Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0651170 | XP_003607875.1 | 99.035 | 518 | 5 | 0 | 1 | 518 | 1 | 518 | 0.0 | 1060 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0651170 | sp|Q9S735|PHT19_ARATH | 64.078 | 515 | 168 | 7 | 5 | 507 | 4 | 513 | 0.0 | 674 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0610580 | Msa0651170 | 0.842460 | 2.550603e-58 | -8.615850e-47 |
| Msa0651170 | Msa0693240 | 0.843163 | 1.658642e-58 | -8.615850e-47 |
| Msa0651170 | Msa0717860 | 0.814510 | 1.484992e-51 | -8.615850e-47 |
| Msa0651170 | Msa0758520 | 0.828388 | 9.243378e-55 | -8.615850e-47 |
| Msa0651170 | Msa0758570 | 0.834680 | 2.605978e-56 | -8.615850e-47 |
| Msa0651170 | Msa0838870 | 0.819628 | 1.051280e-52 | -8.615850e-47 |
| Msa0651170 | Msa1084890 | 0.804721 | 1.885372e-49 | -8.615850e-47 |
| Msa0185100 | Msa0651170 | 0.819172 | 1.335161e-52 | -8.615850e-47 |
| Msa0193190 | Msa0651170 | 0.800934 | 1.141662e-48 | -8.615850e-47 |
| Msa0234740 | Msa0651170 | 0.808727 | 2.686966e-50 | -8.615850e-47 |
| Msa0273070 | Msa0651170 | 0.802982 | 4.331737e-49 | -8.615850e-47 |
| Msa0578960 | Msa0651170 | 0.844835 | 5.911372e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0651170 | MtrunA17_Chr4g0043571 | 99.035 | 518 | 5 | 0 | 1 | 518 | 1 | 518 | 0.0 | 1060 |
| Msa0651170 | MtrunA17_Chr1g0186821 | 55.075 | 532 | 215 | 10 | 1 | 513 | 1 | 527 | 0.0 | 548 |
| Msa0651170 | MtrunA17_Chr1g0167741 | 54.034 | 533 | 221 | 10 | 1 | 514 | 1 | 528 | 0.0 | 536 |
| Msa0651170 | MtrunA17_Chr1g0167731 | 54.253 | 529 | 222 | 9 | 1 | 514 | 1 | 524 | 0.0 | 536 |
| Msa0651170 | MtrunA17_Chr1g0167761 | 54.221 | 533 | 220 | 10 | 1 | 514 | 1 | 528 | 0.0 | 536 |
| Msa0651170 | MtrunA17_Chr3g0120761 | 55.426 | 516 | 210 | 11 | 1 | 501 | 1 | 511 | 0.0 | 533 |
| Msa0651170 | MtrunA17_Chr1g0183921 | 53.179 | 519 | 223 | 10 | 3 | 508 | 4 | 515 | 0.0 | 528 |
| Msa0651170 | MtrunA17_Chr7g0261231 | 52.751 | 527 | 229 | 11 | 5 | 518 | 6 | 525 | 0.0 | 519 |
| Msa0651170 | MtrunA17_Chr7g0261241 | 52.166 | 531 | 220 | 12 | 5 | 510 | 6 | 527 | 1.40e-177 | 510 |
| Msa0651170 | MtrunA17_Chr1g0186831 | 52.941 | 510 | 212 | 10 | 5 | 501 | 6 | 500 | 1.88e-177 | 509 |
| Msa0651170 | MtrunA17_Chr1g0183911 | 50.662 | 529 | 225 | 12 | 1 | 507 | 1 | 515 | 4.05e-172 | 496 |
| Msa0651170 | MtrunA17_Chr1g0158991 | 49.615 | 520 | 238 | 11 | 4 | 513 | 2 | 507 | 2.31e-163 | 474 |
| Msa0651170 | MtrunA17_Chr5g0428481 | 48.812 | 547 | 234 | 14 | 1 | 514 | 1 | 534 | 5.56e-157 | 458 |
| Msa0651170 | MtrunA17_Chr6g0485661 | 24.951 | 513 | 306 | 17 | 12 | 500 | 45 | 502 | 7.61e-20 | 92.8 |
| Msa0651170 | MtrunA17_Chr7g0214451 | 22.088 | 498 | 310 | 17 | 26 | 505 | 39 | 476 | 3.43e-14 | 75.1 |
| Msa0651170 | MtrunA17_Chr3g0121674 | 24.590 | 305 | 194 | 8 | 211 | 503 | 1 | 281 | 1.71e-13 | 71.2 |
| Msa0651170 | MtrunA17_Chr4g0036021 | 21.503 | 479 | 288 | 15 | 61 | 505 | 60 | 484 | 5.24e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0651170 | AT1G76430.1 | 64.078 | 515 | 168 | 7 | 5 | 507 | 4 | 513 | 0.0 | 674 |
| Msa0651170 | AT1G20860.2 | 63.218 | 522 | 176 | 7 | 5 | 517 | 55 | 569 | 0.0 | 663 |
| Msa0651170 | AT1G20860.1 | 63.218 | 522 | 176 | 7 | 5 | 517 | 3 | 517 | 0.0 | 662 |
| Msa0651170 | AT5G43350.1 | 53.992 | 526 | 218 | 11 | 5 | 513 | 6 | 524 | 0.0 | 539 |
| Msa0651170 | AT5G43360.1 | 54.247 | 518 | 215 | 11 | 5 | 507 | 6 | 516 | 0.0 | 533 |
| Msa0651170 | AT3G54700.2 | 53.728 | 523 | 219 | 11 | 5 | 513 | 6 | 519 | 0.0 | 529 |
| Msa0651170 | AT3G54700.1 | 53.728 | 523 | 219 | 11 | 5 | 513 | 6 | 519 | 0.0 | 529 |
| Msa0651170 | AT2G38940.1 | 54.231 | 520 | 214 | 13 | 1 | 503 | 1 | 513 | 0.0 | 526 |
| Msa0651170 | AT5G43370.1 | 54.183 | 526 | 217 | 11 | 5 | 513 | 6 | 524 | 3.83e-179 | 514 |
| Msa0651170 | AT5G43370.2 | 54.183 | 526 | 217 | 11 | 5 | 513 | 6 | 524 | 3.83e-179 | 514 |
| Msa0651170 | AT2G32830.1 | 51.509 | 530 | 231 | 11 | 3 | 513 | 4 | 526 | 8.52e-178 | 511 |
| Msa0651170 | AT5G43340.1 | 51.758 | 512 | 222 | 10 | 6 | 507 | 8 | 504 | 2.80e-171 | 494 |
| Msa0651170 | AT4G08878.1 | 54.701 | 234 | 90 | 5 | 30 | 252 | 13 | 241 | 1.94e-72 | 232 |
| Msa0651170 | AT4G08895.1 | 42.647 | 136 | 43 | 3 | 318 | 453 | 30 | 130 | 6.27e-27 | 106 |
| Msa0651170 | AT2G43330.1 | 22.081 | 394 | 253 | 10 | 132 | 512 | 131 | 483 | 9.68e-15 | 77.0 |
| Msa0651170 | AT3G18830.1 | 23.774 | 530 | 302 | 21 | 15 | 506 | 31 | 496 | 7.69e-12 | 68.2 |
Find 142 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTTCTTCTTTGCAAATTT+TGG | 0.012899 | 4_3:-58527459 | Msa0651170:CDS |
| TCAACATGTCATGGTATTTC+TGG | 0.184785 | 4_3:-58527381 | Msa0651170:CDS |
| ATGGATTCTCTTCGGTTATT+TGG | 0.195842 | 4_3:+58527898 | None:intergenic |
| AGAAACTACCTGGCAGTTTC+TGG | 0.216451 | 4_3:+58529892 | None:intergenic |
| TTGGATCTGTTGGATTTCTT+TGG | 0.219700 | 4_3:-58527332 | Msa0651170:CDS |
