 3.69e-38 147
Msa0645500 AT1G45191.5 51.092 229 104 3 42 270 30 250 9.76e-75 243
Msa0645500 AT1G45191.3 51.092 229 104 3 42 270 30 250 1.43e-74 243
Msa0645500 AT4G27820.1 52.489 221 98 2 40 260 22 235 2.00e-74 245
Msa0645500 AT4G27820.1 37.931 116 65 2 434 548 373 482 1.93e-16 82.8
Msa0645500 AT1G61810.4 52.402 229 107 2 41 269 33 259 2.48e-74 243
Msa0645500 AT1G61810.5 35.032 471 234 10 109 559 1 419 7.42e-74 241
Msa0645500 AT1G45191.6 51.092 229 104 3 42 270 30 250 2.34e-73 243
Msa0645500 AT1G45191.6 34.821 112 68 2 441 551 390 497 3.28e-11 66.2
Msa0645500 AT3G62750.4 35.435 460 225 12 30 482 38 432 3.22e-73 241
Msa0645500 AT3G62750.7 46.038 265 118 4 30 294 12 251 1.05e-72 237
Msa0645500 AT3G62750.8 46.038 265 118 4 30 294 12 251 1.05e-72 237
Msa0645500 AT3G62750.3 46.038 265 118 4 30 294 38 277 3.00e-72 238
Msa0645500 AT4G21760.1 52.000 225 105 3 46 270 59 280 3.23e-72 240
Msa0645500 AT4G21760.1 45.217 115 57 2 434 548 403 511 2.34e-22 101
Msa0645500 AT4G21760.2 52.000 225 105 3 46 270 59 280 4.58e-72 240
Msa0645500 AT4G21760.2 42.466 146 78 2 403 548 382 521 1.80e-27 117
Msa0645500 AT1G45191.1 49.791 239 104 4 42 270 30 262 5.54e-72 239
Msa0645500 AT1G45191.1 34.821 112 68 2 441 551 402 509 3.12e-11 66.2
Msa0645500 AT4G27830.2 34.452 447 235 12 109 548 1 396 1.75e-70 233
Msa0645500 AT3G62740.2 36.047 430 212 14 38 459 20 394 6.97e-70 231
Msa0645500 AT3G60130.3 59.281 167 68 0 103 269 40 206 2.09e-69 231
Msa0645500 AT3G60130.3 47.586 145 61 2 404 548 308 437 1.55e-35 139
Msa0645500 AT3G60130.2 59.281 167 68 0 103 269 40 206 3.60e-69 230
Msa0645500 AT3G60130.2 54.135 133 57 1 416 548 320 448 3.78e-42 157
Msa0645500 AT1G61820.3 36.408 412 194 13 155 548 4 365 1.63e-65 218
Msa0645500 AT5G48375.1 39.308 318 113 8 37 309 34 316 9.71e-61 207
Msa0645500 AT3G62750.6 32.294 449 234 13 109 548 1 388 2.93e-59 202
Msa0645500 AT3G62750.5 32.294 449 234 13 109 548 1 388 2.93e-59 202
Msa0645500 AT5G54570.2 43.673 245 92 4 109 309 1 243 3.34e-58 201
Msa0645500 AT5G54570.2 46.269 134 71 1 416 548 275 408 1.83e-31 127
Msa0645500 AT2G44480.5 34.328 335 186 10 218 552 6 306 6.36e-54 185
Msa0645500 AT1G60270.2 51.235 162 76 2 109 270 1 159 4.03e-49 172
Msa0645500 AT4G27820.2 51.316 152 72 1 109 260 1 150 1.41e-45 166
Msa0645500 AT4G27820.2 38.793 116 64 2 434 548 288 397 1.17e-16 82.8
Msa0645500 AT4G27820.3 51.316 152 72 1 109 260 1 150 1.41e-45 166
Msa0645500 AT4G27820.3 38.793 116 64 2 434 548 288 397 1.17e-16 82.8
Msa0645500 AT2G44450.2 54.015 137 59 1 416 552 221 353 4.26e-44 160
Msa0645500 AT2G44450.2 59.813 107 43 0 162 268 1 107 5.18e-42 154
Msa0645500 AT3G18070.7 48.966 145 69 3 410 553 172 312 5.24e-38 142
Msa0645500 AT3G18070.7 50.769 65 31 1 206 270 1 64 8.36e-13 70.1
Msa0645500 AT3G18070.2 48.966 145 69 3 410 553 284 424 2.71e-37 143
Msa0645500 AT3G18070.2 53.165 79 36 1 192 270 99 176 1.62e-19 91.7
Msa0645500 AT3G18070.2 55.556 72 31 1 32 103 21 91 1.46e-18 88.6
Msa0645500 AT2G44460.2 52.344 128 60 1 430 556 239 366 3.25e-36 140
Msa0645500 AT2G44460.2 41.237 194 70 4 160 309 1 194 1.18e-33 133
Msa0645500 AT3G18070.5 53.165 79 36 1 192 270 99 176 6.70e-20 91.7
Msa0645500 AT3G18070.5 55.556 72 31 1 32 103 21 91 6.94e-19 88.6
Msa0645500 AT3G06510.2 27.108 166 103 5 104 260 159 315 2.22e-13 73.6
Msa0645500 AT3G06510.1 27.108 166 103 5 104 260 159 315 2.43e-13 73.2
Msa0645500 AT3G18070.6 50.769 65 31 1 206 270 1 64 2.61e-13 70.1
Msa0645500 AT3G26090.1 36.441 118 64 5 344 453 139 253 9.40e-11 64.7

Find 100 sgRNAs with CRISPR-Local

Find 331 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTATACTACTTTGATATT+TGG 0.199932 4_3:-50829633 Msa0645500:CDS
TGCTAAGAGGCTTCTTTATA+TGG 0.206814 4_3:+50829399 None:intergenic
TTTCCAGAAGGCTTCATATT+TGG 0.217301 4_3:-50832116 Msa0645500:CDS
CTTGTTTAATTATAGGTTTA+TGG 0.235433 4_3:-50830858 Msa0645500:intron
CACCAGGTCGATGTTCTTCT+TGG 0.235520 4_3:-50831298 Msa0645500:CDS
AATTGCACCGGTGGTGATTC+TGG 0.263758 4_3:-50831266 Msa0645500:CDS
GAATCACCACCGGTGCAATT+TGG 0.269114 4_3:+50831269 None:intergenic
CATTGTGGAAGCATTGGTTT+TGG 0.291128 4_3:-50828881 Msa0645500:CDS
GTGGAAGAGGACCAAGTATA+TGG 0.292452 4_3:-50832049 Msa0645500:CDS
CAATAACCTCATTGATGAAT+TGG 0.307366 4_3:-50831733 Msa0645500:CDS
TGATAGTGTGCAGTTAAATA+AGG 0.310074 4_3:+50831236 None:intergenic
GAACTTTGCTTTAAAACATT+TGG 0.321295 4_3:-50831398 Msa0645500:CDS
TGCAAATAGGTTCATTGAAT+AGG 0.340286 4_3:-50832145 Msa0645500:CDS
CTCTGATCCAACATTGCATT+GGG 0.342126 4_3:-50829557 Msa0645500:CDS
AAGACAACAATAGAGAAAAT+AGG 0.342774 4_3:+50832228 None:intergenic
AGGGGTTATACTGTGAGATT+TGG 0.352676 4_3:-50827252 Msa0645500:CDS
AACACTGCACCATTGCAAAT+AGG 0.356617 4_3:-50832158 Msa0645500:CDS
GTGCCAAATATGAAGCCTTC+TGG 0.376589 4_3:+50832113 None:intergenic
AAACTTACATTTAGACCAAT+TGG 0.381135 4_3:+50827823 None:intergenic
CCATGGAGTTACAGTCAAAA+TGG 0.382192 4_3:-50831341 Msa0645500:CDS
TGTATGTTGCCACTTTGGTT+GGG 0.394436 4_3:-50829322 Msa0645500:CDS
TTAATTTATATTACTGAAAA+CGG 0.394477 4_3:-50827623 Msa0645500:intron
CTGTGCATCATATAGAGTTC+AGG 0.397383 4_3:-50829289 Msa0645500:intron
