Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578470 | XP_003607966.1 | 91.197 | 284 | 25 | 0 | 1 | 284 | 1 | 284 | 0.0 | 532 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578470 | G7JL76 | 91.197 | 284 | 25 | 0 | 1 | 284 | 1 | 284 | 0.0 | 532 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0402210 | Msa0578470 | 0.804294 | 2.314424e-49 | -8.615850e-47 |
| Msa0355140 | Msa0578470 | 0.804999 | 1.649384e-49 | -8.615850e-47 |
| Msa0483770 | Msa0578470 | 0.812017 | 5.237441e-51 | -8.615850e-47 |
| Msa0515270 | Msa0578470 | -0.801131 | 1.040520e-48 | -8.615850e-47 |
| Msa0578470 | Msa0651840 | 0.895772 | 6.975187e-76 | -8.615850e-47 |
| Msa0578470 | Msa0694120 | 0.857043 | 2.135655e-62 | -8.615850e-47 |
| Msa0578470 | Msa1130820 | -0.818055 | 2.392978e-52 | -8.615850e-47 |
| Msa0578470 | Msa1406670 | -0.813501 | 2.479762e-51 | -8.615850e-47 |
| Msa0578470 | Msa1448870 | -0.816046 | 6.765473e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578470 | MtrunA17_Chr4g0044801 | 91.197 | 284 | 25 | 0 | 1 | 284 | 1 | 284 | 0.0 | 532 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 73 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCAACGACGAACAGATTT+TGG | 0.138569 | 4_1:+83038271 | None:intergenic |
| CGGCGACGCCGCTCCGTTTA+AGG | 0.175878 | 4_1:-83041200 | Msa0578470:intron |
| GTCATATCTTAGTTCTTTAG+AGG | 0.270733 | 4_1:-83040154 | Msa0578470:CDS |
| TTTCAAGCTTGATCTTCTTC+TGG | 0.301755 | 4_1:+83039889 | None:intergenic |
| CTGTTCGTCGTTGCATTCTC+AGG | 0.311602 | 4_1:-83038264 | Msa0578470:CDS |
| AATTCATGGCCTTCATTCTC+TGG | 0.332105 | 4_1:+83038325 | None:intergenic |
| GCAGCATGCCCATGGCTAAA+AGG | 0.335052 | 4_1:-83038530 | Msa0578470:CDS |
| GCTGATTCTCATGTTGTTGC+AGG | 0.351005 | 4_1:-83039840 | Msa0578470:CDS |
| AAACCATGGTCATAGGTATT+AGG | 0.356119 | 4_1:+83039768 | None:intergenic |
| TATGAGCAGGTTGTTCCATT+TGG | 0.356966 | 4_1:-83038391 | Msa0578470:intron |
| GGAGGTGTTGTCGGCGGTGG+TGG | 0.380119 | 4_1:+83041222 | None:intergenic |
| CATGGGCATGCTGCTTGAAC+AGG | 0.381582 | 4_1:+83038539 | None:intergenic |
| TTTGGGACACGGAAACTCTC+TGG | 0.384612 | 4_1:+83038289 | None:intergenic |
| TCAGCTGCGCTCTCTAACAT+AGG | 0.395468 | 4_1:+83039858 | None:intergenic |
| CTGACCTGCCTATGCATACT+AGG | 0.400834 | 4_1:+83040030 | None:intergenic |
| TTATCTACCATTGTAGCTCC+TGG | 0.424498 | 4_1:+83039810 | None:intergenic |
| GCAAAGTAAACCATGGTCAT+AGG | 0.430258 | 4_1:+83039761 | None:intergenic |
| GGTGTTGTCGGCGGTGGTGG+CGG | 0.431602 | 4_1:+83041225 | None:intergenic |
| GTTCTATACATTTACGTGGT+TGG | 0.433133 | 4_1:-83040107 | Msa0578470:CDS |
| TTTGGAAAGTTTCAGACTGC+TGG | 0.436663 | 4_1:-83038373 | Msa0578470:CDS |
| GTTGTCGGCGGTGGTGGCGG+AGG | 0.447565 | 4_1:+83041228 | None:intergenic |
| GAGTGTGAAGTTACCTTAAA+CGG | 0.448421 | 4_1:+83041187 | None:intergenic |
| GGCGTCGCCGGAGGTGTTGT+CGG | 0.454876 | 4_1:+83041213 | None:intergenic |
| GAGTCGGATTGCAGTACTAT+AGG | 0.456476 | 4_1:-83039651 | Msa0578470:intron |
| GGCGGTGGTGGCGGAGGAGT+CGG | 0.456643 | 4_1:+83041234 | None:intergenic |
| GCCGGAGGTGTTGTCGGCGG+TGG | 0.470695 | 4_1:+83041219 | None:intergenic |
| GTGGTTGGAGCTTTCACAGT+AGG | 0.478766 | 4_1:-83040092 | Msa0578470:CDS |
