Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693240 | XP_003607875.1 | 99.035 | 518 | 5 | 0 | 1 | 518 | 1 | 518 | 0.0 | 1061 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693240 | sp|Q9S735|PHT19_ARATH | 64.078 | 515 | 168 | 7 | 5 | 507 | 4 | 513 | 0.0 | 676 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693240 | A2Q296 | 99.035 | 518 | 5 | 0 | 1 | 518 | 1 | 518 | 0.0 | 1061 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0092970 | Msa0693240 | 0.800100 | 1.688312e-48 | -8.615850e-47 |
| Msa0608980 | Msa0693240 | 0.828382 | 9.274757e-55 | -8.615850e-47 |
| Msa0610580 | Msa0693240 | 0.999434 | 2.612666e-311 | -8.615850e-47 |
| Msa0650560 | Msa0693240 | 0.806662 | 7.378161e-50 | -8.615850e-47 |
| Msa0651170 | Msa0693240 | 0.843163 | 1.658642e-58 | -8.615850e-47 |
| Msa0662580 | Msa0693240 | 0.809730 | 1.638041e-50 | -8.615850e-47 |
| Msa0693240 | Msa0717860 | 0.824310 | 8.651100e-54 | -8.615850e-47 |
| Msa0693240 | Msa0758520 | 0.835435 | 1.681123e-56 | -8.615850e-47 |
| Msa0693240 | Msa0758570 | 0.832167 | 1.103418e-55 | -8.615850e-47 |
| Msa0693240 | Msa0838870 | 0.823717 | 1.192072e-53 | -8.615850e-47 |
| Msa0693240 | Msa1027910 | 0.839710 | 1.346120e-57 | -8.615850e-47 |
| Msa0693240 | Msa1084890 | 0.853998 | 1.649246e-61 | -8.615850e-47 |
| Msa0693240 | Msa1405500 | 0.801647 | 8.159790e-49 | -8.615850e-47 |
| Msa0185100 | Msa0693240 | 0.815246 | 1.019817e-51 | -8.615850e-47 |
| Msa0193190 | Msa0693240 | 0.813470 | 2.518534e-51 | -8.615850e-47 |
| Msa0230080 | Msa0693240 | 0.800311 | 1.529394e-48 | -8.615850e-47 |
| Msa0442690 | Msa0693240 | 0.802477 | 5.506047e-49 | -8.615850e-47 |
| Msa0472090 | Msa0693240 | 0.801652 | 8.140155e-49 | -8.615850e-47 |
| Msa0247470 | Msa0693240 | 0.817087 | 3.955632e-52 | -8.615850e-47 |
| Msa0273070 | Msa0693240 | 0.817608 | 3.018717e-52 | -8.615850e-47 |
| Msa0324840 | Msa0693240 | 0.819002 | 1.459673e-52 | -8.615850e-47 |
| Msa0490110 | Msa0693240 | 0.847228 | 1.320150e-59 | -8.615850e-47 |
| Msa0578960 | Msa0693240 | 0.996576 | 2.535847e-229 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693240 | MtrunA17_Chr4g0043571 | 99.035 | 518 | 5 | 0 | 1 | 518 | 1 | 518 | 0.0 | 1061 |
| Msa0693240 | MtrunA17_Chr1g0186821 | 54.887 | 532 | 216 | 10 | 1 | 513 | 1 | 527 | 0.0 | 545 |
| Msa0693240 | MtrunA17_Chr1g0167741 | 54.034 | 533 | 221 | 10 | 1 | 514 | 1 | 528 | 0.0 | 537 |
| Msa0693240 | MtrunA17_Chr1g0167731 | 54.253 | 529 | 222 | 9 | 1 | 514 | 1 | 524 | 0.0 | 537 |
| Msa0693240 | MtrunA17_Chr1g0167761 | 54.221 | 533 | 220 | 10 | 1 | 514 | 1 | 528 | 0.0 | 537 |
| Msa0693240 | MtrunA17_Chr3g0120761 | 55.233 | 516 | 211 | 10 | 1 | 501 | 1 | 511 | 0.0 | 535 |
| Msa0693240 | MtrunA17_Chr1g0183921 | 52.571 | 525 | 217 | 10 | 3 | 508 | 4 | 515 | 0.0 | 528 |
| Msa0693240 | MtrunA17_Chr7g0261231 | 52.345 | 533 | 222 | 11 | 5 | 518 | 6 | 525 | 0.0 | 519 |
| Msa0693240 | MtrunA17_Chr7g0261241 | 51.769 | 537 | 213 | 12 | 5 | 510 | 6 | 527 | 1.06e-177 | 510 |
| Msa0693240 | MtrunA17_Chr1g0186831 | 52.745 | 510 | 213 | 10 | 5 | 501 | 6 | 500 | 9.23e-177 | 507 |
| Msa0693240 | MtrunA17_Chr1g0183911 | 50.662 | 529 | 225 | 12 | 1 | 507 | 1 | 515 | 4.05e-172 | 496 |
| Msa0693240 | MtrunA17_Chr1g0158991 | 49.615 | 520 | 238 | 11 | 4 | 513 | 2 | 507 | 1.51e-163 | 474 |
| Msa0693240 | MtrunA17_Chr5g0428481 | 47.905 | 549 | 236 | 13 | 1 | 514 | 1 | 534 | 3.41e-157 | 459 |
| Msa0693240 | MtrunA17_Chr6g0485661 | 24.951 | 513 | 306 | 17 | 12 | 500 | 45 | 502 | 4.77e-20 | 93.2 |
| Msa0693240 | MtrunA17_Chr7g0214451 | 22.088 | 498 | 310 | 17 | 26 | 505 | 39 | 476 | 5.05e-14 | 74.3 |
| Msa0693240 | MtrunA17_Chr3g0121674 | 24.590 | 305 | 194 | 8 | 211 | 503 | 1 | 281 | 1.66e-13 | 71.6 |
| Msa0693240 | MtrunA17_Chr4g0036021 | 21.503 | 479 | 288 | 15 | 61 | 505 | 60 | 484 | 2.60e-12 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693240 | AT1G76430.1 | 64.078 | 515 | 168 | 7 | 5 | 507 | 4 | 513 | 0.0 | 676 |
| Msa0693240 | AT1G20860.2 | 63.410 | 522 | 175 | 7 | 5 | 517 | 55 | 569 | 0.0 | 666 |
| Msa0693240 | AT1G20860.1 | 63.410 | 522 | 175 | 7 | 5 | 517 | 3 | 517 | 0.0 | 665 |
| Msa0693240 | AT5G43350.1 | 54.302 | 523 | 215 | 11 | 5 | 510 | 6 | 521 | 0.0 | 540 |
| Msa0693240 | AT5G43360.1 | 54.247 | 518 | 215 | 11 | 5 | 507 | 6 | 516 | 0.0 | 535 |
| Msa0693240 | AT2G38940.1 | 54.038 | 520 | 215 | 13 | 1 | 503 | 1 | 513 | 0.0 | 525 |
| Msa0693240 | AT3G54700.2 | 53.640 | 522 | 221 | 11 | 5 | 513 | 6 | 519 | 0.0 | 524 |
| Msa0693240 | AT3G54700.1 | 53.640 | 522 | 221 | 11 | 5 | 513 | 6 | 519 | 0.0 | 524 |
| Msa0693240 | AT5G43370.1 | 54.183 | 526 | 217 | 11 | 5 | 513 | 6 | 524 | 2.06e-179 | 514 |
| Msa0693240 | AT5G43370.2 | 54.183 | 526 | 217 | 11 | 5 | 513 | 6 | 524 | 2.06e-179 | 514 |
| Msa0693240 | AT2G32830.1 | 52.190 | 525 | 225 | 11 | 3 | 508 | 4 | 521 | 2.69e-178 | 513 |