ACTGAACGCAATATGCAATA+AGG 0.406801 4_3:+50829599 None:intergenic
CAATCTCTAGAAGATGAATA+TGG 0.407604 4_3:-50831560 Msa0645500:CDS
TATCTCATGCTTAATGTCAT+AGG 0.409360 4_3:+50832254 None:intergenic
GCTGTATACAATTGTGCATA+TGG 0.442919 4_3:-50829670 Msa0645500:CDS
ATTGCATATTGCGTTCAGTT+TGG 0.444699 4_3:-50829595 Msa0645500:CDS
TTGTATGTTGCCACTTTGGT+TGG 0.446105 4_3:-50829323 Msa0645500:CDS
TTATAGGTTTATGGATCCCT+TGG 0.446664 4_3:-50830849 Msa0645500:intron
TGATTCGTATCATCGATATA+AGG 0.454141 4_3:-50831964 Msa0645500:CDS
TATTCATCTTCTAGAGATTG+AGG 0.466417 4_3:+50831563 None:intergenic
AAGCTTCATTGTGGAAGCAT+TGG 0.468371 4_3:-50828887 Msa0645500:CDS
AAAAGATATCAAAAGCTCTC+AGG 0.470702 4_3:-50827198 Msa0645500:CDS
GCACGAGATGGAAAACCAAT+TGG 0.474977 4_3:-50827838 Msa0645500:CDS
GCAGCAAGTGAAGGTGGAAG+AGG 0.487766 4_3:-50832062 Msa0645500:CDS
ATACTTTGCATGGTCTCTGT+TGG 0.489827 4_3:-50827292 Msa0645500:CDS
GAGTATTCTAGACCAAGAAA+TGG 0.494812 4_3:+50831893 None:intergenic
GCTCTGATCCAACATTGCAT+TGG 0.496986 4_3:-50829558 Msa0645500:CDS
CAGGGCTGGTGTAAATGTAA+AGG 0.496998 4_3:-50827316 Msa0645500:CDS
AATTTCAGGTTGCTTCAGAA+TGG 0.500231 4_3:-50827712 Msa0645500:intron
AGTCAAAATGGATATGCAAA+TGG 0.504705 4_3:-50831329 Msa0645500:CDS
GTGTGCAGTTAAATAAGGTT+CGG 0.508262 4_3:+50831241 None:intergenic
CATCGATATAAGGAAGATGT+TGG 0.511755 4_3:-50831954 Msa0645500:CDS
GTACGACGATCCATCATTAT+CGG 0.514862 4_3:-50827505 Msa0645500:CDS
AGGGCTGGTGTAAATGTAAA+GGG 0.516329 4_3:-50827315 Msa0645500:CDS
TGGATAATCTCCATTGGCCA+AGG 0.518626 4_3:+50830832 None:intergenic
ATGCAATCCCAATGCAATGT+TGG 0.522691 4_3:+50829550 None:intergenic
GTATGTTGCCACTTTGGTTG+GGG 0.523906 4_3:-50829321 Msa0645500:CDS
GCAAATGGCGCAATGGCACC+AGG 0.525181 4_3:-50831314 Msa0645500:CDS
ACATTGCATTGGGATTGCAT+TGG 0.527456 4_3:-50829547 Msa0645500:CDS
TTCAATGAACCTATTTGCAA+TGG 0.527927 4_3:+50832149 None:intergenic
TTCATCATTACTTTAACAGA+AGG 0.528077 4_3:-50832194 Msa0645500:CDS
GATTCCTCAACCGATAATGA+TGG 0.529816 4_3:+50827495 None:intergenic
TGCGTTGTATGTTGCCACTT+TGG 0.530591 4_3:-50829327 Msa0645500:CDS
TGGAAGAGGACCAAGTATAT+GGG 0.531156 4_3:-50832048 Msa0645500:CDS
GCATATGGTTCAGATAGAGT+TGG 0.538421 4_3:-50829655 Msa0645500:CDS
ATTGATGAATTGGTGGCAAA+TGG 0.539277 4_3:-50831723 Msa0645500:intron
TAACCTCATTGATGAATTGG+TGG 0.539436 4_3:-50831730 Msa0645500:CDS
TGATCTTACCAATGCTCGCA+TGG 0.539778 4_3:+50830805 None:intergenic
CGATCCATCATTATCGGTTG+AGG 0.542716 4_3:-50827499 Msa0645500:CDS
ATGCGGCAGCGATTGCTAAG+AGG 0.545428 4_3:+50829386 None:intergenic
TCTTCTGCATATCAATATGA+AGG 0.549189 4_3:-50832086 Msa0645500:CDS
TTTATGGATCCCTTGGCCAA+TGG 0.549813 4_3:-50830842 Msa0645500:CDS
GGATAACTTTGAACGAGCCA+TGG 0.555448 4_3:-50831358 Msa0645500:CDS
TTGGAGATAGAGTAAAACAT+TGG 0.559088 4_3:-50831379 Msa0645500:CDS
GTGATTGCAGTCGCACGAGA+TGG 0.559174 4_3:-50827850 Msa0645500:intron
TATCCTCAAAAGATCAGTGA+TGG 0.559832 4_3:-50832008 Msa0645500:CDS
ATCAAAAGCTCTCAGGATTG+TGG 0.567379 4_3:-50827191 Msa0645500:CDS
GTGAAAGTATCCCATATACT+TGG 0.569026 4_3:+50832038 None:intergenic
TATTGCGTTCAGTTTGGTGA+TGG 0.569423 4_3:-50829589 Msa0645500:CDS
TTGCCACCAATTCATCAATG+AGG 0.575333 4_3:+50831727 None:intergenic
AAGATCAGTGATGGAAACAA+TGG 0.577375 4_3:-50831999 Msa0645500:CDS
GGATAATCTCCATTGGCCAA+GGG 0.583402 4_3:+50830833 None:intergenic
TGTTGATGCATTCAAACCAT+AGG 0.584854 4_3:+50828858 None:intergenic
TGGATATGCAAATGGCGCAA+TGG 0.586330 4_3:-50831321 Msa0645500:CDS
ATGGTTTGAATGCATCAACA+TGG 0.588134 4_3:-50828855 Msa0645500:CDS
TGGCAACATACAACGCATGA+AGG 0.588734 4_3:+50829333 None:intergenic
AATCATGAAGGATATGAACT+TGG 0.589040 4_3:-50831931 Msa0645500:CDS
GGAAGATGTTGGAATCATGA+AGG 0.590169 4_3:-50831943 Msa0645500:CDS
TGGTTGAATCCAAATTGCAC+CGG 0.592901 4_3:-50831278 Msa0645500:CDS
AGTGGAGGAATTAATCAAGA+AGG 0.596031 4_3:-50831768 Msa0645500:CDS
GAAGGTGCAGCAAGTGAAGG+TGG 0.597164 4_3:-50832068 Msa0645500:CDS
CTTTAAGATAAAAGAGATGA+CGG 0.600540 4_3:+50827439 None:intergenic
TATGAAGGTGCAGCAAGTGA+AGG 0.604375 4_3:-50832071 Msa0645500:CDS
TTCGGTTCCAGAATCACCAC+CGG 0.620495 4_3:+50831259 None:intergenic
TGGTTGTATGTTTATCCAAG+AGG 0.620982 4_3:-50827692 Msa0645500:CDS
TATGCAGAAGGAAAACTAAG+TGG 0.622424 4_3:-50831786 Msa0645500:intron
AGCAGTTACCCCAACCAAAG+TGG 0.622897 4_3:+50829313 None:intergenic
ATGTAAAGGGATACTTTGCA+TGG 0.626161 4_3:-50827302 Msa0645500:CDS
GCAGAAGGAAAACTAAGTGG+AGG 0.648203 4_3:-50831783 Msa0645500:intron
TGTATCACTCACATGATGAG+AGG 0.655919 4_3:+50831524 None:intergenic
GCTGCCGCATGTCAGTTCAG+TGG 0.666182 4_3:-50829373 Msa0645500:CDS
TTGAATCCAAATTGCACCGG+TGG 0.672179 4_3:-50831275 Msa0645500:CDS
AACCAAGAAGAACATCGACC+TGG 0.677559 4_3:+50831296 None:intergenic
TCTCTAGAAGATGAATATGG+CGG 0.701636 4_3:-50831557 Msa0645500:CDS
TGGTTTGAATGCATCAACAT+GGG 0.703729 4_3:-50828854 Msa0645500:CDS
TGGAAACAATGGAGACGTTG+CGG 0.708998 4_3:-50831988 Msa0645500:CDS
TAGTCCACTGAACTGACATG+CGG 0.736109 4_3:+50829369 None:intergenic
AAAAGACTTTCAAAACTACG+CGG 0.803991 4_3:-50831420 Msa0645500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTATAAAAAAAAAAAAT+GGG + chr4_3:50827662-50827681 None:intergenic 0.0%
