Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1290900 | XP_024627803.1 | 98.336 | 541 | 8 | 1 | 1 | 540 | 1 | 541 | 0.0 | 1098 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1290900 | sp|C7A2A0|BALDH_ANTMA | 81.461 | 534 | 96 | 3 | 10 | 540 | 1 | 534 | 0.0 | 915 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1290900 | A0A072U2G7 | 98.336 | 541 | 8 | 1 | 1 | 540 | 1 | 541 | 0.0 | 1098 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037180 | Msa1290900 | 0.800552 | 1.365886e-48 | -8.615850e-47 |
| Msa0081610 | Msa1290900 | -0.816142 | 6.440677e-52 | -8.615850e-47 |
| Msa0092220 | Msa1290900 | 0.810439 | 1.152002e-50 | -8.615850e-47 |
| Msa0653840 | Msa1290900 | 0.814930 | 1.198543e-51 | -8.615850e-47 |
| Msa0683840 | Msa1290900 | 0.803060 | 4.174277e-49 | -8.615850e-47 |
| Msa0737030 | Msa1290900 | 0.804435 | 2.162960e-49 | -8.615850e-47 |
| Msa0796580 | Msa1290900 | -0.802833 | 4.649758e-49 | -8.615850e-47 |
| Msa0138990 | Msa1290900 | -0.835470 | 1.647430e-56 | -8.615850e-47 |
| Msa0173950 | Msa1290900 | -0.824536 | 7.653098e-54 | -8.615850e-47 |
| Msa0177320 | Msa1290900 | 0.800748 | 1.246231e-48 | -8.615850e-47 |
| Msa0209140 | Msa1290900 | 0.816402 | 5.634744e-52 | -8.615850e-47 |
| Msa0220990 | Msa1290900 | 0.805944 | 1.045202e-49 | -8.615850e-47 |
| Msa1249600 | Msa1290900 | 0.920147 | 1.849171e-87 | -8.615850e-47 |
| Msa1265020 | Msa1290900 | 0.853224 | 2.752219e-61 | -8.615850e-47 |
| Msa1273620 | Msa1290900 | -0.846761 | 1.772316e-59 | -8.615850e-47 |
| Msa1284000 | Msa1290900 | 0.801218 | 9.986282e-49 | -8.615850e-47 |
| Msa1290900 | Msa1311600 | -0.825762 | 3.928330e-54 | -8.615850e-47 |
| Msa1290900 | Msa1323070 | 0.861254 | 1.167416e-63 | -8.615850e-47 |
| Msa1290900 | Msa1326180 | 0.943260 | 1.657272e-102 | -8.615850e-47 |
| Msa1290900 | Msa1337850 | 0.844920 | 5.604821e-59 | -8.615850e-47 |
| Msa1290900 | Msa1439250 | 0.843579 | 1.284866e-58 | -8.615850e-47 |
| Msa1290900 | Msa1439270 | 0.817292 | 3.556122e-52 | -8.615850e-47 |
| Msa1290900 | Msa1458090 | 0.812128 | 4.954169e-51 | -8.615850e-47 |
| Msa0389080 | Msa1290900 | -0.846826 | 1.702066e-59 | -8.615850e-47 |
| Msa0293720 | Msa1290900 | 0.801836 | 7.461931e-49 | -8.615850e-47 |
| Msa0312640 | Msa1290900 | 0.800405 | 1.463485e-48 | -8.615850e-47 |
| Msa0332780 | Msa1290900 | 0.817723 | 2.843556e-52 | -8.615850e-47 |
| Msa0334450 | Msa1290900 | -0.802374 | 5.784194e-49 | -8.615850e-47 |