| Msa0693240 | AT5G43340.1 | 51.758 | 512 | 222 | 10 | 6 | 507 | 8 | 504 | 3.26e-171 | 493 |
| Msa0693240 | AT4G08878.1 | 54.701 | 234 | 90 | 5 | 30 | 252 | 13 | 241 | 2.70e-72 | 231 |
| Msa0693240 | AT4G08895.1 | 42.647 | 136 | 43 | 3 | 318 | 453 | 30 | 130 | 5.46e-27 | 107 |
| Msa0693240 | AT2G43330.1 | 22.335 | 394 | 252 | 11 | 132 | 512 | 131 | 483 | 1.17e-14 | 77.0 |
| Msa0693240 | AT3G18830.1 | 23.774 | 530 | 302 | 21 | 15 | 506 | 31 | 496 | 6.57e-12 | 68.6 |
Find 140 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTTCTTCTTTGCAAATTT+TGG | 0.012899 | 4_4:-62141399 | Msa0693240:CDS |
| TCAACATGTCATGGTATTTC+TGG | 0.184785 | 4_4:-62141321 | Msa0693240:CDS |
| ATGGATTCTCTTCGGTTATT+TGG | 0.195842 | 4_4:+62141838 | None:intergenic |
| AGAAACTACCTGGCAGTTTC+TGG | 0.216451 | 4_4:+62143723 | None:intergenic |
| GGTTTCTTTAGATTCTTCTT+AGG | 0.224645 | 4_4:-62144026 | Msa0693240:CDS |
| TGTCTGAGTTTGCTAATAAA+AGG | 0.237042 | 4_4:-62143962 | Msa0693240:CDS |
| TTTGGTCCAATGAGAGTAAT+AGG | 0.245047 | 4_4:+62141467 | None:intergenic |
| TATGCAAGGGTTTGGTATAT+TGG | 0.253824 | 4_4:-62143907 | Msa0693240:CDS |
| TTGGATCTGTAGGATTTCTT+TGG | 0.269360 | 4_4:-62141272 | Msa0693240:CDS |
| CTCATAACTTTATTCAAAAC+TGG | 0.274561 | 4_4:+62140950 | None:intergenic |
| CAGCTGCATTGACTTATTAT+TGG | 0.282392 | 4_4:-62143758 | Msa0693240:CDS |
| GGTTGACTTGACGGATTTCT+TGG | 0.294025 | 4_4:+62144243 | None:intergenic |
| GCTGTTTGCTCTACCATTCC+CGG | 0.304136 | 4_4:-62141591 | Msa0693240:CDS |
| TTTAGATTCTTCTTAGGGCT+TGG | 0.319569 | 4_4:-62144020 | Msa0693240:CDS |
| TGGATCTGTAGGATTTCTTT+GGG | 0.330065 | 4_4:-62141271 | Msa0693240:CDS |
| GGCTAGTGCAACTGTTACTA+TGG | 0.333298 | 4_4:-62143886 | Msa0693240:CDS |
| GGAAACCATGGGAAGATCTT+TGG | 0.341697 | 4_4:-62141133 | Msa0693240:CDS |
| GCATTTGTGGTTGGTGGTAA+TGG | 0.351217 | 4_4:+62141819 | None:intergenic |
| AACTCTTTCCAGCTAGGTTC+AGG | 0.354273 | 4_4:-62141344 | Msa0693240:CDS |
| GTTTCTTTAGATTCTTCTTA+GGG | 0.354585 | 4_4:-62144025 | Msa0693240:CDS |
| GCTTGTTAGCATCAATAATA+AGG | 0.362995 | 4_4:+62144109 | None:intergenic |
| AGCTCTCTTTGTTGTACATA+TGG | 0.368396 | 4_4:+62144067 | None:intergenic |
| TCTGGGGCTGTTGGTAAGGT+TGG | 0.368628 | 4_4:-62141303 | Msa0693240:CDS |
| GGACGCCTCGGAGACCTAAA+AGG | 0.373921 | 4_4:-62144155 | Msa0693240:CDS |
| GGTTTCCCTATTACTCTCAT+TGG | 0.377430 | 4_4:-62141473 | Msa0693240:CDS |
| GACATAATGGTAGAAGATAA+AGG | 0.378353 | 4_4:+62143981 | None:intergenic |
| TTCTTCTTAGGGCTTGGAAT+TGG | 0.379282 | 4_4:-62144014 | Msa0693240:CDS |
| TTCTTAGGGCTTGGAATTGG+TGG | 0.382861 | 4_4:-62144011 | Msa0693240:CDS |
| ATTAGCAAACTCAGACATAA+TGG | 0.389302 | 4_4:+62143968 | None:intergenic |
| GGTCTCCGAGGCGTCCGAAT+AGG | 0.396679 | 4_4:+62144162 | None:intergenic |
| ACAATAAAGGTGGTAGTGTT+AGG | 0.397982 | 4_4:+62141375 | None:intergenic |
| TCATGATAACAAAGGGTTCA+TGG | 0.404520 | 4_4:-62141436 | Msa0693240:CDS |
| CTAACAAGCTCTCTAGCTTC+TGG | 0.406505 | 4_4:-62144095 | Msa0693240:CDS |
| CAACATGTCATGGTATTTCT+GGG | 0.410467 | 4_4:-62141320 | Msa0693240:CDS |
| AGATCTTCCCATGGTTTCCT+TGG | 0.413802 | 4_4:+62141137 | None:intergenic |
| CCACGACTGGGTTGACTTGA+CGG | 0.422761 | 4_4:+62144234 | None:intergenic |
| AAAGGGTTCATGGTTATCTA+TGG | 0.427006 | 4_4:-62141426 | Msa0693240:CDS |
| TGTTACTATGGTGGTTTGCT+TGG | 0.428921 | 4_4:-62143874 | Msa0693240:CDS |
| GGTAAGGTTGGTGCAATCAT+TGG | 0.429582 | 4_4:-62141291 | Msa0693240:CDS |
| TATTTCTGGGGCTGTTGGTA+AGG | 0.444891 | 4_4:-62141307 | Msa0693240:CDS |
| GCCTTCGGCCAACTCCTATT+CGG | 0.447789 | 4_4:-62144176 | Msa0693240:CDS |
| AAGAGTTAAAATCCAAATGA+TGG | 0.452565 | 4_4:-62141532 | Msa0693240:CDS |
| CTTGTCTCCGTCGCACTCCT+AGG | 0.457221 | 4_4:-62144203 | Msa0693240:CDS |
| GTTGGCCGAAGGCGGTTCCT+AGG | 0.459158 | 4_4:+62144186 | None:intergenic |
| CGCCGGAGGCTGACGTTGCA+TGG | 0.463769 | 4_4:-62143809 | Msa0693240:CDS |
| AACACAATACTACCATTTCA+AGG | 0.465634 | 4_4:-62144366 | Msa0693240:CDS |
| TGGTGGTAATGGATTCTCTT+CGG | 0.465888 | 4_4:+62141830 | None:intergenic |
| CAGCTGAACTCTTTCCAGCT+AGG | 0.466833 | 4_4:-62141350 | Msa0693240:CDS |
| GCTTTCATTCCAATCCCCTT+AGG | 0.467608 | 4_4:+62141219 | None:intergenic |
| CTCCATGCAACGTCAGCCTC+CGG | 0.468310 | 4_4:+62143807 | None:intergenic |
| GAGTTCAGCTGGGACAATAA+AGG | 0.470332 | 4_4:+62141362 | None:intergenic |
| ATCGTTTGTATATTTCACTT+TGG | 0.472004 | 4_4:+62141685 | None:intergenic |
| CTTGGAGGGGTGTGCATAGT+GGG | 0.472095 | 4_4:-62141183 | Msa0693240:CDS |
| AAGAATTCTCTTGAAAGAAG+AGG | 0.472184 | 4_4:+62141789 | None:intergenic |
| GAAAATGGCAAGAGGATTGA+AGG | 0.478791 | 4_4:-62144414 | None:intergenic |
| CATGTTGACCTGAACCTAGC+TGG | 0.479877 | 4_4:+62141336 | None:intergenic |
| CTAGCTGGAAAGAGTTCAGC+TGG | 0.480788 | 4_4:+62141351 | None:intergenic |