!! TAAATTATAAAAAAAAAAAA+TGG + chr4_3:50827663-50827682 None:intergenic 0.0%
!! AGTATTATAAATTTAAATGA+TGG - chr4_3:50831578-50831597 Msa0645500:CDS 10.0%
!!! CTTACTTTTTTTTTTTTTTT+TGG - chr4_3:50831688-50831707 Msa0645500:intron 10.0%
!!! TTTTCAGTAATATAAATTAA+AGG + chr4_3:50831844-50831863 None:intergenic 10.0%
!! TTAATTTATATTACTGAAAA+CGG - chr4_3:50831844-50831863 Msa0645500:intron 10.0%
!! TATAAAAAAAAAAAATGGGT+TGG + chr4_3:50827658-50827677 None:intergenic 15.0%
!!! TTTTTTATAATTTATGCAGA+AGG - chr4_3:50827669-50827688 Msa0645500:CDS 15.0%
!!! TTATATGTGTATTTAATTTC+AGG - chr4_3:50831741-50831760 Msa0645500:CDS 15.0%
!!! TATTTTATAATCGCTTTTGT+AGG + chr4_3:50827189-50827208 None:intergenic 20.0%
!! TTTAATTGAGAATAGTCAAT+TGG + chr4_3:50827620-50827639 None:intergenic 20.0%
!!! GCAATTTTTTTTACATAAGA+CGG + chr4_3:50827844-50827863 None:intergenic 20.0%
!! TCTTATGTAAAAAAAATTGC+AGG - chr4_3:50827844-50827863 Msa0645500:intron 20.0%
!!! ATTTGTAACTCTTTTTCATT+GGG - chr4_3:50827876-50827895 Msa0645500:intron 20.0%
!!! TCCATTTCTTGTTTAATTAT+AGG - chr4_3:50828602-50828621 Msa0645500:intron 20.0%
!! ACCTATAATTAAACAAGAAA+TGG + chr4_3:50828606-50828625 None:intergenic 20.0%
!! CTTGTTTAATTATAGGTTTA+TGG - chr4_3:50828609-50828628 Msa0645500:intron 20.0%
!! TAACCAAATTTAAAGATTGA+AGG + chr4_3:50829067-50829086 None:intergenic 20.0%
!! ATATCGAATTTCTATGAAAA+CGG + chr4_3:50829143-50829162 None:intergenic 20.0%
!! TACAGTACAATAATGAAATA+TGG + chr4_3:50829560-50829579 None:intergenic 20.0%
!! GATTATACTACTTTGATATT+TGG - chr4_3:50829834-50829853 Msa0645500:intron 20.0%
!!! TAATTCAAATTTTCATGTGT+AGG - chr4_3:50831930-50831949 Msa0645500:CDS 20.0%
!!! ATTTTCATAGATTACAAAGA+TGG - chr4_3:50832242-50832261 Msa0645500:CDS 20.0%
! AAGACAACAATAGAGAAAAT+AGG + chr4_3:50827242-50827261 None:intergenic 25.0%
! TTCATCATTACTTTAACAGA+AGG - chr4_3:50827273-50827292 Msa0645500:CDS 25.0%
!! CATATAGATTTTCCATTTCT+TGG - chr4_3:50827562-50827581 Msa0645500:intron 25.0%
!! GGTATAAAATTGACTTACTT+GGG + chr4_3:50827599-50827618 None:intergenic 25.0%
!! TGGTATAAAATTGACTTACT+TGG + chr4_3:50827600-50827619 None:intergenic 25.0%
! CAATGAAAAAGAGTTACAAA+TGG + chr4_3:50827877-50827896 None:intergenic 25.0%
!!! CATTTGTAACTCTTTTTCAT+TGG - chr4_3:50827875-50827894 Msa0645500:intron 25.0%
!!! GAACTTTGCTTTAAAACATT+TGG - chr4_3:50828069-50828088 Msa0645500:intron 25.0%
!!! ATTTTGAGAAACTTGATACT+TGG + chr4_3:50828295-50828314 None:intergenic 25.0%
! AAGTATCAAGTTTCTCAAAA+TGG - chr4_3:50828294-50828313 Msa0645500:intron 25.0%
! GTATAACATTGATCATTAAC+TGG - chr4_3:50828325-50828344 Msa0645500:intron 25.0%
! TAGATATGCTTGTGTTAATT+TGG + chr4_3:50828537-50828556 None:intergenic 25.0%
! AAGAGAAAAAACGAAAAATC+AGG + chr4_3:50829022-50829041 None:intergenic 25.0%
!! TTTTCTCTTCTTCTGATAAT+CGG - chr4_3:50829033-50829052 Msa0645500:intron 25.0%
! CATCCTTCAATCTTTAAATT+TGG - chr4_3:50829061-50829080 Msa0645500:intron 25.0%
! TTGAATCCTATAATTGAAGA+AGG + chr4_3:50829355-50829374 None:intergenic 25.0%
! AAATCAAAAACACTAGAGTT+TGG + chr4_3:50829466-50829485 None:intergenic 25.0%
! TTGATTTCCAATCTTTGATT+CGG - chr4_3:50829479-50829498 Msa0645500:intron 25.0%
!!! TTGAGAAATTTGTTTTTCAG+AGG - chr4_3:50829580-50829599 Msa0645500:CDS 25.0%
!!! CTTTGATATTTGGTGTTTTT+TGG - chr4_3:50829844-50829863 Msa0645500:intron 25.0%
!! CTGCATTTTTGTTCTATTTT+TGG - chr4_3:50830539-50830558 Msa0645500:intron 25.0%
!! TATTTTCTTAAGCTTCATTG+TGG - chr4_3:50830571-50830590 Msa0645500:intron 25.0%
!!! TTGGATATCATCATTGATTT+TGG - chr4_3:50830951-50830970 Msa0645500:intron 25.0%
! AATATCAACAAAGCCAATTA+AGG + chr4_3:50831047-50831066 None:intergenic 25.0%
!!! TTAATTGGCTTTGTTGATAT+TGG - chr4_3:50831046-50831065 Msa0645500:intron 25.0%
! ACTTGAAATGAGAAAATACA+AGG + chr4_3:50831206-50831225 None:intergenic 25.0%
!!! TGTATTTTCTCATTTCAAGT+TGG - chr4_3:50831206-50831225 Msa0645500:CDS 25.0%
! TAAAATCAAATGAACCTGTT+AGG + chr4_3:50831410-50831429 None:intergenic 25.0%
!!! ACAGGTTCATTTGATTTTAT+TGG - chr4_3:50831411-50831430 Msa0645500:CDS 25.0%
! AAACTTACATTTAGACCAAT+TGG + chr4_3:50831647-50831666 None:intergenic 25.0%
!!! CTTTAAGATAAAAGAGATGA+CGG + chr4_3:50832031-50832050 None:intergenic 25.0%
!! TCATCTCTTTTATCTTAAAG+AGG - chr4_3:50832031-50832050 Msa0645500:CDS 25.0%
!!! AGTCTATTTCATTTTTTGCA+TGG - chr4_3:50832091-50832110 Msa0645500:CDS 25.0%
! TATTTCTTTCAATGAAATGC+AGG - chr4_3:50832132-50832151 Msa0645500:CDS 25.0%
! ATTTCTTTCAATGAAATGCA+GGG - chr4_3:50832133-50832152 Msa0645500:CDS 25.0%
!! ATAATCGCTTTTGTAGGTTA+TGG + chr4_3:50827183-50827202 None:intergenic 30.0%
TATCTCATGCTTAATGTCAT+AGG + chr4_3:50827216-50827235 None:intergenic 30.0%
TTCAATGAACCTATTTGCAA+TGG + chr4_3:50827321-50827340 None:intergenic 30.0%
TGCAAATAGGTTCATTGAAT+AGG - chr4_3:50827322-50827341 Msa0645500:intron 30.0%
! AATAGGAATGATTTTCCAGA+AGG - chr4_3:50827339-50827358 Msa0645500:intron 30.0%
TCTTCTGCATATCAATATGA+AGG - chr4_3:50827381-50827400 Msa0645500:intron 30.0%
TGATTCGTATCATCGATATA+AGG - chr4_3:50827503-50827522 Msa0645500:CDS 30.0%
