Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578960 | XP_003607875.1 | 99.035 | 518 | 5 | 0 | 1 | 518 | 1 | 518 | 0.0 | 1061 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578960 | sp|Q9S735|PHT19_ARATH | 64.078 | 515 | 168 | 7 | 5 | 507 | 4 | 513 | 0.0 | 676 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578960 | A2Q296 | 99.035 | 518 | 5 | 0 | 1 | 518 | 1 | 518 | 0.0 | 1061 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0185100 | Msa0578960 | 0.812727 | 3.664750e-51 | -8.615850e-47 |
| Msa0193190 | Msa0578960 | 0.810765 | 9.794537e-51 | -8.615850e-47 |
| Msa0247470 | Msa0578960 | 0.812561 | 3.984200e-51 | -8.615850e-47 |
| Msa0273070 | Msa0578960 | 0.815710 | 8.040119e-52 | -8.615850e-47 |
| Msa0324840 | Msa0578960 | 0.819696 | 1.014149e-52 | -8.615850e-47 |
| Msa0490110 | Msa0578960 | 0.847996 | 8.120670e-60 | -8.615850e-47 |
| Msa0578960 | Msa0608980 | 0.818869 | 1.564881e-52 | -8.615850e-47 |
| Msa0578960 | Msa0610580 | 0.996130 | 9.364565e-224 | -8.615850e-47 |
| Msa0578960 | Msa0651170 | 0.844835 | 5.911372e-59 | -8.615850e-47 |
| Msa0578960 | Msa0662580 | 0.804063 | 2.585296e-49 | -8.615850e-47 |
| Msa0578960 | Msa0693240 | 0.996576 | 2.535847e-229 | -8.615850e-47 |
| Msa0578960 | Msa0717860 | 0.821920 | 3.123622e-53 | -8.615850e-47 |
| Msa0578960 | Msa0758520 | 0.832916 | 7.195499e-56 | -8.615850e-47 |
| Msa0578960 | Msa0758570 | 0.829296 | 5.572302e-55 | -8.615850e-47 |
| Msa0578960 | Msa0838870 | 0.820075 | 8.307736e-53 | -8.615850e-47 |
| Msa0578960 | Msa1027910 | 0.839302 | 1.719032e-57 | -8.615850e-47 |
| Msa0578960 | Msa1084890 | 0.853830 | 1.843822e-61 | -8.615850e-47 |
| Msa0578960 | Msa1405500 | 0.804122 | 2.513970e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578960 | MtrunA17_Chr4g0043571 | 99.035 | 518 | 5 | 0 | 1 | 518 | 1 | 518 | 0.0 | 1061 |
| Msa0578960 | MtrunA17_Chr1g0186821 | 54.887 | 532 | 216 | 10 | 1 | 513 | 1 | 527 | 0.0 | 545 |
| Msa0578960 | MtrunA17_Chr1g0167741 | 54.034 | 533 | 221 | 10 | 1 | 514 | 1 | 528 | 0.0 | 537 |
| Msa0578960 | MtrunA17_Chr1g0167731 | 54.253 | 529 | 222 | 9 | 1 | 514 | 1 | 524 | 0.0 | 537 |
| Msa0578960 | MtrunA17_Chr1g0167761 | 54.221 | 533 | 220 | 10 | 1 | 514 | 1 | 528 | 0.0 | 537 |
| Msa0578960 | MtrunA17_Chr3g0120761 | 55.233 | 516 | 211 | 10 | 1 | 501 | 1 | 511 | 0.0 | 535 |
| Msa0578960 | MtrunA17_Chr1g0183921 | 52.571 | 525 | 217 | 10 | 3 | 508 | 4 | 515 | 0.0 | 528 |
| Msa0578960 | MtrunA17_Chr7g0261231 | 52.345 | 533 | 222 | 11 | 5 | 518 | 6 | 525 | 0.0 | 519 |
| Msa0578960 | MtrunA17_Chr7g0261241 | 51.769 | 537 | 213 | 12 | 5 | 510 | 6 | 527 | 1.06e-177 | 510 |
| Msa0578960 | MtrunA17_Chr1g0186831 | 52.745 | 510 | 213 | 10 | 5 | 501 | 6 | 500 | 9.23e-177 | 507 |
| Msa0578960 | MtrunA17_Chr1g0183911 | 50.662 | 529 | 225 | 12 | 1 | 507 | 1 | 515 | 4.05e-172 | 496 |
| Msa0578960 | MtrunA17_Chr1g0158991 | 49.615 | 520 | 238 | 11 | 4 | 513 | 2 | 507 | 1.51e-163 | 474 |
| Msa0578960 | MtrunA17_Chr5g0428481 | 47.905 | 549 | 236 | 13 | 1 | 514 | 1 | 534 | 3.41e-157 | 459 |
| Msa0578960 | MtrunA17_Chr6g0485661 | 24.951 | 513 | 306 | 17 | 12 | 500 | 45 | 502 | 4.77e-20 | 93.2 |
| Msa0578960 | MtrunA17_Chr7g0214451 | 22.088 | 498 | 310 | 17 | 26 | 505 | 39 | 476 | 5.05e-14 | 74.3 |
| Msa0578960 | MtrunA17_Chr3g0121674 | 24.590 | 305 | 194 | 8 | 211 | 503 | 1 | 281 | 1.66e-13 | 71.6 |
| Msa0578960 | MtrunA17_Chr4g0036021 | 21.503 | 479 | 288 | 15 | 61 | 505 | 60 | 484 | 2.60e-12 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578960 | AT1G76430.1 | 64.078 | 515 | 168 | 7 | 5 | 507 | 4 | 513 | 0.0 | 676 |
| Msa0578960 | AT1G20860.2 | 63.410 | 522 | 175 | 7 | 5 | 517 | 55 | 569 | 0.0 | 666 |
| Msa0578960 | AT1G20860.1 | 63.410 | 522 | 175 | 7 | 5 | 517 | 3 | 517 | 0.0 | 665 |
| Msa0578960 | AT5G43350.1 | 54.302 | 523 | 215 | 11 | 5 | 510 | 6 | 521 | 0.0 | 540 |
| Msa0578960 | AT5G43360.1 | 54.247 | 518 | 215 | 11 | 5 | 507 | 6 | 516 | 0.0 | 535 |
| Msa0578960 | AT2G38940.1 | 54.038 | 520 | 215 | 13 | 1 | 503 | 1 | 513 | 0.0 | 525 |
| Msa0578960 | AT3G54700.2 | 53.640 | 522 | 221 | 11 | 5 | 513 | 6 | 519 | 0.0 | 524 |
| Msa0578960 | AT3G54700.1 | 53.640 | 522 | 221 | 11 | 5 | 513 | 6 | 519 | 0.0 | 524 |
| Msa0578960 | AT5G43370.1 | 54.183 | 526 | 217 | 11 | 5 | 513 | 6 | 524 | 2.06e-179 | 514 |
| Msa0578960 | AT5G43370.2 | 54.183 | 526 | 217 | 11 | 5 | 513 | 6 | 524 | 2.06e-179 | 514 |
| Msa0578960 | AT2G32830.1 | 52.190 | 525 | 225 | 11 | 3 | 508 | 4 | 521 | 2.69e-178 | 513 |
| Msa0578960 | AT5G43340.1 | 51.758 | 512 | 222 | 10 | 6 | 507 | 8 | 504 | 3.26e-171 | 493 |
| Msa0578960 | AT4G08878.1 | 54.701 | 234 | 90 | 5 | 30 | 252 | 13 | 241 | 2.70e-72 | 231 |
| Msa0578960 | AT4G08895.1 | 42.647 | 136 | 43 | 3 | 318 | 453 | 30 | 130 | 5.46e-27 | 107 |
