Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0483770 | XP_013459414.1 | 91.696 | 566 | 39 | 3 | 1 | 563 | 1 | 561 | 0.0 | 1073 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0483770 | sp|Q9LKL2|APRR1_ARATH | 48.460 | 617 | 234 | 19 | 6 | 561 | 1 | 594 | 2.21e-163 | 481 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0483770 | A0A072V5J5 | 91.696 | 566 | 39 | 3 | 1 | 563 | 1 | 561 | 0.0 | 1073 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001810 | Msa0483770 | 0.840992 | 6.223522e-58 | -8.615850e-47 |
| Msa0015930 | Msa0483770 | 0.857498 | 1.567032e-62 | -8.615850e-47 |
| Msa0023010 | Msa0483770 | 0.800217 | 1.598163e-48 | -8.615850e-47 |
| Msa0023040 | Msa0483770 | 0.829964 | 3.833539e-55 | -8.615850e-47 |
| Msa0023050 | Msa0483770 | 0.809205 | 2.123067e-50 | -8.615850e-47 |
| Msa0026680 | Msa0483770 | 0.851523 | 8.397151e-61 | -8.615850e-47 |
| Msa0140630 | Msa0483770 | 0.873593 | 1.304375e-67 | -8.615850e-47 |
| Msa0145080 | Msa0483770 | 0.858695 | 6.905881e-63 | -8.615850e-47 |
| Msa0156370 | Msa0483770 | 0.843547 | 1.310316e-58 | -8.615850e-47 |
| Msa0222310 | Msa0483770 | 0.802865 | 4.579662e-49 | -8.615850e-47 |
| Msa0381500 | Msa0483770 | 0.887774 | 1.061408e-72 | -8.615850e-47 |
| Msa0387830 | Msa0483770 | 0.853173 | 2.846129e-61 | -8.615850e-47 |
| Msa0402210 | Msa0483770 | 0.989787 | 1.209590e-179 | -8.615850e-47 |
| Msa0420790 | Msa0483770 | 0.828865 | 7.090207e-55 | -8.615850e-47 |
| Msa0435980 | Msa0483770 | -0.839065 | 1.979392e-57 | -8.615850e-47 |
| Msa0438470 | Msa0483770 | 0.828401 | 9.177644e-55 | -8.615850e-47 |
| Msa0469560 | Msa0483770 | -0.852055 | 5.931941e-61 | -8.615850e-47 |
| Msa0339040 | Msa0483770 | 0.809028 | 2.316701e-50 | -8.615850e-47 |
| Msa0355140 | Msa0483770 | 0.990372 | 2.526438e-182 | -8.615850e-47 |
| Msa0483770 | Msa0515270 | -0.839096 | 1.943286e-57 | -8.615850e-47 |
| Msa0483770 | Msa0519950 | 0.867978 | 9.185989e-66 | -8.615850e-47 |
| Msa0483770 | Msa0527690 | -0.840962 | 6.337561e-58 | -8.615850e-47 |
| Msa0483770 | Msa0550120 | 0.872613 | 2.779351e-67 | -8.615850e-47 |
| Msa0483770 | Msa0550130 | 0.818188 | 2.233560e-52 | -8.615850e-47 |
| Msa0483770 | Msa0550150 | 0.875181 | 3.773030e-68 | -8.615850e-47 |
| Msa0483770 | Msa0574910 | 0.841646 | 4.187196e-58 | -8.615850e-47 |
| Msa0483770 | Msa0578470 | 0.812017 | 5.237441e-51 | -8.615850e-47 |
| Msa0483770 | Msa0604010 | 0.846531 | 2.049244e-59 | -8.615850e-47 |
| Msa0483770 | Msa0605630 | 0.884568 | 1.715453e-71 | -8.615850e-47 |
| Msa0483770 | Msa0605640 | 0.820290 | 7.417998e-53 | -8.615850e-47 |
| Msa0483770 | Msa0605650 | 0.847140 | 1.396098e-59 | -8.615850e-47 |
| Msa0483770 | Msa0609660 | -0.834155 | 3.530016e-56 | -8.615850e-47 |
| Msa0483770 | Msa0646580 | 0.883085 | 6.044242e-71 | -8.615850e-47 |
| Msa0483770 | Msa0650500 | -0.830921 | 2.236487e-55 | -8.615850e-47 |
| Msa0483770 | Msa0651840 | 0.800952 | 1.132280e-48 | -8.615850e-47 |
| Msa0483770 | Msa0686210 | 0.836657 | 8.228253e-57 | -8.615850e-47 |
| Msa0483770 | Msa0686220 | 0.836078 | 1.155247e-56 | -8.615850e-47 |
| Msa0483770 | Msa0686230 | 0.823105 | 1.656950e-53 | -8.615850e-47 |
| Msa0483770 | Msa0692240 | -0.837780 | 4.246726e-57 | -8.615850e-47 |
| Msa0483770 | Msa0708930 | 0.959149 | 3.997423e-117 | -8.615850e-47 |
| Msa0483770 | Msa0724140 | -0.801376 | 9.271719e-49 | -8.615850e-47 |
| Msa0483770 | Msa0738380 | 0.839439 | 1.583865e-57 | -8.615850e-47 |
| Msa0483770 | Msa0741230 | 0.815517 | 8.875869e-52 | -8.615850e-47 |
| Msa0483770 | Msa0758300 | -0.820985 | 5.135475e-53 | -8.615850e-47 |
| Msa0483770 | Msa0764680 | -0.843313 | 1.512974e-58 | -8.615850e-47 |
| Msa0483770 | Msa0799680 | -0.806431 | 8.254511e-50 | -8.615850e-47 |
| Msa0483770 | Msa0817730 | 0.833625 | 4.790274e-56 | -8.615850e-47 |
| Msa0483770 | Msa0837930 | -0.843648 | 1.231713e-58 | -8.615850e-47 |
| Msa0483770 | Msa0844220 | -0.821268 | 4.420073e-53 | -8.615850e-47 |
| Msa0483770 | Msa0858180 | 0.829043 | 6.419138e-55 | -8.615850e-47 |
| Msa0483770 | Msa0861860 | 0.823005 | 1.748029e-53 | -8.615850e-47 |
| Msa0483770 | Msa0867720 | 0.836234 | 1.054403e-56 | -8.615850e-47 |
| Msa0483770 | Msa0867730 | 0.871785 | 5.244006e-67 | -8.615850e-47 |
| Msa0483770 | Msa0930760 | 0.836558 | 8.720630e-57 | -8.615850e-47 |
| Msa0483770 | Msa0968610 | 0.890427 | 9.954848e-74 | -8.615850e-47 |
| Msa0483770 | Msa0982130 | 0.848597 | 5.539787e-60 | -8.615850e-47 |
| Msa0483770 | Msa1113700 | -0.828932 | 6.827634e-55 | -8.615850e-47 |
| Msa0483770 | Msa1120130 | 0.803979 | 2.691758e-49 | -8.615850e-47 |
| Msa0483770 | Msa1130820 | -0.876544 | 1.283941e-68 | -8.615850e-47 |
| Msa0483770 | Msa1157500 | 0.819005 | 1.457749e-52 | -8.615850e-47 |
| Msa0483770 | Msa1172610 | -0.838126 | 3.460707e-57 | -8.615850e-47 |
| Msa0483770 | Msa1212190 | 0.940119 | 4.021065e-100 | -8.615850e-47 |
| Msa0483770 | Msa1212270 | 0.935999 | 3.494581e-97 | -8.615850e-47 |
| Msa0483770 | Msa1259910 | 0.936795 | 9.796425e-98 | -8.615850e-47 |
| Msa0483770 | Msa1353750 | 0.854933 | 8.844835e-62 | -8.615850e-47 |
| Msa0483770 | Msa1384360 | -0.838764 | 2.369179e-57 | -8.615850e-47 |
| Msa0483770 | Msa1406670 | -0.871781 | 5.259165e-67 | -8.615850e-47 |
| Msa0483770 | Msa1448870 | -0.874341 | 7.287044e-68 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0483770 | MtrunA17_Chr3g0091641 | 91.696 | 566 | 39 | 3 | 1 | 563 | 1 | 561 | 0.0 | 1073 |
| Msa0483770 | MtrunA17_Chr4g0061021 | 65.104 | 576 | 145 | 8 | 10 | 559 | 19 | 564 | 0.0 | 732 |
| Msa0483770 | MtrunA17_Chr3g0127941 | 30.000 | 300 | 177 | 7 | 18 | 316 | 50 | 317 | 9.66e-31 | 127 |
| Msa0483770 | MtrunA17_Chr3g0127941 | 68.889 | 45 | 14 | 0 | 500 | 544 | 630 | 674 | 1.04e-12 | 70.9 |
| Msa0483770 | MtrunA17_Chr4g0030271 | 34.450 | 209 | 127 | 3 | 18 | 220 | 83 | 287 | 9.12e-29 | 121 |
| Msa0483770 | MtrunA17_Chr4g0030271 | 68.750 | 48 | 15 | 0 | 496 | 543 | 717 | 764 | 3.20e-15 | 79.0 |
| Msa0483770 | MtrunA17_Chr8g0345901 | 35.838 | 173 | 94 | 1 | 18 | 190 | 30 | 185 | 1.09e-27 | 117 |
| Msa0483770 | MtrunA17_Chr8g0345901 | 66.667 | 45 | 15 | 0 | 499 | 543 | 583 | 627 | 9.52e-12 | 67.8 |
| Msa0483770 | MtrunA17_Chr7g0276361 | 42.188 | 128 | 74 | 0 | 18 | 145 | 8 | 135 | 3.49e-27 | 115 |
| Msa0483770 | MtrunA17_Chr7g0276361 | 60.000 | 50 | 20 | 0 | 496 | 545 | 537 | 586 | 2.72e-13 | 72.8 |
| Msa0483770 | MtrunA17_Chr1g0181811 | 31.556 | 225 | 136 | 3 | 18 | 229 | 79 | 298 | 2.44e-26 | 114 |
| Msa0483770 | MtrunA17_Chr1g0181811 | 61.404 | 57 | 19 | 1 | 487 | 540 | 678 | 734 | 1.07e-12 | 70.9 |
| Msa0483770 | MtrunA17_Chr1g0161431 | 30.732 | 205 | 126 | 4 | 24 | 228 | 15 | 203 | 1.47e-21 | 99.0 |
| Msa0483770 | MtrunA17_Chr3g0091661 | 65.714 | 70 | 20 | 2 | 37 | 106 | 27 | 92 | 2.55e-21 | 89.0 |
| Msa0483770 | MtrunA17_Chr3g0123131 | 34.959 | 123 | 77 | 1 | 24 | 146 | 17 | 136 | 5.63e-20 | 93.6 |
| Msa0483770 | MtrunA17_Chr2g0294911 | 36.290 | 124 | 76 | 1 | 24 | 147 | 33 | 153 | 1.81e-19 | 92.0 |
| Msa0483770 | MtrunA17_Chr3g0137101 | 34.677 | 124 | 78 | 1 | 24 | 147 | 12 | 132 | 3.70e-19 | 91.3 |
| Msa0483770 | MtrunA17_Chr4g0067981 | 34.677 | 124 | 78 | 1 | 24 | 147 | 35 | 155 | 4.52e-19 | 91.3 |
| Msa0483770 | MtrunA17_Chr2g0304841 | 32.836 | 134 | 85 | 2 | 16 | 147 | 12 | 142 | 1.36e-18 | 89.7 |
| Msa0483770 | MtrunA17_Chr8g0376881 | 34.146 | 123 | 78 | 1 | 24 | 146 | 29 | 148 | 3.15e-18 | 88.2 |
| Msa0483770 | MtrunA17_Chr1g0149841 | 33.065 | 124 | 80 | 1 | 24 | 147 | 9 | 129 | 5.06e-18 | 87.0 |
