Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0651440 | XP_013456831.1 | 92.308 | 546 | 35 | 3 | 1 | 539 | 1 | 546 | 0.0 | 837 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0651440 | A0A072UMI4 | 92.308 | 546 | 35 | 3 | 1 | 539 | 1 | 546 | 0.0 | 837 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0651440 | Msa0966400 | 0.822774 | 1.978858e-53 | -8.615850e-47 |
| Msa0651440 | Msa1411020 | 0.813612 | 2.344041e-51 | -8.615850e-47 |
| Msa0651440 | Msa1420490 | 0.801328 | 9.482365e-49 | -8.615850e-47 |
| Msa0651440 | Msa1423390 | 0.805585 | 1.243285e-49 | -8.615850e-47 |
| Msa0651440 | Msa1424290 | 0.815962 | 7.065636e-52 | -8.615850e-47 |
| Msa0651440 | Msa1434350 | 0.814282 | 1.668148e-51 | -8.615850e-47 |
| Msa0651440 | Msa1439320 | 0.815515 | 8.888059e-52 | -8.615850e-47 |
| Msa0651440 | Msa1440370 | 0.802421 | 5.654362e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0651440 | MtrunA17_Chr4g0044041 | 92.308 | 546 | 35 | 3 | 1 | 539 | 1 | 546 | 0.0 | 837 |
| Msa0651440 | MtrunA17_Chr7g0267611 | 48.673 | 113 | 53 | 3 | 29 | 140 | 5 | 113 | 6.05e-26 | 103 |
| Msa0651440 | MtrunA17_Chr4g0008711 | 46.903 | 113 | 57 | 3 | 30 | 140 | 1 | 112 | 3.31e-25 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0651440 | AT5G08780.1 | 32.653 | 147 | 68 | 5 | 61 | 197 | 40 | 165 | 4.15e-15 | 78.2 |
Find 176 sgRNAs with CRISPR-Local
Find 301 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAAGAGGTTGTGTGAAAC+TGG | 0.245357 | 4_3:+58817795 | Msa0651440:CDS |
| TGTAGAGAGAGGGATGAATT+TGG | 0.250723 | 4_3:+58817944 | Msa0651440:CDS |
| GGCCTTCCTCTCTTTCTCTT+TGG | 0.270119 | 4_3:-58820541 | None:intergenic |
| GGTGATGATGATTCTATTCC+TGG | 0.305283 | 4_3:-58820346 | None:intergenic |
| AGAAGGGATTGTTCTTCTTC+AGG | 0.309476 | 4_3:-58817350 | None:intergenic |
| CTCCACGGAGGAGGCGATTT+CGG | 0.317455 | 4_3:+58817710 | Msa0651440:CDS |
| TGTTCTACAATTCCCTCTTC+AGG | 0.317518 | 4_3:-58819154 | None:intergenic |
| ACAATGTGAAGAGGAATTAA+AGG | 0.320847 | 4_3:+58820705 | Msa0651440:CDS |
| TATAAATAGCAACTTAAATC+TGG | 0.335322 | 4_3:-58821108 | None:intergenic |
| ACGGAATTGAAAGACAAAAT+AGG | 0.341816 | 4_3:+58817687 | Msa0651440:CDS |
| AAATACACTTGGAAGTAGTT+TGG | 0.353541 | 4_3:+58821153 | Msa0651440:three_prime_UTR |
| ATGGTTGTGGCTTCAGCAGC+TGG | 0.368019 | 4_3:-58821041 | None:intergenic |
| AGGAAGGTGGTAAGGGTAGT+AGG | 0.372318 | 4_3:+58818975 | Msa0651440:CDS |
| TGAAGGAAGAGCGGTCGATT+AGG | 0.378334 | 4_3:-58817478 | None:intergenic |
| GAGAGTGATCATCATTCAAT+TGG | 0.384799 | 4_3:+58818005 | Msa0651440:CDS |
| GGGTTAGAGAAGGGTTGAGT+TGG | 0.395498 | 4_3:-58817448 | None:intergenic |
| TACAATGAAGGAAATACTAA+TGG | 0.397587 | 4_3:+58820466 | Msa0651440:CDS |
| GGAAGAGAAGGAAGGTGGTA+AGG | 0.398946 | 4_3:+58818967 | Msa0651440:CDS |
| GGGTGGAAGGGGTTAGAGAA+GGG | 0.414522 | 4_3:-58817457 | None:intergenic |
| CGAGGTCGCGGTCGTGGTCG+AGG | 0.415668 | 4_3:+58820970 | Msa0651440:CDS |
| AGGGTAGTAGGAAGAGGAAG+AGG | 0.416755 | 4_3:+58818987 | Msa0651440:CDS |
| GGTTAGAGAAGGGTTGAGTT+GGG | 0.420957 | 4_3:-58817447 | None:intergenic |
| GAAGGAAGAGCGGTCGATTA+GGG | 0.425168 | 4_3:-58817477 | None:intergenic |
| GTTGTTGTTGATTGCGGAAT+CGG | 0.434537 | 4_3:-58817381 | None:intergenic |
| ACTGGAAGAGACACAAATTC+AGG | 0.438243 | 4_3:+58819183 | Msa0651440:CDS |
| CCTTGAACTTCACATGGTTG+TGG | 0.448036 | 4_3:-58821054 | None:intergenic |
| GGATGAATTTGGTTAGTGTT+GGG | 0.448262 | 4_3:+58817955 | Msa0651440:CDS |
| AGCGTAAGTGTGGTAGGAAG+AGG | 0.450070 | 4_3:+58817883 | Msa0651440:CDS |
| GGTAATAGAAGGGGTAATCG+TGG | 0.452536 | 4_3:+58817915 | Msa0651440:CDS |
| CGTGAGACCGAAAACCTTTG+AGG | 0.454036 | 4_3:+58817299 | Msa0651440:five_prime_UTR |
| TTGAAGAACAGACACAAGTT+CGG | 0.455602 | 4_3:+58818033 | Msa0651440:CDS |
| GAAGAGAAGGAAGGTGGTAA+GGG | 0.456858 | 4_3:+58818968 | Msa0651440:CDS |
| CGTGGTCGAGGTCGCGGTCA+AGG | 0.458194 | 4_3:+58820874 | Msa0651440:CDS |
| ATATCACACACCTTGGCCTT+AGG | 0.458811 | 4_3:-58821000 | None:intergenic |
| GTGGTCGAGGTCGCGGTCAA+GGG | 0.460556 | 4_3:+58820875 | Msa0651440:CDS |
| AGTGAGAGTGATCGTTCAAT+TGG | 0.461186 | 4_3:+58819103 | Msa0651440:CDS |
| TTGTGTTTGTTAGATAGTGC+TGG | 0.461779 | 4_3:+58819055 | Msa0651440:CDS |
| GGGATGAATTTGGTTAGTGT+TGG | 0.471644 | 4_3:+58817954 | Msa0651440:CDS |
| GGGTAGTAGGAAGAGGAAGA+GGG | 0.473741 | 4_3:+58818988 | Msa0651440:CDS |
| GAAGCCATTGCTGCTTAAGC+GGG | 0.474812 | 4_3:+58820597 | Msa0651440:CDS |
| AATTGTAGAACATACTGAAC+TGG | 0.475619 | 4_3:+58819165 | Msa0651440:CDS |
| CACTCACCCTCCTTACGCCT+TGG | 0.475697 | 4_3:+58817544 | Msa0651440:CDS |
| AGGGTGGAAGGGGTTAGAGA+AGG | 0.478479 | 4_3:-58817458 | None:intergenic |
| GATGATAAACAAGGCAATAA+CGG | 0.480539 | 4_3:+58817668 | Msa0651440:intron |
| CCACAACCATGTGAAGTTCA+AGG | 0.481145 | 4_3:+58821054 | Msa0651440:three_prime_UTR |
| GAGGTCGCGGTCGTGGTCGA+GGG | 0.482799 | 4_3:+58820971 | Msa0651440:CDS |
| TGGTCGAGGGAGGCCTCCTA+AGG | 0.484961 | 4_3:+58820984 | Msa0651440:CDS |
| TGTGGTAGGAAGAGGAAGAG+AGG | 0.485077 | 4_3:+58817891 | Msa0651440:CDS |
| AGTCGTGGAGACGGAGGGAG+TGG | 0.485384 | 4_3:+58819025 | Msa0651440:CDS |
| AAGTTGCGTGGCTGTGGTCG+AGG | 0.485573 | 4_3:+58820952 | Msa0651440:CDS |
| CGGAATCGGTGTGAAGAAGA+AGG | 0.485922 | 4_3:-58817367 | None:intergenic |
| AGCAGCTGGTTCCTCTGCTA+TGG | 0.487094 | 4_3:-58821027 | None:intergenic |
| GTGGTAGGAAGAGGAAGAGA+GGG | 0.489978 | 4_3:+58817892 | Msa0651440:CDS |
