Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610580 | XP_003607875.1 | 99.035 | 518 | 5 | 0 | 1 | 518 | 1 | 518 | 0.0 | 1061 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610580 | sp|Q9S735|PHT19_ARATH | 64.078 | 515 | 168 | 7 | 5 | 507 | 4 | 513 | 0.0 | 676 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0092970 | Msa0610580 | 0.801633 | 8.213361e-49 | -8.615850e-47 |
| Msa0608980 | Msa0610580 | 0.827899 | 1.212134e-54 | -8.615850e-47 |
| Msa0610580 | Msa0650560 | 0.807673 | 4.506737e-50 | -8.615850e-47 |
| Msa0610580 | Msa0651170 | 0.842460 | 2.550603e-58 | -8.615850e-47 |
| Msa0610580 | Msa0662580 | 0.809405 | 1.923145e-50 | -8.615850e-47 |
| Msa0610580 | Msa0693240 | 0.999434 | 2.612666e-311 | -8.615850e-47 |
| Msa0610580 | Msa0717860 | 0.824081 | 9.792761e-54 | -8.615850e-47 |
| Msa0610580 | Msa0758520 | 0.835115 | 2.024928e-56 | -8.615850e-47 |
| Msa0610580 | Msa0758570 | 0.831943 | 1.252822e-55 | -8.615850e-47 |
| Msa0610580 | Msa0838870 | 0.824175 | 9.308292e-54 | -8.615850e-47 |
| Msa0610580 | Msa1027910 | 0.839301 | 1.719846e-57 | -8.615850e-47 |
| Msa0610580 | Msa1084890 | 0.852853 | 3.514984e-61 | -8.615850e-47 |
| Msa0610580 | Msa1405500 | 0.800647 | 1.306586e-48 | -8.615850e-47 |
| Msa0185100 | Msa0610580 | 0.815693 | 8.110736e-52 | -8.615850e-47 |
| Msa0193190 | Msa0610580 | 0.812812 | 3.511009e-51 | -8.615850e-47 |
| Msa0442690 | Msa0610580 | 0.803102 | 4.091987e-49 | -8.615850e-47 |
| Msa0247470 | Msa0610580 | 0.817343 | 3.463554e-52 | -8.615850e-47 |
| Msa0273070 | Msa0610580 | 0.817975 | 2.494533e-52 | -8.615850e-47 |
| Msa0324840 | Msa0610580 | 0.818563 | 1.836405e-52 | -8.615850e-47 |
| Msa0490110 | Msa0610580 | 0.847455 | 1.144163e-59 | -8.615850e-47 |
| Msa0578960 | Msa0610580 | 0.996130 | 9.364565e-224 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610580 | MtrunA17_Chr4g0043571 | 99.035 | 518 | 5 | 0 | 1 | 518 | 1 | 518 | 0.0 | 1061 |
| Msa0610580 | MtrunA17_Chr1g0186821 | 54.887 | 532 | 216 | 10 | 1 | 513 | 1 | 527 | 0.0 | 545 |
| Msa0610580 | MtrunA17_Chr1g0167741 | 54.034 | 533 | 221 | 10 | 1 | 514 | 1 | 528 | 0.0 | 537 |
| Msa0610580 | MtrunA17_Chr1g0167731 | 54.253 | 529 | 222 | 9 | 1 | 514 | 1 | 524 | 0.0 | 537 |
| Msa0610580 | MtrunA17_Chr1g0167761 | 54.221 | 533 | 220 | 10 | 1 | 514 | 1 | 528 | 0.0 | 537 |
| Msa0610580 | MtrunA17_Chr3g0120761 | 55.233 | 516 | 211 | 10 | 1 | 501 | 1 | 511 | 0.0 | 535 |
| Msa0610580 | MtrunA17_Chr1g0183921 | 52.571 | 525 | 217 | 10 | 3 | 508 | 4 | 515 | 0.0 | 528 |
| Msa0610580 | MtrunA17_Chr7g0261231 | 52.345 | 533 | 222 | 11 | 5 | 518 | 6 | 525 | 0.0 | 519 |
| Msa0610580 | MtrunA17_Chr7g0261241 | 51.769 | 537 | 213 | 12 | 5 | 510 | 6 | 527 | 1.06e-177 | 510 |
| Msa0610580 | MtrunA17_Chr1g0186831 | 52.745 | 510 | 213 | 10 | 5 | 501 | 6 | 500 | 9.23e-177 | 507 |
| Msa0610580 | MtrunA17_Chr1g0183911 | 50.662 | 529 | 225 | 12 | 1 | 507 | 1 | 515 | 4.05e-172 | 496 |
| Msa0610580 | MtrunA17_Chr1g0158991 | 49.615 | 520 | 238 | 11 | 4 | 513 | 2 | 507 | 1.51e-163 | 474 |
| Msa0610580 | MtrunA17_Chr5g0428481 | 47.905 | 549 | 236 | 13 | 1 | 514 | 1 | 534 | 3.41e-157 | 459 |
| Msa0610580 | MtrunA17_Chr6g0485661 | 24.951 | 513 | 306 | 17 | 12 | 500 | 45 | 502 | 4.77e-20 | 93.2 |
| Msa0610580 | MtrunA17_Chr7g0214451 | 22.088 | 498 | 310 | 17 | 26 | 505 | 39 | 476 | 5.05e-14 | 74.3 |
| Msa0610580 | MtrunA17_Chr3g0121674 | 24.590 | 305 | 194 | 8 | 211 | 503 | 1 | 281 | 1.66e-13 | 71.6 |
| Msa0610580 | MtrunA17_Chr4g0036021 | 21.503 | 479 | 288 | 15 | 61 | 505 | 60 | 484 | 2.60e-12 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610580 | AT1G76430.1 | 64.078 | 515 | 168 | 7 | 5 | 507 | 4 | 513 | 0.0 | 676 |
| Msa0610580 | AT1G20860.2 | 63.410 | 522 | 175 | 7 | 5 | 517 | 55 | 569 | 0.0 | 666 |
| Msa0610580 | AT1G20860.1 | 63.410 | 522 | 175 | 7 | 5 | 517 | 3 | 517 | 0.0 | 665 |
| Msa0610580 | AT5G43350.1 | 54.302 | 523 | 215 | 11 | 5 | 510 | 6 | 521 | 0.0 | 540 |
| Msa0610580 | AT5G43360.1 | 54.247 | 518 | 215 | 11 | 5 | 507 | 6 | 516 | 0.0 | 535 |
| Msa0610580 | AT2G38940.1 | 54.038 | 520 | 215 | 13 | 1 | 503 | 1 | 513 | 0.0 | 525 |
| Msa0610580 | AT3G54700.2 | 53.640 | 522 | 221 | 11 | 5 | 513 | 6 | 519 | 0.0 | 524 |
| Msa0610580 | AT3G54700.1 | 53.640 | 522 | 221 | 11 | 5 | 513 | 6 | 519 | 0.0 | 524 |
| Msa0610580 | AT5G43370.1 | 54.183 | 526 | 217 | 11 | 5 | 513 | 6 | 524 | 2.06e-179 | 514 |
| Msa0610580 | AT5G43370.2 | 54.183 | 526 | 217 | 11 | 5 | 513 | 6 | 524 | 2.06e-179 | 514 |
| Msa0610580 | AT2G32830.1 | 52.190 | 525 | 225 | 11 | 3 | 508 | 4 | 521 | 2.69e-178 | 513 |
| Msa0610580 | AT5G43340.1 | 51.758 | 512 | 222 | 10 | 6 | 507 | 8 | 504 | 3.26e-171 | 493 |
| Msa0610580 | AT4G08878.1 | 54.701 | 234 | 90 | 5 | 30 | 252 | 13 | 241 | 2.70e-72 | 231 |