AATCATGAAGGATATGAACT+TGG - chr4_3:50827536-50827555 Msa0645500:intron 30.0%
CAATAACCTCATTGATGAAT+TGG - chr4_3:50827734-50827753 Msa0645500:intron 30.0%
! TTTACATAAGACGGCTATTT+TGG + chr4_3:50827835-50827854 None:intergenic 30.0%
! TATTCATCTTCTAGAGATTG+AGG + chr4_3:50827907-50827926 None:intergenic 30.0%
! CAATCTCTAGAAGATGAATA+TGG - chr4_3:50827907-50827926 Msa0645500:intron 30.0%
! TTGAAAGTCTTTTCTGTAGT+TGG + chr4_3:50828040-50828059 None:intergenic 30.0%
AAAAGACTTTCAAAACTACG+CGG - chr4_3:50828047-50828066 Msa0645500:intron 30.0%
TTGGAGATAGAGTAAAACAT+TGG - chr4_3:50828088-50828107 Msa0645500:intron 30.0%
AGTCAAAATGGATATGCAAA+TGG - chr4_3:50828138-50828157 Msa0645500:intron 30.0%
! TGATAGTGTGCAGTTAAATA+AGG + chr4_3:50828234-50828253 None:intergenic 30.0%
GTTTCTCAAAATGGTTTGAT+CGG - chr4_3:50828303-50828322 Msa0645500:intron 30.0%
!! TTATGTTTGTTATCTGAGAG+CGG + chr4_3:50828357-50828376 None:intergenic 30.0%
CAAACATAATCAAAATGCTG+CGG - chr4_3:50828368-50828387 Msa0645500:intron 30.0%
AGATGGAAAAGAAACAAGTT+TGG + chr4_3:50828463-50828482 None:intergenic 30.0%
AATTATGTAAGTGACACAGT+CGG + chr4_3:50828507-50828526 None:intergenic 30.0%
! TATGCTTGTGTTAATTTGGA+TGG + chr4_3:50828533-50828552 None:intergenic 30.0%
GATTGCTCTTTAGTAAACTT+TGG + chr4_3:50828694-50828713 None:intergenic 30.0%
AGAAAAGTTATCCCACTAAT+GGG + chr4_3:50828778-50828797 None:intergenic 30.0%
! ATTTTCTCAAGAAAATGCAG+CGG + chr4_3:50828926-50828945 None:intergenic 30.0%
TTTGGTTACGATTTCTTGAA+CGG - chr4_3:50829079-50829098 Msa0645500:intron 30.0%
TATGAAATTGAAGCAGAACA+AGG + chr4_3:50829108-50829127 None:intergenic 30.0%
AATTACGAACCCTATGAATT+GGG + chr4_3:50829273-50829292 None:intergenic 30.0%
TTCCAATTCGTTTCTTGATT+CGG - chr4_3:50829291-50829310 Msa0645500:CDS 30.0%
ATAATTGAAGAAGGAAGGAT+CGG + chr4_3:50829346-50829365 None:intergenic 30.0%
ATCCTTCCTTCTTCAATTAT+AGG - chr4_3:50829346-50829365 Msa0645500:CDS 30.0%
ATCCTATAATTGAAGAAGGA+AGG + chr4_3:50829351-50829370 None:intergenic 30.0%
AAGATGAAATATCAACGACA+CGG + chr4_3:50829534-50829553 None:intergenic 30.0%
!!! TAGTTCTCTGTTTTGCTATT+TGG - chr4_3:50829745-50829764 Msa0645500:intron 30.0%
! TGCAATTAGTTCATTTTCTC+TGG - chr4_3:50829775-50829794 Msa0645500:intron 30.0%
! TTTTGTACAACATCTCATTG+TGG - chr4_3:50829983-50830002 Msa0645500:intron 30.0%
GTTGGATGTTAATTGATATC+TGG - chr4_3:50830009-50830028 Msa0645500:intron 30.0%
GGCATGAATTTCATTAAGTA+TGG + chr4_3:50830277-50830296 None:intergenic 30.0%
AAATTCATGCCAATATCTCA+TGG - chr4_3:50830286-50830305 Msa0645500:intron 30.0%
AACTTTAAGCCATGAGATAT+TGG + chr4_3:50830298-50830317 None:intergenic 30.0%
!!! TGTTCTATTTTTGGCTATGT+TGG - chr4_3:50830548-50830567 Msa0645500:intron 30.0%
AGAAAAGTTATCCCACTAAT+GGG + chr4_3:50828778-50828797 None:intergenic 30.0%
GAATTTGCATTGCTTAATTG+AGG + chr4_3:50831474-50831493 None:intergenic 30.0%
! CTCTGTTGGATAATTTTGAA+TGG - chr4_3:50832189-50832208 Msa0645500:CDS 30.0%
AAAAGATATCAAAAGCTCTC+AGG - chr4_3:50832269-50832288 Msa0645500:exon 30.0%
TTTCCAGAAGGCTTCATATT+TGG - chr4_3:50827351-50827370 Msa0645500:intron 35.0%
!! GTGAAAGTATCCCATATACT+TGG + chr4_3:50827432-50827451 None:intergenic 35.0%
TATCCTCAAAAGATCAGTGA+TGG - chr4_3:50827459-50827478 Msa0645500:CDS 35.0%
! TTTCCATCACTGATCTTTTG+AGG + chr4_3:50827465-50827484 None:intergenic 35.0%
! AAGATCAGTGATGGAAACAA+TGG - chr4_3:50827468-50827487 Msa0645500:CDS 35.0%
CATCGATATAAGGAAGATGT+TGG - chr4_3:50827513-50827532 Msa0645500:CDS 35.0%
GAGTATTCTAGACCAAGAAA+TGG + chr4_3:50827577-50827596 None:intergenic 35.0%
TATGCAGAAGGAAAACTAAG+TGG - chr4_3:50827681-50827700 Msa0645500:CDS 35.0%
AGTGGAGGAATTAATCAAGA+AGG - chr4_3:50827699-50827718 Msa0645500:CDS 35.0%
TAACCTCATTGATGAATTGG+TGG - chr4_3:50827737-50827756 Msa0645500:intron 35.0%
! ATTGATGAATTGGTGGCAAA+TGG - chr4_3:50827744-50827763 Msa0645500:intron 35.0%
! TCTCTAGAAGATGAATATGG+CGG - chr4_3:50827910-50827929 Msa0645500:intron 35.0%
! AAAGTCTTTTCTGTAGTTGG+AGG + chr4_3:50828037-50828056 None:intergenic 35.0%
GTGTGCAGTTAAATAAGGTT+CGG + chr4_3:50828229-50828248 None:intergenic 35.0%
TTATAGGTTTATGGATCCCT+TGG - chr4_3:50828618-50828637 Msa0645500:intron 35.0%
!! GGTTTTTGGATAATCTCCAT+TGG + chr4_3:50828644-50828663 None:intergenic 35.0%
ACTTGTAATAACCCCATTAG+TGG - chr4_3:50828763-50828782 Msa0645500:intron 35.0%
CTTGTAATAACCCCATTAGT+GGG - chr4_3:50828764-50828783 Msa0645500:intron 35.0%
GAAAAGTTATCCCACTAATG+GGG + chr4_3:50828777-50828796 None:intergenic 35.0%
GAGAAAAGTTATCCCACTAA+TGG + chr4_3:50828779-50828798 None:intergenic 35.0%
TATTTCTCTCTTTCCTTCCA+TGG - chr4_3:50828842-50828861 Msa0645500:CDS 35.0%
TGATACCATGTTAGGAAACA+TGG + chr4_3:50828871-50828890 None:intergenic 35.0%
!! ATTAGCTCTGATACCATGTT+AGG + chr4_3:50828879-50828898 None:intergenic 35.0%
ATTTCGAAACCCTAGGATTT+GGG + chr4_3:50829186-50829205 None:intergenic 35.0%
AATTTCGAAACCCTAGGATT+TGG + chr4_3:50829187-50829206 None:intergenic 35.0%
ACAAGAAATTTCGAAACCCT+AGG + chr4_3:50829193-50829212 None:intergenic 35.0%
AAGCAAGAAACTCAAATCGA+AGG + chr4_3:50829225-50829244 None:intergenic 35.0%
! TGCAATTTTCCCCAATTCAT+AGG - chr4_3:50829260-50829279 Msa0645500:intron 35.0%