| Msa0578960 | AT2G43330.1 | 22.335 | 394 | 252 | 11 | 132 | 512 | 131 | 483 | 1.17e-14 | 77.0 |
| Msa0578960 | AT3G18830.1 | 23.774 | 530 | 302 | 21 | 15 | 506 | 31 | 496 | 6.57e-12 | 68.6 |
Find 140 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTTCTTCTTTGCAAATTT+TGG | 0.012899 | 4_1:-83642595 | Msa0578960:CDS |
| TCAACATGTCATGGTATTTC+TGG | 0.184785 | 4_1:-83642517 | Msa0578960:CDS |
| ATGGATTCTCTTCGGTTATT+TGG | 0.195842 | 4_1:+83643034 | None:intergenic |
| AGAAACTACCTGGCAGTTTC+TGG | 0.216451 | 4_1:+83644919 | None:intergenic |
| GGTTTCTTTAGATTCTTCTT+AGG | 0.224645 | 4_1:-83645222 | Msa0578960:CDS |
| TGTCTGAGTTTGCTAATAAA+AGG | 0.237042 | 4_1:-83645158 | Msa0578960:CDS |
| TTTGGTCCAATGAGAGTAAT+AGG | 0.245047 | 4_1:+83642663 | None:intergenic |
| TATGCAAGGGTTTGGTATAT+TGG | 0.253824 | 4_1:-83645103 | Msa0578960:CDS |
| TTGGATCTGTAGGATTTCTT+TGG | 0.269360 | 4_1:-83642468 | Msa0578960:CDS |
| CTCATAACTTTATTCAAAAC+TGG | 0.274561 | 4_1:+83642146 | None:intergenic |
| CAGCTGCATTGACTTATTAT+TGG | 0.282392 | 4_1:-83644954 | Msa0578960:CDS |
| GGTTGACTTGACGGATTTCT+TGG | 0.294025 | 4_1:+83645439 | None:intergenic |
| GCTGTTTGCTCTACCATTCC+CGG | 0.304136 | 4_1:-83642787 | Msa0578960:CDS |
| TTTAGATTCTTCTTAGGGCT+TGG | 0.319569 | 4_1:-83645216 | Msa0578960:CDS |
| TGGATCTGTAGGATTTCTTT+GGG | 0.330065 | 4_1:-83642467 | Msa0578960:CDS |
| GGCTAGTGCAACTGTTACTA+TGG | 0.333298 | 4_1:-83645082 | Msa0578960:CDS |
| GGAAACCATGGGAAGATCTT+TGG | 0.341697 | 4_1:-83642329 | Msa0578960:CDS |
| GCATTTGTGGTTGGTGGTAA+TGG | 0.351217 | 4_1:+83643015 | None:intergenic |
| AACTCTTTCCAGCTAGGTTC+AGG | 0.354273 | 4_1:-83642540 | Msa0578960:CDS |
| GTTTCTTTAGATTCTTCTTA+GGG | 0.354585 | 4_1:-83645221 | Msa0578960:CDS |
| GCTTGTTAGCATCAATAATA+AGG | 0.362995 | 4_1:+83645305 | None:intergenic |
| AGCTCTCTTTGTTGTACATA+TGG | 0.368396 | 4_1:+83645263 | None:intergenic |
| TCTGGGGCTGTTGGTAAGGT+TGG | 0.368628 | 4_1:-83642499 | Msa0578960:CDS |
| GGACGCCTCGGAGACCTAAA+AGG | 0.373921 | 4_1:-83645351 | Msa0578960:CDS |
| GGTTTCCCTATTACTCTCAT+TGG | 0.377430 | 4_1:-83642669 | Msa0578960:CDS |
| GACATAATGGTAGAAGATAA+AGG | 0.378353 | 4_1:+83645177 | None:intergenic |
| TTCTTCTTAGGGCTTGGAAT+TGG | 0.379282 | 4_1:-83645210 | Msa0578960:CDS |
| TTCTTAGGGCTTGGAATTGG+TGG | 0.382861 | 4_1:-83645207 | Msa0578960:CDS |
| ATTAGCAAACTCAGACATAA+TGG | 0.389302 | 4_1:+83645164 | None:intergenic |
| GGTCTCCGAGGCGTCCGAAT+AGG | 0.396679 | 4_1:+83645358 | None:intergenic |
| ACAATAAAGGTGGTAGTGTT+AGG | 0.397982 | 4_1:+83642571 | None:intergenic |
| TCATGATAACAAAGGGTTCA+TGG | 0.404520 | 4_1:-83642632 | Msa0578960:CDS |
| CTAACAAGCTCTCTAGCTTC+TGG | 0.406505 | 4_1:-83645291 | Msa0578960:CDS |
| CAACATGTCATGGTATTTCT+GGG | 0.410467 | 4_1:-83642516 | Msa0578960:CDS |
| AGATCTTCCCATGGTTTCCT+TGG | 0.413802 | 4_1:+83642333 | None:intergenic |
| CCACGACTGGGTTGACTTGA+CGG | 0.422761 | 4_1:+83645430 | None:intergenic |
| AAAGGGTTCATGGTTATCTA+TGG | 0.427006 | 4_1:-83642622 | Msa0578960:CDS |
| TGTTACTATGGTGGTTTGCT+TGG | 0.428921 | 4_1:-83645070 | Msa0578960:CDS |
| GGTAAGGTTGGTGCAATCAT+TGG | 0.429582 | 4_1:-83642487 | Msa0578960:CDS |
| TATTTCTGGGGCTGTTGGTA+AGG | 0.444891 | 4_1:-83642503 | Msa0578960:CDS |
| GCCTTCGGCCAACTCCTATT+CGG | 0.447789 | 4_1:-83645372 | Msa0578960:CDS |
| AAGAGTTAAAATCCAAATGA+TGG | 0.452565 | 4_1:-83642728 | Msa0578960:CDS |
| CTTGTCTCCGTCGCACTCCT+AGG | 0.457221 | 4_1:-83645399 | Msa0578960:CDS |
| GTTGGCCGAAGGCGGTTCCT+AGG | 0.459158 | 4_1:+83645382 | None:intergenic |
| CGCCGGAGGCTGACGTTGCA+TGG | 0.463769 | 4_1:-83645005 | Msa0578960:CDS |
| AACACAATACTACCATTTCA+AGG | 0.465634 | 4_1:-83645562 | Msa0578960:CDS |
| TGGTGGTAATGGATTCTCTT+CGG | 0.465888 | 4_1:+83643026 | None:intergenic |
| CAGCTGAACTCTTTCCAGCT+AGG | 0.466833 | 4_1:-83642546 | Msa0578960:CDS |
| GCTTTCATTCCAATCCCCTT+AGG | 0.467608 | 4_1:+83642415 | None:intergenic |
| CTCCATGCAACGTCAGCCTC+CGG | 0.468310 | 4_1:+83645003 | None:intergenic |
| GAGTTCAGCTGGGACAATAA+AGG | 0.470332 | 4_1:+83642558 | None:intergenic |
| ATCGTTTGTATATTTCACTT+TGG | 0.472004 | 4_1:+83642881 | None:intergenic |
| CTTGGAGGGGTGTGCATAGT+GGG | 0.472095 | 4_1:-83642379 | Msa0578960:CDS |
| AAGAATTCTCTTGAAAGAAG+AGG | 0.472184 | 4_1:+83642985 | None:intergenic |
| GAAAATGGCAAGAGGATTGA+AGG | 0.478791 | 4_1:-83645610 | None:intergenic |
| CATGTTGACCTGAACCTAGC+TGG | 0.479877 | 4_1:+83642532 | None:intergenic |
| CTAGCTGGAAAGAGTTCAGC+TGG | 0.480788 | 4_1:+83642547 | None:intergenic |
| AAAGCCTCACTTATCATACT+TGG | 0.482489 | 4_1:-83642397 | Msa0578960:CDS |
| GGTAGAGCAAACAGCAAGAA+TGG | 0.483548 | 4_1:+83642795 | None:intergenic |
| CTATGATGATGGCCTTGAAA+TGG | 0.485108 | 4_1:+83645550 | None:intergenic |
| TTTCACTTTGGAATAGAACT+TGG | 0.486743 | 4_1:+83642893 | None:intergenic |