| Msa0483770 | MtrunA17_Chr7g0275401 | 30.968 | 155 | 100 | 2 | 21 | 171 | 6 | 157 | 8.05e-18 | 84.3 |
| Msa0483770 | MtrunA17_Chr4g0074411 | 33.333 | 123 | 79 | 1 | 24 | 146 | 22 | 141 | 8.41e-18 | 87.0 |
| Msa0483770 | MtrunA17_Chr3g0134481 | 35.338 | 133 | 81 | 2 | 16 | 146 | 2 | 131 | 1.08e-17 | 81.6 |
| Msa0483770 | MtrunA17_Chr7g0275891 | 31.646 | 158 | 100 | 3 | 24 | 176 | 9 | 163 | 1.53e-17 | 84.3 |
| Msa0483770 | MtrunA17_Chr4g0074401 | 32.520 | 123 | 80 | 1 | 24 | 146 | 21 | 140 | 2.24e-17 | 85.5 |
| Msa0483770 | MtrunA17_Chr1g0149851 | 33.065 | 124 | 80 | 1 | 24 | 147 | 9 | 129 | 2.27e-17 | 85.5 |
| Msa0483770 | MtrunA17_Chr4g0049741 | 55.357 | 56 | 25 | 0 | 486 | 541 | 94 | 149 | 1.68e-12 | 68.9 |
| Msa0483770 | MtrunA17_Chr3g0134461 | 32.258 | 124 | 82 | 1 | 24 | 147 | 12 | 133 | 1.71e-12 | 66.6 |
| Msa0483770 | MtrunA17_Chr3g0132751 | 57.143 | 49 | 21 | 0 | 492 | 540 | 123 | 171 | 1.35e-11 | 66.2 |
| Msa0483770 | MtrunA17_Chr4g0074421 | 36.364 | 77 | 46 | 1 | 70 | 146 | 2 | 75 | 1.77e-11 | 63.5 |
| Msa0483770 | MtrunA17_Chr5g0400241 | 29.134 | 127 | 84 | 3 | 17 | 142 | 10 | 131 | 3.03e-11 | 66.2 |
| Msa0483770 | MtrunA17_Chr7g0256551 | 26.174 | 149 | 90 | 3 | 17 | 146 | 2 | 149 | 4.98e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0483770 | AT5G61380.1 | 48.460 | 617 | 234 | 19 | 6 | 561 | 1 | 594 | 2.25e-164 | 481 |
| Msa0483770 | AT2G46790.3 | 42.188 | 128 | 74 | 0 | 18 | 145 | 31 | 158 | 7.74e-32 | 128 |
| Msa0483770 | AT2G46790.1 | 42.188 | 128 | 74 | 0 | 18 | 145 | 31 | 158 | 1.28e-31 | 128 |
| Msa0483770 | AT2G46790.1 | 69.565 | 46 | 14 | 0 | 499 | 544 | 416 | 461 | 2.91e-14 | 75.9 |
| Msa0483770 | AT5G24470.1 | 45.113 | 133 | 73 | 0 | 18 | 150 | 44 | 176 | 4.03e-31 | 127 |
| Msa0483770 | AT5G24470.1 | 55.357 | 56 | 25 | 0 | 488 | 543 | 497 | 552 | 1.49e-12 | 70.9 |
| Msa0483770 | AT5G60100.7 | 45.082 | 122 | 67 | 0 | 24 | 145 | 64 | 185 | 2.82e-28 | 117 |
| Msa0483770 | AT5G60100.6 | 45.082 | 122 | 67 | 0 | 24 | 145 | 64 | 185 | 2.82e-28 | 117 |
| Msa0483770 | AT5G60100.4 | 45.082 | 122 | 67 | 0 | 24 | 145 | 64 | 185 | 2.82e-28 | 117 |
| Msa0483770 | AT5G60100.5 | 45.082 | 122 | 67 | 0 | 24 | 145 | 64 | 185 | 5.49e-28 | 117 |
| Msa0483770 | AT5G60100.5 | 68.182 | 44 | 14 | 0 | 499 | 542 | 441 | 484 | 7.98e-13 | 71.2 |
| Msa0483770 | AT5G60100.3 | 45.082 | 122 | 67 | 0 | 24 | 145 | 64 | 185 | 5.49e-28 | 117 |
| Msa0483770 | AT5G60100.3 | 68.182 | 44 | 14 | 0 | 499 | 542 | 441 | 484 | 7.98e-13 | 71.2 |
| Msa0483770 | AT5G60100.1 | 45.082 | 122 | 67 | 0 | 24 | 145 | 64 | 185 | 5.49e-28 | 117 |
| Msa0483770 | AT5G60100.1 | 68.182 | 44 | 14 | 0 | 499 | 542 | 441 | 484 | 7.98e-13 | 71.2 |
| Msa0483770 | AT5G60100.2 | 45.082 | 122 | 67 | 0 | 24 | 145 | 64 | 185 | 1.61e-27 | 117 |
| Msa0483770 | AT5G60100.2 | 68.182 | 44 | 14 | 0 | 499 | 542 | 468 | 511 | 9.87e-13 | 71.2 |
| Msa0483770 | AT5G02810.1 | 41.406 | 128 | 75 | 0 | 18 | 145 | 72 | 199 | 6.36e-25 | 110 |
| Msa0483770 | AT5G02810.1 | 63.793 | 58 | 21 | 0 | 492 | 549 | 661 | 718 | 1.45e-15 | 80.5 |
| Msa0483770 | AT3G16857.2 | 35.714 | 126 | 78 | 1 | 22 | 147 | 35 | 157 | 4.80e-20 | 94.7 |
| Msa0483770 | AT3G16857.1 | 35.714 | 126 | 78 | 1 | 22 | 147 | 35 | 157 | 5.39e-20 | 94.4 |
| Msa0483770 | AT4G31920.1 | 35.537 | 121 | 75 | 1 | 24 | 144 | 17 | 134 | 5.32e-19 | 90.9 |
| Msa0483770 | AT2G25180.1 | 34.146 | 123 | 78 | 1 | 24 | 146 | 17 | 136 | 1.76e-18 | 89.4 |
| Msa0483770 | AT1G67710.1 | 33.333 | 123 | 79 | 1 | 24 | 146 | 11 | 130 | 6.02e-18 | 87.4 |
| Msa0483770 | AT2G01760.1 | 34.400 | 125 | 80 | 1 | 22 | 146 | 9 | 131 | 2.20e-16 | 81.6 |
| Msa0483770 | AT5G02810.2 | 63.793 | 58 | 21 | 0 | 492 | 549 | 517 | 574 | 9.70e-16 | 80.9 |
| Msa0483770 | AT2G46670.1 | 71.111 | 45 | 13 | 0 | 500 | 544 | 132 | 176 | 1.92e-15 | 75.1 |
| Msa0483770 | AT3G16857.3 | 39.326 | 89 | 51 | 1 | 59 | 147 | 2 | 87 | 4.76e-15 | 78.6 |
| Msa0483770 | AT2G46790.5 | 69.565 | 46 | 14 | 0 | 499 | 544 | 259 | 304 | 9.11e-15 | 75.9 |
| Msa0483770 | AT2G46790.4 | 69.565 | 46 | 14 | 0 | 499 | 544 | 259 | 304 | 9.11e-15 | 75.9 |
| Msa0483770 | AT2G46790.2 | 69.565 | 46 | 14 | 0 | 499 | 544 | 299 | 344 | 1.89e-14 | 75.5 |
| Msa0483770 | AT2G46790.2 | 63.415 | 41 | 15 | 0 | 105 | 145 | 1 | 41 | 1.29e-12 | 69.7 |
| Msa0483770 | AT3G62670.1 | 31.008 | 129 | 83 | 3 | 18 | 146 | 36 | 158 | 3.13e-14 | 75.5 |
| Msa0483770 | AT5G58080.1 | 34.091 | 132 | 81 | 3 | 16 | 145 | 8 | 135 | 4.13e-13 | 72.8 |
| Msa0483770 | AT2G01760.2 | 31.818 | 110 | 73 | 1 | 37 | 146 | 52 | 159 | 1.51e-12 | 70.1 |
| Msa0483770 | AT1G49190.1 | 27.419 | 124 | 87 | 1 | 26 | 149 | 36 | 156 | 2.41e-11 | 66.2 |
| Msa0483770 | AT1G49190.2 | 27.419 | 124 | 87 | 1 | 26 | 149 | 36 | 156 | 2.45e-11 | 67.0 |
Find 132 sgRNAs with CRISPR-Local
Find 416 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATATTCATTGGGTAATA+GGG | 0.232593 | 3_4:-541728 | None:intergenic |
| TTGAATAATAGTAAGAAAAT+TGG | 0.233291 | 3_4:+536310 | Msa0483770:CDS |
| GCACATATTCATTGGGTAAT+AGG | 0.254453 | 3_4:-541729 | None:intergenic |
| ATCCTTAGTTCGCTCTTCTT+TGG | 0.263156 | 3_4:-541065 | None:intergenic |
| ATTGTTGTCTCTGCATTAAT+TGG | 0.263416 | 3_4:+542158 | Msa0483770:three_prime_UTR |
| GAACAATAGGTCCCATTTCT+TGG | 0.266361 | 3_4:-541419 | None:intergenic |
| CGCTCACCTCTTGCTCTTGT+TGG | 0.270627 | 3_4:-539357 | None:intergenic |
| GGACAATGAACCCCATTTCT+TGG | 0.284413 | 3_4:-541500 | None:intergenic |
| TTGTACTCCACCTGCATCTT+TGG | 0.287125 | 3_4:+541337 | Msa0483770:CDS |
| ACTCCCGATGACAAATAATA+TGG | 0.320119 | 3_4:-541563 | None:intergenic |
| GGTTGTAAGCACATATTCAT+TGG | 0.352891 | 3_4:-541737 | None:intergenic |
| AGTCTTATACATCCAAGAAA+TGG | 0.355720 | 3_4:+541407 | Msa0483770:CDS |
| CAACCAGGTCAGATTCCTTC+AGG | 0.363330 | 3_4:+541755 | Msa0483770:CDS |
| AACTAAATCTTACTTATAAT+AGG | 0.364003 | 3_4:-537438 | None:intergenic |
| CAAAATTAAGTAAAGTTGAT+AGG | 0.368608 | 3_4:+541813 | Msa0483770:CDS |
| CATCAGTGTCATCGGAGAAC+AGG | 0.370393 | 3_4:-539291 | None:intergenic |
| GCGAACTAAGGATTGGGGTT+GGG | 0.374057 | 3_4:+541075 | Msa0483770:CDS |
| CGAACTAAGGATTGGGGTTG+GGG | 0.375308 | 3_4:+541076 | Msa0483770:CDS |
| TTCTGCGCAATTCTTTGTCT+CGG | 0.375322 | 3_4:-537413 | None:intergenic |
| CATTCTGATGCATGATCATC+TGG | 0.375477 | 3_4:-540174 | None:intergenic |
| TGTCTGATGCATCCAAGAAA+TGG | 0.381220 | 3_4:+541488 | Msa0483770:CDS |
| CAGCATGAACAATCCCTTCA+AGG | 0.386500 | 3_4:-541148 | None:intergenic |
| GTCTGATGCATCCAAGAAAT+GGG | 0.388638 | 3_4:+541489 | Msa0483770:CDS |
| CTCTTGAGATGTTGTTATCA+AGG | 0.389075 | 3_4:+536415 | Msa0483770:CDS |
| CTAATGAACTCTTAAATTTG+TGG | 0.392317 | 3_4:+537639 | Msa0483770:CDS |
| GGTGTTAATGTGGATCTTAA+TGG | 0.393979 | 3_4:+541971 | Msa0483770:CDS |
| ATCTTCATGCCCTTCTTCTT+CGG | 0.403681 | 3_4:-537375 | None:intergenic |
| TATCCATATTATTTGTCATC+GGG | 0.404835 | 3_4:+541560 | Msa0483770:CDS |
| CATATCGAGCTCAGAACAAT+AGG | 0.405798 | 3_4:-541432 | None:intergenic |
| TGCCTCTATTCCTTCTTCAA+TGG | 0.406096 | 3_4:+542132 | Msa0483770:three_prime_UTR |
| GATCCTTGATAGGATAATAT+AGG | 0.434563 | 3_4:-542109 | None:intergenic |
| AGAAGAGCGAACTAAGGATT+GGG | 0.437707 | 3_4:+541069 | Msa0483770:CDS |
| ATTGGCCATCACTTGCTATG+AGG | 0.439887 | 3_4:+542176 | Msa0483770:three_prime_UTR |
| ACCAGGTATACTATTGCTGC+TGG | 0.455033 | 3_4:-541294 | None:intergenic |
| AATAGAGGCAGATCCTTGAT+AGG | 0.457498 | 3_4:-542119 | None:intergenic |
| TTCCATTGAAGAAGGAATAG+AGG | 0.462169 | 3_4:-542134 | None:intergenic |