| Msa1129120 | Msa1290900 | -0.804729 | 1.878139e-49 | -8.615850e-47 |
| Msa1193910 | Msa1290900 | 0.960656 | 8.359204e-119 | -8.615850e-47 |
| Msa1221630 | Msa1290900 | 0.807256 | 5.523851e-50 | -8.615850e-47 |
| Msa1221960 | Msa1290900 | 0.818012 | 2.447032e-52 | -8.615850e-47 |
| Msa0504700 | Msa1290900 | 0.801061 | 1.075398e-48 | -8.615850e-47 |
| Msa0528930 | Msa1290900 | 0.809512 | 1.824345e-50 | -8.615850e-47 |
| Msa0856020 | Msa1290900 | 0.804809 | 1.807160e-49 | -8.615850e-47 |
| Msa0969380 | Msa1290900 | 0.831978 | 1.228705e-55 | -8.615850e-47 |
| Msa0969590 | Msa1290900 | 0.801669 | 8.074965e-49 | -8.615850e-47 |
| Msa0969720 | Msa1290900 | 0.831139 | 1.977438e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1290900 | MtrunA17_Chr8g0365221 | 98.336 | 541 | 8 | 1 | 1 | 540 | 1 | 541 | 0.0 | 1098 |
| Msa1290900 | MtrunA17_Chr4g0059221 | 80.716 | 503 | 96 | 1 | 38 | 540 | 43 | 544 | 0.0 | 873 |
| Msa1290900 | MtrunA17_Chr3g0117861 | 75.138 | 543 | 122 | 2 | 10 | 540 | 1 | 542 | 0.0 | 870 |
| Msa1290900 | MtrunA17_Chr8g0390631 | 55.804 | 491 | 217 | 0 | 50 | 540 | 4 | 494 | 0.0 | 582 |
| Msa1290900 | MtrunA17_Chr6g0485301 | 57.851 | 484 | 204 | 0 | 57 | 540 | 19 | 502 | 0.0 | 580 |
| Msa1290900 | MtrunA17_Chr8g0390651 | 54.545 | 484 | 220 | 0 | 57 | 540 | 20 | 503 | 0.0 | 565 |
| Msa1290900 | MtrunA17_Chr6g0485311 | 55.785 | 484 | 214 | 0 | 57 | 540 | 17 | 500 | 0.0 | 555 |
| Msa1290900 | MtrunA17_Chr3g0118121 | 38.945 | 493 | 288 | 6 | 57 | 539 | 5 | 494 | 1.74e-114 | 348 |
| Msa1290900 | MtrunA17_Chr4g0059521 | 40.404 | 495 | 282 | 6 | 55 | 539 | 3 | 494 | 4.45e-112 | 342 |
| Msa1290900 | MtrunA17_Chr3g0118081 | 38.153 | 498 | 291 | 6 | 54 | 539 | 32 | 524 | 1.94e-108 | 334 |
| Msa1290900 | MtrunA17_Chr2g0310091 | 39.958 | 473 | 279 | 4 | 59 | 530 | 61 | 529 | 5.45e-104 | 322 |
| Msa1290900 | MtrunA17_Chr1g0149961 | 31.762 | 488 | 305 | 10 | 65 | 539 | 21 | 493 | 7.01e-61 | 208 |
| Msa1290900 | MtrunA17_Chr2g0294411 | 30.273 | 512 | 318 | 11 | 50 | 531 | 26 | 528 | 6.42e-60 | 208 |
| Msa1290900 | MtrunA17_Chr4g0074171 | 31.148 | 488 | 308 | 10 | 65 | 539 | 21 | 493 | 2.58e-58 | 201 |
| Msa1290900 | MtrunA17_Chr2g0300801 | 30.655 | 473 | 309 | 11 | 66 | 526 | 23 | 488 | 5.04e-58 | 201 |
| Msa1290900 | MtrunA17_Chr2g0279751 | 31.276 | 486 | 312 | 11 | 63 | 536 | 18 | 493 | 2.30e-54 | 191 |
| Msa1290900 | MtrunA17_Chr4g0049641 | 31.200 | 500 | 307 | 13 | 58 | 536 | 37 | 520 | 5.68e-53 | 188 |