| AGAAGCTGGTGCCTCTGCTA+TGG | 0.490222 | 4_3:-58820917 | None:intergenic |
| GAGGTTGTGTGTAATGAGAA+TGG | 0.490295 | 4_3:+58817819 | Msa0651440:CDS |
| AATTAAAGGAGTCAGAAGAA+AGG | 0.491234 | 4_3:+58820719 | Msa0651440:CDS |
| TGTGGTCGAGGTCGCGGTCG+TGG | 0.491533 | 4_3:+58820964 | Msa0651440:CDS |
| TGCATAATATCTACAGGTCC+AGG | 0.497226 | 4_3:+58820328 | Msa0651440:CDS |
| CAAGGTCGTGGTCGAGGTCG+CGG | 0.497745 | 4_3:+58820868 | Msa0651440:CDS |
| GTGGTAAGGGTAGTAGGAAG+AGG | 0.497820 | 4_3:+58818981 | Msa0651440:CDS |
| AAGAAAAGCGTAAGTGTGGT+AGG | 0.499659 | 4_3:+58817877 | Msa0651440:CDS |
| TAAGCAGCAATGGCTTCTCT+TGG | 0.500886 | 4_3:-58820591 | None:intergenic |
| CGTGGAGGAGATGTAGAGAG+AGG | 0.502567 | 4_3:+58817933 | Msa0651440:CDS |
| TTCTCTTCCTCACCATCAGC+CGG | 0.502865 | 4_3:-58818953 | None:intergenic |
| GCTATGGCATCACACACTTT+AGG | 0.503874 | 4_3:-58820901 | None:intergenic |
| TTAGCTTGATCTTCAGAAGC+TGG | 0.503880 | 4_3:-58820931 | None:intergenic |
| CAAGCTAAGTTGCGTGGCTG+TGG | 0.504173 | 4_3:+58820946 | Msa0651440:CDS |
| AGGCGTAAGGAGGGTGAGTG+GGG | 0.506965 | 4_3:-58817541 | None:intergenic |
| GGAAAGAAGAAGAAAAGTCA+AGG | 0.508078 | 4_3:+58820740 | Msa0651440:CDS |
| ATATGATGACGAGCGTCCTC+AGG | 0.508681 | 4_3:+58820441 | Msa0651440:CDS |
| TGAAGAACAGACACAAGTTC+GGG | 0.512732 | 4_3:+58818034 | Msa0651440:CDS |
| CGTGGTCAAGGTCGTGGTCG+AGG | 0.515259 | 4_3:+58820862 | Msa0651440:CDS |
| CGTGGCTGTGGTCGAGGTCG+CGG | 0.517882 | 4_3:+58820958 | Msa0651440:CDS |
| CTCTCACTGACCTGTGTCGA+AGG | 0.518222 | 4_3:-58819088 | None:intergenic |
| CCAGAGTGCATAATATCTAC+AGG | 0.518764 | 4_3:+58820322 | Msa0651440:CDS |
| GAGGATTTACCGTGGGCACA+TGG | 0.520496 | 4_3:+58817753 | Msa0651440:CDS |
| AAGGCGTAAGGAGGGTGAGT+GGG | 0.524250 | 4_3:-58817542 | None:intergenic |
| GAGAAAGAAAAGCGTAAGTG+TGG | 0.526594 | 4_3:+58817873 | Msa0651440:CDS |
| AAGTTGCGTGGTCAAGGTCG+TGG | 0.529047 | 4_3:+58820856 | Msa0651440:CDS |
| CAAGCTAAGTTGCGTGGTCA+AGG | 0.529296 | 4_3:+58820850 | Msa0651440:CDS |
| GACCATCAGAGTCAGACATT+GGG | 0.529678 | 4_3:-58820504 | None:intergenic |
| GTGCATACCAAGGCGTAAGG+AGG | 0.530586 | 4_3:-58817551 | None:intergenic |
| GACTGAAGAGCCTTCGACAC+AGG | 0.534825 | 4_3:+58819078 | Msa0651440:CDS |
| GTCGAGGTCGCGGTCAAGGG+AGG | 0.535336 | 4_3:+58820878 | Msa0651440:CDS |
| AATGGTCAAACTAGAGGTCG+AGG | 0.539978 | 4_3:+58820652 | Msa0651440:CDS |
| GCGGTCGATTAGGGTGGAAG+GGG | 0.540317 | 4_3:-58817468 | None:intergenic |
| TCAAGAGGTTGTGTGAAACT+GGG | 0.540721 | 4_3:+58817796 | Msa0651440:CDS |
| GGCTGAGTTGTTGTTGATTG+CGG | 0.540840 | 4_3:-58817387 | None:intergenic |
| AGGTTGTGTGTAATGAGAAT+GGG | 0.541428 | 4_3:+58817820 | Msa0651440:CDS |
| CCATGTGAAGTTCAAGGTAG+AGG | 0.544451 | 4_3:+58821060 | Msa0651440:three_prime_UTR |
| GGTAGTAGGAAGAGGAAGAG+GGG | 0.547007 | 4_3:+58818989 | Msa0651440:CDS |
| GTGGAGGAGATGTAGAGAGA+GGG | 0.548271 | 4_3:+58817934 | Msa0651440:CDS |
| TGGTAGGAAGAGGAAGAGAG+GGG | 0.548459 | 4_3:+58817893 | Msa0651440:CDS |
| CGTCCTCAGGACTACAATGA+AGG | 0.549124 | 4_3:+58820454 | Msa0651440:CDS |
| CAAAATAGGCTCCACGGAGG+AGG | 0.549874 | 4_3:+58817701 | Msa0651440:CDS |
| GGGGTGCATACCAAGGCGTA+AGG | 0.554641 | 4_3:-58817554 | None:intergenic |
| AGACCATCAGAGTCAGACAT+TGG | 0.555075 | 4_3:-58820505 | None:intergenic |
| TCACACACCTTGGCCTTAGG+AGG | 0.555381 | 4_3:-58820997 | None:intergenic |
| AGGTCGAGGGAGGCCTCGTA+AGG | 0.558089 | 4_3:+58820666 | Msa0651440:CDS |
| AATATCGACTGACATTGATA+CGG | 0.558289 | 4_3:+58820387 | Msa0651440:CDS |
| GATGGTGAGGAAGAGAAGGA+AGG | 0.560114 | 4_3:+58818959 | Msa0651440:CDS |
| AGGGAGGCCTCCTAAGGCCA+AGG | 0.560781 | 4_3:+58820990 | Msa0651440:CDS |
| GAGCGGTCGATTAGGGTGGA+AGG | 0.561176 | 4_3:-58817470 | None:intergenic |
| GGCTGATGGTGAGGAAGAGA+AGG | 0.561675 | 4_3:+58818955 | Msa0651440:CDS |
| GACACAAATACAACCTGAAG+AGG | 0.561834 | 4_3:+58819141 | Msa0651440:CDS |
| GCTCCCCGCTTAAGCAGCAA+TGG | 0.564948 | 4_3:-58820601 | None:intergenic |
| CAAGGCGTAAGGAGGGTGAG+TGG | 0.569476 | 4_3:-58817543 | None:intergenic |
| GGTGAGGAAGAGAAGGAAGG+TGG | 0.569819 | 4_3:+58818962 | Msa0651440:CDS |
| CCTCTACCTTGAACTTCACA+TGG | 0.571338 | 4_3:-58821060 | None:intergenic |
| GTCGCGGTCGTGGTCGAGGG+AGG | 0.573904 | 4_3:+58820974 | Msa0651440:CDS |
| ACTGCACTAGTTTGTGCGAA+TGG | 0.575058 | 4_3:+58820418 | Msa0651440:CDS |
| ATTTGATGTGGCACCTGTGT+TGG | 0.575188 | 4_3:-58820367 | None:intergenic |
| AAGAAGAAGAAGGAGCAGAA+TGG | 0.575723 | 4_3:+58820634 | Msa0651440:CDS |
| GTCTGACTCTGATGGTCTTG+AGG | 0.576545 | 4_3:+58820510 | Msa0651440:CDS |
| GTAGCGAAATTTATGCAGAA+AGG | 0.580271 | 4_3:+58820296 | Msa0651440:CDS |
| AGAGGAAGAGGGGCAACACA+AGG | 0.584115 | 4_3:+58818999 | Msa0651440:CDS |
| AGCGGTCGATTAGGGTGGAA+GGG | 0.585160 | 4_3:-58817469 | None:intergenic |
| TTTCCTTCATTGTAGTCCTG+AGG | 0.585221 | 4_3:-58820457 | None:intergenic |
| ATGCAACCAAAGAGAAAGAG+AGG | 0.585795 | 4_3:+58820535 | Msa0651440:CDS |
| TGTGTTTGTTAGATAGTGCT+GGG | 0.586318 | 4_3:+58819056 | Msa0651440:CDS |
| AGGAGTAGTCGTGGAGACGG+AGG | 0.587606 | 4_3:+58819019 | Msa0651440:CDS |
| GAGTAGAAATTAAATACACT+TGG | 0.587732 | 4_3:+58821142 | Msa0651440:three_prime_UTR |
| AACCAAAGAGAAAGAGAGGA+AGG | 0.590263 | 4_3:+58820539 | Msa0651440:CDS |
| AGAAGCCATTGCTGCTTAAG+CGG | 0.590614 | 4_3:+58820596 | Msa0651440:CDS |
| TTGAAGGCGAGATTGAATGA+AGG | 0.591874 | 4_3:-58817495 | None:intergenic |