| GTTGTAAGCACATATTCATT+GGG | 0.463517 | 3_4:-541736 | None:intergenic |
| TCTGCGCAATTCTTTGTCTC+GGG | 0.465345 | 3_4:-537412 | None:intergenic |
| AACTTCCATCCTCACATGTA+AGG | 0.465807 | 3_4:-541180 | None:intergenic |
| TCATTTACTCCATGGACATC+AGG | 0.468519 | 3_4:-540201 | None:intergenic |
| AGAAGCACTATTCAAGAGAC+AGG | 0.475811 | 3_4:+539325 | Msa0483770:CDS |
| TGATACATTTGCGCCGATGA+AGG | 0.476546 | 3_4:-541602 | None:intergenic |
| CCCAGCAGCAATAGTATACC+TGG | 0.477013 | 3_4:+541293 | Msa0483770:CDS |
| CTCCAAAGAAGAGCGAACTA+AGG | 0.481928 | 3_4:+541063 | Msa0483770:CDS |
| ATTGAATATGATGAAAATGA+AGG | 0.483324 | 3_4:+542007 | Msa0483770:CDS |
| GTCTTATACATCCAAGAAAT+GGG | 0.483992 | 3_4:+541408 | Msa0483770:CDS |
| GTTAAATTATGACTTTGATC+TGG | 0.486159 | 3_4:+539228 | Msa0483770:CDS |
| AAGAAGAGCGAACTAAGGAT+TGG | 0.487567 | 3_4:+541068 | Msa0483770:CDS |
| TTGGCCATCACTTGCTATGA+GGG | 0.489175 | 3_4:+542177 | Msa0483770:three_prime_UTR |
| TCATGTCGTCGAAATGACTA+AGG | 0.490307 | 3_4:+542075 | Msa0483770:intron |
| GGAGTAAATGATCAGCGAAC+AGG | 0.494921 | 3_4:+540213 | Msa0483770:CDS |
| ATGTTAGATCTTTCACGCTC+AGG | 0.497470 | 3_4:-541521 | None:intergenic |
| TTTGGGGTATGGAGAGTGAA+GGG | 0.498907 | 3_4:+536281 | Msa0483770:exon |
| TCATGCCCTTCTTCTTCGGA+AGG | 0.501684 | 3_4:-537371 | None:intergenic |
| AAGAGTTCATTAGTGCGTAA+AGG | 0.501760 | 3_4:-537629 | None:intergenic |
| CTCTCAATAGATAAAGAACC+AGG | 0.507067 | 3_4:-541311 | None:intergenic |
| CTGTTTGTATTGTTATCGCT+AGG | 0.509038 | 3_4:-539262 | None:intergenic |
| GTTCCTATATTATCCTATCA+AGG | 0.509571 | 3_4:+542106 | Msa0483770:three_prime_UTR |
| GGTCAGTCATGGCCATCCTT+CGG | 0.511134 | 3_4:+541776 | Msa0483770:CDS |
| TGTGAGGCTTCCAAAGATGC+AGG | 0.515634 | 3_4:-541347 | None:intergenic |
| TCATGTTATGATGCCTTCAT+CGG | 0.517737 | 3_4:+541589 | Msa0483770:CDS |
| AGTTGGCCTTCCGAAGAAGA+AGG | 0.517951 | 3_4:+537365 | Msa0483770:CDS |
| AGAAAATTAGGTATGTCAAT+CGG | 0.521151 | 3_4:+541891 | Msa0483770:CDS |
| CAGCATGATTCTGCAGGTCG+TGG | 0.521808 | 3_4:-541634 | None:intergenic |
| AGGATAATATAGGAACTGAT+TGG | 0.522297 | 3_4:-542099 | None:intergenic |
| TTCGCTGATCATTTACTCCA+TGG | 0.523141 | 3_4:-540209 | None:intergenic |
| GGAAACTATAGATCTCATAC+TGG | 0.527599 | 3_4:+537338 | Msa0483770:CDS |
| GTTGTTAAGTGCTTGAGACT+CGG | 0.531794 | 3_4:+537584 | Msa0483770:CDS |
| GACATCATTCCGGTGGTATG+AGG | 0.533530 | 3_4:-541701 | None:intergenic |
| CATGAAGCATGTGCTCAACA+AGG | 0.536975 | 3_4:+541206 | Msa0483770:CDS |
| TTATCCATATTATTTGTCAT+CGG | 0.538736 | 3_4:+541559 | Msa0483770:CDS |
| TGCTAATGCTGATGCTGTTG+AGG | 0.539629 | 3_4:+540146 | Msa0483770:CDS |
| AGCGAACTAAGGATTGGGGT+TGG | 0.541428 | 3_4:+541074 | Msa0483770:CDS |
| GATCTCATACTGGCTGAAGT+TGG | 0.542729 | 3_4:+537348 | Msa0483770:CDS |
| ATAGGGGTAGGACATCATTC+CGG | 0.544576 | 3_4:-541711 | None:intergenic |
| CCAGGTATACTATTGCTGCT+GGG | 0.549234 | 3_4:-541293 | None:intergenic |
| CGAGTTATCATCAGTGTCAT+CGG | 0.550154 | 3_4:-539299 | None:intergenic |
| ATGAATATGTGCTTACAACC+AGG | 0.553880 | 3_4:+541740 | Msa0483770:CDS |
| GAATGTCAGCCTGATGTCCA+TGG | 0.557310 | 3_4:+540192 | Msa0483770:CDS |
| TGTGGACGCACATGTGGAGA+AGG | 0.558944 | 3_4:+537657 | Msa0483770:CDS |
| TTGAATATGATGAAAATGAA+GGG | 0.559631 | 3_4:+542008 | Msa0483770:CDS |
| ATGTACCAGCATGATTCTGC+AGG | 0.560138 | 3_4:-541640 | None:intergenic |
| CACGACCTGCAGAATCATGC+TGG | 0.560739 | 3_4:+541635 | Msa0483770:CDS |
| TGATGCACTGAATGCAGAGA+AGG | 0.561148 | 3_4:+537317 | Msa0483770:CDS |
| ATCAGTCCAACAAGAGCAAG+AGG | 0.563155 | 3_4:+539351 | Msa0483770:CDS |
| TCGGATGAACTTCCGAAGGA+TGG | 0.565075 | 3_4:-541788 | None:intergenic |
| ATCAGTGTCATCGGAGAACA+GGG | 0.565153 | 3_4:-539290 | None:intergenic |
| TAAATTTGTGGACGCACATG+TGG | 0.565713 | 3_4:+537651 | Msa0483770:CDS |
| TGAAAGACGGCCTCGTGTGA+GGG | 0.569464 | 3_4:+541925 | Msa0483770:CDS |
| GAGCTAGAGATTACTCTCCC+AGG | 0.571790 | 3_4:+542030 | Msa0483770:exon |
| AATAGTAAGAAAATTGGTGA+TGG | 0.572128 | 3_4:+536316 | Msa0483770:CDS |
| TGATTCAAATACCTCTCAAG+AGG | 0.572978 | 3_4:+536381 | Msa0483770:CDS |
| TGCTTCGGATGAACTTCCGA+AGG | 0.577350 | 3_4:-541792 | None:intergenic |
| ATTCATTGGGTAATAGGGGT+AGG | 0.578636 | 3_4:-541723 | None:intergenic |
| AGATTCCTTCAGGTCAGTCA+TGG | 0.579147 | 3_4:+541765 | Msa0483770:CDS |
| CAGTTTGTCAGTAAGATGAA+TGG | 0.579522 | 3_4:+541950 | Msa0483770:CDS |
| AGCTAGAGATTACTCTCCCA+GGG | 0.581473 | 3_4:+542031 | Msa0483770:exon |
| CAGGTATACTATTGCTGCTG+GGG | 0.581806 | 3_4:-541292 | None:intergenic |
| GGAAACAACTTGCTGAAAGA+CGG | 0.584344 | 3_4:+541912 | Msa0483770:CDS |
| CTGAAAGACGGCCTCGTGTG+AGG | 0.586756 | 3_4:+541924 | Msa0483770:CDS |
| GAAAGACGGCCTCGTGTGAG+GGG | 0.590286 | 3_4:+541926 | Msa0483770:CDS |
| TGCCGCCTTACATGTGAGGA+TGG | 0.593042 | 3_4:+541175 | Msa0483770:CDS |
| GATGGCCATGACTGACCTGA+AGG | 0.597115 | 3_4:-541770 | None:intergenic |
| GTTGGCCTTCCGAAGAAGAA+GGG | 0.599234 | 3_4:+537366 | Msa0483770:CDS |
| ACATATTCATTGGGTAATAG+GGG | 0.603859 | 3_4:-541727 | None:intergenic |
| ATGAAGCATGTGCTCAACAA+GGG | 0.604325 | 3_4:+541207 | Msa0483770:CDS |
| AGTGATGTCTGCACAAGATG+AGG | 0.604714 | 3_4:+537553 | Msa0483770:intron |
| TCATCATATTCAATGGAAGG+AGG | 0.605016 | 3_4:-541998 | None:intergenic |
| TAAGATGAATGGTGTTAATG+TGG | 0.608624 | 3_4:+541961 | Msa0483770:CDS |
| TAATTGATGAGGGTGTACAC+TGG | 0.616873 | 3_4:-542208 | None:intergenic |
| TTGTTGATAGAAGTAAAGTG+AGG | 0.622065 | 3_4:+536341 | Msa0483770:CDS |
| CAAGGCGGTCCTCATACCAC+CGG | 0.623009 | 3_4:+541692 | Msa0483770:CDS |
| GCAACCCTCATAGCAAGTGA+TGG | 0.627606 | 3_4:-542181 | None:intergenic |
| CACTACAATCATGTTCCACA+AGG | 0.630620 | 3_4:+541674 | Msa0483770:CDS |
| GGACGCACATGTGGAGAAGG+AGG | 0.632559 | 3_4:+537660 | Msa0483770:CDS |
| GTGGTATGAGGACCGCCTTG+TGG | 0.638168 | 3_4:-541689 | None:intergenic |
| TGACCTGAAGGAATCTGACC+TGG | 0.642802 | 3_4:-541758 | None:intergenic |
| CATGTCGTCGAAATGACTAA+GGG | 0.645701 | 3_4:+542076 | Msa0483770:intron |
| CATGTGGAGAAGGAGGCGCA+TGG | 0.648174 | 3_4:+537667 | Msa0483770:CDS |
| GAGGCTTCCAAAGATGCAGG+TGG | 0.655405 | 3_4:-541344 | None:intergenic |
| TTCCATCCTCACATGTAAGG+CGG | 0.658020 | 3_4:-541177 | None:intergenic |
| ACAAACTGTCCCCTCACACG+AGG | 0.662346 | 3_4:-541935 | None:intergenic |
| TGAAGCATGTGCTCAACAAG+GGG | 0.671878 | 3_4:+541208 | Msa0483770:CDS |
| TACAATCATGTTCCACAAGG+CGG | 0.678482 | 3_4:+541677 | Msa0483770:CDS |
| GGGGTAGGACATCATTCCGG+TGG | 0.679136 | 3_4:-541708 | None:intergenic |
| TCTGATGCATCCAAGAAATG+GGG | 0.684504 | 3_4:+541490 | Msa0483770:CDS |
| TCTGATGCATGATCATCTGG+AGG | 0.693536 | 3_4:-540171 | None:intergenic |
| GAAGAGCGAACTAAGGATTG+GGG | 0.699832 | 3_4:+541070 | Msa0483770:CDS |
| TCTCAAGCACTTAACAACAA+CGG | 0.708874 | 3_4:-537579 | None:intergenic |
| TAAGTGCTTGAGACTCGGAG+CGG | 0.719512 | 3_4:+537589 | Msa0483770:CDS |
| ACAATGCCGCCTTACATGTG+AGG | 0.719839 | 3_4:+541171 | Msa0483770:CDS |
| AGTGTCATCGGAGAACAGGG+TGG | 0.756718 | 3_4:-539287 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAGTGATTTTATTTTTTT+GGG | + | chr3_4:536264-536283 | Msa0483770:five_prime_UTR | 10.0% |
| !!! | TATTTTTAAAAAATTTGTAC+TGG | - | chr3_4:538009-538028 | None:intergenic | 10.0% |
| !!! | TATTTTTTACATTATATTCA+AGG | - | chr3_4:538217-538236 | None:intergenic | 10.0% |
| !!! | TCATTATTTGTTTAATTTTA+TGG | - | chr3_4:540617-540636 | None:intergenic | 10.0% |
| !!! | AAACAAATAATGATTTATTT+TGG | + | chr3_4:540624-540643 | Msa0483770:intron | 10.0% |
| !!! | GTAAAGTGATTTTATTTTTT+TGG | + | chr3_4:536263-536282 | Msa0483770:five_prime_UTR | 15.0% |