| GGTTTCTTTAGATTCTTCTT+AGG | 0.224645 | 4_3:-58530195 | Msa0651170:CDS |
| TGTCTGAGTTTGCTAATAAA+AGG | 0.237042 | 4_3:-58530131 | Msa0651170:CDS |
| TTTGGTCCAATGAGAGTAAT+AGG | 0.245047 | 4_3:+58527527 | None:intergenic |
| TATGCAAGGGTTTGGTATAT+TGG | 0.253824 | 4_3:-58530076 | Msa0651170:CDS |
| GGTTGACTTGACGGATTTCT+TGG | 0.274248 | 4_3:+58530412 | None:intergenic |
| CAGCTGCATTGACTTATTAT+TGG | 0.282392 | 4_3:-58529927 | Msa0651170:CDS |
| GCTGTTTGCTCTACCATTCC+CGG | 0.304136 | 4_3:-58527651 | Msa0651170:CDS |
| TGGATCTGTTGGATTTCTTT+GGG | 0.310383 | 4_3:-58527331 | Msa0651170:CDS |
| GGAAACTATGGGAAGGTCTT+TGG | 0.311857 | 4_3:-58527193 | Msa0651170:CDS |
| TTTAGATTCTTCTTAGGGCT+TGG | 0.319569 | 4_3:-58530189 | Msa0651170:CDS |
| GGCTAGTGCAACTGTTACTA+TGG | 0.333298 | 4_3:-58530055 | Msa0651170:CDS |
| GCATTTGTGGTTGGTGGTAA+TGG | 0.351217 | 4_3:+58527879 | None:intergenic |
| AACTCTTTCCAGCTAGGTTC+AGG | 0.354273 | 4_3:-58527404 | Msa0651170:CDS |
| GTTTCTTTAGATTCTTCTTA+GGG | 0.354585 | 4_3:-58530194 | Msa0651170:CDS |
| ATCATAACTTTATTCAAAAC+CGG | 0.360814 | 4_3:+58527014 | None:intergenic |
| GCTTGTTAGCATCAATAATA+AGG | 0.362995 | 4_3:+58530278 | None:intergenic |
| AGCTCTCTTTGTTGTACATA+TGG | 0.368396 | 4_3:+58530236 | None:intergenic |
| TCTGGGGCTGTTGGTAAGGT+TGG | 0.368628 | 4_3:-58527363 | Msa0651170:CDS |
| GGACGCCTCGGAGACCTAAA+AGG | 0.373921 | 4_3:-58530324 | Msa0651170:CDS |
| GGTTTCCCTATTACTCTCAT+TGG | 0.377430 | 4_3:-58527533 | Msa0651170:CDS |
| GACATAATGGTAGAAGATAA+AGG | 0.378353 | 4_3:+58530150 | None:intergenic |
| TTCTTCTTAGGGCTTGGAAT+TGG | 0.379282 | 4_3:-58530183 | Msa0651170:CDS |
| TTCTTAGGGCTTGGAATTGG+TGG | 0.382861 | 4_3:-58530180 | Msa0651170:CDS |
| ATTAGCAAACTCAGACATAA+TGG | 0.389302 | 4_3:+58530137 | None:intergenic |
| GGTCTCCGAGGCGTCCGAAT+AGG | 0.396679 | 4_3:+58530331 | None:intergenic |
| ACAATAAAGGTGGTAGTGTT+AGG | 0.397982 | 4_3:+58527435 | None:intergenic |
| TCATGATAACAAAGGGTTCA+TGG | 0.404520 | 4_3:-58527496 | Msa0651170:CDS |
| CTAACAAGCTCTCTAGCTTC+TGG | 0.406505 | 4_3:-58530264 | Msa0651170:CDS |
| CAACATGTCATGGTATTTCT+GGG | 0.410467 | 4_3:-58527380 | Msa0651170:CDS |
| CAACGACCGGGTTGACTTGA+CGG | 0.415324 | 4_3:+58530403 | None:intergenic |
| AAAGGGTTCATGGTTATCTA+TGG | 0.427006 | 4_3:-58527486 | Msa0651170:CDS |
| TGTTACTATGGTGGTTTGCT+TGG | 0.428921 | 4_3:-58530043 | Msa0651170:CDS |
| GGTAAGGTTGGTGCAATCAT+TGG | 0.429582 | 4_3:-58527351 | Msa0651170:CDS |
| AGACCTTCCCATAGTTTCCT+TGG | 0.431457 | 4_3:+58527197 | None:intergenic |
| TATTTCTGGGGCTGTTGGTA+AGG | 0.444891 | 4_3:-58527367 | Msa0651170:CDS |
| GCCTTCGGCCAACTCCTATT+CGG | 0.447789 | 4_3:-58530345 | Msa0651170:CDS |
| AAGAGTTAAAATCCAAATGA+TGG | 0.452565 | 4_3:-58527592 | Msa0651170:CDS |
| GGTGCAATCATTGGATCTGT+TGG | 0.456131 | 4_3:-58527342 | Msa0651170:CDS |
| GTTGGCCGAAGGCGGTTCCT+AGG | 0.459158 | 4_3:+58530355 | None:intergenic |
| CGCCGGAGGCTGACGTTGCA+TGG | 0.463769 | 4_3:-58529978 | Msa0651170:CDS |
| AACACAATACTACCATTTCA+AGG | 0.465634 | 4_3:-58530535 | Msa0651170:CDS |
| TGGTGGTAATGGATTCTCTT+CGG | 0.465888 | 4_3:+58527890 | None:intergenic |
| CAGCTGAACTCTTTCCAGCT+AGG | 0.466833 | 4_3:-58527410 | Msa0651170:CDS |
| GCTTTCATTCCAATCCCCTT+AGG | 0.467608 | 4_3:+58527279 | None:intergenic |
| CTCCATGCAACGTCAGCCTC+CGG | 0.468310 | 4_3:+58529976 | None:intergenic |
| GAGTTCAGCTGGGACAATAA+AGG | 0.470332 | 4_3:+58527422 | None:intergenic |
| ATCGTTTGTATATTTCACTT+TGG | 0.472004 | 4_3:+58527745 | None:intergenic |
| CTTGGAGGGGTGTGCATAGT+GGG | 0.472095 | 4_3:-58527243 | Msa0651170:CDS |
| AAGAATTCTCTTGAAAGAAG+AGG | 0.472184 | 4_3:+58527849 | None:intergenic |
| CATGGATATCCTAAGGGGAT+TGG | 0.474356 | 4_3:-58527288 | Msa0651170:CDS |
| CATGTTGACCTGAACCTAGC+TGG | 0.479877 | 4_3:+58527396 | None:intergenic |
| CTAGCTGGAAAGAGTTCAGC+TGG | 0.480788 | 4_3:+58527411 | None:intergenic |
| AAAGCCTCACTTATCATACT+TGG | 0.482489 | 4_3:-58527261 | Msa0651170:CDS |
| CTCGTCTCCGTCGCACTCCT+AGG | 0.482773 | 4_3:-58530372 | Msa0651170:CDS |
| GGTAGAGCAAACAGCAAGAA+TGG | 0.483548 | 4_3:+58527659 | None:intergenic |
| CTATGATGATGGCCTTGAAA+TGG | 0.485108 | 4_3:+58530523 | None:intergenic |
| CAGCGGTTCGAAGCCGGCGA+CGG | 0.486295 | 4_3:-58530013 | Msa0651170:CDS |
| TTTCACTTTGGAATAGAACT+TGG | 0.486743 | 4_3:+58527757 | None:intergenic |
| AAGAGGGTAGGCAGCATTTG+TGG | 0.490158 | 4_3:+58527866 | None:intergenic |
| GAAAATGGCAAGAGGGTTGA+AGG | 0.490649 | 4_3:-58530583 | None:intergenic |
| CATTAGGTATACAGCATTAG+TGG | 0.491216 | 4_3:-58527979 | Msa0651170:intron |
| TGGAGGTTGATATTGATGAT+TGG | 0.491970 | 4_3:-58529958 | Msa0651170:CDS |
| GAGAAAATCATGATAACAAA+GGG | 0.493974 | 4_3:-58527503 | Msa0651170:CDS |
| ATTTCGCAGCGGTTCGAAGC+CGG | 0.495311 | 4_3:-58530019 | Msa0651170:CDS |
| TTGCAAGATGGAAAGCCTCT+TGG | 0.498386 | 4_3:+58527691 | None:intergenic |