| ATATCGACTGACATTGATAC+GGG | 0.591886 | 4_3:+58820388 | Msa0651440:CDS |
| AGATACTGAACAATGTGAAG+AGG | 0.591955 | 4_3:+58820696 | Msa0651440:CDS |
| TCGTTCAATTGGAAGTGTTG+AGG | 0.595171 | 4_3:+58819114 | Msa0651440:CDS |
| TGCATACCAAGGCGTAAGGA+GGG | 0.595429 | 4_3:-58817550 | None:intergenic |
| CCTTTGAGGTATTCTCAACA+TGG | 0.604055 | 4_3:+58817313 | Msa0651440:exon |
| AGGATTTACCGTGGGCACAT+GGG | 0.604105 | 4_3:+58817754 | Msa0651440:CDS |
| CTCCGAAATCGCCTCCTCCG+TGG | 0.604355 | 4_3:-58817712 | None:intergenic |
| CCATGTTGAGAATACCTCAA+AGG | 0.610534 | 4_3:-58817313 | None:intergenic |
| AGAATCAAGAGCAACCGCAC+AGG | 0.610968 | 4_3:-58821202 | None:intergenic |
| ACAAGGAGTAGTCGTGGAGA+CGG | 0.612539 | 4_3:+58819016 | Msa0651440:CDS |
| GTCGTGGAGACGGAGGGAGT+GGG | 0.613650 | 4_3:+58819026 | Msa0651440:CDS |
| AAAATCTTCCCATGTGCCCA+CGG | 0.616052 | 4_3:-58817762 | None:intergenic |
| GGCAACACAAGGAGTAGTCG+TGG | 0.619050 | 4_3:+58819010 | Msa0651440:CDS |
| GGTAGGAAGAGGAAGAGAGG+GGG | 0.619367 | 4_3:+58817894 | Msa0651440:CDS |
| TGTGAAGTTCAAGGTAGAGG+TGG | 0.619648 | 4_3:+58821063 | Msa0651440:three_prime_UTR |
| GGAAGAGCGGTCGATTAGGG+TGG | 0.619811 | 4_3:-58817474 | None:intergenic |
| AGAATCATCATCACCAACAC+AGG | 0.622124 | 4_3:+58820354 | Msa0651440:CDS |
| GGAGTAGTCGTGGAGACGGA+GGG | 0.622437 | 4_3:+58819020 | Msa0651440:CDS |
| GGCGTAAGGAGGGTGAGTGG+GGG | 0.625181 | 4_3:-58817540 | None:intergenic |
| GGAATCGGTGTGAAGAAGAA+GGG | 0.630426 | 4_3:-58817366 | None:intergenic |
| GTATCTTGATTTACCTTACG+AGG | 0.632699 | 4_3:-58820679 | None:intergenic |
| CCTGTAGATATTATGCACTC+TGG | 0.633026 | 4_3:-58820322 | None:intergenic |
| GAAAGACAAAATAGGCTCCA+CGG | 0.634693 | 4_3:+58817695 | Msa0651440:CDS |
| ATGTCAGTCGATATTTGATG+TGG | 0.635873 | 4_3:-58820379 | None:intergenic |
| ACACAAATACAACCTGAAGA+GGG | 0.639932 | 4_3:+58819142 | Msa0651440:CDS |
| CAAGAGGTTGTGTGAAACTG+GGG | 0.643947 | 4_3:+58817797 | Msa0651440:CDS |
| AACCCAATGTCTGACTCTGA+TGG | 0.644248 | 4_3:+58820502 | Msa0651440:CDS |
| AAAGATCAAGCTAAGTTGCG+TGG | 0.646540 | 4_3:+58820844 | Msa0651440:CDS |
| AGAATACGAGGATTTACCGT+GGG | 0.647151 | 4_3:+58817746 | Msa0651440:CDS |
| GAGCAGAATGGTCAAACTAG+AGG | 0.648793 | 4_3:+58820646 | Msa0651440:CDS |
| AAGCCATTGCTGCTTAAGCG+GGG | 0.653882 | 4_3:+58820598 | Msa0651440:CDS |
| GAAGATCAAGCTAAGTTGCG+TGG | 0.658927 | 4_3:+58820940 | Msa0651440:CDS |
| ATGGTCAAACTAGAGGTCGA+GGG | 0.663574 | 4_3:+58820653 | Msa0651440:CDS |
| TTGTGTGTAATGAGAATGGG+AGG | 0.666092 | 4_3:+58817823 | Msa0651440:CDS |
| GAATCAGATTCTGACTTACG+AGG | 0.667216 | 4_3:-58820562 | None:intergenic |
| GTTTGTGAAAAGAGAATACG+AGG | 0.669635 | 4_3:+58817734 | Msa0651440:CDS |
| TTAGATCAAGCTAAGTTGTG+TGG | 0.670763 | 4_3:+58820799 | Msa0651440:CDS |
| GTCAAACTAGAGGTCGAGGG+AGG | 0.671711 | 4_3:+58820656 | Msa0651440:CDS |
| GTGATATGATACCATAGCAG+AGG | 0.675455 | 4_3:+58821016 | Msa0651440:exon |
| TGAGTCTCTGAGTTGAGACA+TGG | 0.677723 | 4_3:-58817408 | None:intergenic |
| GAGATTGAATGAAGGAAGAG+CGG | 0.685550 | 4_3:-58817487 | None:intergenic |
| AGTGTGTGATGCCATAGCAG+AGG | 0.686518 | 4_3:+58820906 | Msa0651440:CDS |
| TGGTATCATATCACACACCT+TGG | 0.693412 | 4_3:-58821007 | None:intergenic |
| AATAGAAGGGGTAATCGTGG+AGG | 0.703465 | 4_3:+58817918 | Msa0651440:CDS |
| GATCAAGCTAAGTTGTGTGG+TGG | 0.713983 | 4_3:+58820802 | Msa0651440:CDS |
| GAGGTTGTGTGAAACTGGGG+AGG | 0.718982 | 4_3:+58817800 | Msa0651440:CDS |
| TTGAGGTATTCTCAACATGG+CGG | 0.723986 | 4_3:+58817316 | Msa0651440:exon |
| AGTCATACATTATACCTGTG+CGG | 0.725687 | 4_3:+58821188 | Msa0651440:three_prime_UTR |
| GAGAATACGAGGATTTACCG+TGG | 0.727570 | 4_3:+58817745 | Msa0651440:CDS |
| GTGTGTGCAGATGATAAACA+AGG | 0.750453 | 4_3:+58817659 | Msa0651440:intron |
| AGACAAAATAGGCTCCACGG+AGG | 0.776587 | 4_3:+58817698 | Msa0651440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATCAAAAATAAGATA+CGG | - | chr4_3:58818672-58818691 | None:intergenic | 10.0% |
| !! | AAGTAATAATTGTTAAAAAA+TGG | - | chr4_3:58819994-58820013 | None:intergenic | 10.0% |
| !!! | AATTATTACTTTAAAGAATT+AGG | + | chr4_3:58820003-58820022 | Msa0651440:intron | 10.0% |
| !!! | TTTTTTTATTAATGTCGTAT+TGG | - | chr4_3:58818214-58818233 | None:intergenic | 15.0% |
| !! | TAAATATAACAATATTCTAG+TGG | - | chr4_3:58818309-58818328 | None:intergenic | 15.0% |
| !! | TGATTAAAAAAACACAAATT+TGG | + | chr4_3:58818350-58818369 | Msa0651440:intron | 15.0% |
| !! | GATTAAAAAAACACAAATTT+GGG | + | chr4_3:58818351-58818370 | Msa0651440:intron | 15.0% |
| !!! | AATTTTGCATTAATGAAAAA+AGG | - | chr4_3:58820132-58820151 | None:intergenic | 15.0% |
| !! | TGAATTGTTGATATCAAATT+AGG | - | chr4_3:58819557-58819576 | None:intergenic | 20.0% |
| !! | TAAAACTACGTAATCAAATT+AGG | - | chr4_3:58819601-58819620 | None:intergenic | 20.0% |
| !!! | AAGTTTCTTTTGATGAATAT+TGG | - | chr4_3:58819901-58819920 | None:intergenic | 20.0% |
| !! | TCTTGAAAGAAAAAAAAGTT+AGG | - | chr4_3:58820055-58820074 | None:intergenic | 20.0% |
| !! | ATTACAAACTTGTGATTAAA+GGG | - | chr4_3:58820184-58820203 | None:intergenic | 20.0% |
| !! | TATAAATAGCAACTTAAATC+TGG | - | chr4_3:58821111-58821130 | None:intergenic | 20.0% |
| !!! | TTTGCTGTTTTGGTAATTTA+TGG | + | chr4_3:58818060-58818079 | Msa0651440:intron | 25.0% |
| ! | AAAACTCAAAATGCAGAAAT+TGG | + | chr4_3:58818230-58818249 | Msa0651440:intron | 25.0% |
| ! | AAACTCAAAATGCAGAAATT+GGG | + | chr4_3:58818231-58818250 | Msa0651440:intron | 25.0% |