| !!! | AAAGTGATTTTATTTTTTTG+GGG | + | chr3_4:536265-536284 | Msa0483770:five_prime_UTR | 15.0% |
| !! | TTGAATAATAGTAAGAAAAT+TGG | + | chr3_4:536310-536329 | Msa0483770:CDS | 15.0% |
| !! | TTAATTTCATTCTTTAATGT+TGG | + | chr3_4:536767-536786 | Msa0483770:intron | 15.0% |
| !!! | TTTTTCTATCAATTAAAAAC+TGG | + | chr3_4:537151-537170 | Msa0483770:intron | 15.0% |
| !! | AACTAAATCTTACTTATAAT+AGG | - | chr3_4:537441-537460 | None:intergenic | 15.0% |
| !!! | ATTTAACTCAAGAATTTTAT+TGG | - | chr3_4:537484-537503 | None:intergenic | 15.0% |
| !! | TTCTAAATTTCTAAATACAA+TGG | - | chr3_4:537871-537890 | None:intergenic | 15.0% |
| !! | ATATTTCATATCAAATCATA+GGG | + | chr3_4:538317-538336 | Msa0483770:intron | 15.0% |
| !! | AATAATAAATGCTTATGAAA+AGG | + | chr3_4:538602-538621 | Msa0483770:intron | 15.0% |
| !! | ATAATAAATGCTTATGAAAA+GGG | + | chr3_4:538603-538622 | Msa0483770:intron | 15.0% |
| !!! | AGTTTAATTTAAGAAATCTT+CGG | - | chr3_4:539465-539484 | None:intergenic | 15.0% |
| !! | AGATTTCTTAAATTAAACTT+TGG | + | chr3_4:539466-539485 | Msa0483770:intron | 15.0% |
| !! | AAAAAATCTGTTGAAAATTT+GGG | - | chr3_4:540930-540949 | None:intergenic | 15.0% |
| !! | TAAAAAATCTGTTGAAAATT+TGG | - | chr3_4:540931-540950 | None:intergenic | 15.0% |
| !!! | AAATTTTCAACAGATTTTTT+AGG | + | chr3_4:540930-540949 | Msa0483770:intron | 15.0% |
| !! | GTGAAAAACAATAAAAGATA+GGG | - | chr3_4:536810-536829 | None:intergenic | 20.0% |
| !! | AATATCAGAGTATAAACATT+TGG | + | chr3_4:537122-537141 | Msa0483770:intron | 20.0% |
| !!! | TATTGATTTGTTTTATTCCT+AGG | + | chr3_4:537180-537199 | Msa0483770:intron | 20.0% |
| !!! | ATTGATTTGTTTTATTCCTA+GGG | + | chr3_4:537181-537200 | Msa0483770:intron | 20.0% |
| !! | AGTTAAATCAAATTATGTTC+TGG | + | chr3_4:537496-537515 | Msa0483770:intron | 20.0% |
| !! | AAACATTGTGCAATATTAAA+TGG | + | chr3_4:537780-537799 | Msa0483770:intron | 20.0% |
| !! | GTGATAACAAAAAATGAAAA+TGG | - | chr3_4:537911-537930 | None:intergenic | 20.0% |
| !! | AAAAATTTGTACTGGAAATA+GGG | - | chr3_4:538001-538020 | None:intergenic | 20.0% |
| !! | AAAAAATTTGTACTGGAAAT+AGG | - | chr3_4:538002-538021 | None:intergenic | 20.0% |
| !!! | TGAGTTTGAATTAATTTGAA+AGG | + | chr3_4:538130-538149 | Msa0483770:intron | 20.0% |
| !! | CTTTACTTATCATAATCATT+TGG | + | chr3_4:538246-538265 | Msa0483770:intron | 20.0% |
| !! | CTATGATTTGATATGAAATA+TGG | - | chr3_4:538318-538337 | None:intergenic | 20.0% |
| !! | CATATTTCATATCAAATCAT+AGG | + | chr3_4:538316-538335 | Msa0483770:intron | 20.0% |
| !! | TATTTCATATCAAATCATAG+GGG | + | chr3_4:538318-538337 | Msa0483770:intron | 20.0% |
| !! | TTTCTTAAGAAATGTGAAAA+AGG | - | chr3_4:538445-538464 | None:intergenic | 20.0% |
| !! | ACAAGATAGTAGTATTAATT+AGG | + | chr3_4:538562-538581 | Msa0483770:intron | 20.0% |
| !! | CAAGATAGTAGTATTAATTA+GGG | + | chr3_4:538563-538582 | Msa0483770:intron | 20.0% |
| !! | AAGATAGTAGTATTAATTAG+GGG | + | chr3_4:538564-538583 | Msa0483770:intron | 20.0% |
| !! | TAATAAATGCTTATGAAAAG+GGG | + | chr3_4:538604-538623 | Msa0483770:intron | 20.0% |
| !! | TATGAGGTCAATAATTATAA+GGG | - | chr3_4:538747-538766 | None:intergenic | 20.0% |
| !!! | AGATTTTCATATGAACTTAT+GGG | + | chr3_4:539011-539030 | Msa0483770:intron | 20.0% |
| !! | ATCAACCATACAATATAATA+TGG | + | chr3_4:539035-539054 | Msa0483770:intron | 20.0% |
| !! | ACATTCCATATTATATTGTA+TGG | - | chr3_4:539043-539062 | None:intergenic | 20.0% |
| !! | ATATAATATGGAATGTAGAA+TGG | + | chr3_4:539047-539066 | Msa0483770:intron | 20.0% |
| !!! | AATAGCTTTTATATTTTTGC+TGG | + | chr3_4:539179-539198 | Msa0483770:intron | 20.0% |
| !!! | CATAGATTAATCAATTTTCA+AGG | - | chr3_4:539440-539459 | None:intergenic | 20.0% |
| !! | ATTGCATTTACAAAGAAAAA+GGG | - | chr3_4:539565-539584 | None:intergenic | 20.0% |
| !! | TATTGCATTTACAAAGAAAA+AGG | - | chr3_4:539566-539585 | None:intergenic | 20.0% |
| !!! | TATGATAAATTGTTGATTAC+TGG | + | chr3_4:539638-539657 | Msa0483770:intron | 20.0% |
| !!! | TATGTATGTTCCTTTAAAAA+TGG | - | chr3_4:539678-539697 | None:intergenic | 20.0% |
| !!! | GCAGCTTAAAATTTATTTTA+GGG | - | chr3_4:539731-539750 | None:intergenic | 20.0% |
| !!! | TGCAGCTTAAAATTTATTTT+AGG | - | chr3_4:539732-539751 | None:intergenic | 20.0% |
| !! | ACATTAATACAAAAACAAAG+AGG | + | chr3_4:539845-539864 | Msa0483770:intron | 20.0% |
| !! | AAAAATCTGTTGAAAATTTG+GGG | - | chr3_4:540929-540948 | None:intergenic | 20.0% |
| !! | TTATCCATATTATTTGTCAT+CGG | + | chr3_4:541559-541578 | Msa0483770:CDS | 20.0% |
| !!! | AACTTTACTTAATTTTGCTT+CGG | - | chr3_4:541810-541829 | None:intergenic | 20.0% |
| !!! | CAAAATTAAGTAAAGTTGAT+AGG | + | chr3_4:541813-541832 | Msa0483770:CDS | 20.0% |
| !!! | TTCATTTTCATCATATTCAA+TGG | - | chr3_4:542008-542027 | None:intergenic | 20.0% |
| !! | ATTGAATATGATGAAAATGA+AGG | + | chr3_4:542007-542026 | Msa0483770:CDS | 20.0% |
| !! | TTGAATATGATGAAAATGAA+GGG | + | chr3_4:542008-542027 | Msa0483770:CDS | 20.0% |
| !!! | GATTTTATTTTTTTGGGGTA+TGG | + | chr3_4:536270-536289 | Msa0483770:exon | 25.0% |
| ! | AATAGTAAGAAAATTGGTGA+TGG | + | chr3_4:536316-536335 | Msa0483770:CDS | 25.0% |
| ! | CCATTCATAATCAACAAAAT+AGG | - | chr3_4:536490-536509 | None:intergenic | 25.0% |
| !!! | CCTATTTTGTTGATTATGAA+TGG | + | chr3_4:536487-536506 | Msa0483770:intron | 25.0% |
| ! | ACTAAAATTATCCTAGAGAA+TGG | - | chr3_4:536743-536762 | None:intergenic | 25.0% |
| ! | GGTGAAAAACAATAAAAGAT+AGG | - | chr3_4:536811-536830 | None:intergenic | 25.0% |
| !!! | TTTATTGTTTTTCACCTTTG+AGG | + | chr3_4:536815-536834 | Msa0483770:intron | 25.0% |
| ! | TAAACATTCTAGATTCTCAT+CGG | + | chr3_4:536877-536896 | Msa0483770:intron | 25.0% |
| !! | ATATTGATTAATTTCCACCA+TGG | + | chr3_4:536926-536945 | Msa0483770:intron | 25.0% |
| ! | CAAAAATCCATCATATAAAC+AGG | - | chr3_4:537037-537056 | None:intergenic | 25.0% |
| !!! | CTGTTTATATGATGGATTTT+TGG | + | chr3_4:537035-537054 | Msa0483770:intron | 25.0% |
| !! | GTATAACAGTGTCTAAAATT+TGG | + | chr3_4:537094-537113 | Msa0483770:intron | 25.0% |
| !!! | TTGATTTGTTTTATTCCTAG+GGG | + | chr3_4:537182-537201 | Msa0483770:intron | 25.0% |
| ! | CTAATGAACTCTTAAATTTG+TGG | + | chr3_4:537639-537658 | Msa0483770:CDS | 25.0% |
| ! | AAGATTCATAGATATGAAGT+TGG | - | chr3_4:537703-537722 | None:intergenic | 25.0% |
| !!! | AGTTGGTGACAAATTAATTA+TGG | - | chr3_4:537748-537767 | None:intergenic | 25.0% |
| !! | GTTAGTGAGTCTTATATTAA+GGG | - | chr3_4:538364-538383 | None:intergenic | 25.0% |
| ! | TTTAATACACATACAAGCAA+AGG | - | chr3_4:538521-538540 | None:intergenic | 25.0% |
| ! | GGACGAAAATAAAATCAAAT+GGG | + | chr3_4:538638-538657 | Msa0483770:intron | 25.0% |
| !!! | TGTATATTAGCTTTTCGAAT+TGG | + | chr3_4:538721-538740 | Msa0483770:intron | 25.0% |
| ! | GTATGAGGTCAATAATTATA+AGG | - | chr3_4:538748-538767 | None:intergenic | 25.0% |
| !! | GATTTTCATAGACATAAAGA+TGG | - | chr3_4:538885-538904 | None:intergenic | 25.0% |
| !!! | GACTTTTTCAGATTATAAGT+TGG | + | chr3_4:538959-538978 | Msa0483770:intron | 25.0% |
| !! | GAGATTTTCATATGAACTTA+TGG | + | chr3_4:539010-539029 | Msa0483770:intron | 25.0% |
| !! | GATTTTCATATGAACTTATG+GGG | + | chr3_4:539012-539031 | Msa0483770:intron | 25.0% |
| !! | ATTTCAATTTGAAATCAGGA+AGG | - | chr3_4:539162-539181 | None:intergenic | 25.0% |
| !! | AGCTATTTCAATTTGAAATC+AGG | - | chr3_4:539166-539185 | None:intergenic | 25.0% |
| ! | GTTAAATTATGACTTTGATC+TGG | + | chr3_4:539228-539247 | Msa0483770:CDS | 25.0% |
| !! | TTATCATACCAATAACTTGT+GGG | - | chr3_4:539626-539645 | None:intergenic | 25.0% |