| ACCACCGCCGACAACACCTC+CGG | 0.486058 | 4_1:-83041220 | Msa0578470:CDS |
| GCAGTCTGAAACTTTCCAAA+TGG | 0.487598 | 4_1:+83038376 | None:intergenic |
| TGGTTGGAGCTTTCACAGTA+GGG | 0.495797 | 4_1:-83040091 | Msa0578470:CDS |
| CTTAAACGGAGCGGCGTCGC+CGG | 0.497093 | 4_1:+83041201 | None:intergenic |
| GGAGTTGAGATAGCAATTCA+TGG | 0.498699 | 4_1:+83038311 | None:intergenic |
| CAGCTGCGCTCTCTAACATA+GGG | 0.501825 | 4_1:+83039859 | None:intergenic |
| CGGAGGGGAACGTCGGCGAA+TGG | 0.504995 | 4_1:+83041287 | None:intergenic |
| TACTCCTAGTATGCATAGGC+AGG | 0.513247 | 4_1:-83040034 | Msa0578470:intron |
| TTGGGACACGGAAACTCTCT+GGG | 0.514398 | 4_1:+83038290 | None:intergenic |
| TACTGCAATCCGACTCTGCA+TGG | 0.515249 | 4_1:+83039658 | None:intergenic |
| GATCTGTCCAGCGTCTAGAC+TGG | 0.525092 | 4_1:+83040187 | None:intergenic |
| CAGTCTCTGGCTCTACAAGA+TGG | 0.536291 | 4_1:-83039915 | Msa0578470:CDS |
| TTGCTTCTCCACACAACTTG+CGG | 0.541525 | 4_1:+83039689 | None:intergenic |
| ACAACTTGCGGCTGACATGT+TGG | 0.543608 | 4_1:+83039701 | None:intergenic |
| CGAGTCAACTCGAGATCGGA+GGG | 0.545950 | 4_1:+83041271 | None:intergenic |
| CTGTTCAAGCAGCATGCCCA+TGG | 0.547626 | 4_1:-83038538 | Msa0578470:CDS |
| CATGTCAGCCGCAAGTTGTG+TGG | 0.549493 | 4_1:-83039697 | Msa0578470:CDS |
| AAACGGAGCGGCGTCGCCGG+AGG | 0.558507 | 4_1:+83041204 | None:intergenic |
| AATGGAGATTACGACGGAGA+GGG | 0.566235 | 4_1:+83041305 | None:intergenic |
| GGCAAATGCTGAACTCCCGC+TGG | 0.566895 | 4_1:+83039722 | None:intergenic |
| GTTGTTGCAGGAAGTGAACC+AGG | 0.568696 | 4_1:-83039828 | Msa0578470:CDS |
| CCATGGTTTACTTTGCGACA+AGG | 0.568719 | 4_1:-83039754 | Msa0578470:CDS |
| ACAAGGAGATTCATGCCAGC+GGG | 0.569007 | 4_1:-83039737 | Msa0578470:CDS |
| GGTCAGTGATCAGAACTTCA+AGG | 0.574496 | 4_1:-83038571 | Msa0578470:CDS |
| AATTCAACACCAGAGAATGA+AGG | 0.581399 | 4_1:-83038334 | Msa0578470:CDS |
| GGAGCGAGTCAACTCGAGAT+CGG | 0.583129 | 4_1:+83041267 | None:intergenic |
| AAGTGAACCAGGAGCTACAA+TGG | 0.586889 | 4_1:-83039817 | Msa0578470:CDS |
| AAAATACTCCTAGTATGCAT+AGG | 0.589165 | 4_1:-83040038 | Msa0578470:CDS |
| TGTTCGTCGTTGCATTCTCA+GGG | 0.590260 | 4_1:-83038263 | Msa0578470:CDS |
| CATCGTTCTATACATTTACG+TGG | 0.590322 | 4_1:-83040111 | Msa0578470:CDS |
| TAAATTCCACAGTACTTGAT+CGG | 0.594214 | 4_1:+83038476 | None:intergenic |
| GCGAGTCAACTCGAGATCGG+AGG | 0.597744 | 4_1:+83041270 | None:intergenic |
| GAGCCTAATACCTATGACCA+TGG | 0.605194 | 4_1:-83039771 | Msa0578470:CDS |
| GACAAGGAGATTCATGCCAG+CGG | 0.608297 | 4_1:-83039738 | Msa0578470:CDS |
| GTCGTTGCATTCTCAGGGAT+AGG | 0.613936 | 4_1:-83038258 | Msa0578470:CDS |
| ATGTTCATTCCATGCAGAGT+CGG | 0.633709 | 4_1:-83039667 | Msa0578470:CDS |
| TCGAGATCGGAGGGGAACGT+CGG | 0.640659 | 4_1:+83041280 | None:intergenic |
| ACCAGGACCAGTCTAGACGC+TGG | 0.642505 | 4_1:-83040194 | Msa0578470:intron |
| TTGAAGACTGATGCAGCTGA+TGG | 0.643170 | 4_1:-83038507 | Msa0578470:CDS |
| GTCGCCGGAGGTGTTGTCGG+CGG | 0.654122 | 4_1:+83041216 | None:intergenic |
| CCTTGTCGCAAAGTAAACCA+TGG | 0.678411 | 4_1:+83039754 | None:intergenic |
| GAATGGAGATTACGACGGAG+AGG | 0.689455 | 4_1:+83041304 | None:intergenic |
| AGCTGCGCTCTCTAACATAG+GGG | 0.693425 | 4_1:+83039860 | None:intergenic |