| !!! | TTGGAATTTTTGGCATTTAA+TGG | + | chr4_3:58819220-58819239 | Msa0651440:intron | 25.0% |
| !!! | GTCTCATTAATTTGTATACA+TGG | + | chr4_3:58819266-58819285 | Msa0651440:intron | 25.0% |
| ! | TTGTATACATGGAAATATGA+AGG | + | chr4_3:58819277-58819296 | Msa0651440:intron | 25.0% |
| ! | ATTCACCCAATCAAAAAAAA+AGG | + | chr4_3:58819572-58819591 | Msa0651440:intron | 25.0% |
| !!! | ATTACGTAGTTTTAGCTTTT+TGG | + | chr4_3:58819607-58819626 | Msa0651440:intron | 25.0% |
| ! | AAATAAGATACGAAAGTCTT+TGG | - | chr4_3:58819654-58819673 | None:intergenic | 25.0% |
| ! | CTATACTTTACTGTTAATTG+TGG | + | chr4_3:58819835-58819854 | Msa0651440:intron | 25.0% |
| ! | GTTTAGAGAACAATTGAATA+AGG | - | chr4_3:58819879-58819898 | None:intergenic | 25.0% |
| ! | GATTACAAACTTGTGATTAA+AGG | - | chr4_3:58820185-58820204 | None:intergenic | 25.0% |
| !! | TAAAATTCATTTGTTGCAGA+TGG | + | chr4_3:58820270-58820289 | Msa0651440:intron | 25.0% |
| ! | TACAATGAAGGAAATACTAA+TGG | + | chr4_3:58820466-58820485 | Msa0651440:CDS | 25.0% |
| !!! | AAATCTGGTTTTGATTTAAG+TGG | - | chr4_3:58821096-58821115 | None:intergenic | 25.0% |
| ! | GAGTAGAAATTAAATACACT+TGG | + | chr4_3:58821142-58821161 | Msa0651440:three_prime_UTR | 25.0% |
| AAGAATGAAAAAGCTGTTGA+AGG | - | chr4_3:58817514-58817533 | None:intergenic | 30.0% | |
| ! | CTCTATCTACATTACTGATT+TGG | + | chr4_3:58817589-58817608 | Msa0651440:intron | 30.0% |
| GATGATAAACAAGGCAATAA+CGG | + | chr4_3:58817668-58817687 | Msa0651440:intron | 30.0% | |
| ACGGAATTGAAAGACAAAAT+AGG | + | chr4_3:58817687-58817706 | Msa0651440:CDS | 30.0% | |
| ACAAATCATATGAATGGTCA+GGG | - | chr4_3:58818429-58818448 | None:intergenic | 30.0% | |
| TACAAATCATATGAATGGTC+AGG | - | chr4_3:58818430-58818449 | None:intergenic | 30.0% | |
| TCGACTACAAATCATATGAA+TGG | - | chr4_3:58818435-58818454 | None:intergenic | 30.0% | |
| TAGAGTTAAAGACGTGTTAA+AGG | + | chr4_3:58818547-58818566 | Msa0651440:intron | 30.0% | |
| GAAGCAATGATGATCAATTA+AGG | + | chr4_3:58818573-58818592 | Msa0651440:intron | 30.0% | |
| !!! | TTTAGCTTTTCAATACGACA+TGG | + | chr4_3:58818625-58818644 | Msa0651440:intron | 30.0% |
| ! | TAAAACTCATTTGTTGCAGA+TGG | + | chr4_3:58818916-58818935 | Msa0651440:intron | 30.0% |
| ! | GATGGTAAAGAATTTTTCTC+CGG | + | chr4_3:58818934-58818953 | Msa0651440:intron | 30.0% |
| AATTGTAGAACATACTGAAC+TGG | + | chr4_3:58819165-58819184 | Msa0651440:CDS | 30.0% | |
| !!! | ATGCTCTGTTTTGGAATTTT+TGG | + | chr4_3:58819210-58819229 | Msa0651440:intron | 30.0% |
| ! | ATTTAATGGTGCTTTTGCTA+AGG | + | chr4_3:58819234-58819253 | Msa0651440:intron | 30.0% |
| !! | AAACAACTCTAGGATTAGTT+AGG | + | chr4_3:58819302-58819321 | Msa0651440:intron | 30.0% |
| !!! | GGTGTCCTTTTTTTTTGATT+GGG | - | chr4_3:58819580-58819599 | None:intergenic | 30.0% |
| !!! | AGGTGTCCTTTTTTTTTGAT+TGG | - | chr4_3:58819581-58819600 | None:intergenic | 30.0% |
| !!! | TTTAGCTTTTTGGTAGTAGA+TGG | + | chr4_3:58819617-58819636 | Msa0651440:intron | 30.0% |
| TTTACTGTTAATTGTGGCAT+TGG | + | chr4_3:58819841-58819860 | Msa0651440:intron | 30.0% | |
| !! | ATTTATGCAGATTTTGACGA+CGG | + | chr4_3:58819940-58819959 | Msa0651440:intron | 30.0% |
| GAACAGAAGAAAAGAAACAT+GGG | + | chr4_3:58819962-58819981 | Msa0651440:intron | 30.0% | |
| TTTGTAATCTGCATCTGTTT+AGG | + | chr4_3:58820196-58820215 | Msa0651440:intron | 30.0% | |
| ! | AATATCGACTGACATTGATA+CGG | + | chr4_3:58820387-58820406 | Msa0651440:CDS | 30.0% |
| ACAATGTGAAGAGGAATTAA+AGG | + | chr4_3:58820705-58820724 | Msa0651440:CDS | 30.0% | |
| AATTAAAGGAGTCAGAAGAA+AGG | + | chr4_3:58820719-58820738 | Msa0651440:CDS | 30.0% | |
| AAATACACTTGGAAGTAGTT+TGG | + | chr4_3:58821153-58821172 | Msa0651440:three_prime_UTR | 30.0% | |
| ! | GAGAATACCTCAAAGGTTTT+CGG | - | chr4_3:58817309-58817328 | None:intergenic | 35.0% |
| TAGATAGAGAGAAAGAGAGA+GGG | - | chr4_3:58817578-58817597 | None:intergenic | 35.0% | |
| GTTTGTGAAAAGAGAATACG+AGG | + | chr4_3:58817734-58817753 | Msa0651440:CDS | 35.0% | |
| !! | TTTTGAGTCTTCATCTCAAG+AGG | + | chr4_3:58817781-58817800 | Msa0651440:CDS | 35.0% |
| AGGTTGTGTGTAATGAGAAT+GGG | + | chr4_3:58817820-58817839 | Msa0651440:CDS | 35.0% | |
| GGATGAATTTGGTTAGTGTT+GGG | + | chr4_3:58817955-58817974 | Msa0651440:CDS | 35.0% | |
| GAGAGTGATCATCATTCAAT+TGG | + | chr4_3:58818005-58818024 | Msa0651440:CDS | 35.0% | |
| TTGAAGAACAGACACAAGTT+CGG | + | chr4_3:58818033-58818052 | Msa0651440:CDS | 35.0% | |
| ! | ATGGCATTTGATGTTTGCTA+AGG | + | chr4_3:58818079-58818098 | Msa0651440:intron | 35.0% |
| ! | ATTAAAGGGGCACAAAATGT+GGG | - | chr4_3:58818818-58818837 | None:intergenic | 35.0% |
| ATCACAGACTGGTGATTAAA+GGG | - | chr4_3:58818832-58818851 | None:intergenic | 35.0% | |
| ! | TTGTGTTTGTTAGATAGTGC+TGG | + | chr4_3:58819055-58819074 | Msa0651440:CDS | 35.0% |
| ! | TGTGTTTGTTAGATAGTGCT+GGG | + | chr4_3:58819056-58819075 | Msa0651440:CDS | 35.0% |
| ACACAAATACAACCTGAAGA+GGG | + | chr4_3:58819142-58819161 | Msa0651440:CDS | 35.0% | |
| ! | TCAGGTATTATGCTCTGTTT+TGG | + | chr4_3:58819201-58819220 | Msa0651440:intron | 35.0% |
| TATGAAGGACAAACAACTCT+AGG | + | chr4_3:58819292-58819311 | Msa0651440:intron | 35.0% | |
| GTGTCATATGAATACTGCAA+TGG | - | chr4_3:58819364-58819383 | None:intergenic | 35.0% | |
| TGAAGCAATGATGATCAATG+AGG | + | chr4_3:58819520-58819539 | Msa0651440:intron | 35.0% | |
| GAAGCAATGATGATCAATGA+GGG | + | chr4_3:58819521-58819540 | Msa0651440:intron | 35.0% | |