! GCAATTTTCCCCAATTCATA+GGG - chr4_3:50829261-50829280 Msa0645500:intron 35.0%
ATTACGAACCCTATGAATTG+GGG + chr4_3:50829272-50829291 None:intergenic 35.0%
GAATTACGAACCCTATGAAT+TGG + chr4_3:50829274-50829293 None:intergenic 35.0%
AACCGAATCAAGAAACGAAT+TGG + chr4_3:50829296-50829315 None:intergenic 35.0%
!!! TTCGTTTCTTGATTCGGTTT+TGG - chr4_3:50829297-50829316 Msa0645500:CDS 35.0%
! TTTGGAACAAACAAGGAGTT+AGG + chr4_3:50829448-50829467 None:intergenic 35.0%
! ACTAGAGTTTGGAACAAACA+AGG + chr4_3:50829455-50829474 None:intergenic 35.0%
!! TTCCAATCTTTGATTCGGTT+CGG - chr4_3:50829484-50829503 Msa0645500:intron 35.0%
AAACATCTTGTGAGCACAAT+AGG + chr4_3:50829633-50829652 None:intergenic 35.0%
ACTGCAAACATAACGATTCT+TGG - chr4_3:50829666-50829685 Msa0645500:CDS 35.0%
!!! TCTGTTTTGCTATTTGGACA+AGG - chr4_3:50829751-50829770 Msa0645500:intron 35.0%
GCTGTATACAATTGTGCATA+TGG - chr4_3:50829797-50829816 Msa0645500:intron 35.0%
ACTGAACGCAATATGCAATA+AGG + chr4_3:50829871-50829890 None:intergenic 35.0%
ATTGCATATTGCGTTCAGTT+TGG - chr4_3:50829872-50829891 Msa0645500:intron 35.0%
! AACATCTCATTGTGGATTGT+TGG - chr4_3:50829991-50830010 Msa0645500:intron 35.0%
TGCTAAGAGGCTTCTTTATA+TGG + chr4_3:50830071-50830090 None:intergenic 35.0%
! TGTCTCCAGTTCTAATATGT+CGG - chr4_3:50830317-50830336 Msa0645500:intron 35.0%
ACAAACCGACATATTAGAAC+TGG + chr4_3:50830325-50830344 None:intergenic 35.0%
CGGTTTGTGATAATTCATTG+TGG - chr4_3:50830337-50830356 Msa0645500:intron 35.0%
CAAAATTCATCAACGATCCA+GGG + chr4_3:50830438-50830457 None:intergenic 35.0%
!! CTGGATCGTTGATGAATTTT+GGG - chr4_3:50830437-50830456 Msa0645500:intron 35.0%
!! AAACCTTTAAAGCATCCTCT+TGG - chr4_3:50830461-50830480 Msa0645500:intron 35.0%
!! AACCTTTAAAGCATCCTCTT+GGG - chr4_3:50830462-50830481 Msa0645500:intron 35.0%
!! GGGTTCATTTTGATGTCTAT+TGG - chr4_3:50830482-50830501 Msa0645500:intron 35.0%
TGTTGATGCATTCAAACCAT+AGG + chr4_3:50830612-50830631 None:intergenic 35.0%
ATGGTTTGAATGCATCAACA+TGG - chr4_3:50830612-50830631 Msa0645500:intron 35.0%
TGGTTTGAATGCATCAACAT+GGG - chr4_3:50830613-50830632 Msa0645500:intron 35.0%
!! TCAACATGGGTTGTTTTCTA+TGG - chr4_3:50830626-50830645 Msa0645500:intron 35.0%
!!! GCCATTAGTTTTTCTTGTCT+CGG - chr4_3:50830689-50830708 Msa0645500:intron 35.0%
!! CACTTTTATCTTTGGAAGCT+TGG - chr4_3:50830730-50830749 Msa0645500:intron 35.0%
TGAACAAACTTCACACCAAA+AGG + chr4_3:50830773-50830792 None:intergenic 35.0%
GACAAGAAAAACCAAATGCA+AGG + chr4_3:50830832-50830851 None:intergenic 35.0%
!!! GCATTTGGTTTTTCTTGTCT+CGG - chr4_3:50830833-50830852 Msa0645500:CDS 35.0%
!!! CACTTTTATCTTTGGAACCT+TGG - chr4_3:50830874-50830893 Msa0645500:intron 35.0%
! GATATCCAAAAAGAAGTGCA+AGG + chr4_3:50830940-50830959 None:intergenic 35.0%
!! TTGTTGATATTGGCTTCTAC+CGG - chr4_3:50831056-50831075 Msa0645500:intron 35.0%
TGGATGCTTATTCCTTCAAT+TGG - chr4_3:50831098-50831117 Msa0645500:intron 35.0%
!!! TTTTTTAGCCGATGTATTCC+CGG - chr4_3:50831173-50831192 Msa0645500:intron 35.0%
AAAATACAAGGAAAGATGCC+GGG + chr4_3:50831194-50831213 None:intergenic 35.0%
GAAAATACAAGGAAAGATGC+CGG + chr4_3:50831195-50831214 None:intergenic 35.0%
ACTTGTAATAACCCCATTAG+TGG - chr4_3:50828763-50828782 Msa0645500:intron 35.0%
CTTGTAATAACCCCATTAGT+GGG - chr4_3:50828764-50828783 Msa0645500:intron 35.0%
GAAAAGTTATCCCACTAATG+GGG + chr4_3:50828777-50828796 None:intergenic 35.0%
GAGAAAAGTTATCCCACTAA+TGG + chr4_3:50828779-50828798 None:intergenic 35.0%
TATTTCTCTCTTTCCTTCCA+TGG - chr4_3:50828842-50828861 Msa0645500:CDS 35.0%
AATGAACCTGTTAGGAAACA+TGG + chr4_3:50831402-50831421 None:intergenic 35.0%
AACTAGACAGAGAATCTGTT+AGG + chr4_3:50831503-50831522 None:intergenic 35.0%
!! AATTTCAGGTTGCTTCAGAA+TGG - chr4_3:50831755-50831774 Msa0645500:CDS 35.0%
TGGTTGTATGTTTATCCAAG+AGG - chr4_3:50831775-50831794 Msa0645500:CDS 35.0%
AAAAAGTCTCGAATTCCTCT+TGG + chr4_3:50831793-50831812 None:intergenic 35.0%
ATGTAAAGGGATACTTTGCA+TGG - chr4_3:50832165-50832184 Msa0645500:CDS 35.0%
! TGGATAATTTTGAATGGCAC+AGG - chr4_3:50832195-50832214 Msa0645500:CDS 35.0%
! GGATAATTTTGAATGGCACA+GGG - chr4_3:50832196-50832215 Msa0645500:CDS 35.0%
! GATAATTTTGAATGGCACAG+GGG - chr4_3:50832197-50832216 Msa0645500:CDS 35.0%
AACACTGCACCATTGCAAAT+AGG - chr4_3:50827309-50827328 Msa0645500:CDS 40.0%
TGGAAGAGGACCAAGTATAT+GGG - chr4_3:50827419-50827438 Msa0645500:intron 40.0%
GGAAGATGTTGGAATCATGA+AGG - chr4_3:50827524-50827543 Msa0645500:intron 40.0%
TTGCCACCAATTCATCAATG+AGG + chr4_3:50827743-50827762 None:intergenic 40.0%
TGTATCACTCACATGATGAG+AGG + chr4_3:50827946-50827965 None:intergenic 40.0%
!!! CCATTTTGACTGTAACTCCA+TGG + chr4_3:50828129-50828148 None:intergenic 40.0%
CCATGGAGTTACAGTCAAAA+TGG - chr4_3:50828126-50828145 Msa0645500:intron 40.0%
TGGTTGAATCCAAATTGCAC+CGG - chr4_3:50828189-50828208 Msa0645500:intron 40.0%
CTACAGACTTTCAGTTTGGA+TGG - chr4_3:50828397-50828416 Msa0645500:intron 40.0%
GAGCAATCTAAGCAAGTCAA+AGG - chr4_3:50828706-50828725 Msa0645500:intron 40.0%
ACATGGTATCAGAGCTAATC+TGG - chr4_3:50828880-50828899 Msa0645500:CDS 40.0%