| AAAGCCTCACTTATCATACT+TGG | 0.482489 | 4_4:-62141201 | Msa0693240:CDS |
| GGTAGAGCAAACAGCAAGAA+TGG | 0.483548 | 4_4:+62141599 | None:intergenic |
| CTATGATGATGGCCTTGAAA+TGG | 0.485108 | 4_4:+62144354 | None:intergenic |
| TTTCACTTTGGAATAGAACT+TGG | 0.486743 | 4_4:+62141697 | None:intergenic |
| AAGAGGGTAGGCAGCATTTG+TGG | 0.490158 | 4_4:+62141806 | None:intergenic |
| CATTAGGTATACAGCATTAG+TGG | 0.491216 | 4_4:-62141919 | Msa0693240:intron |
| TGGAGGTTGATATTGATGAT+TGG | 0.491970 | 4_4:-62143789 | Msa0693240:CDS |
| GAAGGAGGAAGGATATCCTA+AGG | 0.492281 | 4_4:-62141235 | Msa0693240:CDS |
| GAGAAAATCATGATAACAAA+GGG | 0.493974 | 4_4:-62141443 | Msa0693240:CDS |
| ACAAGGGCTGAGACCACGAC+TGG | 0.495093 | 4_4:+62144221 | None:intergenic |
| TTGCAAGATGGAAAGCCTCT+TGG | 0.498386 | 4_4:+62141631 | None:intergenic |
| GGCACATCAAAAGCCGTCTC+CGG | 0.505349 | 4_4:+62143831 | None:intergenic |
| ATTTCGCAGCGGTTCGAAGC+CGG | 0.506942 | 4_4:-62143850 | Msa0693240:CDS |
| GCCTCACTTATCATACTTGG+AGG | 0.509162 | 4_4:-62141198 | Msa0693240:CDS |
| TTGACGGATTTCTTGGTGGT+CGG | 0.509656 | 4_4:+62144250 | None:intergenic |
| CAGCGGTTCGAAGCCGGAGA+CGG | 0.512536 | 4_4:-62143844 | Msa0693240:CDS |
| TGGCTTGGATTCTTGCAAGA+TGG | 0.513731 | 4_4:+62141619 | None:intergenic |
| TTGGTCCAATGAGAGTAATA+GGG | 0.517347 | 4_4:+62141468 | None:intergenic |
| GAAGGATATCCTAAGGGGAT+TGG | 0.519052 | 4_4:-62141228 | Msa0693240:CDS |
| GCCATCATCATAGCAGGAAT+GGG | 0.519478 | 4_4:-62144344 | Msa0693240:CDS |
| ACTTGGAGGGGTGTGCATAG+TGG | 0.520704 | 4_4:-62141184 | Msa0693240:CDS |
| TCCCATTCCTGCTATGATGA+TGG | 0.520757 | 4_4:+62144343 | None:intergenic |
| AAGATCTTTGGAAGAAAATG+AGG | 0.523433 | 4_4:-62141121 | Msa0693240:CDS |
| GGCCATCATCATAGCAGGAA+TGG | 0.527722 | 4_4:-62144345 | Msa0693240:CDS |
| AGAGTTAAAATCCAAATGAT+GGG | 0.528348 | 4_4:-62141531 | Msa0693240:CDS |
| GGTGCAATCATTGGATCTGT+AGG | 0.529168 | 4_4:-62141282 | Msa0693240:CDS |
| TTCTTTCAAGAGAATTCTTG+TGG | 0.530678 | 4_4:-62141785 | Msa0693240:CDS |
| TAGGCAGCATTTGTGGTTGG+TGG | 0.531743 | 4_4:+62141813 | None:intergenic |
| AGCAAACAGCAAGAATGGCT+TGG | 0.533200 | 4_4:+62141604 | None:intergenic |
| CATGGTATTTCTGGGGCTGT+TGG | 0.533358 | 4_4:-62141312 | Msa0693240:CDS |
| TTCAAGGCCATCATCATAGC+AGG | 0.537123 | 4_4:-62144350 | Msa0693240:CDS |
| TGACTTGACGGATTTCTTGG+TGG | 0.538931 | 4_4:+62144246 | None:intergenic |
| GCACTCCTAGGAACCGCCTT+CGG | 0.541368 | 4_4:-62144191 | Msa0693240:CDS |
| TGATGATGCCAGAAACTGCC+AGG | 0.550572 | 4_4:-62143731 | Msa0693240:intron |
| CTAGGAGTGCGACGGAGACA+AGG | 0.555040 | 4_4:+62144204 | None:intergenic |
| CAATAATAAGTCAATGCAGC+TGG | 0.561487 | 4_4:+62143759 | None:intergenic |
| TTCTTCCAAAGATCTTCCCA+TGG | 0.566058 | 4_4:+62141128 | None:intergenic |
| CGAGGCGTCCGAATAGGAGT+TGG | 0.566689 | 4_4:+62144168 | None:intergenic |
| GGGTAGGCAGCATTTGTGGT+TGG | 0.568959 | 4_4:+62141810 | None:intergenic |
| TTTGCTAATAAAAGGACAAG+AGG | 0.571218 | 4_4:-62143954 | Msa0693240:CDS |
| GGAGAAAATCATGATAACAA+AGG | 0.571581 | 4_4:-62141444 | Msa0693240:CDS |
| AGAATTCTCTTGAAAGAAGA+GGG | 0.572284 | 4_4:+62141790 | None:intergenic |
| AAAGGCCGACGCCACGTCTA+CGG | 0.572932 | 4_4:-62144137 | Msa0693240:CDS |
| CCTCACTTATCATACTTGGA+GGG | 0.573294 | 4_4:-62141197 | Msa0693240:CDS |
| CAACTCCTATTCGGACGCCT+CGG | 0.577300 | 4_4:-62144167 | Msa0693240:CDS |
| AAGGAGGAAGGATATCCTAA+GGG | 0.582496 | 4_4:-62141234 | Msa0693240:CDS |
| GGTGAAGAAGTAGCCGGGAA+TGG | 0.582583 | 4_4:+62141578 | None:intergenic |
| CAAAATCAGAAAATGGCAAG+AGG | 0.585475 | 4_4:-62144422 | None:intergenic |
| TCCGAATAGGAGTTGGCCGA+AGG | 0.586471 | 4_4:+62144175 | None:intergenic |
| TAGACGGTGAAGAAGTAGCC+GGG | 0.588557 | 4_4:+62141573 | None:intergenic |
| AGAGAATTCTTGTGGCGACA+TGG | 0.588933 | 4_4:-62141777 | Msa0693240:CDS |
| TATTACTCTCATTGGACCAA+AGG | 0.589189 | 4_4:-62141465 | Msa0693240:CDS |
| ACACTCATCACAAAGATGCT+AGG | 0.592024 | 4_4:-62144287 | Msa0693240:CDS |
| TAGTGCAACTGTTACTATGG+TGG | 0.593095 | 4_4:-62143883 | Msa0693240:CDS |
| TTGGGCATCACATAAAGAGA+AGG | 0.594444 | 4_4:-62141253 | Msa0693240:CDS |
| GTAGACGGTGAAGAAGTAGC+CGG | 0.596248 | 4_4:+62141572 | None:intergenic |
| CTCACTTATCATACTTGGAG+GGG | 0.600686 | 4_4:-62141196 | Msa0693240:CDS |
| TTCTCTTGAAAGAAGAGGGT+AGG | 0.600721 | 4_4:+62141794 | None:intergenic |
| TCACATAAAGAGAAGGAGGA+AGG | 0.604798 | 4_4:-62141246 | Msa0693240:CDS |
| AGGTTCAGGTCAACATGTCA+TGG | 0.614954 | 4_4:-62141330 | Msa0693240:CDS |
| CATGCAACGTCAGCCTCCGG+CGG | 0.616211 | 4_4:+62143810 | None:intergenic |
| AAGAGGTTCTTTCATAGCTG+CGG | 0.616245 | 4_4:-62143937 | Msa0693240:CDS |
| TGATGAGTGTGATGGAGAAG+AGG | 0.617684 | 4_4:+62144300 | None:intergenic |
| CATCTTTGTGATGAGTGTGA+TGG | 0.618124 | 4_4:+62144292 | None:intergenic |
| AACATGTCATGGTATTTCTG+GGG | 0.624270 | 4_4:-62141319 | Msa0693240:CDS |