| GCCTCACTTATCATACTTGG+AGG | 0.509162 | 4_3:-58527258 | Msa0651170:CDS |
| TTGACGGATTTCTTGGTGGT+CGG | 0.509656 | 4_3:+58530419 | None:intergenic |
| GAAGGAGCATGGATATCCTA+AGG | 0.510884 | 4_3:-58527295 | Msa0651170:CDS |
| TGGCTTGGATTCTTGCAAGA+TGG | 0.513731 | 4_3:+58527679 | None:intergenic |
| TTGGTCCAATGAGAGTAATA+GGG | 0.517347 | 4_3:+58527528 | None:intergenic |
| GCCATCATCATAGCAGGAAT+GGG | 0.519478 | 4_3:-58530513 | Msa0651170:CDS |
| ACTTGGAGGGGTGTGCATAG+TGG | 0.520704 | 4_3:-58527244 | Msa0651170:CDS |
| TCCCATTCCTGCTATGATGA+TGG | 0.520757 | 4_3:+58530512 | None:intergenic |
| CAAAATCCGAAAATGGCAAG+AGG | 0.521857 | 4_3:-58530591 | None:intergenic |
| GGCCATCATCATAGCAGGAA+TGG | 0.527722 | 4_3:-58530514 | Msa0651170:CDS |
| AGAGTTAAAATCCAAATGAT+GGG | 0.528348 | 4_3:-58527591 | Msa0651170:CDS |
| TTCTTTCAAGAGAATTCTTG+TGG | 0.530678 | 4_3:-58527845 | Msa0651170:CDS |
| TAGGCAGCATTTGTGGTTGG+TGG | 0.531743 | 4_3:+58527873 | None:intergenic |
| AGCAAACAGCAAGAATGGCT+TGG | 0.533200 | 4_3:+58527664 | None:intergenic |
| CATGGTATTTCTGGGGCTGT+TGG | 0.533358 | 4_3:-58527372 | Msa0651170:CDS |
| GGCACATCAAAAGCCGTCGC+CGG | 0.533734 | 4_3:+58530000 | None:intergenic |
| TTCAAGGCCATCATCATAGC+AGG | 0.537123 | 4_3:-58530519 | Msa0651170:CDS |
| TGACTTGACGGATTTCTTGG+TGG | 0.538931 | 4_3:+58530415 | None:intergenic |
| ACGAGGGCTGAGACAACGAC+CGG | 0.541196 | 4_3:+58530390 | None:intergenic |
| GCACTCCTAGGAACCGCCTT+CGG | 0.541368 | 4_3:-58530360 | Msa0651170:CDS |
| AAGGTCTTTGGAAGAGAATG+AGG | 0.545988 | 4_3:-58527181 | Msa0651170:CDS |
| TGATGATGCCAGAAACTGCC+AGG | 0.550572 | 4_3:-58529900 | Msa0651170:intron |
| AAAGGCCGGCGCCACGTCTA+CGG | 0.557844 | 4_3:-58530306 | Msa0651170:CDS |
| CAATAATAAGTCAATGCAGC+TGG | 0.561487 | 4_3:+58529928 | None:intergenic |
| CGAGGCGTCCGAATAGGAGT+TGG | 0.566689 | 4_3:+58530337 | None:intergenic |
| GCCTCGGAGACCTAAAAGGC+CGG | 0.568495 | 4_3:-58530320 | Msa0651170:CDS |
| GGGTAGGCAGCATTTGTGGT+TGG | 0.568959 | 4_3:+58527870 | None:intergenic |
| TTTGCTAATAAAAGGACAAG+AGG | 0.571218 | 4_3:-58530123 | Msa0651170:CDS |
| GGAGAAAATCATGATAACAA+AGG | 0.571581 | 4_3:-58527504 | Msa0651170:CDS |
| AGAATTCTCTTGAAAGAAGA+GGG | 0.572284 | 4_3:+58527850 | None:intergenic |
| CCTCACTTATCATACTTGGA+GGG | 0.573294 | 4_3:-58527257 | Msa0651170:CDS |
| AGAGAATTCTTGTGGCGACA+CGG | 0.577127 | 4_3:-58527837 | Msa0651170:CDS |
| CAACTCCTATTCGGACGCCT+CGG | 0.577300 | 4_3:-58530336 | Msa0651170:CDS |
| CGATACCGTAGACGTGGCGC+CGG | 0.577886 | 4_3:+58530301 | None:intergenic |
| AAGGAGCATGGATATCCTAA+GGG | 0.581879 | 4_3:-58527294 | Msa0651170:CDS |
| GGTGAAGAAGTAGCCGGGAA+TGG | 0.582583 | 4_3:+58527638 | None:intergenic |
| TCCGAATAGGAGTTGGCCGA+AGG | 0.586471 | 4_3:+58530344 | None:intergenic |
| TAGACGGTGAAGAAGTAGCC+GGG | 0.588557 | 4_3:+58527633 | None:intergenic |
| CTAGGAGTGCGACGGAGACG+AGG | 0.589067 | 4_3:+58530373 | None:intergenic |
| TATTACTCTCATTGGACCAA+AGG | 0.589189 | 4_3:-58527525 | Msa0651170:CDS |
| ACACTCATCACAAAGATGCT+AGG | 0.592024 | 4_3:-58530456 | Msa0651170:CDS |
| TAGTGCAACTGTTACTATGG+TGG | 0.593095 | 4_3:-58530052 | Msa0651170:CDS |
| TCACATAAAGAGAAGGAGCA+TGG | 0.593312 | 4_3:-58527306 | Msa0651170:CDS |
| GGTTCTATCAGCCCTTGACT+CGG | 0.593955 | 4_3:-58530562 | Msa0651170:CDS |
| TTGGGCATCACATAAAGAGA+AGG | 0.594444 | 4_3:-58527313 | Msa0651170:CDS |
| GTAGACGGTGAAGAAGTAGC+CGG | 0.596248 | 4_3:+58527632 | None:intergenic |
| CTCACTTATCATACTTGGAG+GGG | 0.600686 | 4_3:-58527256 | Msa0651170:CDS |
| TTCTCTTGAAAGAAGAGGGT+AGG | 0.600721 | 4_3:+58527854 | None:intergenic |
| TCACCAAGGAAACTATGGGA+AGG | 0.613776 | 4_3:-58527200 | Msa0651170:CDS |
| AGGTTCAGGTCAACATGTCA+TGG | 0.614954 | 4_3:-58527390 | Msa0651170:CDS |
| CATGCAACGTCAGCCTCCGG+CGG | 0.616211 | 4_3:+58529979 | None:intergenic |
| AAGAGGTTCTTTCATAGCTG+CGG | 0.616245 | 4_3:-58530106 | Msa0651170:CDS |
| CATCTTTGTGATGAGTGTGA+TGG | 0.618124 | 4_3:+58530461 | None:intergenic |
| AACATGTCATGGTATTTCTG+GGG | 0.624270 | 4_3:-58527379 | Msa0651170:CDS |
| GAATAGGAGTTGGCCGAAGG+CGG | 0.628666 | 4_3:+58530347 | None:intergenic |
| TGATGAGTGTGATGGAGAAG+AGG | 0.629463 | 4_3:+58530469 | None:intergenic |
| GGCGGTTCCTAGGAGTGCGA+CGG | 0.633327 | 4_3:+58530365 | None:intergenic |
| AAAATCCGAAAATGGCAAGA+GGG | 0.638563 | 4_3:-58530590 | None:intergenic |
| CGAGGGCTGAGACAACGACC+GGG | 0.642058 | 4_3:+58530391 | None:intergenic |
| TAGGAGTGCGACGGAGACGA+GGG | 0.643293 | 4_3:+58530374 | None:intergenic |
| AGAAATCCGTCAAGTCAACC+CGG | 0.643622 | 4_3:-58530409 | Msa0651170:CDS |
| TGAAGAAGATGTGTACCAAG+AGG | 0.649402 | 4_3:-58527706 | Msa0651170:CDS |
| GTTGCAAGCTGCAAAAGACA+TGG | 0.660760 | 4_3:-58527946 | Msa0651170:CDS |
| TTCAGCTGGGACAATAAAGG+TGG | 0.666270 | 4_3:+58527425 | None:intergenic |
| TAGCTGGAAAGAGTTCAGCT+GGG | 0.667181 | 4_3:+58527412 | None:intergenic |