| Msa0610580 | AT4G08895.1 | 42.647 | 136 | 43 | 3 | 318 | 453 | 30 | 130 | 5.46e-27 | 107 |
| Msa0610580 | AT2G43330.1 | 22.335 | 394 | 252 | 11 | 132 | 512 | 131 | 483 | 1.17e-14 | 77.0 |
| Msa0610580 | AT3G18830.1 | 23.774 | 530 | 302 | 21 | 15 | 506 | 31 | 496 | 6.57e-12 | 68.6 |
Find 140 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTTCTTCTTTGCAAATTT+TGG | 0.012899 | 4_2:-58403668 | Msa0610580:CDS |
| TCAACATGTCATGGTATTTC+TGG | 0.184785 | 4_2:-58403590 | Msa0610580:CDS |
| ATGGATTCTCTTCGGTTATT+TGG | 0.195842 | 4_2:+58404107 | None:intergenic |
| AGAAACTACCTGGCAGTTTC+TGG | 0.216451 | 4_2:+58405992 | None:intergenic |
| GGTTTCTTTAGATTCTTCTT+AGG | 0.224645 | 4_2:-58406295 | Msa0610580:CDS |
| TGTCTGAGTTTGCTAATAAA+AGG | 0.237042 | 4_2:-58406231 | Msa0610580:CDS |
| TTTGGTCCAATGAGAGTAAT+AGG | 0.245047 | 4_2:+58403736 | None:intergenic |
| TATGCAAGGGTTTGGTATAT+TGG | 0.253824 | 4_2:-58406176 | Msa0610580:CDS |
| TTGGATCTGTAGGATTTCTT+TGG | 0.269360 | 4_2:-58403541 | Msa0610580:CDS |
| CTCATAACTTTATTCAAAAC+TGG | 0.274561 | 4_2:+58403219 | None:intergenic |
| CAGCTGCATTGACTTATTAT+TGG | 0.282392 | 4_2:-58406027 | Msa0610580:CDS |
| GGTTGACTTGACGGATTTCT+TGG | 0.294025 | 4_2:+58406512 | None:intergenic |
| GCTGTTTGCTCTACCATTCC+CGG | 0.304136 | 4_2:-58403860 | Msa0610580:CDS |
| TTTAGATTCTTCTTAGGGCT+TGG | 0.319569 | 4_2:-58406289 | Msa0610580:CDS |
| TGGATCTGTAGGATTTCTTT+GGG | 0.330065 | 4_2:-58403540 | Msa0610580:CDS |
| GGCTAGTGCAACTGTTACTA+TGG | 0.333298 | 4_2:-58406155 | Msa0610580:CDS |
| GGAAACCATGGGAAGATCTT+TGG | 0.341697 | 4_2:-58403402 | Msa0610580:CDS |
| GCATTTGTGGTTGGTGGTAA+TGG | 0.351217 | 4_2:+58404088 | None:intergenic |
| AACTCTTTCCAGCTAGGTTC+AGG | 0.354273 | 4_2:-58403613 | Msa0610580:CDS |
| GTTTCTTTAGATTCTTCTTA+GGG | 0.354585 | 4_2:-58406294 | Msa0610580:CDS |
| GCTTGTTAGCATCAATAATA+AGG | 0.362995 | 4_2:+58406378 | None:intergenic |
| AGCTCTCTTTGTTGTACATA+TGG | 0.368396 | 4_2:+58406336 | None:intergenic |
| TCTGGGGCTGTTGGTAAGGT+TGG | 0.368628 | 4_2:-58403572 | Msa0610580:CDS |
| GGACGCCTCGGAGACCTAAA+AGG | 0.373921 | 4_2:-58406424 | Msa0610580:CDS |
| GGTTTCCCTATTACTCTCAT+TGG | 0.377430 | 4_2:-58403742 | Msa0610580:CDS |
| GACATAATGGTAGAAGATAA+AGG | 0.378353 | 4_2:+58406250 | None:intergenic |
| TTCTTCTTAGGGCTTGGAAT+TGG | 0.379282 | 4_2:-58406283 | Msa0610580:CDS |
| TTCTTAGGGCTTGGAATTGG+TGG | 0.382861 | 4_2:-58406280 | Msa0610580:CDS |
| ATTAGCAAACTCAGACATAA+TGG | 0.389302 | 4_2:+58406237 | None:intergenic |
| GGTCTCCGAGGCGTCCGAAT+AGG | 0.396679 | 4_2:+58406431 | None:intergenic |
| ACAATAAAGGTGGTAGTGTT+AGG | 0.397982 | 4_2:+58403644 | None:intergenic |
| TCATGATAACAAAGGGTTCA+TGG | 0.404520 | 4_2:-58403705 | Msa0610580:CDS |
| CTAACAAGCTCTCTAGCTTC+TGG | 0.406505 | 4_2:-58406364 | Msa0610580:CDS |
| CAACATGTCATGGTATTTCT+GGG | 0.410467 | 4_2:-58403589 | Msa0610580:CDS |
| AGATCTTCCCATGGTTTCCT+TGG | 0.413802 | 4_2:+58403406 | None:intergenic |
| CCACGACTGGGTTGACTTGA+CGG | 0.422761 | 4_2:+58406503 | None:intergenic |
| AAAGGGTTCATGGTTATCTA+TGG | 0.427006 | 4_2:-58403695 | Msa0610580:CDS |
| TGTTACTATGGTGGTTTGCT+TGG | 0.428921 | 4_2:-58406143 | Msa0610580:CDS |
| GGTAAGGTTGGTGCAATCAT+TGG | 0.429582 | 4_2:-58403560 | Msa0610580:CDS |
| TATTTCTGGGGCTGTTGGTA+AGG | 0.444891 | 4_2:-58403576 | Msa0610580:CDS |
| GCCTTCGGCCAACTCCTATT+CGG | 0.447789 | 4_2:-58406445 | Msa0610580:CDS |
| AAGAGTTAAAATCCAAATGA+TGG | 0.452565 | 4_2:-58403801 | Msa0610580:CDS |
| CTTGTCTCCGTCGCACTCCT+AGG | 0.457221 | 4_2:-58406472 | Msa0610580:CDS |
| GTTGGCCGAAGGCGGTTCCT+AGG | 0.459158 | 4_2:+58406455 | None:intergenic |
| CGCCGGAGGCTGACGTTGCA+TGG | 0.463769 | 4_2:-58406078 | Msa0610580:CDS |
| AACACAATACTACCATTTCA+AGG | 0.465634 | 4_2:-58406635 | Msa0610580:CDS |
| TGGTGGTAATGGATTCTCTT+CGG | 0.465888 | 4_2:+58404099 | None:intergenic |
| CAGCTGAACTCTTTCCAGCT+AGG | 0.466833 | 4_2:-58403619 | Msa0610580:CDS |
| GCTTTCATTCCAATCCCCTT+AGG | 0.467608 | 4_2:+58403488 | None:intergenic |
| CTCCATGCAACGTCAGCCTC+CGG | 0.468310 | 4_2:+58406076 | None:intergenic |
| GAGTTCAGCTGGGACAATAA+AGG | 0.470332 | 4_2:+58403631 | None:intergenic |
| ATCGTTTGTATATTTCACTT+TGG | 0.472004 | 4_2:+58403954 | None:intergenic |
| CTTGGAGGGGTGTGCATAGT+GGG | 0.472095 | 4_2:-58403452 | Msa0610580:CDS |
| AAGAATTCTCTTGAAAGAAG+AGG | 0.472184 | 4_2:+58404058 | None:intergenic |
| GAAAATGGCAAGAGGATTGA+AGG | 0.478791 | 4_2:-58406683 | None:intergenic |
| CATGTTGACCTGAACCTAGC+TGG | 0.479877 | 4_2:+58403605 | None:intergenic |
| CTAGCTGGAAAGAGTTCAGC+TGG | 0.480788 | 4_2:+58403620 | None:intergenic |
| AAAGCCTCACTTATCATACT+TGG | 0.482489 | 4_2:-58403470 | Msa0610580:CDS |
| GGTAGAGCAAACAGCAAGAA+TGG | 0.483548 | 4_2:+58403868 | None:intergenic |
| CTATGATGATGGCCTTGAAA+TGG | 0.485108 | 4_2:+58406623 | None:intergenic |