| GAATAGGAGTTGGCCGAAGG+CGG | 0.628666 | 4_4:+62144178 | None:intergenic |
| GGCATCACATAAAGAGAAGG+AGG | 0.629025 | 4_4:-62141250 | Msa0693240:CDS |
| GGCGGTTCCTAGGAGTGCGA+CGG | 0.633327 | 4_4:+62144196 | None:intergenic |
| TAGGAGTGCGACGGAGACAA+GGG | 0.636930 | 4_4:+62144205 | None:intergenic |
| CGATACCGTAGACGTGGCGT+CGG | 0.639282 | 4_4:+62144132 | None:intergenic |
| CAAGGGCTGAGACCACGACT+GGG | 0.639760 | 4_4:+62144222 | None:intergenic |
| AGGAGGAAGGATATCCTAAG+GGG | 0.642903 | 4_4:-62141233 | Msa0693240:CDS |
| TGAAGAAGATGTGTACCAAG+AGG | 0.649402 | 4_4:-62141646 | Msa0693240:CDS |
| CCGTCAAGTCAACCCAGTCG+TGG | 0.651286 | 4_4:-62144234 | Msa0693240:CDS |
| GTTGCAAGCTGCAAAAGACA+TGG | 0.660760 | 4_4:-62141886 | Msa0693240:CDS |
| TTCAGCTGGGACAATAAAGG+TGG | 0.666270 | 4_4:+62141365 | None:intergenic |
| TAGCTGGAAAGAGTTCAGCT+GGG | 0.667181 | 4_4:+62141352 | None:intergenic |
| CCCTCCAAGTATGATAAGTG+AGG | 0.670122 | 4_4:+62141197 | None:intergenic |
| TACGCGATCGATGAAGTAGA+CGG | 0.672938 | 4_4:+62141557 | None:intergenic |
| GTTTGCTTGGTATTTCGCAG+CGG | 0.690623 | 4_4:-62143861 | Msa0693240:CDS |
| CGGAGGCTGACGTTGCATGG+AGG | 0.694489 | 4_4:-62143806 | Msa0693240:CDS |
| ATAAGGCGATACCGTAGACG+TGG | 0.708896 | 4_4:+62144126 | None:intergenic |
| GTCTACTTCATCGATCGCGT+AGG | 0.713972 | 4_4:-62141555 | Msa0693240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATTAAATATAAAAAA+TGG | - | chr4_4:62141863-62141882 | Msa0693240:CDS | 0.0% |
| !!! | TAAAATTTTAAAATTTTATA+AGG | + | chr4_4:62142190-62142209 | None:intergenic | 0.0% |
| !! | TTAAAATCAAATGAAAATAA+TGG | - | chr4_4:62142530-62142549 | Msa0693240:intron | 10.0% |
| !! | ATAAAATTAAAATTCAACTA+GGG | + | chr4_4:62142620-62142639 | None:intergenic | 10.0% |
| !! | TATAAAATTAAAATTCAACT+AGG | + | chr4_4:62142621-62142640 | None:intergenic | 10.0% |
| !!! | TATAAATTTCAAAAGTACAA+TGG | + | chr4_4:62141835-62141854 | None:intergenic | 15.0% |
| !! | GTGTATGTATAAAAAAAATT+AGG | - | chr4_4:62141908-62141927 | Msa0693240:CDS | 15.0% |
| !!! | AAATGCATTATTTAAAACAA+GGG | + | chr4_4:62142401-62142420 | None:intergenic | 15.0% |
| !!! | AAAATGCATTATTTAAAACA+AGG | + | chr4_4:62142402-62142421 | None:intergenic | 15.0% |
| !! | CTAAAACATTGTTAATTAAA+TGG | + | chr4_4:62142691-62142710 | None:intergenic | 15.0% |
| !! | AATAATTAGTATAGAAAATG+CGG | - | chr4_4:62142882-62142901 | Msa0693240:intron | 15.0% |
| !!! | ATTAATTTAATTTAAAGGTG+TGG | - | chr4_4:62142908-62142927 | Msa0693240:intron | 15.0% |
| !! | AGTAAATAAATGAACAACAA+TGG | + | chr4_4:62141794-62141813 | None:intergenic | 20.0% |
| !!! | TGTTCATTTATTTACTTTTG+TGG | - | chr4_4:62141798-62141817 | Msa0693240:CDS | 20.0% |
| !!! | AAAATTCTTCAACTTTTAGT+CGG | - | chr4_4:62142227-62142246 | Msa0693240:intron | 20.0% |
| !! | ATGGTATTAATTAAATGTAC+TGG | - | chr4_4:62142549-62142568 | Msa0693240:intron | 20.0% |
| !!! | GCATTTTCTATACTAATTAT+TGG | + | chr4_4:62142883-62142902 | None:intergenic | 20.0% |
| !!! | GGCTGATTAATTTAATTTAA+AGG | - | chr4_4:62142903-62142922 | Msa0693240:intron | 20.0% |
| !! | AATAACATTATCTTGTTACT+AGG | - | chr4_4:62142979-62142998 | Msa0693240:intron | 20.0% |
| !! | ATAACATTATCTTGTTACTA+GGG | - | chr4_4:62142980-62142999 | Msa0693240:intron | 20.0% |
| !! | TTTAAGGGAAAAAAATATTG+GGG | + | chr4_4:62143019-62143038 | None:intergenic | 20.0% |
| !! | GTTTAAGGGAAAAAAATATT+GGG | + | chr4_4:62143020-62143039 | None:intergenic | 20.0% |
| !! | TGTTTAAGGGAAAAAAATAT+TGG | + | chr4_4:62143021-62143040 | None:intergenic | 20.0% |
| !!! | TTCAGTTGATCATTTATTTT+TGG | - | chr4_4:62143230-62143249 | Msa0693240:intron | 20.0% |
| !!! | TCAAAACCTTATCTAAAATT+TGG | - | chr4_4:62143300-62143319 | Msa0693240:intron | 20.0% |
| !!! | AATTGAAGTACTATTATGTT+CGG | + | chr4_4:62143336-62143355 | None:intergenic | 20.0% |
| ! | GTTTCTTTAGATTCTTCTTA+GGG | - | chr4_4:62141331-62141350 | Msa0693240:CDS | 25.0% |
| ! | ATAAATATGTGAAGTAGAGA+GGG | + | chr4_4:62141662-62141681 | None:intergenic | 25.0% |
| ! | TATAAATATGTGAAGTAGAG+AGG | + | chr4_4:62141663-62141682 | None:intergenic | 25.0% |
| ! | GAATAAAAAAAGTGAACACT+AGG | + | chr4_4:62141937-62141956 | None:intergenic | 25.0% |
| ! | AAAATATACTGATGTCTTCA+TGG | + | chr4_4:62142289-62142308 | None:intergenic | 25.0% |
| ! | AAATAAGAAAGTCATAGGTA+CGG | + | chr4_4:62142478-62142497 | None:intergenic | 25.0% |
| !! | TACCTATGACTTTCTTATTT+GGG | - | chr4_4:62142478-62142497 | Msa0693240:intron | 25.0% |
| ! | AAATGGTTAAACTTACTTGA+AGG | + | chr4_4:62142674-62142693 | None:intergenic | 25.0% |
| !!! | AACAATGTTTTAGTCAAAGA+AGG | - | chr4_4:62142698-62142717 | Msa0693240:intron | 25.0% |
| ! | AAAGAAGGAATAGAATAGAA+AGG | - | chr4_4:62142713-62142732 | Msa0693240:intron | 25.0% |
| ! | TTATATATTGAGTGATCGAT+TGG | - | chr4_4:62142804-62142823 | Msa0693240:intron | 25.0% |
| ! | AATTATTGGCATTCTCTTAT+TGG | + | chr4_4:62142869-62142888 | None:intergenic | 25.0% |