| TGAAGTTACCTTAAACGGAG+CGG | 0.719373 | 4_1:+83041192 | None:intergenic |
| TCGGCGAATGGAGATTACGA+CGG | 0.740365 | 4_1:+83041299 | None:intergenic |
| GAGTCAACTCGAGATCGGAG+GGG | 0.744449 | 4_1:+83041272 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATCTAATATCTAATAT+TGG | - | chr4_1:83039126-83039145 | Msa0578470:intron | 10.0% |
| !!! | ATCATTTTAGTAAATTGTTT+CGG | - | chr4_1:83038848-83038867 | Msa0578470:intron | 15.0% |
| !! | CTTTGAATATTAACATTTAA+AGG | - | chr4_1:83040319-83040338 | Msa0578470:intron | 15.0% |
| !!! | TTTTTTATTTGTCATATTAG+AGG | - | chr4_1:83040982-83041001 | Msa0578470:intron | 15.0% |
| !!! | TATGCTTCGATTTTTTTTTA+TGG | - | chr4_1:83038461-83038480 | Msa0578470:intron | 20.0% |
| !! | ACAGATGTATAAATTATACT+TGG | + | chr4_1:83038782-83038801 | None:intergenic | 20.0% |
| !! | GTATAATTTATACATCTGTA+TGG | - | chr4_1:83038783-83038802 | Msa0578470:intron | 20.0% |
| !! | GAATGTAAAAAGAACAAATA+AGG | - | chr4_1:83038989-83039008 | Msa0578470:intron | 20.0% |
| !!! | TAAGGAAAATCATTTTGAAA+AGG | - | chr4_1:83039007-83039026 | Msa0578470:intron | 20.0% |
| !!! | TTTTTGATTGCTTGTAAATT+TGG | - | chr4_1:83039331-83039350 | Msa0578470:intron | 20.0% |
| !!! | TTAATTCTAAATTTTGTACC+AGG | - | chr4_1:83039363-83039382 | Msa0578470:intron | 20.0% |
| !!! | ATTTAAGTTTCTCTAAACAT+TGG | - | chr4_1:83040124-83040143 | Msa0578470:CDS | 20.0% |
| !! | AATGTATGACATAAATTTGT+TGG | - | chr4_1:83040581-83040600 | Msa0578470:intron | 20.0% |
| !!! | CTGTATTTAAATGAGTTTTA+TGG | - | chr4_1:83040774-83040793 | Msa0578470:intron | 20.0% |
| !!! | AAATAGTTTAAAAGCATAGT+GGG | + | chr4_1:83040851-83040870 | None:intergenic | 20.0% |
| !!! | AAAATAGTTTAAAAGCATAG+TGG | + | chr4_1:83040852-83040871 | None:intergenic | 20.0% |
| !! | AATCTCAAGTAAATTTGAAT+GGG | - | chr4_1:83041136-83041155 | Msa0578470:intron | 20.0% |
| ! | AAAACATAAACTCTAAACCA+CGG | + | chr4_1:83038650-83038669 | None:intergenic | 25.0% |
| ! | CAGAGATATTGAGATATTAT+AGG | + | chr4_1:83039205-83039224 | None:intergenic | 25.0% |
| ! | CTATAATATCTCAATATCTC+TGG | - | chr4_1:83039203-83039222 | Msa0578470:intron | 25.0% |
| ! | ATTGTCAATTTCAAACTCTT+GGG | + | chr4_1:83039283-83039302 | None:intergenic | 25.0% |
| ! | TATTGTCAATTTCAAACTCT+TGG | + | chr4_1:83039284-83039303 | None:intergenic | 25.0% |
| !!! | ATAATAAAGAGTGTCTATCA+TGG | - | chr4_1:83039301-83039320 | Msa0578470:intron | 25.0% |
| !!! | TAATAAAGAGTGTCTATCAT+GGG | - | chr4_1:83039302-83039321 | Msa0578470:intron | 25.0% |
| !!! | ATTTTTTTCCCAGTATAATC+AGG | - | chr4_1:83039611-83039630 | Msa0578470:intron | 25.0% |
| ! | AGGAAAAAAAAGGGATAAAA+AGG | + | chr4_1:83039637-83039656 | None:intergenic | 25.0% |
| !!! | TACTTTTTCTTTTTGCATGT+TGG | - | chr4_1:83039956-83039975 | Msa0578470:intron | 25.0% |
| !! | TATTTAGTTTAAATGACCAC+TGG | - | chr4_1:83040160-83040179 | Msa0578470:CDS | 25.0% |
| !!! | CCAAGAGAGTTTTTATTTAT+GGG | - | chr4_1:83040381-83040400 | Msa0578470:intron | 25.0% |
| ! | GCCTTTATAGATTTACATTT+GGG | - | chr4_1:83040422-83040441 | Msa0578470:intron | 25.0% |
| ! | ACCCAAATGTAAATCTATAA+AGG | + | chr4_1:83040426-83040445 | None:intergenic | 25.0% |