| AAGAGGGTAGGCAGCATTTG+TGG | 0.490158 | 4_1:+83643002 | None:intergenic |
| CATTAGGTATACAGCATTAG+TGG | 0.491216 | 4_1:-83643115 | Msa0578960:intron |
| TGGAGGTTGATATTGATGAT+TGG | 0.491970 | 4_1:-83644985 | Msa0578960:CDS |
| GAAGGAGGAAGGATATCCTA+AGG | 0.492281 | 4_1:-83642431 | Msa0578960:CDS |
| GAGAAAATCATGATAACAAA+GGG | 0.493974 | 4_1:-83642639 | Msa0578960:CDS |
| ACAAGGGCTGAGACCACGAC+TGG | 0.495093 | 4_1:+83645417 | None:intergenic |
| TTGCAAGATGGAAAGCCTCT+TGG | 0.498386 | 4_1:+83642827 | None:intergenic |
| GGCACATCAAAAGCCGTCTC+CGG | 0.505349 | 4_1:+83645027 | None:intergenic |
| ATTTCGCAGCGGTTCGAAGC+CGG | 0.506942 | 4_1:-83645046 | Msa0578960:CDS |
| GCCTCACTTATCATACTTGG+AGG | 0.509162 | 4_1:-83642394 | Msa0578960:CDS |
| TTGACGGATTTCTTGGTGGT+CGG | 0.509656 | 4_1:+83645446 | None:intergenic |
| CAGCGGTTCGAAGCCGGAGA+CGG | 0.512536 | 4_1:-83645040 | Msa0578960:CDS |
| TGGCTTGGATTCTTGCAAGA+TGG | 0.513731 | 4_1:+83642815 | None:intergenic |
| TTGGTCCAATGAGAGTAATA+GGG | 0.517347 | 4_1:+83642664 | None:intergenic |
| GAAGGATATCCTAAGGGGAT+TGG | 0.519052 | 4_1:-83642424 | Msa0578960:CDS |
| GCCATCATCATAGCAGGAAT+GGG | 0.519478 | 4_1:-83645540 | Msa0578960:CDS |
| ACTTGGAGGGGTGTGCATAG+TGG | 0.520704 | 4_1:-83642380 | Msa0578960:CDS |
| TCCCATTCCTGCTATGATGA+TGG | 0.520757 | 4_1:+83645539 | None:intergenic |
| AAGATCTTTGGAAGAAAATG+AGG | 0.523433 | 4_1:-83642317 | Msa0578960:CDS |
| GGCCATCATCATAGCAGGAA+TGG | 0.527722 | 4_1:-83645541 | Msa0578960:CDS |
| AGAGTTAAAATCCAAATGAT+GGG | 0.528348 | 4_1:-83642727 | Msa0578960:CDS |
| GGTGCAATCATTGGATCTGT+AGG | 0.529168 | 4_1:-83642478 | Msa0578960:CDS |
| TTCTTTCAAGAGAATTCTTG+TGG | 0.530678 | 4_1:-83642981 | Msa0578960:CDS |
| TAGGCAGCATTTGTGGTTGG+TGG | 0.531743 | 4_1:+83643009 | None:intergenic |
| AGCAAACAGCAAGAATGGCT+TGG | 0.533200 | 4_1:+83642800 | None:intergenic |
| CATGGTATTTCTGGGGCTGT+TGG | 0.533358 | 4_1:-83642508 | Msa0578960:CDS |
| TTCAAGGCCATCATCATAGC+AGG | 0.537123 | 4_1:-83645546 | Msa0578960:CDS |
| TGACTTGACGGATTTCTTGG+TGG | 0.538931 | 4_1:+83645442 | None:intergenic |
| GCACTCCTAGGAACCGCCTT+CGG | 0.541368 | 4_1:-83645387 | Msa0578960:CDS |
| TGATGATGCCAGAAACTGCC+AGG | 0.550572 | 4_1:-83644927 | Msa0578960:intron |
| CTAGGAGTGCGACGGAGACA+AGG | 0.555040 | 4_1:+83645400 | None:intergenic |
| CAATAATAAGTCAATGCAGC+TGG | 0.561487 | 4_1:+83644955 | None:intergenic |
| TTCTTCCAAAGATCTTCCCA+TGG | 0.566058 | 4_1:+83642324 | None:intergenic |
| CGAGGCGTCCGAATAGGAGT+TGG | 0.566689 | 4_1:+83645364 | None:intergenic |
| GGGTAGGCAGCATTTGTGGT+TGG | 0.568959 | 4_1:+83643006 | None:intergenic |
| TTTGCTAATAAAAGGACAAG+AGG | 0.571218 | 4_1:-83645150 | Msa0578960:CDS |
| GGAGAAAATCATGATAACAA+AGG | 0.571581 | 4_1:-83642640 | Msa0578960:CDS |
| AGAATTCTCTTGAAAGAAGA+GGG | 0.572284 | 4_1:+83642986 | None:intergenic |
| AAAGGCCGACGCCACGTCTA+CGG | 0.572932 | 4_1:-83645333 | Msa0578960:CDS |
| CCTCACTTATCATACTTGGA+GGG | 0.573294 | 4_1:-83642393 | Msa0578960:CDS |
| CAACTCCTATTCGGACGCCT+CGG | 0.577300 | 4_1:-83645363 | Msa0578960:CDS |
| AAGGAGGAAGGATATCCTAA+GGG | 0.582496 | 4_1:-83642430 | Msa0578960:CDS |
| GGTGAAGAAGTAGCCGGGAA+TGG | 0.582583 | 4_1:+83642774 | None:intergenic |
| CAAAATCAGAAAATGGCAAG+AGG | 0.585475 | 4_1:-83645618 | None:intergenic |
| TCCGAATAGGAGTTGGCCGA+AGG | 0.586471 | 4_1:+83645371 | None:intergenic |
| TAGACGGTGAAGAAGTAGCC+GGG | 0.588557 | 4_1:+83642769 | None:intergenic |
| AGAGAATTCTTGTGGCGACA+TGG | 0.588933 | 4_1:-83642973 | Msa0578960:CDS |
| TATTACTCTCATTGGACCAA+AGG | 0.589189 | 4_1:-83642661 | Msa0578960:CDS |
| ACACTCATCACAAAGATGCT+AGG | 0.592024 | 4_1:-83645483 | Msa0578960:CDS |
| TAGTGCAACTGTTACTATGG+TGG | 0.593095 | 4_1:-83645079 | Msa0578960:CDS |
| TTGGGCATCACATAAAGAGA+AGG | 0.594444 | 4_1:-83642449 | Msa0578960:CDS |
| GTAGACGGTGAAGAAGTAGC+CGG | 0.596248 | 4_1:+83642768 | None:intergenic |
| CTCACTTATCATACTTGGAG+GGG | 0.600686 | 4_1:-83642392 | Msa0578960:CDS |
| TTCTCTTGAAAGAAGAGGGT+AGG | 0.600721 | 4_1:+83642990 | None:intergenic |
| TCACATAAAGAGAAGGAGGA+AGG | 0.604798 | 4_1:-83642442 | Msa0578960:CDS |
| AGGTTCAGGTCAACATGTCA+TGG | 0.614954 | 4_1:-83642526 | Msa0578960:CDS |
| CATGCAACGTCAGCCTCCGG+CGG | 0.616211 | 4_1:+83645006 | None:intergenic |
| AAGAGGTTCTTTCATAGCTG+CGG | 0.616245 | 4_1:-83645133 | Msa0578960:CDS |
| TGATGAGTGTGATGGAGAAG+AGG | 0.617684 | 4_1:+83645496 | None:intergenic |
| CATCTTTGTGATGAGTGTGA+TGG | 0.618124 | 4_1:+83645488 | None:intergenic |
| AACATGTCATGGTATTTCTG+GGG | 0.624270 | 4_1:-83642515 | Msa0578960:CDS |
| GAATAGGAGTTGGCCGAAGG+CGG | 0.628666 | 4_1:+83645374 | None:intergenic |
| GGCATCACATAAAGAGAAGG+AGG | 0.629025 | 4_1:-83642446 | Msa0578960:CDS |
| GGCGGTTCCTAGGAGTGCGA+CGG | 0.633327 | 4_1:+83645392 | None:intergenic |