| ! | TTTATCATACCAATAACTTG+TGG | - | chr3_4:539627-539646 | None:intergenic | 25.0% |
| !!! | ATGCAAATGACCATTTTTAA+AGG | + | chr3_4:539665-539684 | Msa0483770:intron | 25.0% |
| ! | TAATACAAAAACAAAGAGGA+AGG | + | chr3_4:539849-539868 | Msa0483770:intron | 25.0% |
| ! | AATACAAAAACAAAGAGGAA+GGG | + | chr3_4:539850-539869 | Msa0483770:intron | 25.0% |
| !! | TTAGCATTGAAGTTATATAG+TGG | + | chr3_4:540288-540307 | Msa0483770:intron | 25.0% |
| !! | AAGTTATATAGTGGAATTGA+TGG | + | chr3_4:540297-540316 | Msa0483770:intron | 25.0% |
| ! | ATGAAACAGAATTGCTTAAA+GGG | + | chr3_4:540393-540412 | Msa0483770:intron | 25.0% |
| !! | TATTTTCTCTTCTCTTAATC+CGG | + | chr3_4:540524-540543 | Msa0483770:intron | 25.0% |
| ! | TGGAATTCAATAACTAGAAT+GGG | - | chr3_4:540597-540616 | None:intergenic | 25.0% |
| ! | ATGGAATTCAATAACTAGAA+TGG | - | chr3_4:540598-540617 | None:intergenic | 25.0% |
| ! | AGATTAGAAAGTAGAAACTA+TGG | - | chr3_4:540747-540766 | None:intergenic | 25.0% |
| ! | TTCTACTTTCTAATCTGAAA+TGG | + | chr3_4:540751-540770 | Msa0483770:intron | 25.0% |
| !! | ATAAAATTTTATTCAGCCTC+AGG | - | chr3_4:540957-540976 | None:intergenic | 25.0% |
| ! | TCAGAGAGAACAATTAAAAA+TGG | - | chr3_4:541004-541023 | None:intergenic | 25.0% |
| ! | TATCCATATTATTTGTCATC+GGG | + | chr3_4:541560-541579 | Msa0483770:CDS | 25.0% |
| !!! | GCTGTTTTGATAAGAAAATT+AGG | + | chr3_4:541879-541898 | Msa0483770:CDS | 25.0% |
| ! | AGAAAATTAGGTATGTCAAT+CGG | + | chr3_4:541891-541910 | Msa0483770:CDS | 25.0% |
| !! | TTTTCATCATATTCAATGGA+AGG | - | chr3_4:542004-542023 | None:intergenic | 25.0% |
| ! | TTGTTGATAGAAGTAAAGTG+AGG | + | chr3_4:536341-536360 | Msa0483770:CDS | 30.0% |
| TGTTAGCCATATTTGTATGT+TGG | + | chr3_4:536596-536615 | Msa0483770:intron | 30.0% | |
| ! | TTTTCCTAAAACCTTGATTG+TGG | - | chr3_4:536637-536656 | None:intergenic | 30.0% |
| !!! | ACAATCAAGGTTTTAGGAAA+AGG | + | chr3_4:536636-536655 | Msa0483770:intron | 30.0% |
| CACAAATACATCAAAAACCT+CGG | - | chr3_4:536671-536690 | None:intergenic | 30.0% | |
| AAAATTATCCTAGAGAATGG+CGG | - | chr3_4:536740-536759 | None:intergenic | 30.0% | |
| AAACATTCTAGATTCTCATC+GGG | + | chr3_4:536878-536897 | Msa0483770:intron | 30.0% | |
| ! | ATAGGTGTTGCAATTTATGA+TGG | - | chr3_4:536980-536999 | None:intergenic | 30.0% |
| !!! | TTATATGATGGATTTTTGGC+TGG | + | chr3_4:537039-537058 | Msa0483770:intron | 30.0% |
| CACTGTTATACTGTTATCAA+TGG | - | chr3_4:537085-537104 | None:intergenic | 30.0% | |
| !!! | TGATTTGTTTTATTCCTAGG+GGG | + | chr3_4:537183-537202 | Msa0483770:intron | 30.0% |
| AGATGTTCAAAACATTGATG+AGG | - | chr3_4:537523-537542 | None:intergenic | 30.0% | |
| GCAATATTAAATGGATGTAG+AGG | + | chr3_4:537789-537808 | Msa0483770:intron | 30.0% | |
| TTTAAATACTGACAATCTGC+AGG | - | chr3_4:538097-538116 | None:intergenic | 30.0% | |
| TTCAAACTCACATTTGCATA+AGG | - | chr3_4:538120-538139 | None:intergenic | 30.0% | |
| ATCATTTGGTCAATCTTGTA+TGG | + | chr3_4:538260-538279 | Msa0483770:intron | 30.0% | |
| ! | GGTTAGTGAGTCTTATATTA+AGG | - | chr3_4:538365-538384 | None:intergenic | 30.0% |
| TTTCTTAATACCCATGAATC+AGG | - | chr3_4:538386-538405 | None:intergenic | 30.0% | |
| AGAAATGTGAAAAAGGCAAT+GGG | - | chr3_4:538438-538457 | None:intergenic | 30.0% | |
| AAGAAATGTGAAAAAGGCAA+TGG | - | chr3_4:538439-538458 | None:intergenic | 30.0% | |
| ! | TATTAATTAGGGGTATGCTT+AGG | + | chr3_4:538574-538593 | Msa0483770:intron | 30.0% |
| ATGAAAAGGGGTTTACATTT+AGG | + | chr3_4:538616-538635 | Msa0483770:intron | 30.0% | |
| TGAAAAGGGGTTTACATTTA+GGG | + | chr3_4:538617-538636 | Msa0483770:intron | 30.0% | |
| GGGACGAAAATAAAATCAAA+TGG | + | chr3_4:538637-538656 | Msa0483770:intron | 30.0% | |
| AATCACATAATGCAAGTATG+AGG | - | chr3_4:538763-538782 | None:intergenic | 30.0% | |
| ! | TACGAAAGGGTCTTATATAT+AGG | + | chr3_4:538807-538826 | Msa0483770:intron | 30.0% |
| ! | ACGAAAGGGTCTTATATATA+GGG | + | chr3_4:538808-538827 | Msa0483770:intron | 30.0% |
| ! | TATCATACCAATAACTTGTG+GGG | - | chr3_4:539625-539644 | None:intergenic | 30.0% |
| !!! | TATTTTAGGGCAACTAATTC+AGG | - | chr3_4:539718-539737 | None:intergenic | 30.0% |
| TTAGCAATAGTAGACTGAAA+AGG | - | chr3_4:540132-540151 | None:intergenic | 30.0% | |
| CATGAAACAGAATTGCTTAA+AGG | + | chr3_4:540392-540411 | Msa0483770:intron | 30.0% | |
| ! | AACAATACTTTGGAAGTAGT+TGG | - | chr3_4:540567-540586 | None:intergenic | 30.0% |
| ACATAAATTGCCAAAAAGGT+GGG | - | chr3_4:540664-540683 | None:intergenic | 30.0% | |
| ACATGTAACTGAATTACTTG+TGG | + | chr3_4:540702-540721 | Msa0483770:intron | 30.0% | |
| ! | ATTTCCAACAAAATCCCTTT+TGG | - | chr3_4:540784-540803 | None:intergenic | 30.0% |
| ATGCTAAAAAGAAACCTTGA+AGG | + | chr3_4:541134-541153 | Msa0483770:CDS | 30.0% | |
| TGCTAAAAAGAAACCTTGAA+GGG | + | chr3_4:541135-541154 | Msa0483770:CDS | 30.0% | |
| ! | GCAAATTTTCTTCTTCGTAA+CGG | - | chr3_4:541379-541398 | None:intergenic | 30.0% |
| ! | AGTCTTATACATCCAAGAAA+TGG | + | chr3_4:541407-541426 | Msa0483770:CDS | 30.0% |
| GTCTTATACATCCAAGAAAT+GGG | + | chr3_4:541408-541427 | Msa0483770:CDS | 30.0% | |
| ACATATTCATTGGGTAATAG+GGG | - | chr3_4:541730-541749 | None:intergenic | 30.0% | |
| CACATATTCATTGGGTAATA+GGG | - | chr3_4:541731-541750 | None:intergenic | 30.0% | |
| GTTGTAAGCACATATTCATT+GGG | - | chr3_4:541739-541758 | None:intergenic | 30.0% | |
| ! | TAAGATGAATGGTGTTAATG+TGG | + | chr3_4:541961-541980 | Msa0483770:CDS | 30.0% |
| AGGATAATATAGGAACTGAT+TGG | - | chr3_4:542102-542121 | None:intergenic | 30.0% | |
| GTTCCTATATTATCCTATCA+AGG | + | chr3_4:542106-542125 | Msa0483770:three_prime_UTR | 30.0% | |
| GATCCTTGATAGGATAATAT+AGG | - | chr3_4:542112-542131 | None:intergenic | 30.0% | |
| ! | CAACAATTTTCCATTGAAGA+AGG | - | chr3_4:542145-542164 | None:intergenic | 30.0% |
| ATTGTTGTCTCTGCATTAAT+TGG | + | chr3_4:542158-542177 | Msa0483770:three_prime_UTR | 30.0% | |
| TGATTCAAATACCTCTCAAG+AGG | + | chr3_4:536381-536400 | Msa0483770:CDS | 35.0% | |
| AAGTGTAAAAACCTCTTGAG+AGG | - | chr3_4:536395-536414 | None:intergenic | 35.0% | |
| CTCTTGAGATGTTGTTATCA+AGG | + | chr3_4:536415-536434 | Msa0483770:CDS | 35.0% | |
| TCAACCATTACATAACACCA+TGG | - | chr3_4:536946-536965 | None:intergenic | 35.0% | |
| AGAAACATGGTAGGTTTGAT+AGG | - | chr3_4:536998-537017 | None:intergenic | 35.0% | |
| GGAAACTATAGATCTCATAC+TGG | + | chr3_4:537338-537357 | Msa0483770:CDS | 35.0% | |
| TCTCAAGCACTTAACAACAA+CGG | - | chr3_4:537582-537601 | None:intergenic | 35.0% | |
| AAGAGTTCATTAGTGCGTAA+AGG | - | chr3_4:537632-537651 | None:intergenic | 35.0% | |
| TGTTTACAGACACAGTAAGT+TGG | - | chr3_4:537765-537784 | None:intergenic | 35.0% | |
| ATGTAGAGGACTAACTAACT+TGG | + | chr3_4:537803-537822 | Msa0483770:intron | 35.0% | |
| AAGTTGACAGAACAAAACGA+AGG | - | chr3_4:537836-537855 | None:intergenic | 35.0% | |
| TCTAAATACAATGGTTGCGA+TGG | - | chr3_4:537862-537881 | None:intergenic | 35.0% | |
| GTTGTGAGATATTAGATGAG+AGG | + | chr3_4:538174-538193 | Msa0483770:intron | 35.0% | |
| TCAATCTTGTATGGAGTCAT+AGG | + | chr3_4:538269-538288 | Msa0483770:intron | 35.0% | |
| CAATCTTGTATGGAGTCATA+GGG | + | chr3_4:538270-538289 | Msa0483770:intron | 35.0% | |
| AATCTTGTATGGAGTCATAG+GGG | + | chr3_4:538271-538290 | Msa0483770:intron | 35.0% | |
| TGATATGAAATATGGCTTCC+AGG | - | chr3_4:538310-538329 | None:intergenic | 35.0% | |
| GTCTTATATTAAGGGACAGA+GGG | - | chr3_4:538356-538375 | None:intergenic | 35.0% | |
| ! | AGTCTTATATTAAGGGACAG+AGG | - | chr3_4:538357-538376 | None:intergenic | 35.0% |
| TCAAATGGGTGCTTAGATAT+AGG | + | chr3_4:538652-538671 | Msa0483770:intron | 35.0% | |