| ! | TTTATGGTCCTTTAAATAAG+TGG | - | chr4_1:83040790-83040809 | Msa0578470:intron | 25.0% |
| ! | CTTGAAAACCACTTATTTAA+AGG | + | chr4_1:83040801-83040820 | None:intergenic | 25.0% |
| !! | AATAGTTTAAAAGCATAGTG+GGG | + | chr4_1:83040850-83040869 | None:intergenic | 25.0% |
| ! | AATTTACTTGAGATTGTTTC+AGG | + | chr4_1:83041131-83041150 | None:intergenic | 25.0% |
| ! | CAATCTCAAGTAAATTTGAA+TGG | - | chr4_1:83041135-83041154 | Msa0578470:intron | 25.0% |
| ! | GAAAAAATTGCGAGTTTTTG+TGG | - | chr4_1:83038485-83038504 | Msa0578470:intron | 30.0% |
| ! | TAGAAGATCTGAAATTGCTA+AGG | - | chr4_1:83038715-83038734 | Msa0578470:intron | 30.0% |
| AAGGATTAATGTCATAGTTG+AGG | - | chr4_1:83038734-83038753 | Msa0578470:intron | 30.0% | |
| !! | TTATATCCATGAGCTTGTTT+TGG | - | chr4_1:83038887-83038906 | Msa0578470:intron | 30.0% |
| CTCTGATTGTTAACAGAAAA+TGG | + | chr4_1:83038935-83038954 | None:intergenic | 30.0% | |
| TTGTCAATTTCAAACTCTTG+GGG | + | chr4_1:83039282-83039301 | None:intergenic | 30.0% | |
| ! | GTCATATCTTAGTTCTTTAG+AGG | - | chr4_1:83039420-83039439 | Msa0578470:intron | 30.0% |
| AAAATACTCCTAGTATGCAT+AGG | - | chr4_1:83039536-83039555 | Msa0578470:intron | 30.0% | |
| ATTACCACACATAAACACAA+TGG | + | chr4_1:83039593-83039612 | None:intergenic | 30.0% | |
| TAAAAAGGCCTGATTATACT+GGG | + | chr4_1:83039622-83039641 | None:intergenic | 30.0% | |
| ATAAAAAGGCCTGATTATAC+TGG | + | chr4_1:83039623-83039642 | None:intergenic | 30.0% | |
| GAGACTGAAAGGAAAAAAAA+GGG | + | chr4_1:83039646-83039665 | None:intergenic | 30.0% | |
| AGAGACTGAAAGGAAAAAAA+AGG | + | chr4_1:83039647-83039666 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTCCTTTCAGTCTC+TGG | - | chr4_1:83039646-83039665 | Msa0578470:intron | 30.0% |
| AAAACAACATCTTGTGTACA+AGG | + | chr4_1:83040034-83040053 | None:intergenic | 30.0% | |
| ACTATATGCATATACCTTGA+GGG | + | chr4_1:83040066-83040085 | None:intergenic | 30.0% | |
| TAACTGATATGCAATGTCTA+TGG | + | chr4_1:83040197-83040216 | None:intergenic | 30.0% | |
| !! | GCCAAGAGAGTTTTTATTTA+TGG | - | chr4_1:83040380-83040399 | Msa0578470:intron | 30.0% |
| CCCATAAATAAAAACTCTCT+TGG | + | chr4_1:83040384-83040403 | None:intergenic | 30.0% | |
| GGCCTTTATAGATTTACATT+TGG | - | chr4_1:83040421-83040440 | Msa0578470:intron | 30.0% | |
| ! | TTCTTTTTATGCTTTGACAG+TGG | - | chr4_1:83040446-83040465 | Msa0578470:intron | 30.0% |
| ! | TCTTTTTATGCTTTGACAGT+GGG | - | chr4_1:83040447-83040466 | Msa0578470:intron | 30.0% |
| TAGTTATGTATAAAGCCTTG+TGG | + | chr4_1:83040503-83040522 | None:intergenic | 30.0% | |
| TTGATTCACTTCTCATAGAA+AGG | + | chr4_1:83040633-83040652 | None:intergenic | 30.0% | |
| CTAATAGTTCAGTTTACTTG+AGG | + | chr4_1:83040658-83040677 | None:intergenic | 30.0% | |
| AATATCACAACCTTATTCCT+GGG | + | chr4_1:83040949-83040968 | None:intergenic | 30.0% | |
| AAATATCACAACCTTATTCC+TGG | + | chr4_1:83040950-83040969 | None:intergenic | 30.0% | |
| TAAATTCCACAGTACTTGAT+CGG | + | chr4_1:83041101-83041120 | None:intergenic | 30.0% | |
| GAGTGTGAAGTTACCTTAAA+CGG | + | chr4_1:83038390-83038409 | None:intergenic | 35.0% | |
| TCATAGTTGAGGTTTAACTG+TGG | - | chr4_1:83038745-83038764 | Msa0578470:intron | 35.0% | |