| CCCTCCAAGTATGATAAGTG+AGG | 0.670122 | 4_3:+58527257 | None:intergenic |
| TACGCGATCGATGAAGTAGA+CGG | 0.672938 | 4_3:+58527617 | None:intergenic |
| GTTTGCTTGGTATTTCGCAG+CGG | 0.690623 | 4_3:-58530030 | Msa0651170:CDS |
| CGGAGGCTGACGTTGCATGG+AGG | 0.694489 | 4_3:-58529975 | Msa0651170:CDS |
| AGGAGCATGGATATCCTAAG+GGG | 0.695397 | 4_3:-58527293 | Msa0651170:CDS |
| ATAAGGCGATACCGTAGACG+TGG | 0.708896 | 4_3:+58530295 | None:intergenic |
| GTCTACTTCATCGATCGCGT+AGG | 0.713972 | 4_3:-58527615 | Msa0651170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATATTATATATAAAA+AGG | - | chr4_3:58527813-58527832 | Msa0651170:CDS | 0.0% |
| !! | AAATATATTATATATAAAAA+GGG | - | chr4_3:58527814-58527833 | Msa0651170:CDS | 0.0% |
| !!! | TAAAATTTTAAAATTTTATA+AGG | + | chr4_3:58528376-58528395 | None:intergenic | 0.0% |
| !!! | TGGTTTTTTTTTTTTTTAAA+TGG | - | chr4_3:58527789-58527808 | Msa0651170:CDS | 10.0% |
| !! | TTAAATTCAAATGAAAATAA+TGG | - | chr4_3:58528697-58528716 | Msa0651170:intron | 10.0% |
| !! | TATAAAATTTAAATTCAACT+AGG | + | chr4_3:58528788-58528807 | None:intergenic | 10.0% |
| !! | TTAAATATACTAAGTATAGA+GGG | + | chr4_3:58527750-58527769 | None:intergenic | 15.0% |
| !! | ATTAAATATACTAAGTATAG+AGG | + | chr4_3:58527751-58527770 | None:intergenic | 15.0% |
| !!! | GTGTATTTTTATTTTCTTTT+TGG | + | chr4_3:58527860-58527879 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAATGAACACT+TGG | + | chr4_3:58528114-58528133 | None:intergenic | 15.0% |
| !!! | TTCTAACTATTTTTAATGTT+CGG | + | chr4_3:58528296-58528315 | None:intergenic | 15.0% |
| !!! | TAAAGACTATCTAAAAATTT+TGG | - | chr4_3:58528442-58528461 | Msa0651170:intron | 15.0% |
| !! | ACAAAATGCATTATTTAAAA+GGG | + | chr4_3:58528586-58528605 | None:intergenic | 15.0% |
| !! | CTAAAACATTGTTAATTAAA+TGG | + | chr4_3:58528858-58528877 | None:intergenic | 15.0% |
| !! | AACTTATTATCGAAATAAAT+TGG | + | chr4_3:58529344-58529363 | None:intergenic | 15.0% |
| !!! | ATTCTTAAATATCTGAAGTT+TGG | - | chr4_3:58527769-58527788 | Msa0651170:CDS | 20.0% |
| !!! | TATGTATCCAAGAAAATTTT+AGG | - | chr4_3:58528085-58528104 | Msa0651170:intron | 20.0% |
| !!! | TTTTAGATAGTCTTTATTTG+TGG | + | chr4_3:58528438-58528457 | None:intergenic | 20.0% |
| !! | AAAATATATTGATGTCTTTG+TGG | + | chr4_3:58528475-58528494 | None:intergenic | 20.0% |
| !! | CACAAAATGCATTATTTAAA+AGG | + | chr4_3:58528587-58528606 | None:intergenic | 20.0% |
| !! | ATGGCATTAATTAAATGTAT+TGG | - | chr4_3:58528716-58528735 | Msa0651170:intron | 20.0% |
| !!! | TTAATTAAATGTATTGGCAA+AGG | - | chr4_3:58528722-58528741 | Msa0651170:intron | 20.0% |
| !!! | GCATTTTCTATACTAATTAT+TGG | + | chr4_3:58529055-58529074 | None:intergenic | 20.0% |
| !! | TAATTAGTATAGAAAATGCA+AGG | - | chr4_3:58529056-58529075 | Msa0651170:intron | 20.0% |
| !! | AATAACATTATCTTGTTACT+AGG | - | chr4_3:58529150-58529169 | Msa0651170:intron | 20.0% |
| !! | ATAACATTATCTTGTTACTA+GGG | - | chr4_3:58529151-58529170 | Msa0651170:intron | 20.0% |
| !! | TTACGGACAAAAAAAAAAAT+TGG | + | chr4_3:58529192-58529211 | None:intergenic | 20.0% |
| !!! | AATTGAAGTACTATTATGTT+CGG | + | chr4_3:58529502-58529521 | None:intergenic | 20.0% |
| !! | ATCATAACTTTATTCAAAAC+CGG | + | chr4_3:58530579-58530598 | None:intergenic | 20.0% |
| ! | GTTTCTTTAGATTCTTCTTA+GGG | - | chr4_3:58527396-58527415 | Msa0651170:CDS | 25.0% |
| !!! | TTCTTTTTGGTGTATTACTT+GGG | + | chr4_3:58527847-58527866 | None:intergenic | 25.0% |
| !!! | TTTCTTTTTGGTGTATTACT+TGG | + | chr4_3:58527848-58527867 | None:intergenic | 25.0% |
| !! | TTGGTATCCTAAAATTTTCT+TGG | + | chr4_3:58528095-58528114 | None:intergenic | 25.0% |
| ! | TATCCGTTAACAAGATATTT+AGG | + | chr4_3:58528186-58528205 | None:intergenic | 25.0% |
| ! | ATATAAGAAAGTCATAGGTA+CGG | + | chr4_3:58528645-58528664 | None:intergenic | 25.0% |
| ! | TACCTATGACTTTCTTATAT+GGG | - | chr4_3:58528645-58528664 | Msa0651170:intron | 25.0% |
| ! | CAAAAAATGTCCATTTCAAA+TGG | + | chr4_3:58528672-58528691 | None:intergenic | 25.0% |
| !!! | CATTTGAAATGGACATTTTT+TGG | - | chr4_3:58528670-58528689 | Msa0651170:intron | 25.0% |
| ! | AAATGGTTAAACTTACTTGA+AGG | + | chr4_3:58528841-58528860 | None:intergenic | 25.0% |
| !!! | AACAATGTTTTAGTCAAAGA+AGG | - | chr4_3:58528865-58528884 | Msa0651170:intron | 25.0% |
| ! | AATTATTGGCATTCTCTTAT+TGG | + | chr4_3:58529041-58529060 | None:intergenic | 25.0% |
| !! | AAGGCTGATTTAATTTAAAG+CGG | - | chr4_3:58529075-58529094 | Msa0651170:intron | 25.0% |
| ! | TAAATTAGAATCGACAAAGT+TGG | + | chr4_3:58529373-58529392 | None:intergenic | 25.0% |
| !! | CATTGCATTTTTAATGTTCA+TGG | - | chr4_3:58529551-58529570 | Msa0651170:intron | 25.0% |
| ! | AACAATTGAATAACGTACTA+TGG | - | chr4_3:58529582-58529601 | Msa0651170:intron | 25.0% |
| ! | ATCGTTTGTATATTTCACTT+TGG | + | chr4_3:58529848-58529867 | None:intergenic | 25.0% |