| AAGCAATGATGATCAATGAG+GGG | + | chr4_3:58819522-58819541 | Msa0651440:intron | 35.0% | |
| AATGCAGAGCTCAAAAACAT+AGG | - | chr4_3:58819814-58819833 | None:intergenic | 35.0% | |
| GGAACAGAAGAAAAGAAACA+TGG | + | chr4_3:58819961-58819980 | Msa0651440:intron | 35.0% | |
| AAACTTGTGATTAAAGGGAC+AGG | - | chr4_3:58820179-58820198 | None:intergenic | 35.0% | |
| GTAGCGAAATTTATGCAGAA+AGG | + | chr4_3:58820296-58820315 | Msa0651440:CDS | 35.0% | |
| ATGTCAGTCGATATTTGATG+TGG | - | chr4_3:58820382-58820401 | None:intergenic | 35.0% | |
| ! | ATATCGACTGACATTGATAC+GGG | + | chr4_3:58820388-58820407 | Msa0651440:CDS | 35.0% |
| GACCAAAAACAAGAAGAAGA+AGG | + | chr4_3:58820624-58820643 | Msa0651440:CDS | 35.0% | |
| !!! | CTCCTTCTTCTTCTTGTTTT+TGG | - | chr4_3:58820629-58820648 | None:intergenic | 35.0% |
| GTATCTTGATTTACCTTACG+AGG | - | chr4_3:58820682-58820701 | None:intergenic | 35.0% | |
| AGATACTGAACAATGTGAAG+AGG | + | chr4_3:58820696-58820715 | Msa0651440:CDS | 35.0% | |
| GGAAAGAAGAAGAAAAGTCA+AGG | + | chr4_3:58820740-58820759 | Msa0651440:CDS | 35.0% | |
| TTAGATCAAGCTAAGTTGTG+TGG | + | chr4_3:58820799-58820818 | Msa0651440:CDS | 35.0% | |
| AGTCATACATTATACCTGTG+CGG | + | chr4_3:58821188-58821207 | Msa0651440:three_prime_UTR | 35.0% | |
| CCATGTTGAGAATACCTCAA+AGG | - | chr4_3:58817316-58817335 | None:intergenic | 40.0% | |
| !! | CCTTTGAGGTATTCTCAACA+TGG | + | chr4_3:58817313-58817332 | Msa0651440:exon | 40.0% |
| ! | TTGAGGTATTCTCAACATGG+CGG | + | chr4_3:58817316-58817335 | Msa0651440:exon | 40.0% |
| AGAAGGGATTGTTCTTCTTC+AGG | - | chr4_3:58817353-58817372 | None:intergenic | 40.0% | |
| ! | GTTGTTGTTGATTGCGGAAT+CGG | - | chr4_3:58817384-58817403 | None:intergenic | 40.0% |
| GAGATTGAATGAAGGAAGAG+CGG | - | chr4_3:58817490-58817509 | None:intergenic | 40.0% | |
| TTGAAGGCGAGATTGAATGA+AGG | - | chr4_3:58817498-58817517 | None:intergenic | 40.0% | |
| AGATAGAGAGAAAGAGAGAG+GGG | - | chr4_3:58817577-58817596 | None:intergenic | 40.0% | |
| GTAGATAGAGAGAAAGAGAG+AGG | - | chr4_3:58817579-58817598 | None:intergenic | 40.0% | |
| GTGTGTGCAGATGATAAACA+AGG | + | chr4_3:58817659-58817678 | Msa0651440:intron | 40.0% | |
| GAAAGACAAAATAGGCTCCA+CGG | + | chr4_3:58817695-58817714 | Msa0651440:CDS | 40.0% | |
| AGAATACGAGGATTTACCGT+GGG | + | chr4_3:58817746-58817765 | Msa0651440:CDS | 40.0% | |
| TCAAGAGGTTGTGTGAAACT+GGG | + | chr4_3:58817796-58817815 | Msa0651440:CDS | 40.0% | |
| GAGGTTGTGTGTAATGAGAA+TGG | + | chr4_3:58817819-58817838 | Msa0651440:CDS | 40.0% | |
| TTGTGTGTAATGAGAATGGG+AGG | + | chr4_3:58817823-58817842 | Msa0651440:CDS | 40.0% | |
| !! | GGAGGTATGTTTTTCCTACT+GGG | + | chr4_3:58817841-58817860 | Msa0651440:CDS | 40.0% |
| ! | GAGGTATGTTTTTCCTACTG+GGG | + | chr4_3:58817842-58817861 | Msa0651440:CDS | 40.0% |
| ! | AGGTATGTTTTTCCTACTGG+GGG | + | chr4_3:58817843-58817862 | Msa0651440:CDS | 40.0% |
| ! | GAGAAAGAAAAGCGTAAGTG+TGG | + | chr4_3:58817873-58817892 | Msa0651440:CDS | 40.0% |
| ! | AAGAAAAGCGTAAGTGTGGT+AGG | + | chr4_3:58817877-58817896 | Msa0651440:CDS | 40.0% |
| TGTAGAGAGAGGGATGAATT+TGG | + | chr4_3:58817944-58817963 | Msa0651440:CDS | 40.0% | |
| GGGATGAATTTGGTTAGTGT+TGG | + | chr4_3:58817954-58817973 | Msa0651440:CDS | 40.0% | |
| TGAAGAACAGACACAAGTTC+GGG | + | chr4_3:58818034-58818053 | Msa0651440:CDS | 40.0% | |
| !!! | GTTCGGGTATTTTGCTGTTT+TGG | + | chr4_3:58818050-58818069 | Msa0651440:intron | 40.0% |
| GAATATCTCTAGGTCGGATT+AGG | + | chr4_3:58818149-58818168 | Msa0651440:intron | 40.0% | |
| AACACAACACGTGTCGAATA+TGG | - | chr4_3:58818186-58818205 | None:intergenic | 40.0% | |
| ATATTCTAGTGGTAGCCTAG+CGG | - | chr4_3:58818298-58818317 | None:intergenic | 40.0% | |
| ! | TTTGGGCCCCAAAAATTTTG+AGG | + | chr4_3:58818368-58818387 | Msa0651440:intron | 40.0% |
| ! | ACAGGGCCTCAAAATTTTTG+GGG | - | chr4_3:58818377-58818396 | None:intergenic | 40.0% |
| ! | CACAGGGCCTCAAAATTTTT+GGG | - | chr4_3:58818378-58818397 | None:intergenic | 40.0% |
| ! | TTAAAGGGGCACAAAATGTG+GGG | - | chr4_3:58818817-58818836 | None:intergenic | 40.0% |
| ! | GATTAAAGGGGCACAAAATG+TGG | - | chr4_3:58818819-58818838 | None:intergenic | 40.0% |
| TCACAGACTGGTGATTAAAG+GGG | - | chr4_3:58818831-58818850 | None:intergenic | 40.0% | |
| GATCACAGACTGGTGATTAA+AGG | - | chr4_3:58818833-58818852 | None:intergenic | 40.0% | |
| ! | AAGAATTTTTCTCCGGCTGA+TGG | + | chr4_3:58818941-58818960 | Msa0651440:CDS | 40.0% |
| AGTGAGAGTGATCGTTCAAT+TGG | + | chr4_3:58819103-58819122 | Msa0651440:CDS | 40.0% | |
| !! | TCGTTCAATTGGAAGTGTTG+AGG | + | chr4_3:58819114-58819133 | Msa0651440:CDS | 40.0% |
| GACACAAATACAACCTGAAG+AGG | + | chr4_3:58819141-58819160 | Msa0651440:CDS | 40.0% | |
| TGTTCTACAATTCCCTCTTC+AGG | - | chr4_3:58819157-58819176 | None:intergenic | 40.0% | |
| ACTGGAAGAGACACAAATTC+AGG | + | chr4_3:58819183-58819202 | Msa0651440:CDS | 40.0% | |
| ! | GTGTCTAAAGTGCGTCAAAA+TGG | - | chr4_3:58819456-58819475 | None:intergenic | 40.0% |
| CAACACATCTTTAACTCCAC+AGG | - | chr4_3:58819502-58819521 | None:intergenic | 40.0% | |
| !! | GCTTTTTGGTAGTAGATGGA+TGG | + | chr4_3:58819621-58819640 | Msa0651440:intron | 40.0% |
| TACATGTCTCCGTATCTTGT+TGG | + | chr4_3:58820090-58820109 | Msa0651440:intron | 40.0% | |
| ACATGTCTCCGTATCTTGTT+GGG | + | chr4_3:58820091-58820110 | Msa0651440:intron | 40.0% | |
| ATGAAAAAAGGACTCCGACA+CGG | - | chr4_3:58820120-58820139 | None:intergenic | 40.0% | |