| TTTCACTTTGGAATAGAACT+TGG | 0.486743 | 4_2:+58403966 | None:intergenic |
| AAGAGGGTAGGCAGCATTTG+TGG | 0.490158 | 4_2:+58404075 | None:intergenic |
| CATTAGGTATACAGCATTAG+TGG | 0.491216 | 4_2:-58404188 | Msa0610580:intron |
| TGGAGGTTGATATTGATGAT+TGG | 0.491970 | 4_2:-58406058 | Msa0610580:CDS |
| GAAGGAGGAAGGATATCCTA+AGG | 0.492281 | 4_2:-58403504 | Msa0610580:CDS |
| GAGAAAATCATGATAACAAA+GGG | 0.493974 | 4_2:-58403712 | Msa0610580:CDS |
| ACAAGGGCTGAGACCACGAC+TGG | 0.495093 | 4_2:+58406490 | None:intergenic |
| TTGCAAGATGGAAAGCCTCT+TGG | 0.498386 | 4_2:+58403900 | None:intergenic |
| GGCACATCAAAAGCCGTCTC+CGG | 0.505349 | 4_2:+58406100 | None:intergenic |
| ATTTCGCAGCGGTTCGAAGC+CGG | 0.506942 | 4_2:-58406119 | Msa0610580:CDS |
| GCCTCACTTATCATACTTGG+AGG | 0.509162 | 4_2:-58403467 | Msa0610580:CDS |
| TTGACGGATTTCTTGGTGGT+CGG | 0.509656 | 4_2:+58406519 | None:intergenic |
| CAGCGGTTCGAAGCCGGAGA+CGG | 0.512536 | 4_2:-58406113 | Msa0610580:CDS |
| TGGCTTGGATTCTTGCAAGA+TGG | 0.513731 | 4_2:+58403888 | None:intergenic |
| TTGGTCCAATGAGAGTAATA+GGG | 0.517347 | 4_2:+58403737 | None:intergenic |
| GAAGGATATCCTAAGGGGAT+TGG | 0.519052 | 4_2:-58403497 | Msa0610580:CDS |
| GCCATCATCATAGCAGGAAT+GGG | 0.519478 | 4_2:-58406613 | Msa0610580:CDS |
| ACTTGGAGGGGTGTGCATAG+TGG | 0.520704 | 4_2:-58403453 | Msa0610580:CDS |
| TCCCATTCCTGCTATGATGA+TGG | 0.520757 | 4_2:+58406612 | None:intergenic |
| AAGATCTTTGGAAGAAAATG+AGG | 0.523433 | 4_2:-58403390 | Msa0610580:CDS |
| GGCCATCATCATAGCAGGAA+TGG | 0.527722 | 4_2:-58406614 | Msa0610580:CDS |
| AGAGTTAAAATCCAAATGAT+GGG | 0.528348 | 4_2:-58403800 | Msa0610580:CDS |
| GGTGCAATCATTGGATCTGT+AGG | 0.529168 | 4_2:-58403551 | Msa0610580:CDS |
| TTCTTTCAAGAGAATTCTTG+TGG | 0.530678 | 4_2:-58404054 | Msa0610580:CDS |
| TAGGCAGCATTTGTGGTTGG+TGG | 0.531743 | 4_2:+58404082 | None:intergenic |
| AGCAAACAGCAAGAATGGCT+TGG | 0.533200 | 4_2:+58403873 | None:intergenic |
| CATGGTATTTCTGGGGCTGT+TGG | 0.533358 | 4_2:-58403581 | Msa0610580:CDS |
| TTCAAGGCCATCATCATAGC+AGG | 0.537123 | 4_2:-58406619 | Msa0610580:CDS |
| TGACTTGACGGATTTCTTGG+TGG | 0.538931 | 4_2:+58406515 | None:intergenic |
| GCACTCCTAGGAACCGCCTT+CGG | 0.541368 | 4_2:-58406460 | Msa0610580:CDS |
| TGATGATGCCAGAAACTGCC+AGG | 0.550572 | 4_2:-58406000 | Msa0610580:intron |
| CTAGGAGTGCGACGGAGACA+AGG | 0.555040 | 4_2:+58406473 | None:intergenic |
| CAATAATAAGTCAATGCAGC+TGG | 0.561487 | 4_2:+58406028 | None:intergenic |
| TTCTTCCAAAGATCTTCCCA+TGG | 0.566058 | 4_2:+58403397 | None:intergenic |
| CGAGGCGTCCGAATAGGAGT+TGG | 0.566689 | 4_2:+58406437 | None:intergenic |
| GGGTAGGCAGCATTTGTGGT+TGG | 0.568959 | 4_2:+58404079 | None:intergenic |
| TTTGCTAATAAAAGGACAAG+AGG | 0.571218 | 4_2:-58406223 | Msa0610580:CDS |
| GGAGAAAATCATGATAACAA+AGG | 0.571581 | 4_2:-58403713 | Msa0610580:CDS |
| AGAATTCTCTTGAAAGAAGA+GGG | 0.572284 | 4_2:+58404059 | None:intergenic |
| AAAGGCCGACGCCACGTCTA+CGG | 0.572932 | 4_2:-58406406 | Msa0610580:CDS |
| CCTCACTTATCATACTTGGA+GGG | 0.573294 | 4_2:-58403466 | Msa0610580:CDS |
| CAACTCCTATTCGGACGCCT+CGG | 0.577300 | 4_2:-58406436 | Msa0610580:CDS |
| AAGGAGGAAGGATATCCTAA+GGG | 0.582496 | 4_2:-58403503 | Msa0610580:CDS |
| GGTGAAGAAGTAGCCGGGAA+TGG | 0.582583 | 4_2:+58403847 | None:intergenic |
| CAAAATCAGAAAATGGCAAG+AGG | 0.585475 | 4_2:-58406691 | None:intergenic |
| TCCGAATAGGAGTTGGCCGA+AGG | 0.586471 | 4_2:+58406444 | None:intergenic |
| TAGACGGTGAAGAAGTAGCC+GGG | 0.588557 | 4_2:+58403842 | None:intergenic |
| AGAGAATTCTTGTGGCGACA+TGG | 0.588933 | 4_2:-58404046 | Msa0610580:CDS |
| TATTACTCTCATTGGACCAA+AGG | 0.589189 | 4_2:-58403734 | Msa0610580:CDS |
| ACACTCATCACAAAGATGCT+AGG | 0.592024 | 4_2:-58406556 | Msa0610580:CDS |
| TAGTGCAACTGTTACTATGG+TGG | 0.593095 | 4_2:-58406152 | Msa0610580:CDS |
| TTGGGCATCACATAAAGAGA+AGG | 0.594444 | 4_2:-58403522 | Msa0610580:CDS |
| GTAGACGGTGAAGAAGTAGC+CGG | 0.596248 | 4_2:+58403841 | None:intergenic |
| CTCACTTATCATACTTGGAG+GGG | 0.600686 | 4_2:-58403465 | Msa0610580:CDS |
| TTCTCTTGAAAGAAGAGGGT+AGG | 0.600721 | 4_2:+58404063 | None:intergenic |
| TCACATAAAGAGAAGGAGGA+AGG | 0.604798 | 4_2:-58403515 | Msa0610580:CDS |
| AGGTTCAGGTCAACATGTCA+TGG | 0.614954 | 4_2:-58403599 | Msa0610580:CDS |
| CATGCAACGTCAGCCTCCGG+CGG | 0.616211 | 4_2:+58406079 | None:intergenic |
| AAGAGGTTCTTTCATAGCTG+CGG | 0.616245 | 4_2:-58406206 | Msa0610580:CDS |
| TGATGAGTGTGATGGAGAAG+AGG | 0.617684 | 4_2:+58406569 | None:intergenic |
| CATCTTTGTGATGAGTGTGA+TGG | 0.618124 | 4_2:+58406561 | None:intergenic |
| AACATGTCATGGTATTTCTG+GGG | 0.624270 | 4_2:-58403588 | Msa0610580:CDS |
| GAATAGGAGTTGGCCGAAGG+CGG | 0.628666 | 4_2:+58406447 | None:intergenic |
| GGCATCACATAAAGAGAAGG+AGG | 0.629025 | 4_2:-58403519 | Msa0610580:CDS |
| GGCGGTTCCTAGGAGTGCGA+CGG | 0.633327 | 4_2:+58406465 | None:intergenic |