| TCAAATCCAAAACAAGCTCA+TGG | + | chr4_1:83038896-83038915 | None:intergenic | 35.0% | |
| TTCATGACTCAACTCATGAA+AGG | - | chr4_1:83038967-83038986 | Msa0578470:intron | 35.0% | |
| AAGAGATTTCGTACCATTGT+TGG | - | chr4_1:83039090-83039109 | Msa0578470:intron | 35.0% | |
| CATCGTTCTATACATTTACG+TGG | - | chr4_1:83039463-83039482 | Msa0578470:intron | 35.0% | |
| GTTCTATACATTTACGTGGT+TGG | - | chr4_1:83039467-83039486 | Msa0578470:intron | 35.0% | |
| TTTCAAGCTTGATCTTCTTC+TGG | + | chr4_1:83039688-83039707 | None:intergenic | 35.0% | |
| AAACCATGGTCATAGGTATT+AGG | + | chr4_1:83039809-83039828 | None:intergenic | 35.0% | |
| GACTATATGCATATACCTTG+AGG | + | chr4_1:83040067-83040086 | None:intergenic | 35.0% | |
| ! | TTTCCTGCAGTAAAAGCTTT+TGG | - | chr4_1:83040226-83040245 | Msa0578470:intron | 35.0% |
| ! | ATTCCAAAAGCTTTTACTGC+AGG | + | chr4_1:83040232-83040251 | None:intergenic | 35.0% |
| TGTTGTAATGTATGCTGCAA+TGG | - | chr4_1:83040263-83040282 | Msa0578470:intron | 35.0% | |
| !! | ATGTATGCTGCAATGGATTA+AGG | - | chr4_1:83040270-83040289 | Msa0578470:intron | 35.0% |
| !! | TGTATGCTGCAATGGATTAA+GGG | - | chr4_1:83040271-83040290 | Msa0578470:intron | 35.0% |
| ! | GGATTAAGGGGGTTAAATTT+TGG | - | chr4_1:83040284-83040303 | Msa0578470:intron | 35.0% |
| !!! | TGACAGTGGGTTTTTTAATG+TGG | - | chr4_1:83040460-83040479 | Msa0578470:intron | 35.0% |
| !!! | AGTGGGTTTTTTAATGTGGA+TGG | - | chr4_1:83040464-83040483 | Msa0578470:intron | 35.0% |
| CAATTAGAGCAAGAGAACAA+AGG | + | chr4_1:83040540-83040559 | None:intergenic | 35.0% | |
| ACTGAACTATTAGATCATCC+AGG | - | chr4_1:83040665-83040684 | Msa0578470:intron | 35.0% | |
| CTGAACTATTAGATCATCCA+GGG | - | chr4_1:83040666-83040685 | Msa0578470:intron | 35.0% | |
| !!! | ATTGTGATAGTTTTTTGCCC+AGG | - | chr4_1:83040929-83040948 | Msa0578470:intron | 35.0% |
| !!! | TAGTTTTTTGCCCAGGAATA+AGG | - | chr4_1:83040936-83040955 | Msa0578470:intron | 35.0% |
| ! | TTCATGTTCCTTTTATGAGC+AGG | - | chr4_1:83041170-83041189 | Msa0578470:intron | 35.0% |
| AATTCAACACCAGAGAATGA+AGG | - | chr4_1:83041240-83041259 | Msa0578470:CDS | 35.0% | |
| TGAAGTTACCTTAAACGGAG+CGG | + | chr4_1:83038385-83038404 | None:intergenic | 40.0% | |
| GAACAACAGTCTCATTCACA+CGG | + | chr4_1:83038520-83038539 | None:intergenic | 40.0% | |
| TCTCGAAATTGTGCTTTGCA+TGG | - | chr4_1:83038613-83038632 | Msa0578470:intron | 40.0% | |
| ACACAATGGAGACTCTAAAC+TGG | + | chr4_1:83039579-83039598 | None:intergenic | 40.0% | |
| GTCTCCATTGTGTTTATGTG+TGG | - | chr4_1:83039586-83039605 | Msa0578470:intron | 40.0% | |
| TTATCTACCATTGTAGCTCC+TGG | + | chr4_1:83039767-83039786 | None:intergenic | 40.0% | |
| GCAAAGTAAACCATGGTCAT+AGG | + | chr4_1:83039816-83039835 | None:intergenic | 40.0% | |
| ATGTTCATTCCATGCAGAGT+CGG | - | chr4_1:83039907-83039926 | Msa0578470:CDS | 40.0% | |
| TACAAGGTGCAAGAAAAGAC+AGG | + | chr4_1:83040018-83040037 | None:intergenic | 40.0% | |
| TATGGCATTGTTTAAGCCAG+TGG | + | chr4_1:83040179-83040198 | None:intergenic | 40.0% | |
| !! | GTATGCTGCAATGGATTAAG+GGG | - | chr4_1:83040272-83040291 | Msa0578470:intron | 40.0% |
| !! | TATGCTGCAATGGATTAAGG+GGG | - | chr4_1:83040273-83040292 | Msa0578470:intron | 40.0% |