| CCTGTAGATATTATGCACTC+TGG | - | chr4_3:58820325-58820344 | None:intergenic | 40.0% | |
| CCAGAGTGCATAATATCTAC+AGG | + | chr4_3:58820322-58820341 | Msa0651440:CDS | 40.0% | |
| TGCATAATATCTACAGGTCC+AGG | + | chr4_3:58820328-58820347 | Msa0651440:CDS | 40.0% | |
| ! | GGTGATGATGATTCTATTCC+TGG | - | chr4_3:58820349-58820368 | None:intergenic | 40.0% |
| AGAATCATCATCACCAACAC+AGG | + | chr4_3:58820354-58820373 | Msa0651440:CDS | 40.0% | |
| TTTCCTTCATTGTAGTCCTG+AGG | - | chr4_3:58820460-58820479 | None:intergenic | 40.0% | |
| ATGCAACCAAAGAGAAAGAG+AGG | + | chr4_3:58820535-58820554 | Msa0651440:CDS | 40.0% | |
| AACCAAAGAGAAAGAGAGGA+AGG | + | chr4_3:58820539-58820558 | Msa0651440:CDS | 40.0% | |
| GAATCAGATTCTGACTTACG+AGG | - | chr4_3:58820565-58820584 | None:intergenic | 40.0% | |
| AAGAAGAAGAAGGAGCAGAA+TGG | + | chr4_3:58820634-58820653 | Msa0651440:CDS | 40.0% | |
| AAAGATCAAGCTAAGTTGCG+TGG | + | chr4_3:58820844-58820863 | Msa0651440:CDS | 40.0% | |
| ! | TTAGCTTGATCTTCAGAAGC+TGG | - | chr4_3:58820934-58820953 | None:intergenic | 40.0% |
| TGGTATCATATCACACACCT+TGG | - | chr4_3:58821010-58821029 | None:intergenic | 40.0% | |
| GTGATATGATACCATAGCAG+AGG | + | chr4_3:58821016-58821035 | Msa0651440:exon | 40.0% | |
| ! | CTCAAAGGTTTTCGGTCTCA+CGG | - | chr4_3:58817301-58817320 | None:intergenic | 45.0% |
| GGAATCGGTGTGAAGAAGAA+GGG | - | chr4_3:58817369-58817388 | None:intergenic | 45.0% | |
| ! | GGCTGAGTTGTTGTTGATTG+CGG | - | chr4_3:58817390-58817409 | None:intergenic | 45.0% |
| ! | TGAGTCTCTGAGTTGAGACA+TGG | - | chr4_3:58817411-58817430 | None:intergenic | 45.0% |
| GGTTAGAGAAGGGTTGAGTT+GGG | - | chr4_3:58817450-58817469 | None:intergenic | 45.0% | |
| GATAGAGAGAAAGAGAGAGG+GGG | - | chr4_3:58817576-58817595 | None:intergenic | 45.0% | |
| GAGAATACGAGGATTTACCG+TGG | + | chr4_3:58817745-58817764 | Msa0651440:CDS | 45.0% | |
| AAAATCTTCCCATGTGCCCA+CGG | - | chr4_3:58817765-58817784 | None:intergenic | 45.0% | |
| CTCAAGAGGTTGTGTGAAAC+TGG | + | chr4_3:58817795-58817814 | Msa0651440:CDS | 45.0% | |
| CAAGAGGTTGTGTGAAACTG+GGG | + | chr4_3:58817797-58817816 | Msa0651440:CDS | 45.0% | |
| !! | GGGAGGTATGTTTTTCCTAC+TGG | + | chr4_3:58817840-58817859 | Msa0651440:CDS | 45.0% |
| GAAGAGAGGGGGTAATAGAA+GGG | + | chr4_3:58817905-58817924 | Msa0651440:CDS | 45.0% | |
| AAGAGAGGGGGTAATAGAAG+GGG | + | chr4_3:58817906-58817925 | Msa0651440:CDS | 45.0% | |
| GGTAATAGAAGGGGTAATCG+TGG | + | chr4_3:58817915-58817934 | Msa0651440:CDS | 45.0% | |
| AATAGAAGGGGTAATCGTGG+AGG | + | chr4_3:58817918-58817937 | Msa0651440:CDS | 45.0% | |
| TTAAGCGCGCGAATATCTCT+AGG | + | chr4_3:58818139-58818158 | Msa0651440:intron | 45.0% | |
| ! | ATCTCTAGGTCGGATTAGGT+AGG | + | chr4_3:58818153-58818172 | Msa0651440:intron | 45.0% |
| ! | GCACAGGGCCTCAAAATTTT+TGG | - | chr4_3:58818379-58818398 | None:intergenic | 45.0% |
| ATCATATGAATGGTCAGGGC+CGG | - | chr4_3:58818425-58818444 | None:intergenic | 45.0% | |
| ATGTCTCCGATGAGTGTCTA+AGG | - | chr4_3:58818513-58818532 | None:intergenic | 45.0% | |
| GAAGAGAAGGAAGGTGGTAA+GGG | + | chr4_3:58818968-58818987 | Msa0651440:CDS | 45.0% | |
| ACACTGATGCGTGTCGAATA+CGG | - | chr4_3:58819335-58819354 | None:intergenic | 45.0% | |
| AGACATCTTAGACACACCTG+TGG | + | chr4_3:58819483-58819502 | Msa0651440:intron | 45.0% | |
| GGTAGTAGATGGATGGTTGA+AGG | + | chr4_3:58819628-58819647 | Msa0651440:intron | 45.0% | |
| GATTAAAGGGACAGGAATGC+AGG | - | chr4_3:58820171-58820190 | None:intergenic | 45.0% | |
| ATTTGATGTGGCACCTGTGT+TGG | - | chr4_3:58820370-58820389 | None:intergenic | 45.0% | |
| ! | ACTGCACTAGTTTGTGCGAA+TGG | + | chr4_3:58820418-58820437 | Msa0651440:CDS | 45.0% |
| AACCCAATGTCTGACTCTGA+TGG | + | chr4_3:58820502-58820521 | Msa0651440:CDS | 45.0% | |
| GACCATCAGAGTCAGACATT+GGG | - | chr4_3:58820507-58820526 | None:intergenic | 45.0% | |
| AGACCATCAGAGTCAGACAT+TGG | - | chr4_3:58820508-58820527 | None:intergenic | 45.0% | |
| TAAGCAGCAATGGCTTCTCT+TGG | - | chr4_3:58820594-58820613 | None:intergenic | 45.0% | |
| ! | AGAAGCCATTGCTGCTTAAG+CGG | + | chr4_3:58820596-58820615 | Msa0651440:CDS | 45.0% |
| GAGCAGAATGGTCAAACTAG+AGG | + | chr4_3:58820646-58820665 | Msa0651440:CDS | 45.0% | |
| AATGGTCAAACTAGAGGTCG+AGG | + | chr4_3:58820652-58820671 | Msa0651440:CDS | 45.0% | |
| ATGGTCAAACTAGAGGTCGA+GGG | + | chr4_3:58820653-58820672 | Msa0651440:CDS | 45.0% | |
| GATCAAGCTAAGTTGTGTGG+TGG | + | chr4_3:58820802-58820821 | Msa0651440:CDS | 45.0% | |
| GCTATGGCATCACACACTTT+AGG | - | chr4_3:58820904-58820923 | None:intergenic | 45.0% | |
| GAAGATCAAGCTAAGTTGCG+TGG | + | chr4_3:58820940-58820959 | Msa0651440:CDS | 45.0% | |
| ! | ATATCACACACCTTGGCCTT+AGG | - | chr4_3:58821003-58821022 | None:intergenic | 45.0% |
| CCTTGAACTTCACATGGTTG+TGG | - | chr4_3:58821057-58821076 | None:intergenic | 45.0% | |
| CCACAACCATGTGAAGTTCA+AGG | + | chr4_3:58821054-58821073 | Msa0651440:three_prime_UTR | 45.0% | |
| CCTCTACCTTGAACTTCACA+TGG | - | chr4_3:58821063-58821082 | None:intergenic | 45.0% | |
| CCATGTGAAGTTCAAGGTAG+AGG | + | chr4_3:58821060-58821079 | Msa0651440:three_prime_UTR | 45.0% | |
| TGTGAAGTTCAAGGTAGAGG+TGG | + | chr4_3:58821063-58821082 | Msa0651440:three_prime_UTR | 45.0% | |
| CGTGAGACCGAAAACCTTTG+AGG | + | chr4_3:58817299-58817318 | Msa0651440:five_prime_UTR | 50.0% | |
| CGGAATCGGTGTGAAGAAGA+AGG | - | chr4_3:58817370-58817389 | None:intergenic | 50.0% | |