| ! | AAGAGTTAAAATCCAAATGA+TGG | - | chr4_3:58529998-58530017 | Msa0651170:CDS | 25.0% |
| ! | AGAGTTAAAATCCAAATGAT+GGG | - | chr4_3:58529999-58530018 | Msa0651170:CDS | 25.0% |
| ! | GAGAAAATCATGATAACAAA+GGG | - | chr4_3:58530087-58530106 | Msa0651170:CDS | 25.0% |
| AACACAATACTACCATTTCA+AGG | - | chr4_3:58527055-58527074 | Msa0651170:three_prime_UTR | 30.0% | |
| ! | GCTTGTTAGCATCAATAATA+AGG | + | chr4_3:58527315-58527334 | None:intergenic | 30.0% |
| GGTTTCTTTAGATTCTTCTT+AGG | - | chr4_3:58527395-58527414 | Msa0651170:CDS | 30.0% | |
| GACATAATGGTAGAAGATAA+AGG | + | chr4_3:58527443-58527462 | None:intergenic | 30.0% | |
| ATTAGCAAACTCAGACATAA+TGG | + | chr4_3:58527456-58527475 | None:intergenic | 30.0% | |
| !! | TGTCTGAGTTTGCTAATAAA+AGG | - | chr4_3:58527459-58527478 | Msa0651170:CDS | 30.0% |
| TTTGCTAATAAAAGGACAAG+AGG | - | chr4_3:58527467-58527486 | Msa0651170:CDS | 30.0% | |
| TTAAATATGCGAAGTAGAGA+GGG | + | chr4_3:58527727-58527746 | None:intergenic | 30.0% | |
| CAACCAAACTTCAGATATAT+GGG | + | chr4_3:58527890-58527909 | None:intergenic | 30.0% | |
| TCAACCAAACTTCAGATATA+TGG | + | chr4_3:58527891-58527910 | None:intergenic | 30.0% | |
| TGGTATCAATGAAGTTTGAT+GGG | + | chr4_3:58527950-58527969 | None:intergenic | 30.0% | |
| GAGCCTAAATATCTTGTTAA+CGG | - | chr4_3:58528180-58528199 | Msa0651170:intron | 30.0% | |
| GTACCTATGACTTTCTTATA+TGG | - | chr4_3:58528644-58528663 | Msa0651170:intron | 30.0% | |
| TTATATGGGTCCATTTGAAA+TGG | - | chr4_3:58528659-58528678 | Msa0651170:intron | 30.0% | |
| !!! | TGTTTTAGTCAAAGAAGGAA+TGG | - | chr4_3:58528870-58528889 | Msa0651170:intron | 30.0% |
| AAAGAAGGAATGGAATAGAA+AGG | - | chr4_3:58528880-58528899 | Msa0651170:intron | 30.0% | |
| ! | AGGCTGATTTAATTTAAAGC+GGG | - | chr4_3:58529076-58529095 | Msa0651170:intron | 30.0% |
| CTAAATTCGAACTCGTATTA+AGG | - | chr4_3:58529259-58529278 | Msa0651170:intron | 30.0% | |
| TTGAAAACCTTATCTGAATC+TGG | - | chr4_3:58529466-58529485 | Msa0651170:intron | 30.0% | |
| AGAATTCTCTTGAAAGAAGA+GGG | + | chr4_3:58529743-58529762 | None:intergenic | 30.0% | |
| AAGAATTCTCTTGAAAGAAG+AGG | + | chr4_3:58529744-58529763 | None:intergenic | 30.0% | |
| TTCTTTCAAGAGAATTCTTG+TGG | - | chr4_3:58529745-58529764 | Msa0651170:intron | 30.0% | |
| ! | TTTTTGCATGTTCTGCTAAT+TGG | - | chr4_3:58529784-58529803 | Msa0651170:intron | 30.0% |
| !! | TTTCACTTTGGAATAGAACT+TGG | + | chr4_3:58529836-58529855 | None:intergenic | 30.0% |
| TGAAGAAAAAACCCATCATT+TGG | + | chr4_3:58530013-58530032 | None:intergenic | 30.0% | |
| !!! | AATGATGGGTTTTTTCTTCA+TGG | - | chr4_3:58530013-58530032 | Msa0651170:CDS | 30.0% |
| !!! | CAGTGTCATTTTTTGCTTTA+GGG | - | chr4_3:58530036-58530055 | Msa0651170:CDS | 30.0% |
| ! | GTTATCATGATTTTCTCCTT+TGG | + | chr4_3:58530084-58530103 | None:intergenic | 30.0% |
| GGAGAAAATCATGATAACAA+AGG | - | chr4_3:58530086-58530105 | Msa0651170:CDS | 30.0% | |
| ! | GCTTTCTTCTTTGCAAATTT+TGG | - | chr4_3:58530131-58530150 | Msa0651170:CDS | 30.0% |
| !!! | TGTTACTTACTTTTTCACCA+AGG | - | chr4_3:58530376-58530395 | Msa0651170:CDS | 30.0% |
| ! | TTTTTCACCAAGGAAACTAT+GGG | - | chr4_3:58530386-58530405 | Msa0651170:CDS | 30.0% |
| ! | AAACAAAAATGTTAGCCTAG+TGG | - | chr4_3:58530536-58530555 | Msa0651170:CDS | 30.0% |
| ! | ACAAGTAGATTTTTACCACT+AGG | + | chr4_3:58530554-58530573 | None:intergenic | 30.0% |
| ! | AGCTCTCTTTGTTGTACATA+TGG | + | chr4_3:58527357-58527376 | None:intergenic | 35.0% |
| ! | GCTTGTGTTTTACTATCTCT+TGG | - | chr4_3:58527374-58527393 | Msa0651170:CDS | 35.0% |
| TTTAGATTCTTCTTAGGGCT+TGG | - | chr4_3:58527401-58527420 | Msa0651170:CDS | 35.0% | |
| !!! | GTTTTTTCTATGCAAGGGTT+TGG | - | chr4_3:58527506-58527525 | Msa0651170:CDS | 35.0% |
| ! | TATGCAAGGGTTTGGTATAT+TGG | - | chr4_3:58527514-58527533 | Msa0651170:CDS | 35.0% |
| !! | TGGAGGTTGATATTGATGAT+TGG | - | chr4_3:58527632-58527651 | Msa0651170:CDS | 35.0% |
| CAATAATAAGTCAATGCAGC+TGG | + | chr4_3:58527665-58527684 | None:intergenic | 35.0% | |
| !! | CAGCTGCATTGACTTATTAT+TGG | - | chr4_3:58527663-58527682 | Msa0651170:CDS | 35.0% |
| TAAATATGCGAAGTAGAGAG+GGG | + | chr4_3:58527726-58527745 | None:intergenic | 35.0% | |
| GTTAAATATGCGAAGTAGAG+AGG | + | chr4_3:58527728-58527747 | None:intergenic | 35.0% | |
| ! | CTTCAGATATATGGGTGTTT+TGG | + | chr4_3:58527882-58527901 | None:intergenic | 35.0% |
| ! | ACACCCATATATCTGAAGTT+TGG | - | chr4_3:58527884-58527903 | Msa0651170:CDS | 35.0% |
| GTGGTATCAATGAAGTTTGA+TGG | + | chr4_3:58527951-58527970 | None:intergenic | 35.0% | |
| CACAAAAAATGAACGAACAG+TGG | + | chr4_3:58527970-58527989 | None:intergenic | 35.0% | |
| !!! | CTGTTCGTTCATTTTTTGTG+TGG | - | chr4_3:58527970-58527989 | Msa0651170:CDS | 35.0% |
| GGTAGGTAAATTAACACGAT+AGG | + | chr4_3:58528144-58528163 | None:intergenic | 35.0% | |