| TAGGAGTGCGACGGAGACAA+GGG | 0.636930 | 4_2:+58406474 | None:intergenic |
| CGATACCGTAGACGTGGCGT+CGG | 0.639282 | 4_2:+58406401 | None:intergenic |
| CAAGGGCTGAGACCACGACT+GGG | 0.639760 | 4_2:+58406491 | None:intergenic |
| AGGAGGAAGGATATCCTAAG+GGG | 0.642903 | 4_2:-58403502 | Msa0610580:CDS |
| TGAAGAAGATGTGTACCAAG+AGG | 0.649402 | 4_2:-58403915 | Msa0610580:CDS |
| CCGTCAAGTCAACCCAGTCG+TGG | 0.651286 | 4_2:-58406503 | Msa0610580:CDS |
| GTTGCAAGCTGCAAAAGACA+TGG | 0.660760 | 4_2:-58404155 | Msa0610580:CDS |
| TTCAGCTGGGACAATAAAGG+TGG | 0.666270 | 4_2:+58403634 | None:intergenic |
| TAGCTGGAAAGAGTTCAGCT+GGG | 0.667181 | 4_2:+58403621 | None:intergenic |
| CCCTCCAAGTATGATAAGTG+AGG | 0.670122 | 4_2:+58403466 | None:intergenic |
| TACGCGATCGATGAAGTAGA+CGG | 0.672938 | 4_2:+58403826 | None:intergenic |
| GTTTGCTTGGTATTTCGCAG+CGG | 0.690623 | 4_2:-58406130 | Msa0610580:CDS |
| CGGAGGCTGACGTTGCATGG+AGG | 0.694489 | 4_2:-58406075 | Msa0610580:CDS |
| ATAAGGCGATACCGTAGACG+TGG | 0.708896 | 4_2:+58406395 | None:intergenic |
| GTCTACTTCATCGATCGCGT+AGG | 0.713972 | 4_2:-58403824 | Msa0610580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATTAAATATAAAAAA+TGG | - | chr4_2:58404132-58404151 | Msa0610580:CDS | 0.0% |
| !!! | TAAAATTTTAAAATTTTATA+AGG | + | chr4_2:58404459-58404478 | None:intergenic | 0.0% |
| !! | TTAAAATCAAATGAAAATAA+TGG | - | chr4_2:58404799-58404818 | Msa0610580:intron | 10.0% |
| !! | ATAAAATTAAAATTCAACTA+GGG | + | chr4_2:58404889-58404908 | None:intergenic | 10.0% |
| !! | TATAAAATTAAAATTCAACT+AGG | + | chr4_2:58404890-58404909 | None:intergenic | 10.0% |
| !!! | TATAAATTTCAAAAGTACAA+TGG | + | chr4_2:58404104-58404123 | None:intergenic | 15.0% |
| !! | GTGTATGTATAAAAAAAATT+AGG | - | chr4_2:58404177-58404196 | Msa0610580:CDS | 15.0% |
| !!! | AAATGCATTATTTAAAACAA+GGG | + | chr4_2:58404670-58404689 | None:intergenic | 15.0% |
| !!! | AAAATGCATTATTTAAAACA+AGG | + | chr4_2:58404671-58404690 | None:intergenic | 15.0% |
| !! | CTAAAACATTGTTAATTAAA+TGG | + | chr4_2:58404960-58404979 | None:intergenic | 15.0% |
| !! | AATAATTAGTATAGAAAATG+CGG | - | chr4_2:58405151-58405170 | Msa0610580:intron | 15.0% |
| !!! | ATTAATTTAATTTAAAGGTG+TGG | - | chr4_2:58405177-58405196 | Msa0610580:intron | 15.0% |
| !! | AGTAAATAAATGAACAACAA+TGG | + | chr4_2:58404063-58404082 | None:intergenic | 20.0% |
| !!! | TGTTCATTTATTTACTTTTG+TGG | - | chr4_2:58404067-58404086 | Msa0610580:CDS | 20.0% |
| !!! | AAAATTCTTCAACTTTTAGT+CGG | - | chr4_2:58404496-58404515 | Msa0610580:intron | 20.0% |
| !! | ATGGTATTAATTAAATGTAC+TGG | - | chr4_2:58404818-58404837 | Msa0610580:intron | 20.0% |
| !!! | GCATTTTCTATACTAATTAT+TGG | + | chr4_2:58405152-58405171 | None:intergenic | 20.0% |
| !!! | GGCTGATTAATTTAATTTAA+AGG | - | chr4_2:58405172-58405191 | Msa0610580:intron | 20.0% |
| !! | AATAACATTATCTTGTTACT+AGG | - | chr4_2:58405248-58405267 | Msa0610580:intron | 20.0% |
| !! | ATAACATTATCTTGTTACTA+GGG | - | chr4_2:58405249-58405268 | Msa0610580:intron | 20.0% |
| !! | TTTAAGGGAAAAAAATATTG+GGG | + | chr4_2:58405288-58405307 | None:intergenic | 20.0% |
| !! | GTTTAAGGGAAAAAAATATT+GGG | + | chr4_2:58405289-58405308 | None:intergenic | 20.0% |
| !! | TGTTTAAGGGAAAAAAATAT+TGG | + | chr4_2:58405290-58405309 | None:intergenic | 20.0% |
| !!! | TTCAGTTGATCATTTATTTT+TGG | - | chr4_2:58405499-58405518 | Msa0610580:intron | 20.0% |
| !!! | TCAAAACCTTATCTAAAATT+TGG | - | chr4_2:58405569-58405588 | Msa0610580:intron | 20.0% |
| !!! | AATTGAAGTACTATTATGTT+CGG | + | chr4_2:58405605-58405624 | None:intergenic | 20.0% |
| ! | GTTTCTTTAGATTCTTCTTA+GGG | - | chr4_2:58403600-58403619 | Msa0610580:CDS | 25.0% |
| ! | ATAAATATGTGAAGTAGAGA+GGG | + | chr4_2:58403931-58403950 | None:intergenic | 25.0% |
| ! | TATAAATATGTGAAGTAGAG+AGG | + | chr4_2:58403932-58403951 | None:intergenic | 25.0% |
| ! | GAATAAAAAAAGTGAACACT+AGG | + | chr4_2:58404206-58404225 | None:intergenic | 25.0% |
| ! | AAAATATACTGATGTCTTCA+TGG | + | chr4_2:58404558-58404577 | None:intergenic | 25.0% |
| ! | AAATAAGAAAGTCATAGGTA+CGG | + | chr4_2:58404747-58404766 | None:intergenic | 25.0% |
| !! | TACCTATGACTTTCTTATTT+GGG | - | chr4_2:58404747-58404766 | Msa0610580:intron | 25.0% |
| ! | AAATGGTTAAACTTACTTGA+AGG | + | chr4_2:58404943-58404962 | None:intergenic | 25.0% |
| !!! | AACAATGTTTTAGTCAAAGA+AGG | - | chr4_2:58404967-58404986 | Msa0610580:intron | 25.0% |
| ! | AAAGAAGGAATAGAATAGAA+AGG | - | chr4_2:58404982-58405001 | Msa0610580:intron | 25.0% |
| ! | TTATATATTGAGTGATCGAT+TGG | - | chr4_2:58405073-58405092 | Msa0610580:intron | 25.0% |
| ! | AATTATTGGCATTCTCTTAT+TGG | + | chr4_2:58405138-58405157 | None:intergenic | 25.0% |
| !!! | TTTTTTTCCCTTAAACAAAG+TGG | - | chr4_2:58405293-58405312 | Msa0610580:intron | 25.0% |