| TAGGAGTGCGACGGAGACAA+GGG | 0.636930 | 4_1:+83645401 | None:intergenic |
| CGATACCGTAGACGTGGCGT+CGG | 0.639282 | 4_1:+83645328 | None:intergenic |
| CAAGGGCTGAGACCACGACT+GGG | 0.639760 | 4_1:+83645418 | None:intergenic |
| AGGAGGAAGGATATCCTAAG+GGG | 0.642903 | 4_1:-83642429 | Msa0578960:CDS |
| TGAAGAAGATGTGTACCAAG+AGG | 0.649402 | 4_1:-83642842 | Msa0578960:CDS |
| CCGTCAAGTCAACCCAGTCG+TGG | 0.651286 | 4_1:-83645430 | Msa0578960:CDS |
| GTTGCAAGCTGCAAAAGACA+TGG | 0.660760 | 4_1:-83643082 | Msa0578960:CDS |
| TTCAGCTGGGACAATAAAGG+TGG | 0.666270 | 4_1:+83642561 | None:intergenic |
| TAGCTGGAAAGAGTTCAGCT+GGG | 0.667181 | 4_1:+83642548 | None:intergenic |
| CCCTCCAAGTATGATAAGTG+AGG | 0.670122 | 4_1:+83642393 | None:intergenic |
| TACGCGATCGATGAAGTAGA+CGG | 0.672938 | 4_1:+83642753 | None:intergenic |
| GTTTGCTTGGTATTTCGCAG+CGG | 0.690623 | 4_1:-83645057 | Msa0578960:CDS |
| CGGAGGCTGACGTTGCATGG+AGG | 0.694489 | 4_1:-83645002 | Msa0578960:CDS |
| ATAAGGCGATACCGTAGACG+TGG | 0.708896 | 4_1:+83645322 | None:intergenic |
| GTCTACTTCATCGATCGCGT+AGG | 0.713972 | 4_1:-83642751 | Msa0578960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATTAAATATAAAAAA+TGG | - | chr4_1:83643059-83643078 | Msa0578960:CDS | 0.0% |
| !!! | TAAAATTTTAAAATTTTATA+AGG | + | chr4_1:83643386-83643405 | None:intergenic | 0.0% |
| !! | TTAAAATCAAATGAAAATAA+TGG | - | chr4_1:83643726-83643745 | Msa0578960:intron | 10.0% |
| !! | ATAAAATTAAAATTCAACTA+GGG | + | chr4_1:83643816-83643835 | None:intergenic | 10.0% |
| !! | TATAAAATTAAAATTCAACT+AGG | + | chr4_1:83643817-83643836 | None:intergenic | 10.0% |
| !!! | TATAAATTTCAAAAGTACAA+TGG | + | chr4_1:83643031-83643050 | None:intergenic | 15.0% |
| !! | GTGTATGTATAAAAAAAATT+AGG | - | chr4_1:83643104-83643123 | Msa0578960:CDS | 15.0% |
| !!! | AAATGCATTATTTAAAACAA+GGG | + | chr4_1:83643597-83643616 | None:intergenic | 15.0% |
| !!! | AAAATGCATTATTTAAAACA+AGG | + | chr4_1:83643598-83643617 | None:intergenic | 15.0% |
| !! | CTAAAACATTGTTAATTAAA+TGG | + | chr4_1:83643887-83643906 | None:intergenic | 15.0% |
| !! | AATAATTAGTATAGAAAATG+CGG | - | chr4_1:83644078-83644097 | Msa0578960:intron | 15.0% |
| !!! | ATTAATTTAATTTAAAGGTG+TGG | - | chr4_1:83644104-83644123 | Msa0578960:intron | 15.0% |
| !! | AGTAAATAAATGAACAACAA+TGG | + | chr4_1:83642990-83643009 | None:intergenic | 20.0% |
| !!! | TGTTCATTTATTTACTTTTG+TGG | - | chr4_1:83642994-83643013 | Msa0578960:CDS | 20.0% |
| !!! | AAAATTCTTCAACTTTTAGT+CGG | - | chr4_1:83643423-83643442 | Msa0578960:intron | 20.0% |
| !! | ATGGTATTAATTAAATGTAC+TGG | - | chr4_1:83643745-83643764 | Msa0578960:intron | 20.0% |
| !!! | GCATTTTCTATACTAATTAT+TGG | + | chr4_1:83644079-83644098 | None:intergenic | 20.0% |
| !!! | GGCTGATTAATTTAATTTAA+AGG | - | chr4_1:83644099-83644118 | Msa0578960:intron | 20.0% |
| !! | AATAACATTATCTTGTTACT+AGG | - | chr4_1:83644175-83644194 | Msa0578960:intron | 20.0% |
| !! | ATAACATTATCTTGTTACTA+GGG | - | chr4_1:83644176-83644195 | Msa0578960:intron | 20.0% |
| !! | TTTAAGGGAAAAAAATATTG+GGG | + | chr4_1:83644215-83644234 | None:intergenic | 20.0% |
| !! | GTTTAAGGGAAAAAAATATT+GGG | + | chr4_1:83644216-83644235 | None:intergenic | 20.0% |
| !! | TGTTTAAGGGAAAAAAATAT+TGG | + | chr4_1:83644217-83644236 | None:intergenic | 20.0% |
| !!! | TTCAGTTGATCATTTATTTT+TGG | - | chr4_1:83644426-83644445 | Msa0578960:intron | 20.0% |
| !!! | TCAAAACCTTATCTAAAATT+TGG | - | chr4_1:83644496-83644515 | Msa0578960:intron | 20.0% |
| !!! | AATTGAAGTACTATTATGTT+CGG | + | chr4_1:83644532-83644551 | None:intergenic | 20.0% |
| ! | GTTTCTTTAGATTCTTCTTA+GGG | - | chr4_1:83642527-83642546 | Msa0578960:CDS | 25.0% |
| ! | ATAAATATGTGAAGTAGAGA+GGG | + | chr4_1:83642858-83642877 | None:intergenic | 25.0% |
| ! | TATAAATATGTGAAGTAGAG+AGG | + | chr4_1:83642859-83642878 | None:intergenic | 25.0% |
| ! | GAATAAAAAAAGTGAACACT+AGG | + | chr4_1:83643133-83643152 | None:intergenic | 25.0% |
| ! | AAAATATACTGATGTCTTCA+TGG | + | chr4_1:83643485-83643504 | None:intergenic | 25.0% |
| ! | AAATAAGAAAGTCATAGGTA+CGG | + | chr4_1:83643674-83643693 | None:intergenic | 25.0% |
| !! | TACCTATGACTTTCTTATTT+GGG | - | chr4_1:83643674-83643693 | Msa0578960:intron | 25.0% |
| ! | AAATGGTTAAACTTACTTGA+AGG | + | chr4_1:83643870-83643889 | None:intergenic | 25.0% |
| !!! | AACAATGTTTTAGTCAAAGA+AGG | - | chr4_1:83643894-83643913 | Msa0578960:intron | 25.0% |
| ! | AAAGAAGGAATAGAATAGAA+AGG | - | chr4_1:83643909-83643928 | Msa0578960:intron | 25.0% |
| ! | TTATATATTGAGTGATCGAT+TGG | - | chr4_1:83644000-83644019 | Msa0578960:intron | 25.0% |
| ! | AATTATTGGCATTCTCTTAT+TGG | + | chr4_1:83644065-83644084 | None:intergenic | 25.0% |
| !!! | TTTTTTTCCCTTAAACAAAG+TGG | - | chr4_1:83644220-83644239 | Msa0578960:intron | 25.0% |