| GGGTTAGAGAAGGGTTGAGT+TGG | - | chr4_3:58817451-58817470 | None:intergenic | 50.0% | |
| GAAGGAAGAGCGGTCGATTA+GGG | - | chr4_3:58817480-58817499 | None:intergenic | 50.0% | |
| TGAAGGAAGAGCGGTCGATT+AGG | - | chr4_3:58817481-58817500 | None:intergenic | 50.0% | |
| TGCATACCAAGGCGTAAGGA+GGG | - | chr4_3:58817553-58817572 | None:intergenic | 50.0% | |
| AGACAAAATAGGCTCCACGG+AGG | + | chr4_3:58817698-58817717 | Msa0651440:CDS | 50.0% | |
| AGGATTTACCGTGGGCACAT+GGG | + | chr4_3:58817754-58817773 | Msa0651440:CDS | 50.0% | |
| ! | TGTTTTTCCTACTGGGGGTG+TGG | + | chr4_3:58817848-58817867 | Msa0651440:CDS | 50.0% |
| AGCGTAAGTGTGGTAGGAAG+AGG | + | chr4_3:58817883-58817902 | Msa0651440:CDS | 50.0% | |
| TGTGGTAGGAAGAGGAAGAG+AGG | + | chr4_3:58817891-58817910 | Msa0651440:CDS | 50.0% | |
| GTGGTAGGAAGAGGAAGAGA+GGG | + | chr4_3:58817892-58817911 | Msa0651440:CDS | 50.0% | |
| TGGTAGGAAGAGGAAGAGAG+GGG | + | chr4_3:58817893-58817912 | Msa0651440:CDS | 50.0% | |
| GGAAGAGAGGGGGTAATAGA+AGG | + | chr4_3:58817904-58817923 | Msa0651440:CDS | 50.0% | |
| GTGGAGGAGATGTAGAGAGA+GGG | + | chr4_3:58817934-58817953 | Msa0651440:CDS | 50.0% | |
| !!! | AATTTTGAGGCCCTGTGCCA+TGG | + | chr4_3:58818381-58818400 | Msa0651440:intron | 50.0% |
| !!! | ATTTTGAGGCCCTGTGCCAT+GGG | + | chr4_3:58818382-58818401 | Msa0651440:intron | 50.0% |
| GACGCACCTTAGACACTCAT+CGG | + | chr4_3:58818504-58818523 | Msa0651440:intron | 50.0% | |
| AACAGACGCAGATCACAGAC+TGG | - | chr4_3:58818843-58818862 | None:intergenic | 50.0% | |
| GTCTGTGATCTGCGTCTGTT+AGG | + | chr4_3:58818843-58818862 | Msa0651440:intron | 50.0% | |
| !! | TTTTTCTCCGGCTGATGGTG+AGG | + | chr4_3:58818946-58818965 | Msa0651440:CDS | 50.0% |
| TTCTCTTCCTCACCATCAGC+CGG | - | chr4_3:58818956-58818975 | None:intergenic | 50.0% | |
| GATGGTGAGGAAGAGAAGGA+AGG | + | chr4_3:58818959-58818978 | Msa0651440:CDS | 50.0% | |
| GGAAGAGAAGGAAGGTGGTA+AGG | + | chr4_3:58818967-58818986 | Msa0651440:CDS | 50.0% | |
| AGGAAGGTGGTAAGGGTAGT+AGG | + | chr4_3:58818975-58818994 | Msa0651440:CDS | 50.0% | |
| GTGGTAAGGGTAGTAGGAAG+AGG | + | chr4_3:58818981-58819000 | Msa0651440:CDS | 50.0% | |
| AGGGTAGTAGGAAGAGGAAG+AGG | + | chr4_3:58818987-58819006 | Msa0651440:CDS | 50.0% | |
| GGGTAGTAGGAAGAGGAAGA+GGG | + | chr4_3:58818988-58819007 | Msa0651440:CDS | 50.0% | |
| GGTAGTAGGAAGAGGAAGAG+GGG | + | chr4_3:58818989-58819008 | Msa0651440:CDS | 50.0% | |
| ACAAGGAGTAGTCGTGGAGA+CGG | + | chr4_3:58819016-58819035 | Msa0651440:CDS | 50.0% | |
| CACGGACACCCAACAAGATA+CGG | - | chr4_3:58820102-58820121 | None:intergenic | 50.0% | |
| ATCTTGTTGGGTGTCCGTGT+CGG | + | chr4_3:58820103-58820122 | Msa0651440:intron | 50.0% | |
| ! | ATATGATGACGAGCGTCCTC+AGG | + | chr4_3:58820441-58820460 | Msa0651440:CDS | 50.0% |
| CGTCCTCAGGACTACAATGA+AGG | + | chr4_3:58820454-58820473 | Msa0651440:CDS | 50.0% | |
| ! | GTCTGACTCTGATGGTCTTG+AGG | + | chr4_3:58820510-58820529 | Msa0651440:CDS | 50.0% |
| GGCCTTCCTCTCTTTCTCTT+TGG | - | chr4_3:58820544-58820563 | None:intergenic | 50.0% | |
| ! | GAAGCCATTGCTGCTTAAGC+GGG | + | chr4_3:58820597-58820616 | Msa0651440:CDS | 50.0% |
| ! | AAGCCATTGCTGCTTAAGCG+GGG | + | chr4_3:58820598-58820617 | Msa0651440:CDS | 50.0% |
| CAAGCTAAGTTGCGTGGTCA+AGG | + | chr4_3:58820850-58820869 | Msa0651440:CDS | 50.0% | |
| AGTGTGTGATGCCATAGCAG+AGG | + | chr4_3:58820906-58820925 | Msa0651440:CDS | 50.0% | |
| AGAATCAAGAGCAACCGCAC+AGG | - | chr4_3:58821205-58821224 | None:intergenic | 50.0% | |
| GGGTGGAAGGGGTTAGAGAA+GGG | - | chr4_3:58817460-58817479 | None:intergenic | 55.0% | |
| AGGGTGGAAGGGGTTAGAGA+AGG | - | chr4_3:58817461-58817480 | None:intergenic | 55.0% | |
| AGCGGTCGATTAGGGTGGAA+GGG | - | chr4_3:58817472-58817491 | None:intergenic | 55.0% | |
| AAGGCGTAAGGAGGGTGAGT+GGG | - | chr4_3:58817545-58817564 | None:intergenic | 55.0% | |
| GTGCATACCAAGGCGTAAGG+AGG | - | chr4_3:58817554-58817573 | None:intergenic | 55.0% | |
| CAAAATAGGCTCCACGGAGG+AGG | + | chr4_3:58817701-58817720 | Msa0651440:CDS | 55.0% | |
| GAGGATTTACCGTGGGCACA+TGG | + | chr4_3:58817753-58817772 | Msa0651440:CDS | 55.0% | |
| GAGGTTGTGTGAAACTGGGG+AGG | + | chr4_3:58817800-58817819 | Msa0651440:CDS | 55.0% | |
| TTCTCTTCCACACCCCCAGT+AGG | - | chr4_3:58817858-58817877 | None:intergenic | 55.0% | |
| GGTAGGAAGAGGAAGAGAGG+GGG | + | chr4_3:58817894-58817913 | Msa0651440:CDS | 55.0% | |
| CGTGGAGGAGATGTAGAGAG+AGG | + | chr4_3:58817933-58817952 | Msa0651440:CDS | 55.0% | |
| GCGCGCGAATATCTCTAGGT+CGG | + | chr4_3:58818143-58818162 | Msa0651440:intron | 55.0% | |
| GTCTGTTCGTCGGTAATGCG+TGG | - | chr4_3:58818271-58818290 | None:intergenic | 55.0% | |
| ! | TAGCGGACACGTCTGTTCGT+CGG | - | chr4_3:58818281-58818300 | None:intergenic | 55.0% |
| ! | GGCTGATGGTGAGGAAGAGA+AGG | + | chr4_3:58818955-58818974 | Msa0651440:CDS | 55.0% |
| GGTGAGGAAGAGAAGGAAGG+TGG | + | chr4_3:58818962-58818981 | Msa0651440:CDS | 55.0% | |
| AGAGGAAGAGGGGCAACACA+AGG | + | chr4_3:58818999-58819018 | Msa0651440:CDS | 55.0% | |
| GGCAACACAAGGAGTAGTCG+TGG | + | chr4_3:58819010-58819029 | Msa0651440:CDS | 55.0% | |
| GACTGAAGAGCCTTCGACAC+AGG | + | chr4_3:58819078-58819097 | Msa0651440:CDS | 55.0% | |
| CTCTCACTGACCTGTGTCGA+AGG | - | chr4_3:58819091-58819110 | None:intergenic | 55.0% | |
| GTCAAACTAGAGGTCGAGGG+AGG | + | chr4_3:58820656-58820675 | Msa0651440:CDS | 55.0% | |