| !! | GTATTTACCACTTTGTTTAA+GGG | + | chr4_2:58405303-58405322 | None:intergenic | 25.0% |
| !!! | ATGTATGTGTGAGTTTTAAA+CGG | + | chr4_2:58405325-58405344 | None:intergenic | 25.0% |
| ! | CCTTAATACAAGTTTGAATT+CGG | + | chr4_2:58405358-58405377 | None:intergenic | 25.0% |
| ! | CACTTATTATCGAAATGAAT+TGG | + | chr4_2:58405440-58405459 | None:intergenic | 25.0% |
| ! | TAAATTAACATCGACAAAGT+TGG | + | chr4_2:58405469-58405488 | None:intergenic | 25.0% |
| !!! | AGTTGATCATTTATTTTTGG+TGG | - | chr4_2:58405502-58405521 | Msa0610580:intron | 25.0% |
| !! | CATTGCATTTTTAATGTTCA+TGG | - | chr4_2:58405646-58405665 | Msa0610580:intron | 25.0% |
| ! | AACAATTGAATAACGTACTA+TGG | - | chr4_2:58405677-58405696 | Msa0610580:intron | 25.0% |
| ! | ATCGTTTGTATATTTCACTT+TGG | + | chr4_2:58405943-58405962 | None:intergenic | 25.0% |
| ! | AAGAGTTAAAATCCAAATGA+TGG | - | chr4_2:58406093-58406112 | Msa0610580:CDS | 25.0% |
| ! | AGAGTTAAAATCCAAATGAT+GGG | - | chr4_2:58406094-58406113 | Msa0610580:CDS | 25.0% |
| ! | GAGAAAATCATGATAACAAA+GGG | - | chr4_2:58406182-58406201 | Msa0610580:CDS | 25.0% |
| ! | CTCATAACTTTATTCAAAAC+TGG | + | chr4_2:58406678-58406697 | None:intergenic | 25.0% |
| AACACAATACTACCATTTCA+AGG | - | chr4_2:58403259-58403278 | Msa0610580:three_prime_UTR | 30.0% | |
| ! | GCTTGTTAGCATCAATAATA+AGG | + | chr4_2:58403519-58403538 | None:intergenic | 30.0% |
| GGTTTCTTTAGATTCTTCTT+AGG | - | chr4_2:58403599-58403618 | Msa0610580:CDS | 30.0% | |
| GACATAATGGTAGAAGATAA+AGG | + | chr4_2:58403647-58403666 | None:intergenic | 30.0% | |
| ATTAGCAAACTCAGACATAA+TGG | + | chr4_2:58403660-58403679 | None:intergenic | 30.0% | |
| !! | TGTCTGAGTTTGCTAATAAA+AGG | - | chr4_2:58403663-58403682 | Msa0610580:CDS | 30.0% |
| TTTGCTAATAAAAGGACAAG+AGG | - | chr4_2:58403671-58403690 | Msa0610580:CDS | 30.0% | |
| TAAATATGTGAAGTAGAGAG+GGG | + | chr4_2:58403930-58403949 | None:intergenic | 30.0% | |
| GAACCCAAATATCTTGTTAA+CGG | - | chr4_2:58404268-58404287 | Msa0610580:intron | 30.0% | |
| AACCCAAATATCTTGTTAAC+GGG | - | chr4_2:58404269-58404288 | Msa0610580:intron | 30.0% | |
| TACCCGTTAACAAGATATTT+GGG | + | chr4_2:58404274-58404293 | None:intergenic | 30.0% | |
| ACTGCACATTAAAAGTAGTT+AGG | - | chr4_2:58404370-58404389 | Msa0610580:intron | 30.0% | |
| !! | CGAAGTGTCTATAAAACTTT+TGG | - | chr4_2:58404525-58404544 | Msa0610580:intron | 30.0% |
| GTACCTATGACTTTCTTATT+TGG | - | chr4_2:58404746-58404765 | Msa0610580:intron | 30.0% | |
| TTATTTGGGTCCATTTGAAA+TGG | - | chr4_2:58404761-58404780 | Msa0610580:intron | 30.0% | |
| CAAGAAATGTCCATTTCAAA+TGG | + | chr4_2:58404774-58404793 | None:intergenic | 30.0% | |
| ! | CATTTGAAATGGACATTTCT+TGG | - | chr4_2:58404772-58404791 | Msa0610580:intron | 30.0% |
| ! | GGTATTTACCACTTTGTTTA+AGG | + | chr4_2:58405304-58405323 | None:intergenic | 30.0% |
| CCGAATTCAAACTTGTATTA+AGG | - | chr4_2:58405355-58405374 | Msa0610580:intron | 30.0% | |
| TCATTTCGATAATAAGTGTG+AGG | - | chr4_2:58405442-58405461 | Msa0610580:intron | 30.0% | |
| ! | GTGGAACCAAATTTTAGATA+AGG | + | chr4_2:58405578-58405597 | None:intergenic | 30.0% |
| AGAATTCTCTTGAAAGAAGA+GGG | + | chr4_2:58405838-58405857 | None:intergenic | 30.0% | |
| AAGAATTCTCTTGAAAGAAG+AGG | + | chr4_2:58405839-58405858 | None:intergenic | 30.0% | |
| TTCTTTCAAGAGAATTCTTG+TGG | - | chr4_2:58405840-58405859 | Msa0610580:intron | 30.0% | |
| !! | TTTCACTTTGGAATAGAACT+TGG | + | chr4_2:58405931-58405950 | None:intergenic | 30.0% |
| TGAAGAAAAAACCCATCATT+TGG | + | chr4_2:58406108-58406127 | None:intergenic | 30.0% | |
| !!! | AATGATGGGTTTTTTCTTCA+TGG | - | chr4_2:58406108-58406127 | Msa0610580:CDS | 30.0% |
| !!! | CAGTGTCATTTTTTGCTTTA+GGG | - | chr4_2:58406131-58406150 | Msa0610580:CDS | 30.0% |
| ! | GTTATCATGATTTTCTCCTT+TGG | + | chr4_2:58406179-58406198 | None:intergenic | 30.0% |
| GGAGAAAATCATGATAACAA+AGG | - | chr4_2:58406181-58406200 | Msa0610580:CDS | 30.0% | |
| ! | GCTTTCTTCTTTGCAAATTT+TGG | - | chr4_2:58406226-58406245 | Msa0610580:CDS | 30.0% |
| !!! | TGTTACTTACTTTTTCACCA+AGG | - | chr4_2:58406471-58406490 | Msa0610580:CDS | 30.0% |
| ! | AAGATCTTTGGAAGAAAATG+AGG | - | chr4_2:58406504-58406523 | Msa0610580:CDS | 30.0% |
| ! | AAACAAAAATGTTAGCCTAG+TGG | - | chr4_2:58406635-58406654 | Msa0610580:CDS | 30.0% |
| ! | AACAAAAATGTTAGCCTAGT+GGG | - | chr4_2:58406636-58406655 | Msa0610580:CDS | 30.0% |
| !! | TTGTGTTTTTGCTGAGTCAA+GGG | + | chr4_2:58403246-58403265 | None:intergenic | 35.0% |
| !! | ATTGTGTTTTTGCTGAGTCA+AGG | + | chr4_2:58403247-58403266 | None:intergenic | 35.0% |
| ! | AGCTCTCTTTGTTGTACATA+TGG | + | chr4_2:58403561-58403580 | None:intergenic | 35.0% |
| ! | GCTTGTGTTTTACTATCTCT+TGG | - | chr4_2:58403578-58403597 | Msa0610580:CDS | 35.0% |
| TTTAGATTCTTCTTAGGGCT+TGG | - | chr4_2:58403605-58403624 | Msa0610580:CDS | 35.0% | |