| !! | GTATTTACCACTTTGTTTAA+GGG | + | chr4_1:83644230-83644249 | None:intergenic | 25.0% |
| !!! | ATGTATGTGTGAGTTTTAAA+CGG | + | chr4_1:83644252-83644271 | None:intergenic | 25.0% |
| ! | CCTTAATACAAGTTTGAATT+CGG | + | chr4_1:83644285-83644304 | None:intergenic | 25.0% |
| ! | CACTTATTATCGAAATGAAT+TGG | + | chr4_1:83644367-83644386 | None:intergenic | 25.0% |
| ! | TAAATTAACATCGACAAAGT+TGG | + | chr4_1:83644396-83644415 | None:intergenic | 25.0% |
| !!! | AGTTGATCATTTATTTTTGG+TGG | - | chr4_1:83644429-83644448 | Msa0578960:intron | 25.0% |
| !! | CATTGCATTTTTAATGTTCA+TGG | - | chr4_1:83644573-83644592 | Msa0578960:intron | 25.0% |
| ! | AACAATTGAATAACGTACTA+TGG | - | chr4_1:83644604-83644623 | Msa0578960:intron | 25.0% |
| ! | ATCGTTTGTATATTTCACTT+TGG | + | chr4_1:83644870-83644889 | None:intergenic | 25.0% |
| ! | AAGAGTTAAAATCCAAATGA+TGG | - | chr4_1:83645020-83645039 | Msa0578960:CDS | 25.0% |
| ! | AGAGTTAAAATCCAAATGAT+GGG | - | chr4_1:83645021-83645040 | Msa0578960:CDS | 25.0% |
| ! | GAGAAAATCATGATAACAAA+GGG | - | chr4_1:83645109-83645128 | Msa0578960:CDS | 25.0% |
| ! | CTCATAACTTTATTCAAAAC+TGG | + | chr4_1:83645605-83645624 | None:intergenic | 25.0% |
| AACACAATACTACCATTTCA+AGG | - | chr4_1:83642186-83642205 | Msa0578960:three_prime_UTR | 30.0% | |
| ! | GCTTGTTAGCATCAATAATA+AGG | + | chr4_1:83642446-83642465 | None:intergenic | 30.0% |
| GGTTTCTTTAGATTCTTCTT+AGG | - | chr4_1:83642526-83642545 | Msa0578960:CDS | 30.0% | |
| GACATAATGGTAGAAGATAA+AGG | + | chr4_1:83642574-83642593 | None:intergenic | 30.0% | |
| ATTAGCAAACTCAGACATAA+TGG | + | chr4_1:83642587-83642606 | None:intergenic | 30.0% | |
| !! | TGTCTGAGTTTGCTAATAAA+AGG | - | chr4_1:83642590-83642609 | Msa0578960:CDS | 30.0% |
| TTTGCTAATAAAAGGACAAG+AGG | - | chr4_1:83642598-83642617 | Msa0578960:CDS | 30.0% | |
| TAAATATGTGAAGTAGAGAG+GGG | + | chr4_1:83642857-83642876 | None:intergenic | 30.0% | |
| GAACCCAAATATCTTGTTAA+CGG | - | chr4_1:83643195-83643214 | Msa0578960:intron | 30.0% | |
| AACCCAAATATCTTGTTAAC+GGG | - | chr4_1:83643196-83643215 | Msa0578960:intron | 30.0% | |
| TACCCGTTAACAAGATATTT+GGG | + | chr4_1:83643201-83643220 | None:intergenic | 30.0% | |
| ACTGCACATTAAAAGTAGTT+AGG | - | chr4_1:83643297-83643316 | Msa0578960:intron | 30.0% | |
| !! | CGAAGTGTCTATAAAACTTT+TGG | - | chr4_1:83643452-83643471 | Msa0578960:intron | 30.0% |
| GTACCTATGACTTTCTTATT+TGG | - | chr4_1:83643673-83643692 | Msa0578960:intron | 30.0% | |
| TTATTTGGGTCCATTTGAAA+TGG | - | chr4_1:83643688-83643707 | Msa0578960:intron | 30.0% | |
| CAAGAAATGTCCATTTCAAA+TGG | + | chr4_1:83643701-83643720 | None:intergenic | 30.0% | |
| ! | CATTTGAAATGGACATTTCT+TGG | - | chr4_1:83643699-83643718 | Msa0578960:intron | 30.0% |
| ! | GGTATTTACCACTTTGTTTA+AGG | + | chr4_1:83644231-83644250 | None:intergenic | 30.0% |
| CCGAATTCAAACTTGTATTA+AGG | - | chr4_1:83644282-83644301 | Msa0578960:intron | 30.0% | |
| TCATTTCGATAATAAGTGTG+AGG | - | chr4_1:83644369-83644388 | Msa0578960:intron | 30.0% | |
| ! | GTGGAACCAAATTTTAGATA+AGG | + | chr4_1:83644505-83644524 | None:intergenic | 30.0% |
| AGAATTCTCTTGAAAGAAGA+GGG | + | chr4_1:83644765-83644784 | None:intergenic | 30.0% | |
| AAGAATTCTCTTGAAAGAAG+AGG | + | chr4_1:83644766-83644785 | None:intergenic | 30.0% | |
| TTCTTTCAAGAGAATTCTTG+TGG | - | chr4_1:83644767-83644786 | Msa0578960:intron | 30.0% | |
| !! | TTTCACTTTGGAATAGAACT+TGG | + | chr4_1:83644858-83644877 | None:intergenic | 30.0% |
| TGAAGAAAAAACCCATCATT+TGG | + | chr4_1:83645035-83645054 | None:intergenic | 30.0% | |
| !!! | AATGATGGGTTTTTTCTTCA+TGG | - | chr4_1:83645035-83645054 | Msa0578960:CDS | 30.0% |
| !!! | CAGTGTCATTTTTTGCTTTA+GGG | - | chr4_1:83645058-83645077 | Msa0578960:CDS | 30.0% |
| ! | GTTATCATGATTTTCTCCTT+TGG | + | chr4_1:83645106-83645125 | None:intergenic | 30.0% |
| GGAGAAAATCATGATAACAA+AGG | - | chr4_1:83645108-83645127 | Msa0578960:CDS | 30.0% | |
| ! | GCTTTCTTCTTTGCAAATTT+TGG | - | chr4_1:83645153-83645172 | Msa0578960:CDS | 30.0% |
| !!! | TGTTACTTACTTTTTCACCA+AGG | - | chr4_1:83645398-83645417 | Msa0578960:CDS | 30.0% |
| ! | AAGATCTTTGGAAGAAAATG+AGG | - | chr4_1:83645431-83645450 | Msa0578960:CDS | 30.0% |
| ! | AAACAAAAATGTTAGCCTAG+TGG | - | chr4_1:83645562-83645581 | Msa0578960:CDS | 30.0% |
| ! | AACAAAAATGTTAGCCTAGT+GGG | - | chr4_1:83645563-83645582 | Msa0578960:CDS | 30.0% |
| !! | TTGTGTTTTTGCTGAGTCAA+GGG | + | chr4_1:83642173-83642192 | None:intergenic | 35.0% |
| !! | ATTGTGTTTTTGCTGAGTCA+AGG | + | chr4_1:83642174-83642193 | None:intergenic | 35.0% |
| ! | AGCTCTCTTTGTTGTACATA+TGG | + | chr4_1:83642488-83642507 | None:intergenic | 35.0% |
| ! | GCTTGTGTTTTACTATCTCT+TGG | - | chr4_1:83642505-83642524 | Msa0578960:CDS | 35.0% |
| TTTAGATTCTTCTTAGGGCT+TGG | - | chr4_1:83642532-83642551 | Msa0578960:CDS | 35.0% | |