| !! | GGTTTATTGACTCTTCCACA+AGG | - | chr4_1:83040485-83040504 | Msa0578470:intron | 40.0% |
| ! | TTTTGCAAGACTATTCCACG+TGG | - | chr4_1:83040869-83040888 | Msa0578470:intron | 40.0% |
| TTTGCAAGACTATTCCACGT+GGG | - | chr4_1:83040870-83040889 | Msa0578470:intron | 40.0% | |
| ! | GTCTTCAACCTTTTAGCCAT+GGG | + | chr4_1:83041055-83041074 | None:intergenic | 40.0% |
| ! | AGTCTTCAACCTTTTAGCCA+TGG | + | chr4_1:83041056-83041075 | None:intergenic | 40.0% |
| TGGAACAACCTGCTCATAAA+AGG | + | chr4_1:83041181-83041200 | None:intergenic | 40.0% | |
| TATGAGCAGGTTGTTCCATT+TGG | - | chr4_1:83041183-83041202 | Msa0578470:intron | 40.0% | |
| ! | GCAGTCTGAAACTTTCCAAA+TGG | + | chr4_1:83041201-83041220 | None:intergenic | 40.0% |
| TTTGGAAAGTTTCAGACTGC+TGG | - | chr4_1:83041201-83041220 | Msa0578470:CDS | 40.0% | |
| AATTCATGGCCTTCATTCTC+TGG | + | chr4_1:83041252-83041271 | None:intergenic | 40.0% | |
| GGAGTTGAGATAGCAATTCA+TGG | + | chr4_1:83041266-83041285 | None:intergenic | 40.0% | |
| ! | TGCAACGACGAACAGATTTT+GGG | + | chr4_1:83041305-83041324 | None:intergenic | 40.0% |
| ! | ATGCAACGACGAACAGATTT+TGG | + | chr4_1:83041306-83041325 | None:intergenic | 40.0% |
| AATGGAGATTACGACGGAGA+GGG | + | chr4_1:83038272-83038291 | None:intergenic | 45.0% | |
| TGTTCCTGTAAACAGCTGCT+TGG | - | chr4_1:83038535-83038554 | Msa0578470:CDS | 45.0% | |
| GTTCCTGTAAACAGCTGCTT+GGG | - | chr4_1:83038536-83038555 | Msa0578470:CDS | 45.0% | |
| AAACCCAAGCAGCTGTTTAC+AGG | + | chr4_1:83038542-83038561 | None:intergenic | 45.0% | |
| CCAAGACTATGAGCCAACAA+TGG | + | chr4_1:83039106-83039125 | None:intergenic | 45.0% | |
| !! | CCATTGTTGGCTCATAGTCT+TGG | - | chr4_1:83039103-83039122 | Msa0578470:intron | 45.0% |
| TGGTTGGAGCTTTCACAGTA+GGG | - | chr4_1:83039483-83039502 | Msa0578470:intron | 45.0% | |
| TACTCCTAGTATGCATAGGC+AGG | - | chr4_1:83039540-83039559 | Msa0578470:intron | 45.0% | |
| TTGTAGAGCCAGAGACTGAA+AGG | + | chr4_1:83039657-83039676 | None:intergenic | 45.0% | |
| ! | GCTGATTCTCATGTTGTTGC+AGG | - | chr4_1:83039734-83039753 | Msa0578470:CDS | 45.0% |
| AAGTGAACCAGGAGCTACAA+TGG | - | chr4_1:83039757-83039776 | Msa0578470:CDS | 45.0% | |
| GAGCCTAATACCTATGACCA+TGG | - | chr4_1:83039803-83039822 | Msa0578470:CDS | 45.0% | |
| CCTTGTCGCAAAGTAAACCA+TGG | + | chr4_1:83039823-83039842 | None:intergenic | 45.0% | |
| CCATGGTTTACTTTGCGACA+AGG | - | chr4_1:83039820-83039839 | Msa0578470:CDS | 45.0% | |
| TTGCTTCTCCACACAACTTG+CGG | + | chr4_1:83039888-83039907 | None:intergenic | 45.0% | |
| GAGTCGGATTGCAGTACTAT+AGG | - | chr4_1:83039923-83039942 | Msa0578470:intron | 45.0% | |
| ! | GTTTTTCATGCTCACCCTCA+AGG | - | chr4_1:83040049-83040068 | Msa0578470:CDS | 45.0% |
| CCAGTGTACATCAATCAGCA+GGG | - | chr4_1:83040355-83040374 | Msa0578470:intron | 45.0% | |
| CAGTGTACATCAATCAGCAG+GGG | - | chr4_1:83040356-83040375 | Msa0578470:intron | 45.0% | |
| TGGGACTAGAGTATGATGCA+TGG | - | chr4_1:83040400-83040419 | Msa0578470:intron | 45.0% | |
| GAACAAAGGCTCAGGTATCA+TGG | + | chr4_1:83040526-83040545 | None:intergenic | 45.0% | |
| TTAGATCATCCAGGGACAGA+AGG | - | chr4_1:83040674-83040693 | Msa0578470:intron | 45.0% | |