| !!! | GTTTTTTCTATGCAAGGGTT+TGG | - | chr4_2:58403710-58403729 | Msa0610580:CDS | 35.0% |
| ! | TATGCAAGGGTTTGGTATAT+TGG | - | chr4_2:58403718-58403737 | Msa0610580:CDS | 35.0% |
| !! | TGGAGGTTGATATTGATGAT+TGG | - | chr4_2:58403836-58403855 | Msa0610580:CDS | 35.0% |
| CAATAATAAGTCAATGCAGC+TGG | + | chr4_2:58403869-58403888 | None:intergenic | 35.0% | |
| !! | CAGCTGCATTGACTTATTAT+TGG | - | chr4_2:58403867-58403886 | Msa0610580:CDS | 35.0% |
| !! | CGATAGTGGAAAACAAATGT+AGG | + | chr4_2:58404249-58404268 | None:intergenic | 35.0% |
| ! | AAGATATTTGGGTTCGATAG+TGG | + | chr4_2:58404263-58404282 | None:intergenic | 35.0% |
| GTACCCGTTAACAAGATATT+TGG | + | chr4_2:58404275-58404294 | None:intergenic | 35.0% | |
| GACCCAAATAAGAAAGTCAT+AGG | + | chr4_2:58404752-58404771 | None:intergenic | 35.0% | |
| ATTAAATTCCTTGCGTCATG+TGG | - | chr4_2:58405036-58405055 | Msa0610580:intron | 35.0% | |
| ! | AATTTAAAGGTGTGGAAGTG+AGG | - | chr4_2:58405185-58405204 | Msa0610580:intron | 35.0% |
| ACATTATCTTGTTACTAGGG+AGG | - | chr4_2:58405252-58405271 | Msa0610580:intron | 35.0% | |
| TCGACATTATCAGTTGTGTT+AGG | - | chr4_2:58405395-58405414 | Msa0610580:intron | 35.0% | |
| CACGAAAAAATGCATGATGA+AGG | + | chr4_2:58405535-58405554 | None:intergenic | 35.0% | |
| TACTATTATGTTCGGCTAAG+TGG | + | chr4_2:58405597-58405616 | None:intergenic | 35.0% | |
| CATTAGGTATACAGCATTAG+TGG | - | chr4_2:58405706-58405725 | Msa0610580:intron | 35.0% | |
| ATGGATTCTCTTCGGTTATT+TGG | + | chr4_2:58405790-58405809 | None:intergenic | 35.0% | |
| ! | TTTTCGCATGTTCTGCTAAT+TGG | - | chr4_2:58405879-58405898 | Msa0610580:intron | 35.0% |
| !! | CTTCTTCATCTTTTTCGTTG+AGG | + | chr4_2:58405967-58405986 | None:intergenic | 35.0% |
| !!! | GCAGTGTCATTTTTTGCTTT+AGG | - | chr4_2:58406130-58406149 | Msa0610580:CDS | 35.0% |
| TTGGTCCAATGAGAGTAATA+GGG | + | chr4_2:58406160-58406179 | None:intergenic | 35.0% | |
| TTTGGTCCAATGAGAGTAAT+AGG | + | chr4_2:58406161-58406180 | None:intergenic | 35.0% | |
| TATTACTCTCATTGGACCAA+AGG | - | chr4_2:58406160-58406179 | Msa0610580:CDS | 35.0% | |
| TCATGATAACAAAGGGTTCA+TGG | - | chr4_2:58406189-58406208 | Msa0610580:CDS | 35.0% | |
| AAAGGGTTCATGGTTATCTA+TGG | - | chr4_2:58406199-58406218 | Msa0610580:CDS | 35.0% | |
| ! | ACAATAAAGGTGGTAGTGTT+AGG | + | chr4_2:58406253-58406272 | None:intergenic | 35.0% |
| TCAACATGTCATGGTATTTC+TGG | - | chr4_2:58406304-58406323 | Msa0610580:CDS | 35.0% | |
| CAACATGTCATGGTATTTCT+GGG | - | chr4_2:58406305-58406324 | Msa0610580:CDS | 35.0% | |
| ! | AACATGTCATGGTATTTCTG+GGG | - | chr4_2:58406306-58406325 | Msa0610580:CDS | 35.0% |
| TTGGATCTGTAGGATTTCTT+TGG | - | chr4_2:58406353-58406372 | Msa0610580:CDS | 35.0% | |
| TGGATCTGTAGGATTTCTTT+GGG | - | chr4_2:58406354-58406373 | Msa0610580:CDS | 35.0% | |
| AAAGCCTCACTTATCATACT+TGG | - | chr4_2:58406424-58406443 | Msa0610580:CDS | 35.0% | |
| ! | TTTTTCACCAAGGAAACCAT+GGG | - | chr4_2:58406481-58406500 | Msa0610580:CDS | 35.0% |
| !!! | ACAAGTAGTTTTTTCCCACT+AGG | + | chr4_2:58406653-58406672 | None:intergenic | 35.0% |
| !! | CTATGATGATGGCCTTGAAA+TGG | + | chr4_2:58403274-58403293 | None:intergenic | 40.0% |
| CATCTTTGTGATGAGTGTGA+TGG | + | chr4_2:58403336-58403355 | None:intergenic | 40.0% | |
| ACACTCATCACAAAGATGCT+AGG | - | chr4_2:58403338-58403357 | Msa0610580:exon | 40.0% | |
| TTCTTCTTAGGGCTTGGAAT+TGG | - | chr4_2:58403611-58403630 | Msa0610580:CDS | 40.0% | |
| AAGAGGTTCTTTCATAGCTG+CGG | - | chr4_2:58403688-58403707 | Msa0610580:CDS | 40.0% | |
| !!! | CTGCGGTTTTTTCTATGCAA+GGG | - | chr4_2:58403705-58403724 | Msa0610580:CDS | 40.0% |
| TAGTGCAACTGTTACTATGG+TGG | - | chr4_2:58403742-58403761 | Msa0610580:CDS | 40.0% | |
| !! | TGTTACTATGGTGGTTTGCT+TGG | - | chr4_2:58403751-58403770 | Msa0610580:CDS | 40.0% |
| CTGGCAAAAGATGAGAAAAC+TGG | - | chr4_2:58404837-58404856 | Msa0610580:intron | 40.0% | |
| AACTTAAACCACATGACGCA+AGG | + | chr4_2:58405047-58405066 | None:intergenic | 40.0% | |
| !! | TGGTGGTAATGGATTCTCTT+CGG | + | chr4_2:58405798-58405817 | None:intergenic | 40.0% |
| TTCTCTTGAAAGAAGAGGGT+AGG | + | chr4_2:58405834-58405853 | None:intergenic | 40.0% | |
| TGAAGAAGATGTGTACCAAG+AGG | - | chr4_2:58405979-58405998 | Msa0610580:intron | 40.0% | |
| GGTTTCCCTATTACTCTCAT+TGG | - | chr4_2:58406152-58406171 | Msa0610580:CDS | 40.0% | |
| TTGGGCATCACATAAAGAGA+AGG | - | chr4_2:58406372-58406391 | Msa0610580:CDS | 40.0% | |
| TCACATAAAGAGAAGGAGGA+AGG | - | chr4_2:58406379-58406398 | Msa0610580:CDS | 40.0% | |
| AAGGAGGAAGGATATCCTAA+GGG | - | chr4_2:58406391-58406410 | Msa0610580:CDS | 40.0% | |
| CCTCACTTATCATACTTGGA+GGG | - | chr4_2:58406428-58406447 | Msa0610580:CDS | 40.0% | |
| CTCACTTATCATACTTGGAG+GGG | - | chr4_2:58406429-58406448 | Msa0610580:CDS | 40.0% | |