| !!! | GTTTTTTCTATGCAAGGGTT+TGG | - | chr4_1:83642637-83642656 | Msa0578960:CDS | 35.0% |
| ! | TATGCAAGGGTTTGGTATAT+TGG | - | chr4_1:83642645-83642664 | Msa0578960:CDS | 35.0% |
| !! | TGGAGGTTGATATTGATGAT+TGG | - | chr4_1:83642763-83642782 | Msa0578960:CDS | 35.0% |
| CAATAATAAGTCAATGCAGC+TGG | + | chr4_1:83642796-83642815 | None:intergenic | 35.0% | |
| !! | CAGCTGCATTGACTTATTAT+TGG | - | chr4_1:83642794-83642813 | Msa0578960:CDS | 35.0% |
| !! | CGATAGTGGAAAACAAATGT+AGG | + | chr4_1:83643176-83643195 | None:intergenic | 35.0% |
| ! | AAGATATTTGGGTTCGATAG+TGG | + | chr4_1:83643190-83643209 | None:intergenic | 35.0% |
| GTACCCGTTAACAAGATATT+TGG | + | chr4_1:83643202-83643221 | None:intergenic | 35.0% | |
| GACCCAAATAAGAAAGTCAT+AGG | + | chr4_1:83643679-83643698 | None:intergenic | 35.0% | |
| ATTAAATTCCTTGCGTCATG+TGG | - | chr4_1:83643963-83643982 | Msa0578960:intron | 35.0% | |
| ! | AATTTAAAGGTGTGGAAGTG+AGG | - | chr4_1:83644112-83644131 | Msa0578960:intron | 35.0% |
| ACATTATCTTGTTACTAGGG+AGG | - | chr4_1:83644179-83644198 | Msa0578960:intron | 35.0% | |
| TCGACATTATCAGTTGTGTT+AGG | - | chr4_1:83644322-83644341 | Msa0578960:intron | 35.0% | |
| CACGAAAAAATGCATGATGA+AGG | + | chr4_1:83644462-83644481 | None:intergenic | 35.0% | |
| TACTATTATGTTCGGCTAAG+TGG | + | chr4_1:83644524-83644543 | None:intergenic | 35.0% | |
| CATTAGGTATACAGCATTAG+TGG | - | chr4_1:83644633-83644652 | Msa0578960:intron | 35.0% | |
| ATGGATTCTCTTCGGTTATT+TGG | + | chr4_1:83644717-83644736 | None:intergenic | 35.0% | |
| ! | TTTTCGCATGTTCTGCTAAT+TGG | - | chr4_1:83644806-83644825 | Msa0578960:intron | 35.0% |
| !! | CTTCTTCATCTTTTTCGTTG+AGG | + | chr4_1:83644894-83644913 | None:intergenic | 35.0% |
| !!! | GCAGTGTCATTTTTTGCTTT+AGG | - | chr4_1:83645057-83645076 | Msa0578960:CDS | 35.0% |
| TTGGTCCAATGAGAGTAATA+GGG | + | chr4_1:83645087-83645106 | None:intergenic | 35.0% | |
| TTTGGTCCAATGAGAGTAAT+AGG | + | chr4_1:83645088-83645107 | None:intergenic | 35.0% | |
| TATTACTCTCATTGGACCAA+AGG | - | chr4_1:83645087-83645106 | Msa0578960:CDS | 35.0% | |
| TCATGATAACAAAGGGTTCA+TGG | - | chr4_1:83645116-83645135 | Msa0578960:CDS | 35.0% | |
| AAAGGGTTCATGGTTATCTA+TGG | - | chr4_1:83645126-83645145 | Msa0578960:CDS | 35.0% | |
| ! | ACAATAAAGGTGGTAGTGTT+AGG | + | chr4_1:83645180-83645199 | None:intergenic | 35.0% |
| TCAACATGTCATGGTATTTC+TGG | - | chr4_1:83645231-83645250 | Msa0578960:CDS | 35.0% | |
| CAACATGTCATGGTATTTCT+GGG | - | chr4_1:83645232-83645251 | Msa0578960:CDS | 35.0% | |
| ! | AACATGTCATGGTATTTCTG+GGG | - | chr4_1:83645233-83645252 | Msa0578960:CDS | 35.0% |
| TTGGATCTGTAGGATTTCTT+TGG | - | chr4_1:83645280-83645299 | Msa0578960:CDS | 35.0% | |
| TGGATCTGTAGGATTTCTTT+GGG | - | chr4_1:83645281-83645300 | Msa0578960:CDS | 35.0% | |
| AAAGCCTCACTTATCATACT+TGG | - | chr4_1:83645351-83645370 | Msa0578960:CDS | 35.0% | |
| ! | TTTTTCACCAAGGAAACCAT+GGG | - | chr4_1:83645408-83645427 | Msa0578960:CDS | 35.0% |
| !!! | ACAAGTAGTTTTTTCCCACT+AGG | + | chr4_1:83645580-83645599 | None:intergenic | 35.0% |
| !! | CTATGATGATGGCCTTGAAA+TGG | + | chr4_1:83642201-83642220 | None:intergenic | 40.0% |
| CATCTTTGTGATGAGTGTGA+TGG | + | chr4_1:83642263-83642282 | None:intergenic | 40.0% | |
| ACACTCATCACAAAGATGCT+AGG | - | chr4_1:83642265-83642284 | Msa0578960:exon | 40.0% | |
| TTCTTCTTAGGGCTTGGAAT+TGG | - | chr4_1:83642538-83642557 | Msa0578960:CDS | 40.0% | |
| AAGAGGTTCTTTCATAGCTG+CGG | - | chr4_1:83642615-83642634 | Msa0578960:CDS | 40.0% | |
| !!! | CTGCGGTTTTTTCTATGCAA+GGG | - | chr4_1:83642632-83642651 | Msa0578960:CDS | 40.0% |
| TAGTGCAACTGTTACTATGG+TGG | - | chr4_1:83642669-83642688 | Msa0578960:CDS | 40.0% | |
| !! | TGTTACTATGGTGGTTTGCT+TGG | - | chr4_1:83642678-83642697 | Msa0578960:CDS | 40.0% |
| CTGGCAAAAGATGAGAAAAC+TGG | - | chr4_1:83643764-83643783 | Msa0578960:intron | 40.0% | |
| AACTTAAACCACATGACGCA+AGG | + | chr4_1:83643974-83643993 | None:intergenic | 40.0% | |
| !! | TGGTGGTAATGGATTCTCTT+CGG | + | chr4_1:83644725-83644744 | None:intergenic | 40.0% |
| TTCTCTTGAAAGAAGAGGGT+AGG | + | chr4_1:83644761-83644780 | None:intergenic | 40.0% | |
| TGAAGAAGATGTGTACCAAG+AGG | - | chr4_1:83644906-83644925 | Msa0578960:intron | 40.0% | |
| GGTTTCCCTATTACTCTCAT+TGG | - | chr4_1:83645079-83645098 | Msa0578960:CDS | 40.0% | |
| TTGGGCATCACATAAAGAGA+AGG | - | chr4_1:83645299-83645318 | Msa0578960:CDS | 40.0% | |
| TCACATAAAGAGAAGGAGGA+AGG | - | chr4_1:83645306-83645325 | Msa0578960:CDS | 40.0% | |
| AAGGAGGAAGGATATCCTAA+GGG | - | chr4_1:83645318-83645337 | Msa0578960:CDS | 40.0% | |
| CCTCACTTATCATACTTGGA+GGG | - | chr4_1:83645355-83645374 | Msa0578960:CDS | 40.0% | |
| CTCACTTATCATACTTGGAG+GGG | - | chr4_1:83645356-83645375 | Msa0578960:CDS | 40.0% | |