| CGTGTTAATTTACCTACCTT+TGG | - | chr4_3:58528146-58528165 | Msa0651170:intron | 35.0% | |
| ! | TCTTGTTAACGGATACTCAA+TGG | - | chr4_3:58528191-58528210 | Msa0651170:intron | 35.0% |
| GACCCATATAAGAAAGTCAT+AGG | + | chr4_3:58528650-58528669 | None:intergenic | 35.0% | |
| ATTAAATTCCTTGCGTCATG+CGG | - | chr4_3:58528934-58528953 | Msa0651170:intron | 35.0% | |
| ! | CTGATTTAATTTAAAGCGGG+TGG | - | chr4_3:58529079-58529098 | Msa0651170:intron | 35.0% |
| ACATTATCTTGTTACTAGGG+AGG | - | chr4_3:58529154-58529173 | Msa0651170:intron | 35.0% | |
| !!! | TTTTTTGTCCGTAAACGAAG+TGG | - | chr4_3:58529198-58529217 | Msa0651170:intron | 35.0% |
| CAATGTCGATATTGTTAGGT+TGG | + | chr4_3:58529288-58529307 | None:intergenic | 35.0% | |
| CTGACAATGTCGATATTGTT+AGG | + | chr4_3:58529292-58529311 | None:intergenic | 35.0% | |
| GAATTCAGTTGATCATCTTG+TGG | - | chr4_3:58529400-58529419 | Msa0651170:intron | 35.0% | |
| TACTATTATGTTCGGCTAAG+TGG | + | chr4_3:58529494-58529513 | None:intergenic | 35.0% | |
| CATTAGGTATACAGCATTAG+TGG | - | chr4_3:58529611-58529630 | Msa0651170:intron | 35.0% | |
| ATGGATTCTCTTCGGTTATT+TGG | + | chr4_3:58529695-58529714 | None:intergenic | 35.0% | |
| !! | CTTCTTCATCTTTTTCGTTG+AGG | + | chr4_3:58529872-58529891 | None:intergenic | 35.0% |
| !!! | GCAGTGTCATTTTTTGCTTT+AGG | - | chr4_3:58530035-58530054 | Msa0651170:CDS | 35.0% |
| TTGGTCCAATGAGAGTAATA+GGG | + | chr4_3:58530065-58530084 | None:intergenic | 35.0% | |
| TTTGGTCCAATGAGAGTAAT+AGG | + | chr4_3:58530066-58530085 | None:intergenic | 35.0% | |
| TATTACTCTCATTGGACCAA+AGG | - | chr4_3:58530065-58530084 | Msa0651170:CDS | 35.0% | |
| TCATGATAACAAAGGGTTCA+TGG | - | chr4_3:58530094-58530113 | Msa0651170:CDS | 35.0% | |
| AAAGGGTTCATGGTTATCTA+TGG | - | chr4_3:58530104-58530123 | Msa0651170:CDS | 35.0% | |
| ! | ACAATAAAGGTGGTAGTGTT+AGG | + | chr4_3:58530158-58530177 | None:intergenic | 35.0% |
| TCAACATGTCATGGTATTTC+TGG | - | chr4_3:58530209-58530228 | Msa0651170:CDS | 35.0% | |
| CAACATGTCATGGTATTTCT+GGG | - | chr4_3:58530210-58530229 | Msa0651170:CDS | 35.0% | |
| ! | AACATGTCATGGTATTTCTG+GGG | - | chr4_3:58530211-58530230 | Msa0651170:CDS | 35.0% |
| TTGGATCTGTTGGATTTCTT+TGG | - | chr4_3:58530258-58530277 | Msa0651170:CDS | 35.0% | |
| TGGATCTGTTGGATTTCTTT+GGG | - | chr4_3:58530259-58530278 | Msa0651170:CDS | 35.0% | |
| AAAGCCTCACTTATCATACT+TGG | - | chr4_3:58530329-58530348 | Msa0651170:CDS | 35.0% | |
| !! | CTTTTTCACCAAGGAAACTA+TGG | - | chr4_3:58530385-58530404 | Msa0651170:CDS | 35.0% |
| ! | GGTAAAAATCTACTTGTTGC+CGG | - | chr4_3:58530557-58530576 | Msa0651170:CDS | 35.0% |
| !! | TTGTGTTTTTGCCGAGTCAA+GGG | + | chr4_3:58527042-58527061 | None:intergenic | 40.0% |
| !! | ATTGTGTTTTTGCCGAGTCA+AGG | + | chr4_3:58527043-58527062 | None:intergenic | 40.0% |
| !! | CTATGATGATGGCCTTGAAA+TGG | + | chr4_3:58527070-58527089 | None:intergenic | 40.0% |
| CATCTTTGTGATGAGTGTGA+TGG | + | chr4_3:58527132-58527151 | None:intergenic | 40.0% | |
| ACACTCATCACAAAGATGCT+AGG | - | chr4_3:58527134-58527153 | Msa0651170:exon | 40.0% | |
| TTCTTCTTAGGGCTTGGAAT+TGG | - | chr4_3:58527407-58527426 | Msa0651170:CDS | 40.0% | |
| AAGAGGTTCTTTCATAGCTG+CGG | - | chr4_3:58527484-58527503 | Msa0651170:CDS | 40.0% | |
| !!! | CTGCGGTTTTTTCTATGCAA+GGG | - | chr4_3:58527501-58527520 | Msa0651170:CDS | 40.0% |
| TAGTGCAACTGTTACTATGG+TGG | - | chr4_3:58527538-58527557 | Msa0651170:CDS | 40.0% | |
| !! | TGTTACTATGGTGGTTTGCT+TGG | - | chr4_3:58527547-58527566 | Msa0651170:CDS | 40.0% |
| CGACATTAGAAACCAAAGGT+AGG | + | chr4_3:58528161-58528180 | None:intergenic | 40.0% | |
| CGTGTTTACCACTTCGTTTA+CGG | + | chr4_3:58529209-58529228 | None:intergenic | 40.0% | |
| AGTGGAACCAGATTCAGATA+AGG | + | chr4_3:58529476-58529495 | None:intergenic | 40.0% | |
| !! | TGGTGGTAATGGATTCTCTT+CGG | + | chr4_3:58529703-58529722 | None:intergenic | 40.0% |
| TTCTCTTGAAAGAAGAGGGT+AGG | + | chr4_3:58529739-58529758 | None:intergenic | 40.0% | |
| TGAAGAAGATGTGTACCAAG+AGG | - | chr4_3:58529884-58529903 | Msa0651170:intron | 40.0% | |
| GGTTTCCCTATTACTCTCAT+TGG | - | chr4_3:58530057-58530076 | Msa0651170:CDS | 40.0% | |
| TTGGGCATCACATAAAGAGA+AGG | - | chr4_3:58530277-58530296 | Msa0651170:CDS | 40.0% | |
| TCACATAAAGAGAAGGAGCA+TGG | - | chr4_3:58530284-58530303 | Msa0651170:CDS | 40.0% | |
| ! | AAGGAGCATGGATATCCTAA+GGG | - | chr4_3:58530296-58530315 | Msa0651170:CDS | 40.0% |
| CCTCACTTATCATACTTGGA+GGG | - | chr4_3:58530333-58530352 | Msa0651170:CDS | 40.0% | |
| CTCACTTATCATACTTGGAG+GGG | - | chr4_3:58530334-58530353 | Msa0651170:CDS | 40.0% | |
| ! | AAGGTCTTTGGAAGAGAATG+AGG | - | chr4_3:58530409-58530428 | Msa0651170:CDS | 40.0% |
| TTCAAGGCCATCATCATAGC+AGG | - | chr4_3:58527071-58527090 | Msa0651170:three_prime_UTR | 45.0% | |
| GCCATCATCATAGCAGGAAT+GGG | - | chr4_3:58527077-58527096 | Msa0651170:three_prime_UTR | 45.0% | |