| CAAATGGGTGCTTAGATATA+GGG | + | chr3_4:538653-538672 | Msa0483770:intron | 35.0% | |
| AGCAAGCAATAAACTTGTCA+GGG | + | chr3_4:538697-538716 | Msa0483770:intron | 35.0% | |
| TATCCACCAATACTTACGAA+AGG | + | chr3_4:538793-538812 | Msa0483770:intron | 35.0% | |
| ATCCACCAATACTTACGAAA+GGG | + | chr3_4:538794-538813 | Msa0483770:intron | 35.0% | |
| TAAGACCCTTTCGTAAGTAT+TGG | - | chr3_4:538802-538821 | None:intergenic | 35.0% | |
| GTCTTATATATAGGGACAGA+AGG | + | chr3_4:538816-538835 | Msa0483770:intron | 35.0% | |
| GTACTCTCTTGAACATTTCT+TGG | - | chr3_4:538863-538882 | None:intergenic | 35.0% | |
| AAACTGACGTCAATTGTAGT+TGG | + | chr3_4:538905-538924 | Msa0483770:intron | 35.0% | |
| AACTGACGTCAATTGTAGTT+GGG | + | chr3_4:538906-538925 | Msa0483770:intron | 35.0% | |
| CATATGAAAATCTCCTGTGA+AGG | - | chr3_4:539004-539023 | None:intergenic | 35.0% | |
| !! | TTATATTTTTGCTGGCAGCT+TGG | + | chr3_4:539187-539206 | Msa0483770:intron | 35.0% |
| CTGTTTGTATTGTTATCGCT+AGG | - | chr3_4:539265-539284 | None:intergenic | 35.0% | |
| !! | GTTTCTAGTTTCTACACGAT+TGG | - | chr3_4:539923-539942 | None:intergenic | 35.0% |
| ATGTAGCTGGGTGAATAAAA+AGG | - | chr3_4:540008-540027 | None:intergenic | 35.0% | |
| TCATTATGCAGTATGTAGCT+GGG | - | chr3_4:540020-540039 | None:intergenic | 35.0% | |
| ATCATTATGCAGTATGTAGC+TGG | - | chr3_4:540021-540040 | None:intergenic | 35.0% | |
| AAACAGAATTGCTTAAAGGG+AGG | + | chr3_4:540396-540415 | Msa0483770:intron | 35.0% | |
| AACAGAATTGCTTAAAGGGA+GGG | + | chr3_4:540397-540416 | Msa0483770:intron | 35.0% | |
| TAGCAAAATAGTTGGAAGGA+GGG | + | chr3_4:540461-540480 | Msa0483770:intron | 35.0% | |
| GGGTTGTTCTAACAATACTT+TGG | - | chr3_4:540577-540596 | None:intergenic | 35.0% | |
| CATAAATTGCCAAAAAGGTG+GGG | - | chr3_4:540663-540682 | None:intergenic | 35.0% | |
| GACATAAATTGCCAAAAAGG+TGG | - | chr3_4:540665-540684 | None:intergenic | 35.0% | |
| GCAGACATAAATTGCCAAAA+AGG | - | chr3_4:540668-540687 | None:intergenic | 35.0% | |
| TGAAATGGCTTCAATCCAAA+AGG | + | chr3_4:540766-540785 | Msa0483770:intron | 35.0% | |
| GAAATGGCTTCAATCCAAAA+GGG | + | chr3_4:540767-540786 | Msa0483770:intron | 35.0% | |
| ! | CAATCCAAAAGGGATTTTGT+TGG | + | chr3_4:540777-540796 | Msa0483770:intron | 35.0% |
| GCATCTCAAATGTCGTAATT+AGG | - | chr3_4:540837-540856 | None:intergenic | 35.0% | |
| CTAACTCATCCTTACAAAAC+CGG | - | chr3_4:540905-540924 | None:intergenic | 35.0% | |
| !!! | AACAGATTTTTTAGGTCCTG+AGG | + | chr3_4:540938-540957 | Msa0483770:intron | 35.0% |
| CTCTCAATAGATAAAGAACC+AGG | - | chr3_4:541314-541333 | None:intergenic | 35.0% | |
| ACTCCCGATGACAAATAATA+TGG | - | chr3_4:541566-541585 | None:intergenic | 35.0% | |
| TCATGTTATGATGCCTTCAT+CGG | + | chr3_4:541589-541608 | Msa0483770:CDS | 35.0% | |
| GCACATATTCATTGGGTAAT+AGG | - | chr3_4:541732-541751 | None:intergenic | 35.0% | |
| GGTTGTAAGCACATATTCAT+TGG | - | chr3_4:541740-541759 | None:intergenic | 35.0% | |
| ATGAATATGTGCTTACAACC+AGG | + | chr3_4:541740-541759 | Msa0483770:CDS | 35.0% | |
| CAGTTTGTCAGTAAGATGAA+TGG | + | chr3_4:541950-541969 | Msa0483770:CDS | 35.0% | |
| GGTGTTAATGTGGATCTTAA+TGG | + | chr3_4:541971-541990 | Msa0483770:CDS | 35.0% | |
| TCATCATATTCAATGGAAGG+AGG | - | chr3_4:542001-542020 | None:intergenic | 35.0% | |
| TAACATATTCAAGCATCCCT+GGG | - | chr3_4:542050-542069 | None:intergenic | 35.0% | |
| TTAACATATTCAAGCATCCC+TGG | - | chr3_4:542051-542070 | None:intergenic | 35.0% | |
| TTCCATTGAAGAAGGAATAG+AGG | - | chr3_4:542137-542156 | None:intergenic | 35.0% | |
| CACAGGCCAACATACAAATA+TGG | - | chr3_4:536605-536624 | None:intergenic | 40.0% | |
| ! | ATTTGTATGTTGGCCTGTGA+CGG | + | chr3_4:536606-536625 | Msa0483770:intron | 40.0% |
| ATTCAACACATGGACCTCAA+AGG | - | chr3_4:536832-536851 | None:intergenic | 40.0% | |
| CTCGTCACATATTCAACACA+TGG | - | chr3_4:536842-536861 | None:intergenic | 40.0% | |
| !! | TCCACCATGGTGTTATGTAA+TGG | + | chr3_4:536939-536958 | Msa0483770:intron | 40.0% |
| ACCATTACATAACACCATGG+TGG | - | chr3_4:536943-536962 | None:intergenic | 40.0% | |
| ! | CATCATATAAACAGGCGTTG+CGG | - | chr3_4:537029-537048 | None:intergenic | 40.0% |
| ATCTTCATGCCCTTCTTCTT+CGG | - | chr3_4:537378-537397 | None:intergenic | 40.0% | |
| TTCTGCGCAATTCTTTGTCT+CGG | - | chr3_4:537416-537435 | None:intergenic | 40.0% | |
| GTTGTTAAGTGCTTGAGACT+CGG | + | chr3_4:537584-537603 | Msa0483770:CDS | 40.0% | |
| TAAATTTGTGGACGCACATG+TGG | + | chr3_4:537651-537670 | Msa0483770:CDS | 40.0% | |
| AGACTCACTAACCTGATTCA+TGG | + | chr3_4:538372-538391 | Msa0483770:intron | 40.0% | |
| GACTCACTAACCTGATTCAT+GGG | + | chr3_4:538373-538392 | Msa0483770:intron | 40.0% | |
| CAGCAAGCAATAAACTTGTC+AGG | + | chr3_4:538696-538715 | Msa0483770:intron | 40.0% | |
| AAGAGACAATCATCCTTCAC+AGG | + | chr3_4:538988-539007 | Msa0483770:intron | 40.0% | |
| AGCAGAATCAAGCTAGACTA+TGG | - | chr3_4:539084-539103 | None:intergenic | 40.0% | |
| ! | ACACACACGACACTTTTATC+TGG | + | chr3_4:539116-539135 | Msa0483770:intron | 40.0% |
| CGAGTTATCATCAGTGTCAT+CGG | - | chr3_4:539302-539321 | None:intergenic | 40.0% | |
| !! | AGAAGCACTATTCAAGAGAC+AGG | + | chr3_4:539325-539344 | Msa0483770:CDS | 40.0% |
| ! | AAGTTTGCACTCTGAAAGGT+TGG | - | chr3_4:539505-539524 | None:intergenic | 40.0% |
| GTCAAAGTTTGCACTCTGAA+AGG | - | chr3_4:539509-539528 | None:intergenic | 40.0% | |
| TTGAAAACCATGAGCAGATC+AGG | + | chr3_4:539757-539776 | Msa0483770:intron | 40.0% | |
| TAAACTTCCTGATCTGCTCA+TGG | - | chr3_4:539767-539786 | None:intergenic | 40.0% | |
| AAGGGTCACAATAGGAAAGT+GGG | + | chr3_4:539868-539887 | Msa0483770:intron | 40.0% | |
| CATTCTGATGCATGATCATC+TGG | - | chr3_4:540177-540196 | None:intergenic | 40.0% | |
| TCATTTACTCCATGGACATC+AGG | - | chr3_4:540204-540223 | None:intergenic | 40.0% | |
| TTCGCTGATCATTTACTCCA+TGG | - | chr3_4:540212-540231 | None:intergenic | 40.0% | |
| ! | ATAGTGGAATTGATGGAACC+TGG | + | chr3_4:540304-540323 | Msa0483770:intron | 40.0% |
| TAGTGGAATTGATGGAACCT+GGG | + | chr3_4:540305-540324 | Msa0483770:intron | 40.0% | |
| AGTTGTTGGGCTCAAAGTAT+GGG | + | chr3_4:540341-540360 | Msa0483770:intron | 40.0% | |
| AATAATCCTCCCCAAGTACT+AGG | - | chr3_4:540370-540389 | None:intergenic | 40.0% | |
| ATTGCTTAAAGGGAGGGAAT+TGG | + | chr3_4:540403-540422 | Msa0483770:intron | 40.0% | |
| AGGACAGGTAGCAAAATAGT+TGG | + | chr3_4:540453-540472 | Msa0483770:intron | 40.0% | |
| CAGGTAGCAAAATAGTTGGA+AGG | + | chr3_4:540457-540476 | Msa0483770:intron | 40.0% | |
| GTAGCAAAATAGTTGGAAGG+AGG | + | chr3_4:540460-540479 | Msa0483770:intron | 40.0% | |
| AGCAAAATAGTTGGAAGGAG+GGG | + | chr3_4:540462-540481 | Msa0483770:intron | 40.0% | |
| AGTAGTTGGCCATTACTGAT+AGG | - | chr3_4:540553-540572 | None:intergenic | 40.0% | |
| ATGTCGTAATTAGGCGACAA+GGG | - | chr3_4:540828-540847 | None:intergenic | 40.0% | |
| AATGTCGTAATTAGGCGACA+AGG | - | chr3_4:540829-540848 | None:intergenic | 40.0% | |
| ! | ACATTTGAGATGCCTTGTGT+TGG | + | chr3_4:540844-540863 | Msa0483770:intron | 40.0% |
| !! | CGGTTTTGTAAGGATGAGTT+AGG | + | chr3_4:540903-540922 | Msa0483770:intron | 40.0% |
| ATCCTTAGTTCGCTCTTCTT+TGG | - | chr3_4:541068-541087 | None:intergenic | 40.0% | |
| AAGAAGAGCGAACTAAGGAT+TGG | + | chr3_4:541068-541087 | Msa0483770:CDS | 40.0% | |
| AGAAGAGCGAACTAAGGATT+GGG | + | chr3_4:541069-541088 | Msa0483770:CDS | 40.0% | |
| AACTTCCATCCTCACATGTA+AGG | - | chr3_4:541183-541202 | None:intergenic | 40.0% | |
| ATGAAGCATGTGCTCAACAA+GGG | + | chr3_4:541207-541226 | Msa0483770:CDS | 40.0% | |