| !! | CTTTTTCACCAAGGAAACCA+TGG | - | chr4_1:83645407-83645426 | Msa0578960:CDS | 40.0% |
| TTCTTCCAAAGATCTTCCCA+TGG | + | chr4_1:83645427-83645446 | None:intergenic | 40.0% | |
| TTCAAGGCCATCATCATAGC+AGG | - | chr4_1:83642202-83642221 | Msa0578960:three_prime_UTR | 45.0% | |
| GCCATCATCATAGCAGGAAT+GGG | - | chr4_1:83642208-83642227 | Msa0578960:three_prime_UTR | 45.0% | |
| TCCCATTCCTGCTATGATGA+TGG | + | chr4_1:83642212-83642231 | None:intergenic | 45.0% | |
| ! | TGATGAGTGTGATGGAGAAG+AGG | + | chr4_1:83642255-83642274 | None:intergenic | 45.0% |
| !! | TTGACGGATTTCTTGGTGGT+CGG | + | chr4_1:83642305-83642324 | None:intergenic | 45.0% |
| !! | TGACTTGACGGATTTCTTGG+TGG | + | chr4_1:83642309-83642328 | None:intergenic | 45.0% |
| !! | GGTTGACTTGACGGATTTCT+TGG | + | chr4_1:83642312-83642331 | None:intergenic | 45.0% |
| ! | CTAACAAGCTCTCTAGCTTC+TGG | - | chr4_1:83642457-83642476 | Msa0578960:CDS | 45.0% |
| TTCTTAGGGCTTGGAATTGG+TGG | - | chr4_1:83642541-83642560 | Msa0578960:CDS | 45.0% | |
| !!! | GCTGCGGTTTTTTCTATGCA+AGG | - | chr4_1:83642631-83642650 | Msa0578960:CDS | 45.0% |
| GGCTAGTGCAACTGTTACTA+TGG | - | chr4_1:83642666-83642685 | Msa0578960:CDS | 45.0% | |
| GTTTGCTTGGTATTTCGCAG+CGG | - | chr4_1:83642691-83642710 | Msa0578960:CDS | 45.0% | |
| AGAAACTACCTGGCAGTTTC+TGG | + | chr4_1:83642832-83642851 | None:intergenic | 45.0% | |
| TCATCGATCAGTCCTTGTCT+TGG | - | chr4_1:83643843-83643862 | Msa0578960:intron | 45.0% | |
| CATCGATCAGTCCTTGTCTT+GGG | - | chr4_1:83643844-83643863 | Msa0578960:intron | 45.0% | |
| TTACTTGAAGGCCCAAGACA+AGG | + | chr4_1:83643858-83643877 | None:intergenic | 45.0% | |
| ATAGAAAGGAACCATCCACG+TGG | - | chr4_1:83643923-83643942 | Msa0578960:intron | 45.0% | |
| ACAAAGCAAATCCACGTGGA+TGG | + | chr4_1:83643937-83643956 | None:intergenic | 45.0% | |
| GCAAACAAAGCAAATCCACG+TGG | + | chr4_1:83643941-83643960 | None:intergenic | 45.0% | |
| CGTACTATGGTGTGTGCATT+AGG | - | chr4_1:83644617-83644636 | Msa0578960:intron | 45.0% | |
| GTTGCAAGCTGCAAAAGACA+TGG | - | chr4_1:83644666-83644685 | Msa0578960:intron | 45.0% | |
| !! | GCATTTGTGGTTGGTGGTAA+TGG | + | chr4_1:83644736-83644755 | None:intergenic | 45.0% |
| AGAGAATTCTTGTGGCGACA+TGG | - | chr4_1:83644775-83644794 | Msa0578960:intron | 45.0% | |
| TTGCAAGATGGAAAGCCTCT+TGG | + | chr4_1:83644924-83644943 | None:intergenic | 45.0% | |
| ! | TGGCTTGGATTCTTGCAAGA+TGG | + | chr4_1:83644936-83644955 | None:intergenic | 45.0% |
| AGCAAACAGCAAGAATGGCT+TGG | + | chr4_1:83644951-83644970 | None:intergenic | 45.0% | |
| GGTAGAGCAAACAGCAAGAA+TGG | + | chr4_1:83644956-83644975 | None:intergenic | 45.0% | |
| TACGCGATCGATGAAGTAGA+CGG | + | chr4_1:83644998-83645017 | None:intergenic | 45.0% | |
| TTCAGCTGGGACAATAAAGG+TGG | + | chr4_1:83645190-83645209 | None:intergenic | 45.0% | |
| GAGTTCAGCTGGGACAATAA+AGG | + | chr4_1:83645193-83645212 | None:intergenic | 45.0% | |
| TAGCTGGAAAGAGTTCAGCT+GGG | + | chr4_1:83645203-83645222 | None:intergenic | 45.0% | |
| AACTCTTTCCAGCTAGGTTC+AGG | - | chr4_1:83645208-83645227 | Msa0578960:CDS | 45.0% | |
| AGGTTCAGGTCAACATGTCA+TGG | - | chr4_1:83645222-83645241 | Msa0578960:CDS | 45.0% | |
| !! | TATTTCTGGGGCTGTTGGTA+AGG | - | chr4_1:83645245-83645264 | Msa0578960:CDS | 45.0% |
| !! | GGTAAGGTTGGTGCAATCAT+TGG | - | chr4_1:83645261-83645280 | Msa0578960:CDS | 45.0% |
| GGTGCAATCATTGGATCTGT+AGG | - | chr4_1:83645270-83645289 | Msa0578960:CDS | 45.0% | |
| GGCATCACATAAAGAGAAGG+AGG | - | chr4_1:83645302-83645321 | Msa0578960:CDS | 45.0% | |
| GAAGGAGGAAGGATATCCTA+AGG | - | chr4_1:83645317-83645336 | Msa0578960:CDS | 45.0% | |
| AGGAGGAAGGATATCCTAAG+GGG | - | chr4_1:83645319-83645338 | Msa0578960:CDS | 45.0% | |
| GAAGGATATCCTAAGGGGAT+TGG | - | chr4_1:83645324-83645343 | Msa0578960:CDS | 45.0% | |
| GCTTTCATTCCAATCCCCTT+AGG | + | chr4_1:83645336-83645355 | None:intergenic | 45.0% | |
| GCCTCACTTATCATACTTGG+AGG | - | chr4_1:83645354-83645373 | Msa0578960:CDS | 45.0% | |
| CCCTCCAAGTATGATAAGTG+AGG | + | chr4_1:83645358-83645377 | None:intergenic | 45.0% | |
| AGATCTTCCCATGGTTTCCT+TGG | + | chr4_1:83645418-83645437 | None:intergenic | 45.0% | |
| GGAAACCATGGGAAGATCTT+TGG | - | chr4_1:83645419-83645438 | Msa0578960:CDS | 45.0% | |
| GGCCATCATCATAGCAGGAA+TGG | - | chr4_1:83642207-83642226 | Msa0578960:three_prime_UTR | 50.0% | |
| ATAAGGCGATACCGTAGACG+TGG | + | chr4_1:83642429-83642448 | None:intergenic | 50.0% | |
| ! | TGATGATGCCAGAAACTGCC+AGG | - | chr4_1:83642821-83642840 | Msa0578960:CDS | 50.0% |
| TAGGCAGCATTTGTGGTTGG+TGG | + | chr4_1:83644742-83644761 | None:intergenic | 50.0% | |
| AAGAGGGTAGGCAGCATTTG+TGG | + | chr4_1:83644749-83644768 | None:intergenic | 50.0% | |
| GCTGTTTGCTCTACCATTCC+CGG | - | chr4_1:83644961-83644980 | Msa0578960:CDS | 50.0% | |