| TCCCATTCCTGCTATGATGA+TGG | + | chr4_3:58527081-58527100 | None:intergenic | 45.0% | |
| ! | TGATGAGTGTGATGGAGAAG+AGG | + | chr4_3:58527124-58527143 | None:intergenic | 45.0% |
| !! | TTGACGGATTTCTTGGTGGT+CGG | + | chr4_3:58527174-58527193 | None:intergenic | 45.0% |
| !! | TGACTTGACGGATTTCTTGG+TGG | + | chr4_3:58527178-58527197 | None:intergenic | 45.0% |
| !! | GGTTGACTTGACGGATTTCT+TGG | + | chr4_3:58527181-58527200 | None:intergenic | 45.0% |
| AGAAATCCGTCAAGTCAACC+CGG | - | chr4_3:58527181-58527200 | Msa0651170:CDS | 45.0% | |
| ! | CTAACAAGCTCTCTAGCTTC+TGG | - | chr4_3:58527326-58527345 | Msa0651170:CDS | 45.0% |
| TTCTTAGGGCTTGGAATTGG+TGG | - | chr4_3:58527410-58527429 | Msa0651170:CDS | 45.0% | |
| !!! | GCTGCGGTTTTTTCTATGCA+AGG | - | chr4_3:58527500-58527519 | Msa0651170:CDS | 45.0% |
| GGCTAGTGCAACTGTTACTA+TGG | - | chr4_3:58527535-58527554 | Msa0651170:CDS | 45.0% | |
| GTTTGCTTGGTATTTCGCAG+CGG | - | chr4_3:58527560-58527579 | Msa0651170:CDS | 45.0% | |
| AGAAACTACCTGGCAGTTTC+TGG | + | chr4_3:58527701-58527720 | None:intergenic | 45.0% | |
| GGCTCGACATTAGAAACCAA+AGG | + | chr4_3:58528165-58528184 | None:intergenic | 45.0% | |
| TCATCGATCAGTCCTTGTCT+TGG | - | chr4_3:58528814-58528833 | Msa0651170:intron | 45.0% | |
| CATCGATCAGTCCTTGTCTT+GGG | - | chr4_3:58528815-58528834 | Msa0651170:intron | 45.0% | |
| TTACTTGAAGGCCCAAGACA+AGG | + | chr4_3:58528829-58528848 | None:intergenic | 45.0% | |
| ATAGAAAGGAACCATCCACG+TGG | - | chr4_3:58528894-58528913 | Msa0651170:intron | 45.0% | |
| ACAAAGCAAATCCACGTGGA+TGG | + | chr4_3:58528908-58528927 | None:intergenic | 45.0% | |
| GCAAACAAAGCAAATCCACG+TGG | + | chr4_3:58528912-58528931 | None:intergenic | 45.0% | |
| AACTTAAACCGCATGACGCA+AGG | + | chr4_3:58528945-58528964 | None:intergenic | 45.0% | |
| ! | ATTTAAAGCGGGTGGAAGTG+AGG | - | chr4_3:58529087-58529106 | Msa0651170:intron | 45.0% |
| TCGACATTGTCAGTTGCGTT+AGG | - | chr4_3:58529299-58529318 | Msa0651170:intron | 45.0% | |
| CGTACTATGGTGTGTGCATT+AGG | - | chr4_3:58529595-58529614 | Msa0651170:intron | 45.0% | |
| GTTGCAAGCTGCAAAAGACA+TGG | - | chr4_3:58529644-58529663 | Msa0651170:intron | 45.0% | |
| !! | GCATTTGTGGTTGGTGGTAA+TGG | + | chr4_3:58529714-58529733 | None:intergenic | 45.0% |
| AGAGAATTCTTGTGGCGACA+CGG | - | chr4_3:58529753-58529772 | Msa0651170:intron | 45.0% | |
| TTGCAAGATGGAAAGCCTCT+TGG | + | chr4_3:58529902-58529921 | None:intergenic | 45.0% | |
| ! | TGGCTTGGATTCTTGCAAGA+TGG | + | chr4_3:58529914-58529933 | None:intergenic | 45.0% |
| AGCAAACAGCAAGAATGGCT+TGG | + | chr4_3:58529929-58529948 | None:intergenic | 45.0% | |
| GGTAGAGCAAACAGCAAGAA+TGG | + | chr4_3:58529934-58529953 | None:intergenic | 45.0% | |
| TACGCGATCGATGAAGTAGA+CGG | + | chr4_3:58529976-58529995 | None:intergenic | 45.0% | |
| TTCAGCTGGGACAATAAAGG+TGG | + | chr4_3:58530168-58530187 | None:intergenic | 45.0% | |
| GAGTTCAGCTGGGACAATAA+AGG | + | chr4_3:58530171-58530190 | None:intergenic | 45.0% | |
| TAGCTGGAAAGAGTTCAGCT+GGG | + | chr4_3:58530181-58530200 | None:intergenic | 45.0% | |
| AACTCTTTCCAGCTAGGTTC+AGG | - | chr4_3:58530186-58530205 | Msa0651170:CDS | 45.0% | |
| AGGTTCAGGTCAACATGTCA+TGG | - | chr4_3:58530200-58530219 | Msa0651170:CDS | 45.0% | |
| !! | TATTTCTGGGGCTGTTGGTA+AGG | - | chr4_3:58530223-58530242 | Msa0651170:CDS | 45.0% |
| !! | GGTAAGGTTGGTGCAATCAT+TGG | - | chr4_3:58530239-58530258 | Msa0651170:CDS | 45.0% |
| GGTGCAATCATTGGATCTGT+TGG | - | chr4_3:58530248-58530267 | Msa0651170:CDS | 45.0% | |
| ! | GAAGGAGCATGGATATCCTA+AGG | - | chr4_3:58530295-58530314 | Msa0651170:CDS | 45.0% |
| ! | AGGAGCATGGATATCCTAAG+GGG | - | chr4_3:58530297-58530316 | Msa0651170:CDS | 45.0% |
| CATGGATATCCTAAGGGGAT+TGG | - | chr4_3:58530302-58530321 | Msa0651170:CDS | 45.0% | |
| GCTTTCATTCCAATCCCCTT+AGG | + | chr4_3:58530314-58530333 | None:intergenic | 45.0% | |
| GCCTCACTTATCATACTTGG+AGG | - | chr4_3:58530332-58530351 | Msa0651170:CDS | 45.0% | |
| CCCTCCAAGTATGATAAGTG+AGG | + | chr4_3:58530336-58530355 | None:intergenic | 45.0% | |
| TCACCAAGGAAACTATGGGA+AGG | - | chr4_3:58530390-58530409 | Msa0651170:CDS | 45.0% | |
| AGACCTTCCCATAGTTTCCT+TGG | + | chr4_3:58530396-58530415 | None:intergenic | 45.0% | |
| GGAAACTATGGGAAGGTCTT+TGG | - | chr4_3:58530397-58530416 | Msa0651170:CDS | 45.0% | |
| GGTTCTATCAGCCCTTGACT+CGG | - | chr4_3:58527028-58527047 | Msa0651170:three_prime_UTR | 50.0% | |
| GGCCATCATCATAGCAGGAA+TGG | - | chr4_3:58527076-58527095 | Msa0651170:three_prime_UTR | 50.0% | |
| ATAAGGCGATACCGTAGACG+TGG | + | chr4_3:58527298-58527317 | None:intergenic | 50.0% | |
| ! | TGATGATGCCAGAAACTGCC+AGG | - | chr4_3:58527690-58527709 | Msa0651170:CDS | 50.0% |
| TAGGCAGCATTTGTGGTTGG+TGG | + | chr4_3:58529720-58529739 | None:intergenic | 50.0% | |
| AAGAGGGTAGGCAGCATTTG+TGG | + | chr4_3:58529727-58529746 | None:intergenic | 50.0% | |