| !!! | TTTTTTTCCCTTAAACAAAG+TGG | - | chr4_4:62143024-62143043 | Msa0693240:intron | 25.0% |
| !! | GTATTTACCACTTTGTTTAA+GGG | + | chr4_4:62143034-62143053 | None:intergenic | 25.0% |
| !!! | ATGTATGTGTGAGTTTTAAA+CGG | + | chr4_4:62143056-62143075 | None:intergenic | 25.0% |
| ! | CCTTAATACAAGTTTGAATT+CGG | + | chr4_4:62143089-62143108 | None:intergenic | 25.0% |
| ! | CACTTATTATCGAAATGAAT+TGG | + | chr4_4:62143171-62143190 | None:intergenic | 25.0% |
| ! | TAAATTAACATCGACAAAGT+TGG | + | chr4_4:62143200-62143219 | None:intergenic | 25.0% |
| !!! | AGTTGATCATTTATTTTTGG+TGG | - | chr4_4:62143233-62143252 | Msa0693240:intron | 25.0% |
| !! | CATTGCATTTTTAATGTTCA+TGG | - | chr4_4:62143377-62143396 | Msa0693240:intron | 25.0% |
| ! | AACAATTGAATAACGTACTA+TGG | - | chr4_4:62143408-62143427 | Msa0693240:intron | 25.0% |
| ! | ATCGTTTGTATATTTCACTT+TGG | + | chr4_4:62143674-62143693 | None:intergenic | 25.0% |
| ! | AAGAGTTAAAATCCAAATGA+TGG | - | chr4_4:62143824-62143843 | Msa0693240:CDS | 25.0% |
| ! | AGAGTTAAAATCCAAATGAT+GGG | - | chr4_4:62143825-62143844 | Msa0693240:CDS | 25.0% |
| ! | GAGAAAATCATGATAACAAA+GGG | - | chr4_4:62143913-62143932 | Msa0693240:CDS | 25.0% |
| ! | CTCATAACTTTATTCAAAAC+TGG | + | chr4_4:62144409-62144428 | None:intergenic | 25.0% |
| AACACAATACTACCATTTCA+AGG | - | chr4_4:62140990-62141009 | Msa0693240:three_prime_UTR | 30.0% | |
| ! | GCTTGTTAGCATCAATAATA+AGG | + | chr4_4:62141250-62141269 | None:intergenic | 30.0% |
| GGTTTCTTTAGATTCTTCTT+AGG | - | chr4_4:62141330-62141349 | Msa0693240:CDS | 30.0% | |
| GACATAATGGTAGAAGATAA+AGG | + | chr4_4:62141378-62141397 | None:intergenic | 30.0% | |
| ATTAGCAAACTCAGACATAA+TGG | + | chr4_4:62141391-62141410 | None:intergenic | 30.0% | |
| !! | TGTCTGAGTTTGCTAATAAA+AGG | - | chr4_4:62141394-62141413 | Msa0693240:CDS | 30.0% |
| TTTGCTAATAAAAGGACAAG+AGG | - | chr4_4:62141402-62141421 | Msa0693240:CDS | 30.0% | |
| TAAATATGTGAAGTAGAGAG+GGG | + | chr4_4:62141661-62141680 | None:intergenic | 30.0% | |
| GAACCCAAATATCTTGTTAA+CGG | - | chr4_4:62141999-62142018 | Msa0693240:intron | 30.0% | |
| AACCCAAATATCTTGTTAAC+GGG | - | chr4_4:62142000-62142019 | Msa0693240:intron | 30.0% | |
| TACCCGTTAACAAGATATTT+GGG | + | chr4_4:62142005-62142024 | None:intergenic | 30.0% | |
| ACTGCACATTAAAAGTAGTT+AGG | - | chr4_4:62142101-62142120 | Msa0693240:intron | 30.0% | |
| !! | CGAAGTGTCTATAAAACTTT+TGG | - | chr4_4:62142256-62142275 | Msa0693240:intron | 30.0% |
| GTACCTATGACTTTCTTATT+TGG | - | chr4_4:62142477-62142496 | Msa0693240:intron | 30.0% | |
| TTATTTGGGTCCATTTGAAA+TGG | - | chr4_4:62142492-62142511 | Msa0693240:intron | 30.0% | |
| CAAGAAATGTCCATTTCAAA+TGG | + | chr4_4:62142505-62142524 | None:intergenic | 30.0% | |
| ! | CATTTGAAATGGACATTTCT+TGG | - | chr4_4:62142503-62142522 | Msa0693240:intron | 30.0% |
| ! | GGTATTTACCACTTTGTTTA+AGG | + | chr4_4:62143035-62143054 | None:intergenic | 30.0% |
| CCGAATTCAAACTTGTATTA+AGG | - | chr4_4:62143086-62143105 | Msa0693240:intron | 30.0% | |
| TCATTTCGATAATAAGTGTG+AGG | - | chr4_4:62143173-62143192 | Msa0693240:intron | 30.0% | |
| ! | GTGGAACCAAATTTTAGATA+AGG | + | chr4_4:62143309-62143328 | None:intergenic | 30.0% |
| AGAATTCTCTTGAAAGAAGA+GGG | + | chr4_4:62143569-62143588 | None:intergenic | 30.0% | |
| AAGAATTCTCTTGAAAGAAG+AGG | + | chr4_4:62143570-62143589 | None:intergenic | 30.0% | |
| TTCTTTCAAGAGAATTCTTG+TGG | - | chr4_4:62143571-62143590 | Msa0693240:intron | 30.0% | |
| !! | TTTCACTTTGGAATAGAACT+TGG | + | chr4_4:62143662-62143681 | None:intergenic | 30.0% |
| TGAAGAAAAAACCCATCATT+TGG | + | chr4_4:62143839-62143858 | None:intergenic | 30.0% | |
| !!! | AATGATGGGTTTTTTCTTCA+TGG | - | chr4_4:62143839-62143858 | Msa0693240:CDS | 30.0% |
| !!! | CAGTGTCATTTTTTGCTTTA+GGG | - | chr4_4:62143862-62143881 | Msa0693240:CDS | 30.0% |
| ! | GTTATCATGATTTTCTCCTT+TGG | + | chr4_4:62143910-62143929 | None:intergenic | 30.0% |
| GGAGAAAATCATGATAACAA+AGG | - | chr4_4:62143912-62143931 | Msa0693240:CDS | 30.0% | |
| ! | GCTTTCTTCTTTGCAAATTT+TGG | - | chr4_4:62143957-62143976 | Msa0693240:CDS | 30.0% |
| !!! | TGTTACTTACTTTTTCACCA+AGG | - | chr4_4:62144202-62144221 | Msa0693240:CDS | 30.0% |
| ! | AAGATCTTTGGAAGAAAATG+AGG | - | chr4_4:62144235-62144254 | Msa0693240:CDS | 30.0% |
| ! | AAACAAAAATGTTAGCCTAG+TGG | - | chr4_4:62144366-62144385 | Msa0693240:CDS | 30.0% |
| ! | AACAAAAATGTTAGCCTAGT+GGG | - | chr4_4:62144367-62144386 | Msa0693240:CDS | 30.0% |
| !! | TTGTGTTTTTGCTGAGTCAA+GGG | + | chr4_4:62140977-62140996 | None:intergenic | 35.0% |
| !! | ATTGTGTTTTTGCTGAGTCA+AGG | + | chr4_4:62140978-62140997 | None:intergenic | 35.0% |
| ! | AGCTCTCTTTGTTGTACATA+TGG | + | chr4_4:62141292-62141311 | None:intergenic | 35.0% |
| ! | GCTTGTGTTTTACTATCTCT+TGG | - | chr4_4:62141309-62141328 | Msa0693240:CDS | 35.0% |