| TAGACGGTGAAGAAGTAGCC+GGG | + | chr4_1:83644982-83645001 | None:intergenic | 50.0% | |
| GTAGACGGTGAAGAAGTAGC+CGG | + | chr4_1:83644983-83645002 | None:intergenic | 50.0% | |
| GTCTACTTCATCGATCGCGT+AGG | - | chr4_1:83644997-83645016 | Msa0578960:CDS | 50.0% | |
| CTAGCTGGAAAGAGTTCAGC+TGG | + | chr4_1:83645204-83645223 | None:intergenic | 50.0% | |
| CAGCTGAACTCTTTCCAGCT+AGG | - | chr4_1:83645202-83645221 | Msa0578960:CDS | 50.0% | |
| CATGTTGACCTGAACCTAGC+TGG | + | chr4_1:83645219-83645238 | None:intergenic | 50.0% | |
| !! | CATGGTATTTCTGGGGCTGT+TGG | - | chr4_1:83645240-83645259 | Msa0578960:CDS | 50.0% |
| !! | CCACGACTGGGTTGACTTGA+CGG | + | chr4_1:83642321-83642340 | None:intergenic | 55.0% |
| ! | TAGGAGTGCGACGGAGACAA+GGG | + | chr4_1:83642350-83642369 | None:intergenic | 55.0% |
| GAATAGGAGTTGGCCGAAGG+CGG | + | chr4_1:83642377-83642396 | None:intergenic | 55.0% | |
| GCCTTCGGCCAACTCCTATT+CGG | - | chr4_1:83642376-83642395 | Msa0578960:CDS | 55.0% | |
| TCCGAATAGGAGTTGGCCGA+AGG | + | chr4_1:83642380-83642399 | None:intergenic | 55.0% | |
| CAACTCCTATTCGGACGCCT+CGG | - | chr4_1:83642385-83642404 | Msa0578960:CDS | 55.0% | |
| ATTTCGCAGCGGTTCGAAGC+CGG | - | chr4_1:83642702-83642721 | Msa0578960:CDS | 55.0% | |
| GGCACATCAAAAGCCGTCTC+CGG | + | chr4_1:83642724-83642743 | None:intergenic | 55.0% | |
| GAGAGGGGCAAGAAACTACC+TGG | + | chr4_1:83642842-83642861 | None:intergenic | 55.0% | |
| GGGTAGGCAGCATTTGTGGT+TGG | + | chr4_1:83644745-83644764 | None:intergenic | 55.0% | |
| GGTGAAGAAGTAGCCGGGAA+TGG | + | chr4_1:83644977-83644996 | None:intergenic | 55.0% | |
| ! | TCTGGGGCTGTTGGTAAGGT+TGG | - | chr4_1:83645249-83645268 | Msa0578960:CDS | 55.0% |
| ! | ACTTGGAGGGGTGTGCATAG+TGG | - | chr4_1:83645368-83645387 | Msa0578960:CDS | 55.0% |
| ! | CTTGGAGGGGTGTGCATAGT+GGG | - | chr4_1:83645369-83645388 | Msa0578960:CDS | 55.0% |
| CCGTCAAGTCAACCCAGTCG+TGG | - | chr4_1:83642318-83642337 | Msa0578960:CDS | 60.0% | |
| CAAGGGCTGAGACCACGACT+GGG | + | chr4_1:83642333-83642352 | None:intergenic | 60.0% | |
| ACAAGGGCTGAGACCACGAC+TGG | + | chr4_1:83642334-83642353 | None:intergenic | 60.0% | |
| ! | CTAGGAGTGCGACGGAGACA+AGG | + | chr4_1:83642351-83642370 | None:intergenic | 60.0% |
| CTTGTCTCCGTCGCACTCCT+AGG | - | chr4_1:83642349-83642368 | Msa0578960:CDS | 60.0% | |
| GCACTCCTAGGAACCGCCTT+CGG | - | chr4_1:83642361-83642380 | Msa0578960:CDS | 60.0% | |
| ! | CGAGGCGTCCGAATAGGAGT+TGG | + | chr4_1:83642387-83642406 | None:intergenic | 60.0% |
| GGACGCCTCGGAGACCTAAA+AGG | - | chr4_1:83642397-83642416 | Msa0578960:CDS | 60.0% | |
| !! | GTCGGCCTTTTAGGTCTCCG+AGG | + | chr4_1:83642405-83642424 | None:intergenic | 60.0% |
| !!! | AGACGTGGCGTCGGCCTTTT+AGG | + | chr4_1:83642414-83642433 | None:intergenic | 60.0% |
| AAAGGCCGACGCCACGTCTA+CGG | - | chr4_1:83642415-83642434 | Msa0578960:CDS | 60.0% | |
| CGATACCGTAGACGTGGCGT+CGG | + | chr4_1:83642423-83642442 | None:intergenic | 60.0% | |
| ! | GACGGCTTTTGATGTGCCGC+CGG | - | chr4_1:83642726-83642745 | Msa0578960:CDS | 60.0% |
| CTCCATGCAACGTCAGCCTC+CGG | + | chr4_1:83642748-83642767 | None:intergenic | 60.0% | |
| GTACTGCACAGCACAGCACG+CGG | + | chr4_1:83643649-83643668 | None:intergenic | 60.0% | |
| ! | GGCGGTTCCTAGGAGTGCGA+CGG | + | chr4_1:83642359-83642378 | None:intergenic | 65.0% |
| GTTGGCCGAAGGCGGTTCCT+AGG | + | chr4_1:83642369-83642388 | None:intergenic | 65.0% | |
| ! | GGTCTCCGAGGCGTCCGAAT+AGG | + | chr4_1:83642393-83642412 | None:intergenic | 65.0% |
| CAGCGGTTCGAAGCCGGAGA+CGG | - | chr4_1:83642708-83642727 | Msa0578960:CDS | 65.0% | |
| ! | GGCTTTTGATGTGCCGCCGG+AGG | - | chr4_1:83642729-83642748 | Msa0578960:CDS | 65.0% |
| CATGCAACGTCAGCCTCCGG+CGG | + | chr4_1:83642745-83642764 | None:intergenic | 65.0% | |
| CGGAGGCTGACGTTGCATGG+AGG | - | chr4_1:83642746-83642765 | Msa0578960:CDS | 65.0% | |
| CGCCGGAGGCTGACGTTGCA+TGG | - | chr4_1:83642743-83642762 | Msa0578960:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 83642142 | 83645628 | 83642142 | ID=Msa0578960;Name=Msa0578960 |
| chr4_1 | mRNA | 83642142 | 83645628 | 83642142 | ID=Msa0578960-mRNA-1;Parent=Msa0578960;Name=Msa0578960-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0.5|1|1|1|2|134|518 |
| chr4_1 | exon | 83642142 | 83643131 | 83642142 | ID=Msa0578960-mRNA-1:exon:30522;Parent=Msa0578960-mRNA-1 |
| chr4_1 | exon | 83644928 | 83645628 | 83644928 | ID=Msa0578960-mRNA-1:exon:30521;Parent=Msa0578960-mRNA-1 |
| chr4_1 | CDS | 83644928 | 83645628 | 83644928 | ID=Msa0578960-mRNA-1:cds;Parent=Msa0578960-mRNA-1 |
| chr4_1 | CDS | 83642276 | 83643131 | 83642276 | ID=Msa0578960-mRNA-1:cds;Parent=Msa0578960-mRNA-1 |
| chr4_1 | three_prime_UTR | 83642142 | 83642275 | 83642142 | ID=Msa0578960-mRNA-1:three_prime_utr;Parent=Msa0578960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