| AAGTTGCGTGGTCAAGGTCG+TGG | + | chr4_3:58820856-58820875 | Msa0651440:CDS | 55.0% | |
| AGAAGCTGGTGCCTCTGCTA+TGG | - | chr4_3:58820920-58820939 | None:intergenic | 55.0% | |
| CAAGCTAAGTTGCGTGGCTG+TGG | + | chr4_3:58820946-58820965 | Msa0651440:CDS | 55.0% | |
| !! | TCACACACCTTGGCCTTAGG+AGG | - | chr4_3:58821000-58821019 | None:intergenic | 55.0% |
| ! | AGCAGCTGGTTCCTCTGCTA+TGG | - | chr4_3:58821030-58821049 | None:intergenic | 55.0% |
| ATGGTTGTGGCTTCAGCAGC+TGG | - | chr4_3:58821044-58821063 | None:intergenic | 55.0% | |
| GCGGTCGATTAGGGTGGAAG+GGG | - | chr4_3:58817471-58817490 | None:intergenic | 60.0% | |
| GAGCGGTCGATTAGGGTGGA+AGG | - | chr4_3:58817473-58817492 | None:intergenic | 60.0% | |
| GGAAGAGCGGTCGATTAGGG+TGG | - | chr4_3:58817477-58817496 | None:intergenic | 60.0% | |
| AGGCGTAAGGAGGGTGAGTG+GGG | - | chr4_3:58817544-58817563 | None:intergenic | 60.0% | |
| CAAGGCGTAAGGAGGGTGAG+TGG | - | chr4_3:58817546-58817565 | None:intergenic | 60.0% | |
| CACTCACCCTCCTTACGCCT+TGG | + | chr4_3:58817544-58817563 | Msa0651440:CDS | 60.0% | |
| GGGGTGCATACCAAGGCGTA+AGG | - | chr4_3:58817557-58817576 | None:intergenic | 60.0% | |
| ! | GAGAGAGGGGGTGCATACCA+AGG | - | chr4_3:58817564-58817583 | None:intergenic | 60.0% |
| CTCCACGGAGGAGGCGATTT+CGG | + | chr4_3:58817710-58817729 | Msa0651440:CDS | 60.0% | |
| GACGAACAGACGTGTCCGCT+AGG | + | chr4_3:58818280-58818299 | Msa0651440:intron | 60.0% | |
| TGAATGGTCAGGGCCGGAGA+GGG | - | chr4_3:58818419-58818438 | None:intergenic | 60.0% | |
| ATGAATGGTCAGGGCCGGAG+AGG | - | chr4_3:58818420-58818439 | None:intergenic | 60.0% | |
| AGGAGTAGTCGTGGAGACGG+AGG | + | chr4_3:58819019-58819038 | Msa0651440:CDS | 60.0% | |
| GGAGTAGTCGTGGAGACGGA+GGG | + | chr4_3:58819020-58819039 | Msa0651440:CDS | 60.0% | |
| GCTCCCCGCTTAAGCAGCAA+TGG | - | chr4_3:58820604-58820623 | None:intergenic | 60.0% | |
| AAGTTGCGTGGCTGTGGTCG+AGG | + | chr4_3:58820952-58820971 | Msa0651440:CDS | 60.0% | |
| GGCGTAAGGAGGGTGAGTGG+GGG | - | chr4_3:58817543-58817562 | None:intergenic | 65.0% | |
| CTCCGAAATCGCCTCCTCCG+TGG | - | chr4_3:58817715-58817734 | None:intergenic | 65.0% | |
| GCAAGCAGGCCCATGGCACA+GGG | - | chr4_3:58818394-58818413 | None:intergenic | 65.0% | |
| TGCAAGCAGGCCCATGGCAC+AGG | - | chr4_3:58818395-58818414 | None:intergenic | 65.0% | |
| GAATGGTCAGGGCCGGAGAG+GGG | - | chr4_3:58818418-58818437 | None:intergenic | 65.0% | |
| AGTCGTGGAGACGGAGGGAG+TGG | + | chr4_3:58819025-58819044 | Msa0651440:CDS | 65.0% | |
| GTCGTGGAGACGGAGGGAGT+GGG | + | chr4_3:58819026-58819045 | Msa0651440:CDS | 65.0% | |
| AGGTCGAGGGAGGCCTCGTA+AGG | + | chr4_3:58820666-58820685 | Msa0651440:CDS | 65.0% | |
| CGTGGTCAAGGTCGTGGTCG+AGG | + | chr4_3:58820862-58820881 | Msa0651440:CDS | 65.0% | |
| CAAGGTCGTGGTCGAGGTCG+CGG | + | chr4_3:58820868-58820887 | Msa0651440:CDS | 65.0% | |
| GTGGTCGAGGTCGCGGTCAA+GGG | + | chr4_3:58820875-58820894 | Msa0651440:CDS | 65.0% | |
| TGGTCGAGGGAGGCCTCCTA+AGG | + | chr4_3:58820984-58821003 | Msa0651440:CDS | 65.0% | |
| AGGGAGGCCTCCTAAGGCCA+AGG | + | chr4_3:58820990-58821009 | Msa0651440:CDS | 65.0% | |
| ! | GAGGGGTGCAAGCAGGCCCA+TGG | - | chr4_3:58818401-58818420 | None:intergenic | 70.0% |
| GGCCTGCTTGCACCCCTCTC+CGG | + | chr4_3:58818403-58818422 | Msa0651440:intron | 70.0% | |
| CGTGGTCGAGGTCGCGGTCA+AGG | + | chr4_3:58820874-58820893 | Msa0651440:CDS | 70.0% | |
| GTCGAGGTCGCGGTCAAGGG+AGG | + | chr4_3:58820878-58820897 | Msa0651440:CDS | 70.0% | |
| CGTGGCTGTGGTCGAGGTCG+CGG | + | chr4_3:58820958-58820977 | Msa0651440:CDS | 70.0% | |
| TGTGGTCGAGGTCGCGGTCG+TGG | + | chr4_3:58820964-58820983 | Msa0651440:CDS | 70.0% | |
| GAGGTCGCGGTCGTGGTCGA+GGG | + | chr4_3:58820971-58820990 | Msa0651440:CDS | 70.0% | |
| ! | GGCCGGAGAGGGGTGCAAGC+AGG | - | chr4_3:58818408-58818427 | None:intergenic | 75.0% |
| CGAGGTCGCGGTCGTGGTCG+AGG | + | chr4_3:58820970-58820989 | Msa0651440:CDS | 75.0% | |
| GTCGCGGTCGTGGTCGAGGG+AGG | + | chr4_3:58820974-58820993 | Msa0651440:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 58817282 | 58821250 | 58817282 | ID=Msa0651440;Name=Msa0651440 |
| chr4_3 | mRNA | 58817282 | 58821250 | 58817282 | ID=Msa0651440-mRNA-1;Parent=Msa0651440;Name=Msa0651440-mRNA-1;_AED=0.03;_eAED=0.03;_QI=50|1|1|1|1|1|4|218|544 |
| chr4_3 | exon | 58817282 | 58817565 | 58817282 | ID=Msa0651440-mRNA-1:exon:15644;Parent=Msa0651440-mRNA-1 |
| chr4_3 | exon | 58817669 | 58818055 | 58817669 | ID=Msa0651440-mRNA-1:exon:15645;Parent=Msa0651440-mRNA-1 |
| chr4_3 | exon | 58818935 | 58819204 | 58818935 | ID=Msa0651440-mRNA-1:exon:15646;Parent=Msa0651440-mRNA-1 |
| chr4_3 | exon | 58820289 | 58821250 | 58820289 | ID=Msa0651440-mRNA-1:exon:15647;Parent=Msa0651440-mRNA-1 |
| chr4_3 | five_prime_UTR | 58817282 | 58817331 | 58817282 | ID=Msa0651440-mRNA-1:five_prime_utr;Parent=Msa0651440-mRNA-1 |
| chr4_3 | CDS | 58817332 | 58817565 | 58817332 | ID=Msa0651440-mRNA-1:cds;Parent=Msa0651440-mRNA-1 |
| chr4_3 | CDS | 58817669 | 58818055 | 58817669 | ID=Msa0651440-mRNA-1:cds;Parent=Msa0651440-mRNA-1 |
| chr4_3 | CDS | 58818935 | 58819204 | 58818935 | ID=Msa0651440-mRNA-1:cds;Parent=Msa0651440-mRNA-1 |
| chr4_3 | CDS | 58820289 | 58821032 | 58820289 | ID=Msa0651440-mRNA-1:cds;Parent=Msa0651440-mRNA-1 |
| chr4_3 | three_prime_UTR | 58821033 | 58821250 | 58821033 | ID=Msa0651440-mRNA-1:three_prime_utr;Parent=Msa0651440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