TAATCTGGTATCCTCCTTGA+AGG - chr4_3:50828895-50828914 Msa0645500:intron 40.0%
! TCGTCTTTTTCCCAAATCCT+AGG - chr4_3:50829173-50829192 Msa0645500:intron 40.0%
! CGTCTTTTTCCCAAATCCTA+GGG - chr4_3:50829174-50829193 Msa0645500:intron 40.0%
TTGTGCTCACAAGATGTTTG+TGG - chr4_3:50829634-50829653 Msa0645500:CDS 40.0%
GCATATGGTTCAGATAGAGT+TGG - chr4_3:50829812-50829831 Msa0645500:intron 40.0%
! TATTGCGTTCAGTTTGGTGA+TGG - chr4_3:50829878-50829897 Msa0645500:intron 40.0%
CTCTGATCCAACATTGCATT+GGG - chr4_3:50829910-50829929 Msa0645500:intron 40.0%
ATGCAATCCCAATGCAATGT+TGG + chr4_3:50829920-50829939 None:intergenic 40.0%
ACATTGCATTGGGATTGCAT+TGG - chr4_3:50829920-50829939 Msa0645500:intron 40.0%
ATTTCTCCAGTTGAGTAGAG+AGG - chr4_3:50830033-50830052 Msa0645500:intron 40.0%
!! TTGTATGTTGCCACTTTGGT+TGG - chr4_3:50830144-50830163 Msa0645500:intron 40.0%
!! TGTATGTTGCCACTTTGGTT+GGG - chr4_3:50830145-50830164 Msa0645500:intron 40.0%
CTGTGCATCATATAGAGTTC+AGG - chr4_3:50830178-50830197 Msa0645500:intron 40.0%
CCAAAATTCATCAACGATCC+AGG + chr4_3:50830439-50830458 None:intergenic 40.0%
!! CCTGGATCGTTGATGAATTT+TGG - chr4_3:50830436-50830455 Msa0645500:intron 40.0%
AACCCAAGAGGATGCTTTAA+AGG + chr4_3:50830467-50830486 None:intergenic 40.0%
GACATCAAAATGAACCCAAG+AGG + chr4_3:50830479-50830498 None:intergenic 40.0%
!! GATGTCTATTGGCTGCATTT+TGG - chr4_3:50830493-50830512 Msa0645500:intron 40.0%
! AAGCTTCATTGTGGAAGCAT+TGG - chr4_3:50830580-50830599 Msa0645500:intron 40.0%
!!! CATTGTGGAAGCATTGGTTT+TGG - chr4_3:50830586-50830605 Msa0645500:intron 40.0%
TGGTTTGAAGACACATCACA+TGG - chr4_3:50830646-50830665 Msa0645500:intron 40.0%
ACATGGCTATGCATCTCTAT+TGG - chr4_3:50830663-50830682 Msa0645500:intron 40.0%
GCCGAGACAAGAAAAACTAA+TGG + chr4_3:50830693-50830712 None:intergenic 40.0%
! TAGTTTTTCTTGTCTCGGCT+TGG - chr4_3:50830694-50830713 Msa0645500:intron 40.0%
!!! GAGGGCATCACTTTTATCTT+TGG - chr4_3:50830722-50830741 Msa0645500:intron 40.0%
!!! AGCTTGGTTTTGTTGCTTCA+TGG - chr4_3:50830746-50830765 Msa0645500:intron 40.0%
!! TTGTTGCTTCATGGTCCTTT+TGG - chr4_3:50830755-50830774 Msa0645500:intron 40.0%
!!! GAGGGCATCACTTTTATCTT+TGG - chr4_3:50830722-50830741 Msa0645500:intron 40.0%
! CTCTTCCTTGCACTTCTTTT+TGG - chr4_3:50830932-50830951 Msa0645500:intron 40.0%
AGCACAAGACAAGAAGAACA+AGG + chr4_3:50830981-50831000 None:intergenic 40.0%
GAGTTCTTGAGAACTCTTGA+TGG - chr4_3:50831009-50831028 Msa0645500:intron 40.0%
! GTTAAGCGTTGTGCCTTAAT+TGG - chr4_3:50831031-50831050 Msa0645500:intron 40.0%
CTCAAGGTTGAACCAATTGA+AGG + chr4_3:50831113-50831132 None:intergenic 40.0%
! ATTGGTTCAACCTTGAGTTG+TGG - chr4_3:50831116-50831135 Msa0645500:intron 40.0%
TTTGAACACCTTCCAACTTG+AGG - chr4_3:50831235-50831254 Msa0645500:CDS 40.0%
TTGAACACCTTCCAACTTGA+GGG - chr4_3:50831236-50831255 Msa0645500:CDS 40.0%
GTACGACGATCCATCATTAT+CGG - chr4_3:50831962-50831981 Msa0645500:CDS 40.0%
GATTCCTCAACCGATAATGA+TGG + chr4_3:50831975-50831994 None:intergenic 40.0%
! AGGGCTGGTGTAAATGTAAA+GGG - chr4_3:50832152-50832171 Msa0645500:CDS 40.0%
ATACTTTGCATGGTCTCTGT+TGG - chr4_3:50832175-50832194 Msa0645500:CDS 40.0%
AGGGGTTATACTGTGAGATT+TGG - chr4_3:50832215-50832234 Msa0645500:CDS 40.0%
ATCAAAAGCTCTCAGGATTG+TGG - chr4_3:50832276-50832295 Msa0645500:five_prime_UTR 40.0%
GTGCCAAATATGAAGCCTTC+TGG + chr4_3:50827357-50827376 None:intergenic 45.0%
! TATGAAGGTGCAGCAAGTGA+AGG - chr4_3:50827396-50827415 Msa0645500:intron 45.0%
GTGGAAGAGGACCAAGTATA+TGG - chr4_3:50827418-50827437 Msa0645500:intron 45.0%
TGGAAACAATGGAGACGTTG+CGG - chr4_3:50827479-50827498 Msa0645500:CDS 45.0%
GCAGAAGGAAAACTAAGTGG+AGG - chr4_3:50827684-50827703 Msa0645500:CDS 45.0%
GGATAACTTTGAACGAGCCA+TGG - chr4_3:50828109-50828128 Msa0645500:intron 45.0%
TGGATATGCAAATGGCGCAA+TGG - chr4_3:50828146-50828165 Msa0645500:intron 45.0%
AACCAAGAAGAACATCGACC+TGG + chr4_3:50828174-50828193 None:intergenic 45.0%
TTGAATCCAAATTGCACCGG+TGG - chr4_3:50828192-50828211 Msa0645500:intron 45.0%
CGAGCTACAGACTTTCAGTT+TGG - chr4_3:50828393-50828412 Msa0645500:intron 45.0%
!! GTAGGCTAACAAGCTCTAGA+TGG + chr4_3:50828480-50828499 None:intergenic 45.0%
TTTATGGATCCCTTGGCCAA+TGG - chr4_3:50828625-50828644 Msa0645500:intron 45.0%
GGATAATCTCCATTGGCCAA+GGG + chr4_3:50828637-50828656 None:intergenic 45.0%
TGGATAATCTCCATTGGCCA+AGG + chr4_3:50828638-50828657 None:intergenic 45.0%
TCCAAAAACCATGCGAGCAT+TGG - chr4_3:50828654-50828673 Msa0645500:intron 45.0%
! ACCAATGCTCGCATGGTTTT+TGG + chr4_3:50828658-50828677 None:intergenic 45.0%
TGATCTTACCAATGCTCGCA+TGG + chr4_3:50828665-50828684 None:intergenic 45.0%
GTTAGGAAACATGGCATCCA+TGG + chr4_3:50828862-50828881 None:intergenic 45.0%
GGATGCCATGTTTCCTAACA+TGG - chr4_3:50828863-50828882 Msa0645500:CDS 45.0%
ATGCAGCGGAAAATCCTTCA+AGG + chr4_3:50828912-50828931 None:intergenic 45.0%
AAATCAGGAACATGACGCAG+AGG + chr4_3:50829007-50829026 None:intergenic 45.0%
CTCCGAACCGAATCAAAGAT+TGG + chr4_3:50829489-50829508 None:intergenic 45.0%
GCTCTGATCCAACATTGCAT+TGG - chr4_3:50829909-50829928 Msa0645500:intron 45.0%
TAGTCCACTGAACTGACATG+CGG + chr4_3:50830101-50830120 None:intergenic 45.0%