| GCTGTTTGCTCTACCATTCC+CGG | - | chr4_3:58529939-58529958 | Msa0651170:CDS | 50.0% | |
| TAGACGGTGAAGAAGTAGCC+GGG | + | chr4_3:58529960-58529979 | None:intergenic | 50.0% | |
| GTAGACGGTGAAGAAGTAGC+CGG | + | chr4_3:58529961-58529980 | None:intergenic | 50.0% | |
| GTCTACTTCATCGATCGCGT+AGG | - | chr4_3:58529975-58529994 | Msa0651170:CDS | 50.0% | |
| CTAGCTGGAAAGAGTTCAGC+TGG | + | chr4_3:58530182-58530201 | None:intergenic | 50.0% | |
| CAGCTGAACTCTTTCCAGCT+AGG | - | chr4_3:58530180-58530199 | Msa0651170:CDS | 50.0% | |
| CATGTTGACCTGAACCTAGC+TGG | + | chr4_3:58530197-58530216 | None:intergenic | 50.0% | |
| !! | CATGGTATTTCTGGGGCTGT+TGG | - | chr4_3:58530218-58530237 | Msa0651170:CDS | 50.0% |
| !! | CAACGACCGGGTTGACTTGA+CGG | + | chr4_3:58527190-58527209 | None:intergenic | 55.0% |
| GAATAGGAGTTGGCCGAAGG+CGG | + | chr4_3:58527246-58527265 | None:intergenic | 55.0% | |
| GCCTTCGGCCAACTCCTATT+CGG | - | chr4_3:58527245-58527264 | Msa0651170:CDS | 55.0% | |
| TCCGAATAGGAGTTGGCCGA+AGG | + | chr4_3:58527249-58527268 | None:intergenic | 55.0% | |
| CAACTCCTATTCGGACGCCT+CGG | - | chr4_3:58527254-58527273 | Msa0651170:CDS | 55.0% | |
| ATTTCGCAGCGGTTCGAAGC+CGG | - | chr4_3:58527571-58527590 | Msa0651170:CDS | 55.0% | |
| GAGAGGGGCAAGAAACTACC+TGG | + | chr4_3:58527711-58527730 | None:intergenic | 55.0% | |
| GGGTAGGCAGCATTTGTGGT+TGG | + | chr4_3:58529723-58529742 | None:intergenic | 55.0% | |
| GGTGAAGAAGTAGCCGGGAA+TGG | + | chr4_3:58529955-58529974 | None:intergenic | 55.0% | |
| ! | TCTGGGGCTGTTGGTAAGGT+TGG | - | chr4_3:58530227-58530246 | Msa0651170:CDS | 55.0% |
| ! | ACTTGGAGGGGTGTGCATAG+TGG | - | chr4_3:58530346-58530365 | Msa0651170:CDS | 55.0% |
| ! | CTTGGAGGGGTGTGCATAGT+GGG | - | chr4_3:58530347-58530366 | Msa0651170:CDS | 55.0% |
| ACGAGGGCTGAGACAACGAC+CGG | + | chr4_3:58527203-58527222 | None:intergenic | 60.0% | |
| ! | TAGGAGTGCGACGGAGACGA+GGG | + | chr4_3:58527219-58527238 | None:intergenic | 60.0% |
| GCACTCCTAGGAACCGCCTT+CGG | - | chr4_3:58527230-58527249 | Msa0651170:CDS | 60.0% | |
| ! | CGAGGCGTCCGAATAGGAGT+TGG | + | chr4_3:58527256-58527275 | None:intergenic | 60.0% |
| GGACGCCTCGGAGACCTAAA+AGG | - | chr4_3:58527266-58527285 | Msa0651170:CDS | 60.0% | |
| GCCTCGGAGACCTAAAAGGC+CGG | - | chr4_3:58527270-58527289 | Msa0651170:CDS | 60.0% | |
| GGCACATCAAAAGCCGTCGC+CGG | + | chr4_3:58527593-58527612 | None:intergenic | 60.0% | |
| ! | GACGGCTTTTGATGTGCCGC+CGG | - | chr4_3:58527595-58527614 | Msa0651170:CDS | 60.0% |
| CTCCATGCAACGTCAGCCTC+CGG | + | chr4_3:58527617-58527636 | None:intergenic | 60.0% | |
| CGAGGGCTGAGACAACGACC+GGG | + | chr4_3:58527202-58527221 | None:intergenic | 65.0% | |
| ! | CTAGGAGTGCGACGGAGACG+AGG | + | chr4_3:58527220-58527239 | None:intergenic | 65.0% |
| CTCGTCTCCGTCGCACTCCT+AGG | - | chr4_3:58527218-58527237 | Msa0651170:CDS | 65.0% | |
| ! | GGCGGTTCCTAGGAGTGCGA+CGG | + | chr4_3:58527228-58527247 | None:intergenic | 65.0% |
| GTTGGCCGAAGGCGGTTCCT+AGG | + | chr4_3:58527238-58527257 | None:intergenic | 65.0% | |
| ! | GGTCTCCGAGGCGTCCGAAT+AGG | + | chr4_3:58527262-58527281 | None:intergenic | 65.0% |
| !! | GCCGGCCTTTTAGGTCTCCG+AGG | + | chr4_3:58527274-58527293 | None:intergenic | 65.0% |
| !!! | AGACGTGGCGCCGGCCTTTT+AGG | + | chr4_3:58527283-58527302 | None:intergenic | 65.0% |
| AAAGGCCGGCGCCACGTCTA+CGG | - | chr4_3:58527284-58527303 | Msa0651170:CDS | 65.0% | |
| CGATACCGTAGACGTGGCGC+CGG | + | chr4_3:58527292-58527311 | None:intergenic | 65.0% | |
| ! | GGCTTTTGATGTGCCGCCGG+AGG | - | chr4_3:58527598-58527617 | Msa0651170:CDS | 65.0% |
| CATGCAACGTCAGCCTCCGG+CGG | + | chr4_3:58527614-58527633 | None:intergenic | 65.0% | |
| CGGAGGCTGACGTTGCATGG+AGG | - | chr4_3:58527615-58527634 | Msa0651170:CDS | 65.0% | |
| CAGCGGTTCGAAGCCGGCGA+CGG | - | chr4_3:58527577-58527596 | Msa0651170:CDS | 70.0% | |
| CGCCGGAGGCTGACGTTGCA+TGG | - | chr4_3:58527612-58527631 | Msa0651170:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 58527011 | 58530601 | 58527011 | ID=Msa0651170;Name=Msa0651170 |
| chr4_3 | mRNA | 58527011 | 58530601 | 58527011 | ID=Msa0651170-mRNA-1;Parent=Msa0651170;Name=Msa0651170-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0.5|1|1|1|2|129|518 |
| chr4_3 | exon | 58527011 | 58527995 | 58527011 | ID=Msa0651170-mRNA-1:exon:15509;Parent=Msa0651170-mRNA-1 |
| chr4_3 | exon | 58529901 | 58530601 | 58529901 | ID=Msa0651170-mRNA-1:exon:15508;Parent=Msa0651170-mRNA-1 |
| chr4_3 | CDS | 58529901 | 58530601 | 58529901 | ID=Msa0651170-mRNA-1:cds;Parent=Msa0651170-mRNA-1 |
| chr4_3 | CDS | 58527140 | 58527995 | 58527140 | ID=Msa0651170-mRNA-1:cds;Parent=Msa0651170-mRNA-1 |
| chr4_3 | three_prime_UTR | 58527011 | 58527139 | 58527011 | ID=Msa0651170-mRNA-1:three_prime_utr;Parent=Msa0651170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