| TTTAGATTCTTCTTAGGGCT+TGG | - | chr4_4:62141336-62141355 | Msa0693240:CDS | 35.0% | |
| !!! | GTTTTTTCTATGCAAGGGTT+TGG | - | chr4_4:62141441-62141460 | Msa0693240:CDS | 35.0% |
| ! | TATGCAAGGGTTTGGTATAT+TGG | - | chr4_4:62141449-62141468 | Msa0693240:CDS | 35.0% |
| !! | TGGAGGTTGATATTGATGAT+TGG | - | chr4_4:62141567-62141586 | Msa0693240:CDS | 35.0% |
| CAATAATAAGTCAATGCAGC+TGG | + | chr4_4:62141600-62141619 | None:intergenic | 35.0% | |
| !! | CAGCTGCATTGACTTATTAT+TGG | - | chr4_4:62141598-62141617 | Msa0693240:CDS | 35.0% |
| !! | CGATAGTGGAAAACAAATGT+AGG | + | chr4_4:62141980-62141999 | None:intergenic | 35.0% |
| ! | AAGATATTTGGGTTCGATAG+TGG | + | chr4_4:62141994-62142013 | None:intergenic | 35.0% |
| GTACCCGTTAACAAGATATT+TGG | + | chr4_4:62142006-62142025 | None:intergenic | 35.0% | |
| GACCCAAATAAGAAAGTCAT+AGG | + | chr4_4:62142483-62142502 | None:intergenic | 35.0% | |
| ATTAAATTCCTTGCGTCATG+TGG | - | chr4_4:62142767-62142786 | Msa0693240:intron | 35.0% | |
| ! | AATTTAAAGGTGTGGAAGTG+AGG | - | chr4_4:62142916-62142935 | Msa0693240:intron | 35.0% |
| ACATTATCTTGTTACTAGGG+AGG | - | chr4_4:62142983-62143002 | Msa0693240:intron | 35.0% | |
| TCGACATTATCAGTTGTGTT+AGG | - | chr4_4:62143126-62143145 | Msa0693240:intron | 35.0% | |
| CACGAAAAAATGCATGATGA+AGG | + | chr4_4:62143266-62143285 | None:intergenic | 35.0% | |
| TACTATTATGTTCGGCTAAG+TGG | + | chr4_4:62143328-62143347 | None:intergenic | 35.0% | |
| CATTAGGTATACAGCATTAG+TGG | - | chr4_4:62143437-62143456 | Msa0693240:intron | 35.0% | |
| ATGGATTCTCTTCGGTTATT+TGG | + | chr4_4:62143521-62143540 | None:intergenic | 35.0% | |
| ! | TTTTCGCATGTTCTGCTAAT+TGG | - | chr4_4:62143610-62143629 | Msa0693240:intron | 35.0% |
| !! | CTTCTTCATCTTTTTCGTTG+AGG | + | chr4_4:62143698-62143717 | None:intergenic | 35.0% |
| !!! | GCAGTGTCATTTTTTGCTTT+AGG | - | chr4_4:62143861-62143880 | Msa0693240:CDS | 35.0% |
| TTGGTCCAATGAGAGTAATA+GGG | + | chr4_4:62143891-62143910 | None:intergenic | 35.0% | |
| TTTGGTCCAATGAGAGTAAT+AGG | + | chr4_4:62143892-62143911 | None:intergenic | 35.0% | |
| TATTACTCTCATTGGACCAA+AGG | - | chr4_4:62143891-62143910 | Msa0693240:CDS | 35.0% | |
| TCATGATAACAAAGGGTTCA+TGG | - | chr4_4:62143920-62143939 | Msa0693240:CDS | 35.0% | |
| AAAGGGTTCATGGTTATCTA+TGG | - | chr4_4:62143930-62143949 | Msa0693240:CDS | 35.0% | |
| ! | ACAATAAAGGTGGTAGTGTT+AGG | + | chr4_4:62143984-62144003 | None:intergenic | 35.0% |
| TCAACATGTCATGGTATTTC+TGG | - | chr4_4:62144035-62144054 | Msa0693240:CDS | 35.0% | |
| CAACATGTCATGGTATTTCT+GGG | - | chr4_4:62144036-62144055 | Msa0693240:CDS | 35.0% | |
| ! | AACATGTCATGGTATTTCTG+GGG | - | chr4_4:62144037-62144056 | Msa0693240:CDS | 35.0% |
| TTGGATCTGTAGGATTTCTT+TGG | - | chr4_4:62144084-62144103 | Msa0693240:CDS | 35.0% | |
| TGGATCTGTAGGATTTCTTT+GGG | - | chr4_4:62144085-62144104 | Msa0693240:CDS | 35.0% | |
| AAAGCCTCACTTATCATACT+TGG | - | chr4_4:62144155-62144174 | Msa0693240:CDS | 35.0% | |
| ! | TTTTTCACCAAGGAAACCAT+GGG | - | chr4_4:62144212-62144231 | Msa0693240:CDS | 35.0% |
| !!! | ACAAGTAGTTTTTTCCCACT+AGG | + | chr4_4:62144384-62144403 | None:intergenic | 35.0% |
| !! | CTATGATGATGGCCTTGAAA+TGG | + | chr4_4:62141005-62141024 | None:intergenic | 40.0% |
| CATCTTTGTGATGAGTGTGA+TGG | + | chr4_4:62141067-62141086 | None:intergenic | 40.0% | |
| ACACTCATCACAAAGATGCT+AGG | - | chr4_4:62141069-62141088 | Msa0693240:exon | 40.0% | |
| TTCTTCTTAGGGCTTGGAAT+TGG | - | chr4_4:62141342-62141361 | Msa0693240:CDS | 40.0% | |
| AAGAGGTTCTTTCATAGCTG+CGG | - | chr4_4:62141419-62141438 | Msa0693240:CDS | 40.0% | |
| !!! | CTGCGGTTTTTTCTATGCAA+GGG | - | chr4_4:62141436-62141455 | Msa0693240:CDS | 40.0% |
| TAGTGCAACTGTTACTATGG+TGG | - | chr4_4:62141473-62141492 | Msa0693240:CDS | 40.0% | |
| !! | TGTTACTATGGTGGTTTGCT+TGG | - | chr4_4:62141482-62141501 | Msa0693240:CDS | 40.0% |
| CTGGCAAAAGATGAGAAAAC+TGG | - | chr4_4:62142568-62142587 | Msa0693240:intron | 40.0% | |
| AACTTAAACCACATGACGCA+AGG | + | chr4_4:62142778-62142797 | None:intergenic | 40.0% | |
| !! | TGGTGGTAATGGATTCTCTT+CGG | + | chr4_4:62143529-62143548 | None:intergenic | 40.0% |
| TTCTCTTGAAAGAAGAGGGT+AGG | + | chr4_4:62143565-62143584 | None:intergenic | 40.0% | |
| TGAAGAAGATGTGTACCAAG+AGG | - | chr4_4:62143710-62143729 | Msa0693240:intron | 40.0% | |
| GGTTTCCCTATTACTCTCAT+TGG | - | chr4_4:62143883-62143902 | Msa0693240:CDS | 40.0% | |
| TTGGGCATCACATAAAGAGA+AGG | - | chr4_4:62144103-62144122 | Msa0693240:CDS | 40.0% | |
| TCACATAAAGAGAAGGAGGA+AGG | - | chr4_4:62144110-62144129 | Msa0693240:CDS | 40.0% | |
| AAGGAGGAAGGATATCCTAA+GGG | - | chr4_4:62144122-62144141 | Msa0693240:CDS | 40.0% | |
| CCTCACTTATCATACTTGGA+GGG | - | chr4_4:62144159-62144178 | Msa0693240:CDS | 40.0% | |