TGGCAACATACAACGCATGA+AGG + chr4_3:50830137-50830156 None:intergenic 45.0%
! TGCGTTGTATGTTGCCACTT+TGG - chr4_3:50830140-50830159 Msa0645500:intron 45.0%
!! GTATGTTGCCACTTTGGTTG+GGG - chr4_3:50830146-50830165 Msa0645500:intron 45.0%
!! TTGATGAACTCTGAGACCTC+TGG - chr4_3:50830202-50830221 Msa0645500:intron 45.0%
ATACAAGTATTCCTCGCCAG+AGG + chr4_3:50830221-50830240 None:intergenic 45.0%
! TAACCAGCAAAGCTTTGTGC+AGG + chr4_3:50830382-50830401 None:intergenic 45.0%
ATCAACGATCCAGGGACAAA+GGG + chr4_3:50830430-50830449 None:intergenic 45.0%
!!! GAAGCATTGGTTTTGGCCTA+TGG - chr4_3:50830593-50830612 Msa0645500:intron 45.0%
CCATAGTCAACAATGGAAGG+AGG + chr4_3:50830804-50830823 None:intergenic 45.0%
! CCTCCTTCCATTGTTGACTA+TGG - chr4_3:50830801-50830820 Msa0645500:intron 45.0%
GAGCCATAGTCAACAATGGA+AGG + chr4_3:50830807-50830826 None:intergenic 45.0%
GGAAGAGCCATAGTCAACAA+TGG + chr4_3:50830811-50830830 None:intergenic 45.0%
CTATGGCTCTTCCTTGCATT+TGG - chr4_3:50830818-50830837 Msa0645500:CDS 45.0%
! TGGTTTTTCTTGTCTCGGCT+CGG - chr4_3:50830838-50830857 Msa0645500:CDS 45.0%
GGAGGTCATATGTAAGACCA+AGG + chr4_3:50830894-50830913 None:intergenic 45.0%
CCATAGTCTACAATGGAAGG+AGG + chr4_3:50830912-50830931 None:intergenic 45.0%
CCTCCTTCCATTGTAGACTA+TGG - chr4_3:50830909-50830928 Msa0645500:intron 45.0%
GAGCCATAGTCTACAATGGA+AGG + chr4_3:50830915-50830934 None:intergenic 45.0%
GGAAGAGCCATAGTCTACAA+TGG + chr4_3:50830919-50830938 None:intergenic 45.0%
!! TGATATTGGCTTCTACCGGA+TGG - chr4_3:50831060-50831079 Msa0645500:intron 45.0%
CAAGAAGCAACCACAACTCA+AGG + chr4_3:50831129-50831148 None:intergenic 45.0%
GAGTTGTGGTTGCTTCTTGT+TGG - chr4_3:50831130-50831149 Msa0645500:intron 45.0%
GAAAGATGCCGGGAATACAT+CGG + chr4_3:50831184-50831203 None:intergenic 45.0%
TGAACACCTTCCAACTTGAG+GGG - chr4_3:50831237-50831256 Msa0645500:CDS 45.0%
TCTAATAGTCCCCCTCAAGT+TGG + chr4_3:50831250-50831269 None:intergenic 45.0%
GTTAGGAAACATGGCATCCA+TGG + chr4_3:50828862-50828881 None:intergenic 45.0%
TGGATGCCATGTTTCCTAAC+AGG - chr4_3:50828862-50828881 Msa0645500:CDS 45.0%
CAGAGAATCTGTTAGGTAGC+TGG + chr4_3:50831496-50831515 None:intergenic 45.0%
GCACGAGATGGAAAACCAAT+TGG - chr4_3:50831629-50831648 Msa0645500:intron 45.0%
! CGATCCATCATTATCGGTTG+AGG - chr4_3:50831968-50831987 Msa0645500:CDS 45.0%
CTTTCAATGAAATGCAGGGC+TGG - chr4_3:50832137-50832156 Msa0645500:CDS 45.0%
! CAGGGCTGGTGTAAATGTAA+AGG - chr4_3:50832151-50832170 Msa0645500:CDS 45.0%
CACCAGGTCGATGTTCTTCT+TGG - chr4_3:50828169-50828188 Msa0645500:intron 50.0%
GAATCACCACCGGTGCAATT+TGG + chr4_3:50828201-50828220 None:intergenic 50.0%
! AATTGCACCGGTGGTGATTC+TGG - chr4_3:50828201-50828220 Msa0645500:intron 50.0%
TTCGGTTCCAGAATCACCAC+CGG + chr4_3:50828211-50828230 None:intergenic 50.0%
! AGTGACACAGTCGGAAGTGT+AGG + chr4_3:50828498-50828517 None:intergenic 50.0%
GGAAACATGGCATCCATGGA+AGG + chr4_3:50828858-50828877 None:intergenic 50.0%
CAGCGGAAAATCCTTCAAGG+AGG + chr4_3:50828909-50828928 None:intergenic 50.0%
AGCAGTTACCCCAACCAAAG+TGG + chr4_3:50830157-50830176 None:intergenic 50.0%
ATCCGTGTCTGCTGCTGTAT+GGG - chr4_3:50830242-50830261 Msa0645500:intron 50.0%
AACCCATACAGCAGCAGACA+CGG + chr4_3:50830247-50830266 None:intergenic 50.0%
TGTCCTGCACAAAGCTTTGC+TGG - chr4_3:50830376-50830395 Msa0645500:intron 50.0%
AAAGGGAAAGGTAGTGCAGC+AGG + chr4_3:50830413-50830432 None:intergenic 50.0%
ACTACCTTTCCCTTTGTCCC+TGG - chr4_3:50830418-50830437 Msa0645500:intron 50.0%
CATCAACGATCCAGGGACAA+AGG + chr4_3:50830431-50830450 None:intergenic 50.0%
!! TTCTTGTCTCGGCTTGGCAT+AGG - chr4_3:50830700-50830719 Msa0645500:intron 50.0%
!! TATTGGCTTCTACCGGATGG+TGG - chr4_3:50831063-50831082 Msa0645500:intron 50.0%
AGCAACGCTTAACCACCATC+CGG + chr4_3:50831078-50831097 None:intergenic 50.0%
! GATGGTGGTTAAGCGTTGCT+TGG - chr4_3:50831078-50831097 Msa0645500:intron 50.0%
GAACACCTTCCAACTTGAGG+GGG - chr4_3:50831238-50831257 Msa0645500:CDS 50.0%
!! ATAGTCCCCCTCAAGTTGGA+AGG + chr4_3:50831246-50831265 None:intergenic 50.0%
GGAAACATGGCATCCATGGA+AGG + chr4_3:50828858-50828877 None:intergenic 50.0%
! GAAGGTGCAGCAAGTGAAGG+TGG - chr4_3:50827399-50827418 Msa0645500:intron 55.0%
GCAGCAAGTGAAGGTGGAAG+AGG - chr4_3:50827405-50827424 Msa0645500:intron 55.0%
GCAGCACCTCTCTACTCAAC+TGG + chr4_3:50830042-50830061 None:intergenic 55.0%
ATGCGGCAGCGATTGCTAAG+AGG + chr4_3:50830084-50830103 None:intergenic 55.0%
CATCCGTGTCTGCTGCTGTA+TGG - chr4_3:50830241-50830260 Msa0645500:intron 55.0%
CGATCCAGGGACAAAGGGAA+AGG + chr4_3:50830425-50830444 None:intergenic 55.0%
!! TTGTCTCGGCTTGGCATAGG+AGG - chr4_3:50830703-50830722 Msa0645500:intron 55.0%
!! TGTCTCGGCTTGGCATAGGA+GGG - chr4_3:50830704-50830723 Msa0645500:intron 55.0%
!! TTCTTGTCTCGGCTCGGCAT+AGG - chr4_3:50830844-50830863 Msa0645500:CDS 55.0%
GTGATTGCAGTCGCACGAGA+TGG - chr4_3:50831617-50831636 Msa0645500:intron 55.0%
GCAAATGGCGCAATGGCACC+AGG - chr4_3:50828153-50828172 Msa0645500:intron 60.0%
GCTGCCGCATGTCAGTTCAG+TGG - chr4_3:50830094-50830113 Msa0645500:intron 60.0%
!! GAACTCTGAGACCTCTGGCG+AGG - chr4_3:50830207-50830226 Msa0645500:intron 60.0%