| AAGATTGTTCCTTCTGTCCC+TGG | + | chr4_1:83040686-83040705 | None:intergenic | 45.0% | |
| TAGAATTAGTATCGCCCACG+TGG | + | chr4_1:83040887-83040906 | None:intergenic | 45.0% | |
| GGTCAGTGATCAGAACTTCA+AGG | - | chr4_1:83041003-83041022 | Msa0578470:intron | 45.0% | |
| TTGAAGACTGATGCAGCTGA+TGG | - | chr4_1:83041067-83041086 | Msa0578470:intron | 45.0% | |
| !!! | GACGAACAGATTTTGGGACA+CGG | + | chr4_1:83041299-83041318 | None:intergenic | 45.0% |
| TGTTCGTCGTTGCATTCTCA+GGG | - | chr4_1:83041311-83041330 | Msa0578470:CDS | 45.0% | |
| GAATGGAGATTACGACGGAG+AGG | + | chr4_1:83038273-83038292 | None:intergenic | 50.0% | |
| TCGGCGAATGGAGATTACGA+CGG | + | chr4_1:83038278-83038297 | None:intergenic | 50.0% | |
| GGAGGAGTCGGAAAAAGAAG+CGG | + | chr4_1:83038331-83038350 | None:intergenic | 50.0% | |
| AACAGTCTCATTCACACGGC+TGG | + | chr4_1:83038516-83038535 | None:intergenic | 50.0% | |
| GTGGTTGGAGCTTTCACAGT+AGG | - | chr4_1:83039482-83039501 | Msa0578470:intron | 50.0% | |
| CTGACCTGCCTATGCATACT+AGG | + | chr4_1:83039547-83039566 | None:intergenic | 50.0% | |
| !! | CAGTCTCTGGCTCTACAAGA+TGG | - | chr4_1:83039659-83039678 | Msa0578470:CDS | 50.0% |
| AGCTGCGCTCTCTAACATAG+GGG | + | chr4_1:83039717-83039736 | None:intergenic | 50.0% | |
| CAGCTGCGCTCTCTAACATA+GGG | + | chr4_1:83039718-83039737 | None:intergenic | 50.0% | |
| TCAGCTGCGCTCTCTAACAT+AGG | + | chr4_1:83039719-83039738 | None:intergenic | 50.0% | |
| GTTGTTGCAGGAAGTGAACC+AGG | - | chr4_1:83039746-83039765 | Msa0578470:CDS | 50.0% | |
| GACAAGGAGATTCATGCCAG+CGG | - | chr4_1:83039836-83039855 | Msa0578470:CDS | 50.0% | |
| ACAAGGAGATTCATGCCAGC+GGG | - | chr4_1:83039837-83039856 | Msa0578470:CDS | 50.0% | |
| ACAACTTGCGGCTGACATGT+TGG | + | chr4_1:83039876-83039895 | None:intergenic | 50.0% | |
| TACTGCAATCCGACTCTGCA+TGG | + | chr4_1:83039919-83039938 | None:intergenic | 50.0% | |
| GCTGATTGATGTACACTGGC+TGG | + | chr4_1:83040354-83040373 | None:intergenic | 50.0% | |
| GCCAGTGTACATCAATCAGC+AGG | - | chr4_1:83040354-83040373 | Msa0578470:intron | 50.0% | |
| ! | CCCTGCTGATTGATGTACAC+TGG | + | chr4_1:83040358-83040377 | None:intergenic | 50.0% |
| GAGCAAGAGAACAAAGGCTC+AGG | + | chr4_1:83040534-83040553 | None:intergenic | 50.0% | |
| !! | CAAGCACCGATCAAGTACTG+TGG | - | chr4_1:83041092-83041111 | Msa0578470:intron | 50.0% |
| TTGGGACACGGAAACTCTCT+GGG | + | chr4_1:83041287-83041306 | None:intergenic | 50.0% | |
| ! | TTTGGGACACGGAAACTCTC+TGG | + | chr4_1:83041288-83041307 | None:intergenic | 50.0% |
| CTGTTCGTCGTTGCATTCTC+AGG | - | chr4_1:83041310-83041329 | Msa0578470:CDS | 50.0% | |
| GTCGTTGCATTCTCAGGGAT+AGG | - | chr4_1:83041316-83041335 | Msa0578470:CDS | 50.0% | |
| GAGTCAACTCGAGATCGGAG+GGG | + | chr4_1:83038305-83038324 | None:intergenic | 55.0% | |
| CGAGTCAACTCGAGATCGGA+GGG | + | chr4_1:83038306-83038325 | None:intergenic | 55.0% | |
| GGAGCGAGTCAACTCGAGAT+CGG | + | chr4_1:83038310-83038329 | None:intergenic | 55.0% | |
| GCATGGCGATTAAGCTTCCG+TGG | - | chr4_1:83038630-83038649 | Msa0578470:intron | 55.0% | |
| GATCTGTCCAGCGTCTAGAC+TGG | + | chr4_1:83039390-83039409 | None:intergenic | 55.0% | |
| CATGTCAGCCGCAAGTTGTG+TGG | - | chr4_1:83039877-83039896 | Msa0578470:CDS | 55.0% | |