| CTCACTTATCATACTTGGAG+GGG | - | chr4_4:62144160-62144179 | Msa0693240:CDS | 40.0% | |
| !! | CTTTTTCACCAAGGAAACCA+TGG | - | chr4_4:62144211-62144230 | Msa0693240:CDS | 40.0% |
| TTCTTCCAAAGATCTTCCCA+TGG | + | chr4_4:62144231-62144250 | None:intergenic | 40.0% | |
| TTCAAGGCCATCATCATAGC+AGG | - | chr4_4:62141006-62141025 | Msa0693240:three_prime_UTR | 45.0% | |
| GCCATCATCATAGCAGGAAT+GGG | - | chr4_4:62141012-62141031 | Msa0693240:three_prime_UTR | 45.0% | |
| TCCCATTCCTGCTATGATGA+TGG | + | chr4_4:62141016-62141035 | None:intergenic | 45.0% | |
| ! | TGATGAGTGTGATGGAGAAG+AGG | + | chr4_4:62141059-62141078 | None:intergenic | 45.0% |
| !! | TTGACGGATTTCTTGGTGGT+CGG | + | chr4_4:62141109-62141128 | None:intergenic | 45.0% |
| !! | TGACTTGACGGATTTCTTGG+TGG | + | chr4_4:62141113-62141132 | None:intergenic | 45.0% |
| !! | GGTTGACTTGACGGATTTCT+TGG | + | chr4_4:62141116-62141135 | None:intergenic | 45.0% |
| ! | CTAACAAGCTCTCTAGCTTC+TGG | - | chr4_4:62141261-62141280 | Msa0693240:CDS | 45.0% |
| TTCTTAGGGCTTGGAATTGG+TGG | - | chr4_4:62141345-62141364 | Msa0693240:CDS | 45.0% | |
| !!! | GCTGCGGTTTTTTCTATGCA+AGG | - | chr4_4:62141435-62141454 | Msa0693240:CDS | 45.0% |
| GGCTAGTGCAACTGTTACTA+TGG | - | chr4_4:62141470-62141489 | Msa0693240:CDS | 45.0% | |
| GTTTGCTTGGTATTTCGCAG+CGG | - | chr4_4:62141495-62141514 | Msa0693240:CDS | 45.0% | |
| AGAAACTACCTGGCAGTTTC+TGG | + | chr4_4:62141636-62141655 | None:intergenic | 45.0% | |
| TCATCGATCAGTCCTTGTCT+TGG | - | chr4_4:62142647-62142666 | Msa0693240:intron | 45.0% | |
| CATCGATCAGTCCTTGTCTT+GGG | - | chr4_4:62142648-62142667 | Msa0693240:intron | 45.0% | |
| TTACTTGAAGGCCCAAGACA+AGG | + | chr4_4:62142662-62142681 | None:intergenic | 45.0% | |
| ATAGAAAGGAACCATCCACG+TGG | - | chr4_4:62142727-62142746 | Msa0693240:intron | 45.0% | |
| ACAAAGCAAATCCACGTGGA+TGG | + | chr4_4:62142741-62142760 | None:intergenic | 45.0% | |
| GCAAACAAAGCAAATCCACG+TGG | + | chr4_4:62142745-62142764 | None:intergenic | 45.0% | |
| CGTACTATGGTGTGTGCATT+AGG | - | chr4_4:62143421-62143440 | Msa0693240:intron | 45.0% | |
| GTTGCAAGCTGCAAAAGACA+TGG | - | chr4_4:62143470-62143489 | Msa0693240:intron | 45.0% | |
| !! | GCATTTGTGGTTGGTGGTAA+TGG | + | chr4_4:62143540-62143559 | None:intergenic | 45.0% |
| AGAGAATTCTTGTGGCGACA+TGG | - | chr4_4:62143579-62143598 | Msa0693240:intron | 45.0% | |
| TTGCAAGATGGAAAGCCTCT+TGG | + | chr4_4:62143728-62143747 | None:intergenic | 45.0% | |
| ! | TGGCTTGGATTCTTGCAAGA+TGG | + | chr4_4:62143740-62143759 | None:intergenic | 45.0% |
| AGCAAACAGCAAGAATGGCT+TGG | + | chr4_4:62143755-62143774 | None:intergenic | 45.0% | |
| GGTAGAGCAAACAGCAAGAA+TGG | + | chr4_4:62143760-62143779 | None:intergenic | 45.0% | |
| TACGCGATCGATGAAGTAGA+CGG | + | chr4_4:62143802-62143821 | None:intergenic | 45.0% | |
| TTCAGCTGGGACAATAAAGG+TGG | + | chr4_4:62143994-62144013 | None:intergenic | 45.0% | |
| GAGTTCAGCTGGGACAATAA+AGG | + | chr4_4:62143997-62144016 | None:intergenic | 45.0% | |
| TAGCTGGAAAGAGTTCAGCT+GGG | + | chr4_4:62144007-62144026 | None:intergenic | 45.0% | |
| AACTCTTTCCAGCTAGGTTC+AGG | - | chr4_4:62144012-62144031 | Msa0693240:CDS | 45.0% | |
| AGGTTCAGGTCAACATGTCA+TGG | - | chr4_4:62144026-62144045 | Msa0693240:CDS | 45.0% | |
| !! | TATTTCTGGGGCTGTTGGTA+AGG | - | chr4_4:62144049-62144068 | Msa0693240:CDS | 45.0% |
| !! | GGTAAGGTTGGTGCAATCAT+TGG | - | chr4_4:62144065-62144084 | Msa0693240:CDS | 45.0% |
| GGTGCAATCATTGGATCTGT+AGG | - | chr4_4:62144074-62144093 | Msa0693240:CDS | 45.0% | |
| GGCATCACATAAAGAGAAGG+AGG | - | chr4_4:62144106-62144125 | Msa0693240:CDS | 45.0% | |
| GAAGGAGGAAGGATATCCTA+AGG | - | chr4_4:62144121-62144140 | Msa0693240:CDS | 45.0% | |
| AGGAGGAAGGATATCCTAAG+GGG | - | chr4_4:62144123-62144142 | Msa0693240:CDS | 45.0% | |
| GAAGGATATCCTAAGGGGAT+TGG | - | chr4_4:62144128-62144147 | Msa0693240:CDS | 45.0% | |
| GCTTTCATTCCAATCCCCTT+AGG | + | chr4_4:62144140-62144159 | None:intergenic | 45.0% | |
| GCCTCACTTATCATACTTGG+AGG | - | chr4_4:62144158-62144177 | Msa0693240:CDS | 45.0% | |
| CCCTCCAAGTATGATAAGTG+AGG | + | chr4_4:62144162-62144181 | None:intergenic | 45.0% | |
| AGATCTTCCCATGGTTTCCT+TGG | + | chr4_4:62144222-62144241 | None:intergenic | 45.0% | |
| GGAAACCATGGGAAGATCTT+TGG | - | chr4_4:62144223-62144242 | Msa0693240:CDS | 45.0% | |
| GGCCATCATCATAGCAGGAA+TGG | - | chr4_4:62141011-62141030 | Msa0693240:three_prime_UTR | 50.0% | |
| ATAAGGCGATACCGTAGACG+TGG | + | chr4_4:62141233-62141252 | None:intergenic | 50.0% | |
| ! | TGATGATGCCAGAAACTGCC+AGG | - | chr4_4:62141625-62141644 | Msa0693240:CDS | 50.0% |
| TAGGCAGCATTTGTGGTTGG+TGG | + | chr4_4:62143546-62143565 | None:intergenic | 50.0% | |
| AAGAGGGTAGGCAGCATTTG+TGG | + | chr4_4:62143553-62143572 | None:intergenic | 50.0% | |
| GCTGTTTGCTCTACCATTCC+CGG | - | chr4_4:62143765-62143784 | Msa0693240:CDS | 50.0% | |