| ! | TTCGTAACGGTTTTTCTGTG+AGG | - | chr3_4:541366-541385 | None:intergenic | 40.0% |
| GAACAATAGGTCCCATTTCT+TGG | - | chr3_4:541422-541441 | None:intergenic | 40.0% | |
| CATATCGAGCTCAGAACAAT+AGG | - | chr3_4:541435-541454 | None:intergenic | 40.0% | |
| ! | TTGTGATGCAAATTTTGCGC+AGG | - | chr3_4:541467-541486 | None:intergenic | 40.0% |
| TGTCTGATGCATCCAAGAAA+TGG | + | chr3_4:541488-541507 | Msa0483770:CDS | 40.0% | |
| GTCTGATGCATCCAAGAAAT+GGG | + | chr3_4:541489-541508 | Msa0483770:CDS | 40.0% | |
| TCTGATGCATCCAAGAAATG+GGG | + | chr3_4:541490-541509 | Msa0483770:CDS | 40.0% | |
| ATGTTAGATCTTTCACGCTC+AGG | - | chr3_4:541524-541543 | None:intergenic | 40.0% | |
| CACTACAATCATGTTCCACA+AGG | + | chr3_4:541674-541693 | Msa0483770:CDS | 40.0% | |
| TACAATCATGTTCCACAAGG+CGG | + | chr3_4:541677-541696 | Msa0483770:CDS | 40.0% | |
| ATTCATTGGGTAATAGGGGT+AGG | - | chr3_4:541726-541745 | None:intergenic | 40.0% | |
| !! | GGAAACAACTTGCTGAAAGA+CGG | + | chr3_4:541912-541931 | Msa0483770:CDS | 40.0% |
| TCATGTCGTCGAAATGACTA+AGG | + | chr3_4:542075-542094 | Msa0483770:intron | 40.0% | |
| CATGTCGTCGAAATGACTAA+GGG | + | chr3_4:542076-542095 | Msa0483770:intron | 40.0% | |
| AATAGAGGCAGATCCTTGAT+AGG | - | chr3_4:542122-542141 | None:intergenic | 40.0% | |
| TGCCTCTATTCCTTCTTCAA+TGG | + | chr3_4:542132-542151 | Msa0483770:three_prime_UTR | 40.0% | |
| !!! | TTTTGGGGTATGGAGAGTGA+AGG | + | chr3_4:536280-536299 | Msa0483770:exon | 45.0% |
| ! | TTTGGGGTATGGAGAGTGAA+GGG | + | chr3_4:536281-536300 | Msa0483770:exon | 45.0% |
| TAGTGTGATCATCGCGATCA+AGG | + | chr3_4:536695-536714 | Msa0483770:intron | 45.0% | |
| ! | ACCTACCATGTTTCTGCCAT+AGG | + | chr3_4:537003-537022 | Msa0483770:intron | 45.0% |
| CGCAACGCCTGTTTATATGA+TGG | + | chr3_4:537027-537046 | Msa0483770:intron | 45.0% | |
| CACTTTACGTTAAACCCCCT+AGG | - | chr3_4:537200-537219 | None:intergenic | 45.0% | |
| CTAGGGGGTTTAACGTAAAG+TGG | + | chr3_4:537198-537217 | Msa0483770:intron | 45.0% | |
| GGGGTTTAACGTAAAGTGGT+TGG | + | chr3_4:537202-537221 | Msa0483770:intron | 45.0% | |
| TGATGCACTGAATGCAGAGA+AGG | + | chr3_4:537317-537336 | Msa0483770:CDS | 45.0% | |
| ! | GATCTCATACTGGCTGAAGT+TGG | + | chr3_4:537348-537367 | Msa0483770:CDS | 45.0% |
| TCTGCGCAATTCTTTGTCTC+GGG | - | chr3_4:537415-537434 | None:intergenic | 45.0% | |
| AGTGATGTCTGCACAAGATG+AGG | + | chr3_4:537553-537572 | Msa0483770:intron | 45.0% | |
| TGCCTACATTAAGGGATGGA+GGG | - | chr3_4:538415-538434 | None:intergenic | 45.0% | |
| GCAATGGGTGCCTACATTAA+GGG | - | chr3_4:538423-538442 | None:intergenic | 45.0% | |
| TGGGTGCTTAGATATAGGGA+CGG | + | chr3_4:538657-538676 | Msa0483770:intron | 45.0% | |
| TGCTTAGATATAGGGACGGA+GGG | + | chr3_4:538661-538680 | Msa0483770:intron | 45.0% | |
| !! | GACCCTTTCGTAAGTATTGG+TGG | - | chr3_4:538799-538818 | None:intergenic | 45.0% |
| CAAGCTAGACTATGGTTGAG+AGG | - | chr3_4:539076-539095 | None:intergenic | 45.0% | |
| ATCAGTGTCATCGGAGAACA+GGG | - | chr3_4:539293-539312 | None:intergenic | 45.0% | |
| ATCAGTCCAACAAGAGCAAG+AGG | + | chr3_4:539351-539370 | Msa0483770:CDS | 45.0% | |
| CTATGTGCCCCACAAGTTAT+TGG | + | chr3_4:539615-539634 | Msa0483770:intron | 45.0% | |
| AGGGCAACTAATTCAGGAGT+TGG | - | chr3_4:539712-539731 | None:intergenic | 45.0% | |
| CAAAGAGGAAGGGTCACAAT+AGG | + | chr3_4:539860-539879 | Msa0483770:intron | 45.0% | |
| GAAGGGTCACAATAGGAAAG+TGG | + | chr3_4:539867-539886 | Msa0483770:intron | 45.0% | |
| AGGGTCACAATAGGAAAGTG+GGG | + | chr3_4:539869-539888 | Msa0483770:intron | 45.0% | |
| !!! | ATCACCTCTGGTTTTGTGCA+TGG | - | chr3_4:539900-539919 | None:intergenic | 45.0% |
| TGCTAATGCTGATGCTGTTG+AGG | + | chr3_4:540146-540165 | Msa0483770:CDS | 45.0% | |
| TCTGATGCATGATCATCTGG+AGG | - | chr3_4:540174-540193 | None:intergenic | 45.0% | |
| GGAGTAAATGATCAGCGAAC+AGG | + | chr3_4:540213-540232 | Msa0483770:CDS | 45.0% | |
| AGTGGAATTGATGGAACCTG+GGG | + | chr3_4:540306-540325 | Msa0483770:intron | 45.0% | |
| AATTGATGGAACCTGGGGAA+TGG | + | chr3_4:540311-540330 | Msa0483770:intron | 45.0% | |
| ATTGATGGAACCTGGGGAAT+GGG | + | chr3_4:540312-540331 | Msa0483770:intron | 45.0% | |
| CAGTTGTTGGGCTCAAAGTA+TGG | + | chr3_4:540340-540359 | Msa0483770:intron | 45.0% | |
| AGTATGGGAAGCCTAGTACT+TGG | + | chr3_4:540356-540375 | Msa0483770:intron | 45.0% | |
| GTATGGGAAGCCTAGTACTT+GGG | + | chr3_4:540357-540376 | Msa0483770:intron | 45.0% | |
| TATGGGAAGCCTAGTACTTG+GGG | + | chr3_4:540358-540377 | Msa0483770:intron | 45.0% | |
| ! | ATTGGTTGCACTTGCTGAGT+TGG | + | chr3_4:540421-540440 | Msa0483770:intron | 45.0% |
| ATCCGGATGCCTATCAGTAA+TGG | + | chr3_4:540541-540560 | Msa0483770:intron | 45.0% | |
| ! | CTCATCTTTCCCCACCTTTT+TGG | + | chr3_4:540651-540670 | Msa0483770:intron | 45.0% |
| CAAGGGGCAGATCACAATAA+AGG | - | chr3_4:540811-540830 | None:intergenic | 45.0% | |
| TGTCGTAATTAGGCGACAAG+GGG | - | chr3_4:540827-540846 | None:intergenic | 45.0% | |
| !! | CCTTACAAAACCGGCTTGTA+AGG | - | chr3_4:540896-540915 | None:intergenic | 45.0% |
| !! | CCTTACAAGCCGGTTTTGTA+AGG | + | chr3_4:540893-540912 | Msa0483770:intron | 45.0% |
| CTCCAAAGAAGAGCGAACTA+AGG | + | chr3_4:541063-541082 | Msa0483770:CDS | 45.0% | |
| GAAGAGCGAACTAAGGATTG+GGG | + | chr3_4:541070-541089 | Msa0483770:CDS | 45.0% | |
| CAGCATGAACAATCCCTTCA+AGG | - | chr3_4:541151-541170 | None:intergenic | 45.0% | |
| TTCCATCCTCACATGTAAGG+CGG | - | chr3_4:541180-541199 | None:intergenic | 45.0% | |
| CATGAAGCATGTGCTCAACA+AGG | + | chr3_4:541206-541225 | Msa0483770:CDS | 45.0% | |
| TGAAGCATGTGCTCAACAAG+GGG | + | chr3_4:541208-541227 | Msa0483770:CDS | 45.0% | |
| CAGGTATACTATTGCTGCTG+GGG | - | chr3_4:541295-541314 | None:intergenic | 45.0% | |
| CCAGGTATACTATTGCTGCT+GGG | - | chr3_4:541296-541315 | None:intergenic | 45.0% | |
| ACCAGGTATACTATTGCTGC+TGG | - | chr3_4:541297-541316 | None:intergenic | 45.0% | |
| TTGTACTCCACCTGCATCTT+TGG | + | chr3_4:541337-541356 | Msa0483770:CDS | 45.0% | |
| GGACAATGAACCCCATTTCT+TGG | - | chr3_4:541503-541522 | None:intergenic | 45.0% | |
| ! | TGATACATTTGCGCCGATGA+AGG | - | chr3_4:541605-541624 | None:intergenic | 45.0% |
| ATGTACCAGCATGATTCTGC+AGG | - | chr3_4:541643-541662 | None:intergenic | 45.0% | |
| ATAGGGGTAGGACATCATTC+CGG | - | chr3_4:541714-541733 | None:intergenic | 45.0% | |
| AGATTCCTTCAGGTCAGTCA+TGG | + | chr3_4:541765-541784 | Msa0483770:CDS | 45.0% | |
| AGCTAGAGATTACTCTCCCA+GGG | + | chr3_4:542031-542050 | Msa0483770:exon | 45.0% | |
| !! | ATTGGCCATCACTTGCTATG+AGG | + | chr3_4:542176-542195 | Msa0483770:three_prime_UTR | 45.0% |
| !! | TTGGCCATCACTTGCTATGA+GGG | + | chr3_4:542177-542196 | Msa0483770:three_prime_UTR | 45.0% |
| ! | GCGGCCACAATCAAGGTTTT+AGG | + | chr3_4:536630-536649 | Msa0483770:intron | 50.0% |
| TCCTTTGACCGCCATTCTCT+AGG | + | chr3_4:536729-536748 | Msa0483770:intron | 50.0% | |
| TCCTAGAGAATGGCGGTCAA+AGG | - | chr3_4:536733-536752 | None:intergenic | 50.0% | |
| GCCTATGGCAGAAACATGGT+AGG | - | chr3_4:537007-537026 | None:intergenic | 50.0% | |
| !! | AGTTGGCCTTCCGAAGAAGA+AGG | + | chr3_4:537365-537384 | Msa0483770:CDS | 50.0% |
| !! | GTTGGCCTTCCGAAGAAGAA+GGG | + | chr3_4:537366-537385 | Msa0483770:CDS | 50.0% |
| TCATGCCCTTCTTCTTCGGA+AGG | - | chr3_4:537374-537393 | None:intergenic | 50.0% | |
| TAAGTGCTTGAGACTCGGAG+CGG | + | chr3_4:537589-537608 | Msa0483770:CDS | 50.0% | |
| AGGGGATGCTTACTATGTCC+TGG | + | chr3_4:538289-538308 | Msa0483770:intron | 50.0% | |
| CTCCCTCCATCCCTTAATGT+AGG | + | chr3_4:538410-538429 | Msa0483770:intron | 50.0% | |