| !! | CTTTTTCACCAAGGAAACCA+TGG | - | chr4_2:58406480-58406499 | Msa0610580:CDS | 40.0% |
| TTCTTCCAAAGATCTTCCCA+TGG | + | chr4_2:58406500-58406519 | None:intergenic | 40.0% | |
| TTCAAGGCCATCATCATAGC+AGG | - | chr4_2:58403275-58403294 | Msa0610580:three_prime_UTR | 45.0% | |
| GCCATCATCATAGCAGGAAT+GGG | - | chr4_2:58403281-58403300 | Msa0610580:three_prime_UTR | 45.0% | |
| TCCCATTCCTGCTATGATGA+TGG | + | chr4_2:58403285-58403304 | None:intergenic | 45.0% | |
| ! | TGATGAGTGTGATGGAGAAG+AGG | + | chr4_2:58403328-58403347 | None:intergenic | 45.0% |
| !! | TTGACGGATTTCTTGGTGGT+CGG | + | chr4_2:58403378-58403397 | None:intergenic | 45.0% |
| !! | TGACTTGACGGATTTCTTGG+TGG | + | chr4_2:58403382-58403401 | None:intergenic | 45.0% |
| !! | GGTTGACTTGACGGATTTCT+TGG | + | chr4_2:58403385-58403404 | None:intergenic | 45.0% |
| ! | CTAACAAGCTCTCTAGCTTC+TGG | - | chr4_2:58403530-58403549 | Msa0610580:CDS | 45.0% |
| TTCTTAGGGCTTGGAATTGG+TGG | - | chr4_2:58403614-58403633 | Msa0610580:CDS | 45.0% | |
| !!! | GCTGCGGTTTTTTCTATGCA+AGG | - | chr4_2:58403704-58403723 | Msa0610580:CDS | 45.0% |
| GGCTAGTGCAACTGTTACTA+TGG | - | chr4_2:58403739-58403758 | Msa0610580:CDS | 45.0% | |
| GTTTGCTTGGTATTTCGCAG+CGG | - | chr4_2:58403764-58403783 | Msa0610580:CDS | 45.0% | |
| AGAAACTACCTGGCAGTTTC+TGG | + | chr4_2:58403905-58403924 | None:intergenic | 45.0% | |
| TCATCGATCAGTCCTTGTCT+TGG | - | chr4_2:58404916-58404935 | Msa0610580:intron | 45.0% | |
| CATCGATCAGTCCTTGTCTT+GGG | - | chr4_2:58404917-58404936 | Msa0610580:intron | 45.0% | |
| TTACTTGAAGGCCCAAGACA+AGG | + | chr4_2:58404931-58404950 | None:intergenic | 45.0% | |
| ATAGAAAGGAACCATCCACG+TGG | - | chr4_2:58404996-58405015 | Msa0610580:intron | 45.0% | |
| ACAAAGCAAATCCACGTGGA+TGG | + | chr4_2:58405010-58405029 | None:intergenic | 45.0% | |
| GCAAACAAAGCAAATCCACG+TGG | + | chr4_2:58405014-58405033 | None:intergenic | 45.0% | |
| CGTACTATGGTGTGTGCATT+AGG | - | chr4_2:58405690-58405709 | Msa0610580:intron | 45.0% | |
| GTTGCAAGCTGCAAAAGACA+TGG | - | chr4_2:58405739-58405758 | Msa0610580:intron | 45.0% | |
| !! | GCATTTGTGGTTGGTGGTAA+TGG | + | chr4_2:58405809-58405828 | None:intergenic | 45.0% |
| AGAGAATTCTTGTGGCGACA+TGG | - | chr4_2:58405848-58405867 | Msa0610580:intron | 45.0% | |
| TTGCAAGATGGAAAGCCTCT+TGG | + | chr4_2:58405997-58406016 | None:intergenic | 45.0% | |
| ! | TGGCTTGGATTCTTGCAAGA+TGG | + | chr4_2:58406009-58406028 | None:intergenic | 45.0% |
| AGCAAACAGCAAGAATGGCT+TGG | + | chr4_2:58406024-58406043 | None:intergenic | 45.0% | |
| GGTAGAGCAAACAGCAAGAA+TGG | + | chr4_2:58406029-58406048 | None:intergenic | 45.0% | |
| TACGCGATCGATGAAGTAGA+CGG | + | chr4_2:58406071-58406090 | None:intergenic | 45.0% | |
| TTCAGCTGGGACAATAAAGG+TGG | + | chr4_2:58406263-58406282 | None:intergenic | 45.0% | |
| GAGTTCAGCTGGGACAATAA+AGG | + | chr4_2:58406266-58406285 | None:intergenic | 45.0% | |
| TAGCTGGAAAGAGTTCAGCT+GGG | + | chr4_2:58406276-58406295 | None:intergenic | 45.0% | |
| AACTCTTTCCAGCTAGGTTC+AGG | - | chr4_2:58406281-58406300 | Msa0610580:CDS | 45.0% | |
| AGGTTCAGGTCAACATGTCA+TGG | - | chr4_2:58406295-58406314 | Msa0610580:CDS | 45.0% | |
| !! | TATTTCTGGGGCTGTTGGTA+AGG | - | chr4_2:58406318-58406337 | Msa0610580:CDS | 45.0% |
| !! | GGTAAGGTTGGTGCAATCAT+TGG | - | chr4_2:58406334-58406353 | Msa0610580:CDS | 45.0% |
| GGTGCAATCATTGGATCTGT+AGG | - | chr4_2:58406343-58406362 | Msa0610580:CDS | 45.0% | |
| GGCATCACATAAAGAGAAGG+AGG | - | chr4_2:58406375-58406394 | Msa0610580:CDS | 45.0% | |
| GAAGGAGGAAGGATATCCTA+AGG | - | chr4_2:58406390-58406409 | Msa0610580:CDS | 45.0% | |
| AGGAGGAAGGATATCCTAAG+GGG | - | chr4_2:58406392-58406411 | Msa0610580:CDS | 45.0% | |
| GAAGGATATCCTAAGGGGAT+TGG | - | chr4_2:58406397-58406416 | Msa0610580:CDS | 45.0% | |
| GCTTTCATTCCAATCCCCTT+AGG | + | chr4_2:58406409-58406428 | None:intergenic | 45.0% | |
| GCCTCACTTATCATACTTGG+AGG | - | chr4_2:58406427-58406446 | Msa0610580:CDS | 45.0% | |
| CCCTCCAAGTATGATAAGTG+AGG | + | chr4_2:58406431-58406450 | None:intergenic | 45.0% | |
| AGATCTTCCCATGGTTTCCT+TGG | + | chr4_2:58406491-58406510 | None:intergenic | 45.0% | |
| GGAAACCATGGGAAGATCTT+TGG | - | chr4_2:58406492-58406511 | Msa0610580:CDS | 45.0% | |
| GGCCATCATCATAGCAGGAA+TGG | - | chr4_2:58403280-58403299 | Msa0610580:three_prime_UTR | 50.0% | |
| ATAAGGCGATACCGTAGACG+TGG | + | chr4_2:58403502-58403521 | None:intergenic | 50.0% | |
| ! | TGATGATGCCAGAAACTGCC+AGG | - | chr4_2:58403894-58403913 | Msa0610580:CDS | 50.0% |
| TAGGCAGCATTTGTGGTTGG+TGG | + | chr4_2:58405815-58405834 | None:intergenic | 50.0% | |
| AAGAGGGTAGGCAGCATTTG+TGG | + | chr4_2:58405822-58405841 | None:intergenic | 50.0% | |
| GCTGTTTGCTCTACCATTCC+CGG | - | chr4_2:58406034-58406053 | Msa0610580:CDS | 50.0% | |