| TAGACGGTGAAGAAGTAGCC+GGG | + | chr4_4:62143786-62143805 | None:intergenic | 50.0% | |
| GTAGACGGTGAAGAAGTAGC+CGG | + | chr4_4:62143787-62143806 | None:intergenic | 50.0% | |
| GTCTACTTCATCGATCGCGT+AGG | - | chr4_4:62143801-62143820 | Msa0693240:CDS | 50.0% | |
| CTAGCTGGAAAGAGTTCAGC+TGG | + | chr4_4:62144008-62144027 | None:intergenic | 50.0% | |
| CAGCTGAACTCTTTCCAGCT+AGG | - | chr4_4:62144006-62144025 | Msa0693240:CDS | 50.0% | |
| CATGTTGACCTGAACCTAGC+TGG | + | chr4_4:62144023-62144042 | None:intergenic | 50.0% | |
| !! | CATGGTATTTCTGGGGCTGT+TGG | - | chr4_4:62144044-62144063 | Msa0693240:CDS | 50.0% |
| !! | CCACGACTGGGTTGACTTGA+CGG | + | chr4_4:62141125-62141144 | None:intergenic | 55.0% |
| ! | TAGGAGTGCGACGGAGACAA+GGG | + | chr4_4:62141154-62141173 | None:intergenic | 55.0% |
| GAATAGGAGTTGGCCGAAGG+CGG | + | chr4_4:62141181-62141200 | None:intergenic | 55.0% | |
| GCCTTCGGCCAACTCCTATT+CGG | - | chr4_4:62141180-62141199 | Msa0693240:CDS | 55.0% | |
| TCCGAATAGGAGTTGGCCGA+AGG | + | chr4_4:62141184-62141203 | None:intergenic | 55.0% | |
| CAACTCCTATTCGGACGCCT+CGG | - | chr4_4:62141189-62141208 | Msa0693240:CDS | 55.0% | |
| ATTTCGCAGCGGTTCGAAGC+CGG | - | chr4_4:62141506-62141525 | Msa0693240:CDS | 55.0% | |
| GGCACATCAAAAGCCGTCTC+CGG | + | chr4_4:62141528-62141547 | None:intergenic | 55.0% | |
| GAGAGGGGCAAGAAACTACC+TGG | + | chr4_4:62141646-62141665 | None:intergenic | 55.0% | |
| GGGTAGGCAGCATTTGTGGT+TGG | + | chr4_4:62143549-62143568 | None:intergenic | 55.0% | |
| GGTGAAGAAGTAGCCGGGAA+TGG | + | chr4_4:62143781-62143800 | None:intergenic | 55.0% | |
| ! | TCTGGGGCTGTTGGTAAGGT+TGG | - | chr4_4:62144053-62144072 | Msa0693240:CDS | 55.0% |
| ! | ACTTGGAGGGGTGTGCATAG+TGG | - | chr4_4:62144172-62144191 | Msa0693240:CDS | 55.0% |
| ! | CTTGGAGGGGTGTGCATAGT+GGG | - | chr4_4:62144173-62144192 | Msa0693240:CDS | 55.0% |
| CCGTCAAGTCAACCCAGTCG+TGG | - | chr4_4:62141122-62141141 | Msa0693240:CDS | 60.0% | |
| CAAGGGCTGAGACCACGACT+GGG | + | chr4_4:62141137-62141156 | None:intergenic | 60.0% | |
| ACAAGGGCTGAGACCACGAC+TGG | + | chr4_4:62141138-62141157 | None:intergenic | 60.0% | |
| ! | CTAGGAGTGCGACGGAGACA+AGG | + | chr4_4:62141155-62141174 | None:intergenic | 60.0% |
| CTTGTCTCCGTCGCACTCCT+AGG | - | chr4_4:62141153-62141172 | Msa0693240:CDS | 60.0% | |
| GCACTCCTAGGAACCGCCTT+CGG | - | chr4_4:62141165-62141184 | Msa0693240:CDS | 60.0% | |
| ! | CGAGGCGTCCGAATAGGAGT+TGG | + | chr4_4:62141191-62141210 | None:intergenic | 60.0% |
| GGACGCCTCGGAGACCTAAA+AGG | - | chr4_4:62141201-62141220 | Msa0693240:CDS | 60.0% | |
| !! | GTCGGCCTTTTAGGTCTCCG+AGG | + | chr4_4:62141209-62141228 | None:intergenic | 60.0% |
| !!! | AGACGTGGCGTCGGCCTTTT+AGG | + | chr4_4:62141218-62141237 | None:intergenic | 60.0% |
| AAAGGCCGACGCCACGTCTA+CGG | - | chr4_4:62141219-62141238 | Msa0693240:CDS | 60.0% | |
| CGATACCGTAGACGTGGCGT+CGG | + | chr4_4:62141227-62141246 | None:intergenic | 60.0% | |
| ! | GACGGCTTTTGATGTGCCGC+CGG | - | chr4_4:62141530-62141549 | Msa0693240:CDS | 60.0% |
| CTCCATGCAACGTCAGCCTC+CGG | + | chr4_4:62141552-62141571 | None:intergenic | 60.0% | |
| GTACTGCACAGCACAGCACG+CGG | + | chr4_4:62142453-62142472 | None:intergenic | 60.0% | |
| ! | GGCGGTTCCTAGGAGTGCGA+CGG | + | chr4_4:62141163-62141182 | None:intergenic | 65.0% |
| GTTGGCCGAAGGCGGTTCCT+AGG | + | chr4_4:62141173-62141192 | None:intergenic | 65.0% | |
| ! | GGTCTCCGAGGCGTCCGAAT+AGG | + | chr4_4:62141197-62141216 | None:intergenic | 65.0% |
| CAGCGGTTCGAAGCCGGAGA+CGG | - | chr4_4:62141512-62141531 | Msa0693240:CDS | 65.0% | |
| ! | GGCTTTTGATGTGCCGCCGG+AGG | - | chr4_4:62141533-62141552 | Msa0693240:CDS | 65.0% |
| CATGCAACGTCAGCCTCCGG+CGG | + | chr4_4:62141549-62141568 | None:intergenic | 65.0% | |
| CGGAGGCTGACGTTGCATGG+AGG | - | chr4_4:62141550-62141569 | Msa0693240:CDS | 65.0% | |
| CGCCGGAGGCTGACGTTGCA+TGG | - | chr4_4:62141547-62141566 | Msa0693240:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 62140946 | 62144432 | 62140946 | ID=Msa0693240;Name=Msa0693240 |
| chr4_4 | mRNA | 62140946 | 62144432 | 62140946 | ID=Msa0693240-mRNA-1;Parent=Msa0693240;Name=Msa0693240-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0.5|1|1|1|2|134|518 |
| chr4_4 | exon | 62140946 | 62141935 | 62140946 | ID=Msa0693240-mRNA-1:exon:17303;Parent=Msa0693240-mRNA-1 |
| chr4_4 | exon | 62143732 | 62144432 | 62143732 | ID=Msa0693240-mRNA-1:exon:17302;Parent=Msa0693240-mRNA-1 |
| chr4_4 | CDS | 62143732 | 62144432 | 62143732 | ID=Msa0693240-mRNA-1:cds;Parent=Msa0693240-mRNA-1 |
| chr4_4 | CDS | 62141080 | 62141935 | 62141080 | ID=Msa0693240-mRNA-1:cds;Parent=Msa0693240-mRNA-1 |
| chr4_4 | three_prime_UTR | 62140946 | 62141079 | 62140946 | ID=Msa0693240-mRNA-1:three_prime_utr;Parent=Msa0693240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