| GTGCCTACATTAAGGGATGG+AGG | - | chr3_4:538416-538435 | None:intergenic | 50.0% | |
| TGGGTGCCTACATTAAGGGA+TGG | - | chr3_4:538419-538438 | None:intergenic | 50.0% | |
| GGCAATGGGTGCCTACATTA+AGG | - | chr3_4:538424-538443 | None:intergenic | 50.0% | |
| GTGCTTAGATATAGGGACGG+AGG | + | chr3_4:538660-538679 | Msa0483770:intron | 50.0% | |
| CAGGAAGGTCTATGCGAGAA+TGG | - | chr3_4:539147-539166 | None:intergenic | 50.0% | |
| CATCAGTGTCATCGGAGAAC+AGG | - | chr3_4:539294-539313 | None:intergenic | 50.0% | |
| GTGTCCATGCACAAAACCAG+AGG | + | chr3_4:539893-539912 | Msa0483770:intron | 50.0% | |
| CTACACGATTGGATCACCTC+TGG | - | chr3_4:539912-539931 | None:intergenic | 50.0% | |
| GAATGTCAGCCTGATGTCCA+TGG | + | chr3_4:540192-540211 | Msa0483770:CDS | 50.0% | |
| GAATGGGTGGGTCAGTTGTT+GGG | + | chr3_4:540328-540347 | Msa0483770:intron | 50.0% | |
| ! | TTGCACTTGCTGAGTTGGCA+GGG | + | chr3_4:540426-540445 | Msa0483770:intron | 50.0% |
| GGCCATTACTGATAGGCATC+CGG | - | chr3_4:540546-540565 | None:intergenic | 50.0% | |
| GGGGCAGATCACAATAAAGG+TGG | - | chr3_4:540808-540827 | None:intergenic | 50.0% | |
| !! | TGCCTTGTGTTGGCTTTGAG+AGG | + | chr3_4:540854-540873 | Msa0483770:intron | 50.0% |
| !! | GCCTTGTGTTGGCTTTGAGA+GGG | + | chr3_4:540855-540874 | Msa0483770:intron | 50.0% |
| ACCCTCTCAAAGCCAACACA+AGG | - | chr3_4:540859-540878 | None:intergenic | 50.0% | |
| !! | TTGTGTTGGCTTTGAGAGGG+TGG | + | chr3_4:540858-540877 | Msa0483770:intron | 50.0% |
| !! | CAAAACCGGCTTGTAAGGTG+AGG | - | chr3_4:540891-540910 | None:intergenic | 50.0% |
| AGCGAACTAAGGATTGGGGT+TGG | + | chr3_4:541074-541093 | Msa0483770:CDS | 50.0% | |
| GCGAACTAAGGATTGGGGTT+GGG | + | chr3_4:541075-541094 | Msa0483770:CDS | 50.0% | |
| CGAACTAAGGATTGGGGTTG+GGG | + | chr3_4:541076-541095 | Msa0483770:CDS | 50.0% | |
| ACAATGCCGCCTTACATGTG+AGG | + | chr3_4:541171-541190 | Msa0483770:CDS | 50.0% | |
| CCCAGCAGCAATAGTATACC+TGG | + | chr3_4:541293-541312 | Msa0483770:CDS | 50.0% | |
| TGTGAGGCTTCCAAAGATGC+AGG | - | chr3_4:541350-541369 | None:intergenic | 50.0% | |
| GACATCATTCCGGTGGTATG+AGG | - | chr3_4:541704-541723 | None:intergenic | 50.0% | |
| CAACCAGGTCAGATTCCTTC+AGG | + | chr3_4:541755-541774 | Msa0483770:CDS | 50.0% | |
| TGACCTGAAGGAATCTGACC+TGG | - | chr3_4:541761-541780 | None:intergenic | 50.0% | |
| TCGGATGAACTTCCGAAGGA+TGG | - | chr3_4:541791-541810 | None:intergenic | 50.0% | |
| TGCTTCGGATGAACTTCCGA+AGG | - | chr3_4:541795-541814 | None:intergenic | 50.0% | |
| GAGCTAGAGATTACTCTCCC+AGG | + | chr3_4:542030-542049 | Msa0483770:exon | 50.0% | |
| GCAACCCTCATAGCAAGTGA+TGG | - | chr3_4:542184-542203 | None:intergenic | 50.0% | |
| GGAAAAGGTCTGTGACACCG+AGG | + | chr3_4:536651-536670 | Msa0483770:intron | 55.0% | |
| TGCGGCCTATGGCAGAAACA+TGG | - | chr3_4:537011-537030 | None:intergenic | 55.0% | |
| ! | TAAACAGGCGTTGCGGCCTA+TGG | - | chr3_4:537022-537041 | None:intergenic | 55.0% |
| TGTGGACGCACATGTGGAGA+AGG | + | chr3_4:537657-537676 | Msa0483770:CDS | 55.0% | |
| AGTGTCATCGGAGAACAGGG+TGG | - | chr3_4:539290-539309 | None:intergenic | 55.0% | |
| CGCTCACCTCTTGCTCTTGT+TGG | - | chr3_4:539360-539379 | None:intergenic | 55.0% | |
| ATGGAACCTGGGGAATGGGT+GGG | + | chr3_4:540316-540335 | Msa0483770:intron | 55.0% | |
| GGAATGGGTGGGTCAGTTGT+TGG | + | chr3_4:540327-540346 | Msa0483770:intron | 55.0% | |
| ! | GTTGCACTTGCTGAGTTGGC+AGG | + | chr3_4:540425-540444 | Msa0483770:intron | 55.0% |
| ! | TGCTGAGTTGGCAGGGTGTT+AGG | + | chr3_4:540433-540452 | Msa0483770:intron | 55.0% |
| ! | AGTTGGCAGGGTGTTAGGAC+AGG | + | chr3_4:540438-540457 | Msa0483770:intron | 55.0% |
| !! | TGTTGGCTTTGAGAGGGTGG+AGG | + | chr3_4:540861-540880 | Msa0483770:intron | 55.0% |
| GCACTCCTCACCTTACAAGC+CGG | + | chr3_4:540883-540902 | Msa0483770:intron | 55.0% | |
| TGCCGCCTTACATGTGAGGA+TGG | + | chr3_4:541175-541194 | Msa0483770:CDS | 55.0% | |
| GAGGCTTCCAAAGATGCAGG+TGG | - | chr3_4:541347-541366 | None:intergenic | 55.0% | |
| CAGCATGATTCTGCAGGTCG+TGG | - | chr3_4:541637-541656 | None:intergenic | 55.0% | |
| CACGACCTGCAGAATCATGC+TGG | + | chr3_4:541635-541654 | Msa0483770:CDS | 55.0% | |
| GATGGCCATGACTGACCTGA+AGG | - | chr3_4:541773-541792 | None:intergenic | 55.0% | |
| GGTCAGTCATGGCCATCCTT+CGG | + | chr3_4:541776-541795 | Msa0483770:CDS | 55.0% | |
| TGAAAGACGGCCTCGTGTGA+GGG | + | chr3_4:541925-541944 | Msa0483770:CDS | 55.0% | |
| ACAAACTGTCCCCTCACACG+AGG | - | chr3_4:541938-541957 | None:intergenic | 55.0% | |
| ! | TATGTTGGCCTGTGACGGCG+CGG | + | chr3_4:536611-536630 | Msa0483770:intron | 60.0% |
| GGACGCACATGTGGAGAAGG+AGG | + | chr3_4:537660-537679 | Msa0483770:CDS | 60.0% | |
| ! | CATGTGGAGAAGGAGGCGCA+TGG | + | chr3_4:537667-537686 | Msa0483770:CDS | 60.0% |
| GATGGAACCTGGGGAATGGG+TGG | + | chr3_4:540315-540334 | Msa0483770:intron | 60.0% | |
| AACTGACCCACCCATTCCCC+AGG | - | chr3_4:540325-540344 | None:intergenic | 60.0% | |
| GGGAAGCCTAGTACTTGGGG+AGG | + | chr3_4:540361-540380 | Msa0483770:intron | 60.0% | |
| GTGGTATGAGGACCGCCTTG+TGG | - | chr3_4:541692-541711 | None:intergenic | 60.0% | |
| CAAGGCGGTCCTCATACCAC+CGG | + | chr3_4:541692-541711 | Msa0483770:CDS | 60.0% | |
| GGGGTAGGACATCATTCCGG+TGG | - | chr3_4:541711-541730 | None:intergenic | 60.0% | |
| CTGAAAGACGGCCTCGTGTG+AGG | + | chr3_4:541924-541943 | Msa0483770:CDS | 60.0% | |
| GAAAGACGGCCTCGTGTGAG+GGG | + | chr3_4:541926-541945 | Msa0483770:CDS | 60.0% | |
| TGACGGCGCGGCCACAATCA+AGG | + | chr3_4:536623-536642 | Msa0483770:intron | 65.0% | |
| GATTGTGGCCGCGCCGTCAC+AGG | - | chr3_4:536622-536641 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 536249 | 542219 | 536249 | ID=Msa0483770;Name=Msa0483770 |
| chr3_4 | mRNA | 536249 | 542219 | 536249 | ID=Msa0483770-mRNA-1;Parent=Msa0483770;Name=Msa0483770-mRNA-1;_AED=0.29;_eAED=0.29;_QI=40|1|1|1|0.83|0.71|7|157|565 |
| chr3_4 | exon | 536249 | 536436 | 536249 | ID=Msa0483770-mRNA-1:exon:152;Parent=Msa0483770-mRNA-1 |
| chr3_4 | exon | 537286 | 537447 | 537286 | ID=Msa0483770-mRNA-1:exon:153;Parent=Msa0483770-mRNA-1 |
| chr3_4 | exon | 537555 | 537688 | 537555 | ID=Msa0483770-mRNA-1:exon:154;Parent=Msa0483770-mRNA-1 |
| chr3_4 | exon | 539205 | 539372 | 539205 | ID=Msa0483770-mRNA-1:exon:155;Parent=Msa0483770-mRNA-1 |
| chr3_4 | exon | 540138 | 540234 | 540138 | ID=Msa0483770-mRNA-1:exon:156;Parent=Msa0483770-mRNA-1 |
| chr3_4 | exon | 541048 | 542051 | 541048 | ID=Msa0483770-mRNA-1:exon:157;Parent=Msa0483770-mRNA-1 |
| chr3_4 | exon | 542078 | 542219 | 542078 | ID=Msa0483770-mRNA-1:exon:158;Parent=Msa0483770-mRNA-1 |
| chr3_4 | five_prime_UTR | 536249 | 536288 | 536249 | ID=Msa0483770-mRNA-1:five_prime_utr;Parent=Msa0483770-mRNA-1 |
| chr3_4 | CDS | 536289 | 536436 | 536289 | ID=Msa0483770-mRNA-1:cds;Parent=Msa0483770-mRNA-1 |
| chr3_4 | CDS | 537286 | 537447 | 537286 | ID=Msa0483770-mRNA-1:cds;Parent=Msa0483770-mRNA-1 |
| chr3_4 | CDS | 537555 | 537688 | 537555 | ID=Msa0483770-mRNA-1:cds;Parent=Msa0483770-mRNA-1 |
| chr3_4 | CDS | 539205 | 539372 | 539205 | ID=Msa0483770-mRNA-1:cds;Parent=Msa0483770-mRNA-1 |
| chr3_4 | CDS | 540138 | 540234 | 540138 | ID=Msa0483770-mRNA-1:cds;Parent=Msa0483770-mRNA-1 |
| chr3_4 | CDS | 541048 | 542036 | 541048 | ID=Msa0483770-mRNA-1:cds;Parent=Msa0483770-mRNA-1 |
| chr3_4 | three_prime_UTR | 542037 | 542051 | 542037 | ID=Msa0483770-mRNA-1:three_prime_utr;Parent=Msa0483770-mRNA-1 |
| chr3_4 | three_prime_UTR | 542078 | 542219 | 542078 | ID=Msa0483770-mRNA-1:three_prime_utr;Parent=Msa0483770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