!! TTGTCTCGGCTCGGCATAGG+AGG - chr4_3:50830847-50830866 Msa0645500:intron 60.0%
!! TGTCTCGGCTCGGCATAGGA+GGG - chr4_3:50830848-50830867 Msa0645500:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 50827137 50832352 50827137 ID=Msa0645500;Name=Msa0645500
chr4_3 mRNA 50827137 50832352 50827137 ID=Msa0645500-mRNA-1;Parent=Msa0645500;Name=Msa0645500-mRNA-1;_AED=0.46;_eAED=0.47;_QI=79|0.54|0.5|0.75|1|1|12|0|560
chr4_3 exon 50827137 50827335 50827137 ID=Msa0645500-mRNA-1:exon:12196;Parent=Msa0645500-mRNA-1
chr4_3 exon 50827429 50827537 50827429 ID=Msa0645500-mRNA-1:exon:12195;Parent=Msa0645500-mRNA-1
chr4_3 exon 50827624 50827726 50827624 ID=Msa0645500-mRNA-1:exon:12194;Parent=Msa0645500-mRNA-1
chr4_3 exon 50827831 50827862 50827831 ID=Msa0645500-mRNA-1:exon:12193;Parent=Msa0645500-mRNA-1
chr4_3 exon 50828842 50828906 50828842 ID=Msa0645500-mRNA-1:exon:12192;Parent=Msa0645500-mRNA-1
chr4_3 exon 50829290 50829438 50829290 ID=Msa0645500-mRNA-1:exon:12191;Parent=Msa0645500-mRNA-1
chr4_3 exon 50829543 50829716 50829543 ID=Msa0645500-mRNA-1:exon:12190;Parent=Msa0645500-mRNA-1
chr4_3 exon 50830814 50830865 50830814 ID=Msa0645500-mRNA-1:exon:12189;Parent=Msa0645500-mRNA-1
chr4_3 exon 50831194 50831442 50831194 ID=Msa0645500-mRNA-1:exon:12188;Parent=Msa0645500-mRNA-1
chr4_3 exon 50831536 50831623 50831536 ID=Msa0645500-mRNA-1:exon:12187;Parent=Msa0645500-mRNA-1
chr4_3 exon 50831724 50831801 50831724 ID=Msa0645500-mRNA-1:exon:12186;Parent=Msa0645500-mRNA-1
chr4_3 exon 50831889 50832352 50831889 ID=Msa0645500-mRNA-1:exon:12185;Parent=Msa0645500-mRNA-1
chr4_3 five_prime_UTR 50832274 50832352 50832274 ID=Msa0645500-mRNA-1:five_prime_utr;Parent=Msa0645500-mRNA-1
chr4_3 CDS 50831889 50832273 50831889 ID=Msa0645500-mRNA-1:cds;Parent=Msa0645500-mRNA-1
chr4_3 CDS 50831724 50831801 50831724 ID=Msa0645500-mRNA-1:cds;Parent=Msa0645500-mRNA-1
chr4_3 CDS 50831536 50831623 50831536 ID=Msa0645500-mRNA-1:cds;Parent=Msa0645500-mRNA-1
chr4_3 CDS 50831194 50831442 50831194 ID=Msa0645500-mRNA-1:cds;Parent=Msa0645500-mRNA-1
chr4_3 CDS 50830814 50830865 50830814 ID=Msa0645500-mRNA-1:cds;Parent=Msa0645500-mRNA-1
chr4_3 CDS 50829543 50829716 50829543 ID=Msa0645500-mRNA-1:cds;Parent=Msa0645500-mRNA-1
chr4_3 CDS 50829290 50829438 50829290 ID=Msa0645500-mRNA-1:cds;Parent=Msa0645500-mRNA-1
chr4_3 CDS 50828842 50828906 50828842 ID=Msa0645500-mRNA-1:cds;Parent=Msa0645500-mRNA-1
chr4_3 CDS 50827831 50827862 50827831 ID=Msa0645500-mRNA-1:cds;Parent=Msa0645500-mRNA-1
chr4_3 CDS 50827624 50827726 50827624 ID=Msa0645500-mRNA-1:cds;Parent=Msa0645500-mRNA-1
chr4_3 CDS 50827429 50827537 50827429 ID=Msa0645500-mRNA-1:cds;Parent=Msa0645500-mRNA-1
chr4_3 CDS 50827137 50827335 50827137 ID=Msa0645500-mRNA-1:cds;Parent=Msa0645500-mRNA-1
Gene Sequence

>Msa0645500

ATGACATTAAGCATGAGATATCTCCTATTTTCTCTATTGTTGTCTTTAGCTTCAACATTCATCATTACTTTAACAGAAGGTCAAGAAATAATTAACACTGCACCATTGCAAATAGGTTCATTGAATAGGAATGATTTTCCAGAAGGCTTCATATTTGGCACAGCATCTTCTGCATATCAATATGAAGGTGCAGCAAGTGAAGGTGGAAGAGGACCAAGTATATGGGATACTTTCACTCATAGATATCCTCAAAAGATCAGTGATGGAAACAATGGAGACGTTGCGGTTGATTCGTATCATCGATATAAGGAAGATGTTGGAATCATGAAGGATATGAACTTGGATGCATATAGATTTTCCATTTCTTGGTCTAGAATACTCCCAAAAGGAAAACTAAGTGGAGGAATTAATCAAGAAGGAATTGACTATTACAATAACCTCATTGATGAATTGGTGGCAAATGGTTTACAACCATTTGTAACTCTTTTTCATTGGGATCTTCCTCAATCTCTAGAAGATGAATATGGCGGTTTCTTAAGTCCTCTCATCATAAAAGACTTTCAAAACTACGCGGAACTTTGCTTTAAAACATTTGGAGATAGAGTAAAACATTGGATAACTTTGAACGAGCCATGGAGTTACAGTCAAAATGGATATGCAAATGGCGCAATGGCACCAGGTCGATGTTCTTCTTGGTTGAATCCAAATTGCACCGGTGGTGATTCTGGAACCGAACCTTATTTAACTGCACACTATCAACTTCTAGCACATGCAGCAGCTGTTAATGTCTACAAGACCAAGTTTATGGATCCCTTGGCCAATGGAGATTATCCAAAAACCATGCGAGCATTGGCTGCAATTAGTTCATTTTCTCTGGCTGTATACAATTGTGCATATGGTTCAGATAGAGTTGGATTATACTACTTTGATATTTGGTGTTTTTTGGTCCTTATTGCATATTGCGTTCAGTTTGGTGATGGTGCAATTTGCTCTGATCCAACATTGCATTGGGATTGCATTGGACTTAGAGGTGCTGCTGTTATCCATATAAAGAAGCCTCTTAGCAATCGCTGCCGCATGTCAGTTCAGTGGACTATACTAGTTGTTTACCTTCATGCGTTGTATGTTGCCACTTTGGTTGGGGTAACTGCTGCTGTGCATCATATAGAGTTCAGCTTCATTGTGGAAGCATTGGTTTTGGCCTATGGTTTGAATGCATCAACATGGGTTGTTTTCTATGTCGCACGAGATGGAAAACCAATTGGTCTAAATGTTGCTTCAGAATGGTTGTATGTTTATCCAAGAGGAATTCGAGACTTTTTGATATACGCTAAAGAAAAATACAACAATCCTTTAATTTATATTACTGAAAACGGTATAAATGAGTACGACGATCCATCATTATCGGTTGAGGAATCTCTTTTAGATATTTATAGAATCGATTATCATTACCGTCATCTCTTTTATCTTAAAGAGGCAATCATGGCTGGTGTAAATGTAAAGGGATACTTTGCATGGTCTCTGTTGGATAATTTTGAATGGCACAGGGGTTATACTGTGAGATTTGGAATGATTTTCATAGATTACAAAGATGGTTTGAAAAGATATCAAAAGCTCTCAGGATTGTGGTTCAAGAATTTTCTCACATCAGAGAACAAAAAAGTTTACATAGATTCCATTTAA
Protein sequence

>Msa0645500

MTLSMRYLLFSLLLSLASTFIITLTEGQEIINTAPLQIGSLNRNDFPEGFIFGTASSAYQYEGAASEGGRGPSIWDTFTHRYPQKISDGNNGDVAVDSYHRYKEDVGIMKDMNLDAYRFSISWSRILPKGKLSGGINQEGIDYYNNLIDELVANGLQPFVTLFHWDLPQSLEDEYGGFLSPLIIKDFQNYAELCFKTFGDRVKHWITLNEPWSYSQNGYANGAMAPGRCSSWLNPNCTGGDSGTEPYLTAHYQLLAHAAAVNVYKTKFMDPLANGDYPKTMRALAAISSFSLAVYNCAYGSDRVGLYYFDIWCFLVLIAYCVQFGDGAICSDPTLHWDCIGLRGAAVIHIKKPLSNRCRMSVQWTILVVYLHALYVATLVGVTAAVHHIEFSFIVEALVLAYGLNASTWVVFYVARDGKPIGLNVASEWLYVYPRGIRDFLIYAKEKYNNPLIYITENGINEYDDPSLSVEESLLDIYRIDYHYRHLFYLKEAIMAGVNVKGYFAWSLLDNFEWHRGYTVRFGMIFIDYKDGLKRYQKLSGLWFKNFLTSENKKVYIDSI*