| ! | CATGGGCATGCTGCTTGAAC+AGG | + | chr4_1:83041038-83041057 | None:intergenic | 55.0% |
| CTGTTCAAGCAGCATGCCCA+TGG | - | chr4_1:83041036-83041055 | Msa0578470:intron | 55.0% | |
| GCAGCATGCCCATGGCTAAA+AGG | - | chr4_1:83041044-83041063 | Msa0578470:intron | 55.0% | |
| TCGAGATCGGAGGGGAACGT+CGG | + | chr4_1:83038297-83038316 | None:intergenic | 60.0% | |
| GCGAGTCAACTCGAGATCGG+AGG | + | chr4_1:83038307-83038326 | None:intergenic | 60.0% | |
| ACCAGGACCAGTCTAGACGC+TGG | - | chr4_1:83039380-83039399 | Msa0578470:intron | 60.0% | |
| ! | TCCAGCGTCTAGACTGGTCC+TGG | + | chr4_1:83039384-83039403 | None:intergenic | 60.0% |
| GGCAAATGCTGAACTCCCGC+TGG | + | chr4_1:83039855-83039874 | None:intergenic | 60.0% | |
| ACCACCGCCGACAACACCTC+CGG | - | chr4_1:83038354-83038373 | Msa0578470:CDS | 65.0% | |
| CTTAAACGGAGCGGCGTCGC+CGG | + | chr4_1:83038376-83038395 | None:intergenic | 65.0% | |
| CGGAGGGGAACGTCGGCGAA+TGG | + | chr4_1:83038290-83038309 | None:intergenic | 70.0% | |
| ! | GGTGTTGTCGGCGGTGGTGG+CGG | + | chr4_1:83038352-83038371 | None:intergenic | 70.0% |
| !! | GGAGGTGTTGTCGGCGGTGG+TGG | + | chr4_1:83038355-83038374 | None:intergenic | 70.0% |
| !! | GTCGCCGGAGGTGTTGTCGG+CGG | + | chr4_1:83038361-83038380 | None:intergenic | 70.0% |
| !! | GGCGTCGCCGGAGGTGTTGT+CGG | + | chr4_1:83038364-83038383 | None:intergenic | 70.0% |
| CGGCGACGCCGCTCCGTTTA+AGG | - | chr4_1:83038374-83038393 | Msa0578470:CDS | 70.0% | |
| !! | GGCGGTGGTGGCGGAGGAGT+CGG | + | chr4_1:83038343-83038362 | None:intergenic | 75.0% |
| !! | GTTGTCGGCGGTGGTGGCGG+AGG | + | chr4_1:83038349-83038368 | None:intergenic | 75.0% |
| !! | GCCGGAGGTGTTGTCGGCGG+TGG | + | chr4_1:83038358-83038377 | None:intergenic | 75.0% |
| AAACGGAGCGGCGTCGCCGG+AGG | + | chr4_1:83038373-83038392 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 83038255 | 83041341 | 83038255 | ID=Msa0578470;Name=Msa0578470 |
| chr4_1 | mRNA | 83038255 | 83041341 | 83038255 | ID=Msa0578470-mRNA-1;Parent=Msa0578470;Name=Msa0578470-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|1|1|5|0|284 |
| chr4_1 | exon | 83041201 | 83041341 | 83041201 | ID=Msa0578470-mRNA-1:exon:30233;Parent=Msa0578470-mRNA-1 |
| chr4_1 | exon | 83040035 | 83040211 | 83040035 | ID=Msa0578470-mRNA-1:exon:30232;Parent=Msa0578470-mRNA-1 |
| chr4_1 | exon | 83039652 | 83039934 | 83039652 | ID=Msa0578470-mRNA-1:exon:30231;Parent=Msa0578470-mRNA-1 |
| chr4_1 | exon | 83038491 | 83038594 | 83038491 | ID=Msa0578470-mRNA-1:exon:30230;Parent=Msa0578470-mRNA-1 |
| chr4_1 | exon | 83038255 | 83038404 | 83038255 | ID=Msa0578470-mRNA-1:exon:30229;Parent=Msa0578470-mRNA-1 |
| chr4_1 | CDS | 83041201 | 83041341 | 83041201 | ID=Msa0578470-mRNA-1:cds;Parent=Msa0578470-mRNA-1 |
| chr4_1 | CDS | 83040035 | 83040211 | 83040035 | ID=Msa0578470-mRNA-1:cds;Parent=Msa0578470-mRNA-1 |
| chr4_1 | CDS | 83039652 | 83039934 | 83039652 | ID=Msa0578470-mRNA-1:cds;Parent=Msa0578470-mRNA-1 |
| chr4_1 | CDS | 83038491 | 83038594 | 83038491 | ID=Msa0578470-mRNA-1:cds;Parent=Msa0578470-mRNA-1 |
| chr4_1 | CDS | 83038255 | 83038404 | 83038255 | ID=Msa0578470-mRNA-1:cds;Parent=Msa0578470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