| TAGACGGTGAAGAAGTAGCC+GGG | + | chr4_2:58406055-58406074 | None:intergenic | 50.0% | |
| GTAGACGGTGAAGAAGTAGC+CGG | + | chr4_2:58406056-58406075 | None:intergenic | 50.0% | |
| GTCTACTTCATCGATCGCGT+AGG | - | chr4_2:58406070-58406089 | Msa0610580:CDS | 50.0% | |
| CTAGCTGGAAAGAGTTCAGC+TGG | + | chr4_2:58406277-58406296 | None:intergenic | 50.0% | |
| CAGCTGAACTCTTTCCAGCT+AGG | - | chr4_2:58406275-58406294 | Msa0610580:CDS | 50.0% | |
| CATGTTGACCTGAACCTAGC+TGG | + | chr4_2:58406292-58406311 | None:intergenic | 50.0% | |
| !! | CATGGTATTTCTGGGGCTGT+TGG | - | chr4_2:58406313-58406332 | Msa0610580:CDS | 50.0% |
| !! | CCACGACTGGGTTGACTTGA+CGG | + | chr4_2:58403394-58403413 | None:intergenic | 55.0% |
| ! | TAGGAGTGCGACGGAGACAA+GGG | + | chr4_2:58403423-58403442 | None:intergenic | 55.0% |
| GAATAGGAGTTGGCCGAAGG+CGG | + | chr4_2:58403450-58403469 | None:intergenic | 55.0% | |
| GCCTTCGGCCAACTCCTATT+CGG | - | chr4_2:58403449-58403468 | Msa0610580:CDS | 55.0% | |
| TCCGAATAGGAGTTGGCCGA+AGG | + | chr4_2:58403453-58403472 | None:intergenic | 55.0% | |
| CAACTCCTATTCGGACGCCT+CGG | - | chr4_2:58403458-58403477 | Msa0610580:CDS | 55.0% | |
| ATTTCGCAGCGGTTCGAAGC+CGG | - | chr4_2:58403775-58403794 | Msa0610580:CDS | 55.0% | |
| GGCACATCAAAAGCCGTCTC+CGG | + | chr4_2:58403797-58403816 | None:intergenic | 55.0% | |
| GAGAGGGGCAAGAAACTACC+TGG | + | chr4_2:58403915-58403934 | None:intergenic | 55.0% | |
| GGGTAGGCAGCATTTGTGGT+TGG | + | chr4_2:58405818-58405837 | None:intergenic | 55.0% | |
| GGTGAAGAAGTAGCCGGGAA+TGG | + | chr4_2:58406050-58406069 | None:intergenic | 55.0% | |
| ! | TCTGGGGCTGTTGGTAAGGT+TGG | - | chr4_2:58406322-58406341 | Msa0610580:CDS | 55.0% |
| ! | ACTTGGAGGGGTGTGCATAG+TGG | - | chr4_2:58406441-58406460 | Msa0610580:CDS | 55.0% |
| ! | CTTGGAGGGGTGTGCATAGT+GGG | - | chr4_2:58406442-58406461 | Msa0610580:CDS | 55.0% |
| CCGTCAAGTCAACCCAGTCG+TGG | - | chr4_2:58403391-58403410 | Msa0610580:CDS | 60.0% | |
| CAAGGGCTGAGACCACGACT+GGG | + | chr4_2:58403406-58403425 | None:intergenic | 60.0% | |
| ACAAGGGCTGAGACCACGAC+TGG | + | chr4_2:58403407-58403426 | None:intergenic | 60.0% | |
| ! | CTAGGAGTGCGACGGAGACA+AGG | + | chr4_2:58403424-58403443 | None:intergenic | 60.0% |
| CTTGTCTCCGTCGCACTCCT+AGG | - | chr4_2:58403422-58403441 | Msa0610580:CDS | 60.0% | |
| GCACTCCTAGGAACCGCCTT+CGG | - | chr4_2:58403434-58403453 | Msa0610580:CDS | 60.0% | |
| ! | CGAGGCGTCCGAATAGGAGT+TGG | + | chr4_2:58403460-58403479 | None:intergenic | 60.0% |
| GGACGCCTCGGAGACCTAAA+AGG | - | chr4_2:58403470-58403489 | Msa0610580:CDS | 60.0% | |
| !! | GTCGGCCTTTTAGGTCTCCG+AGG | + | chr4_2:58403478-58403497 | None:intergenic | 60.0% |
| !!! | AGACGTGGCGTCGGCCTTTT+AGG | + | chr4_2:58403487-58403506 | None:intergenic | 60.0% |
| AAAGGCCGACGCCACGTCTA+CGG | - | chr4_2:58403488-58403507 | Msa0610580:CDS | 60.0% | |
| CGATACCGTAGACGTGGCGT+CGG | + | chr4_2:58403496-58403515 | None:intergenic | 60.0% | |
| ! | GACGGCTTTTGATGTGCCGC+CGG | - | chr4_2:58403799-58403818 | Msa0610580:CDS | 60.0% |
| CTCCATGCAACGTCAGCCTC+CGG | + | chr4_2:58403821-58403840 | None:intergenic | 60.0% | |
| GTACTGCACAGCACAGCACG+CGG | + | chr4_2:58404722-58404741 | None:intergenic | 60.0% | |
| ! | GGCGGTTCCTAGGAGTGCGA+CGG | + | chr4_2:58403432-58403451 | None:intergenic | 65.0% |
| GTTGGCCGAAGGCGGTTCCT+AGG | + | chr4_2:58403442-58403461 | None:intergenic | 65.0% | |
| ! | GGTCTCCGAGGCGTCCGAAT+AGG | + | chr4_2:58403466-58403485 | None:intergenic | 65.0% |
| CAGCGGTTCGAAGCCGGAGA+CGG | - | chr4_2:58403781-58403800 | Msa0610580:CDS | 65.0% | |
| ! | GGCTTTTGATGTGCCGCCGG+AGG | - | chr4_2:58403802-58403821 | Msa0610580:CDS | 65.0% |
| CATGCAACGTCAGCCTCCGG+CGG | + | chr4_2:58403818-58403837 | None:intergenic | 65.0% | |
| CGGAGGCTGACGTTGCATGG+AGG | - | chr4_2:58403819-58403838 | Msa0610580:CDS | 65.0% | |
| CGCCGGAGGCTGACGTTGCA+TGG | - | chr4_2:58403816-58403835 | Msa0610580:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 58403215 | 58406701 | 58403215 | ID=Msa0610580;Name=Msa0610580 |
| chr4_2 | mRNA | 58403215 | 58406701 | 58403215 | ID=Msa0610580-mRNA-1;Parent=Msa0610580;Name=Msa0610580-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0.5|1|1|1|2|134|518 |
| chr4_2 | exon | 58403215 | 58404204 | 58403215 | ID=Msa0610580-mRNA-1:exon:15344;Parent=Msa0610580-mRNA-1 |
| chr4_2 | exon | 58406001 | 58406701 | 58406001 | ID=Msa0610580-mRNA-1:exon:15343;Parent=Msa0610580-mRNA-1 |
| chr4_2 | CDS | 58406001 | 58406701 | 58406001 | ID=Msa0610580-mRNA-1:cds;Parent=Msa0610580-mRNA-1 |
| chr4_2 | CDS | 58403349 | 58404204 | 58403349 | ID=Msa0610580-mRNA-1:cds;Parent=Msa0610580-mRNA-1 |
| chr4_2 | three_prime_UTR | 58403215 | 58403348 | 58403215 | ID=Msa0610580-mRNA-1:three_prime_utr;Parent=Msa0610580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