| Msa1290900 | MtrunA17_Chr8g0372381 | 29.280 | 403 | 255 | 12 | 134 | 531 | 62 | 439 | 5.16e-35 | 137 |
| Msa1290900 | MtrunA17_Chr8g0384741 | 27.235 | 481 | 326 | 14 | 61 | 531 | 33 | 499 | 5.47e-31 | 126 |
| Msa1290900 | MtrunA17_Chr8g0365101 | 64.773 | 88 | 12 | 1 | 425 | 512 | 20 | 88 | 1.05e-30 | 115 |
| Msa1290900 | MtrunA17_Chr3g0124811 | 27.169 | 438 | 299 | 13 | 103 | 531 | 22 | 448 | 1.37e-29 | 122 |
| Msa1290900 | MtrunA17_Chr2g0328781 | 28.884 | 457 | 288 | 16 | 93 | 530 | 14 | 452 | 9.00e-29 | 119 |
| Msa1290900 | MtrunA17_Chr1g0159811 | 27.735 | 393 | 266 | 10 | 133 | 516 | 48 | 431 | 6.98e-28 | 117 |
| Msa1290900 | MtrunA17_Chr4g0032441 | 28.469 | 418 | 263 | 15 | 133 | 531 | 38 | 438 | 1.08e-20 | 95.1 |
| Msa1290900 | MtrunA17_Chr0c02g0489831 | 82.353 | 34 | 6 | 0 | 304 | 337 | 1 | 34 | 4.45e-13 | 63.9 |
| Msa1290900 | MtrunA17_Chr4g0060261 | 25.304 | 411 | 270 | 15 | 63 | 450 | 54 | 450 | 5.25e-12 | 68.6 |
| Msa1290900 | MtrunA17_Chr7g0229421 | 79.412 | 34 | 7 | 0 | 304 | 337 | 1 | 34 | 7.86e-12 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1290900 | AT3G48000.1 | 76.866 | 536 | 121 | 2 | 6 | 540 | 5 | 538 | 0.0 | 874 |
| Msa1290900 | AT1G23800.1 | 81.275 | 502 | 94 | 0 | 39 | 540 | 33 | 534 | 0.0 | 870 |
| Msa1290900 | AT1G23800.2 | 82.081 | 346 | 62 | 0 | 39 | 384 | 33 | 378 | 0.0 | 612 |
| Msa1290900 | AT3G24503.1 | 55.556 | 486 | 215 | 1 | 56 | 540 | 16 | 501 | 0.0 | 561 |
| Msa1290900 | AT3G48170.1 | 41.532 | 496 | 277 | 6 | 54 | 539 | 2 | 494 | 9.25e-129 | 385 |
| Msa1290900 | AT1G74920.1 | 40.900 | 489 | 276 | 6 | 61 | 539 | 9 | 494 | 1.23e-122 | 370 |
| Msa1290900 | AT1G74920.2 | 41.104 | 489 | 270 | 7 | 61 | 539 | 9 | 489 | 5.67e-121 | 365 |
| Msa1290900 | AT1G79440.1 | 39.958 | 473 | 279 | 4 | 59 | 530 | 52 | 520 | 1.07e-102 | 319 |
| Msa1290900 | AT2G24270.3 | 31.911 | 492 | 299 | 11 | 65 | 539 | 21 | 493 | 1.32e-58 | 202 |
| Msa1290900 | AT2G24270.1 | 31.911 | 492 | 299 | 11 | 65 | 539 | 21 | 493 | 1.32e-58 | 202 |
| Msa1290900 | AT2G24270.4 | 31.911 | 492 | 299 | 11 | 65 | 539 | 21 | 493 | 1.55e-58 | 202 |
| Msa1290900 | AT2G24270.2 | 31.911 | 492 | 299 | 11 | 65 | 539 | 61 | 533 | 4.31e-58 | 202 |
| Msa1290900 | AT1G54100.2 | 31.049 | 467 | 300 | 12 | 72 | 526 | 31 | 487 | 7.47e-58 | 201 |
| Msa1290900 | AT1G54100.1 | 31.049 | 467 | 300 | 12 | 72 | 526 | 31 | 487 | 7.47e-58 | 201 |
| Msa1290900 | AT3G66658.1 | 28.684 | 509 | 330 | 10 | 50 | 531 | 26 | 528 | 8.36e-58 | 202 |
| Msa1290900 | AT3G66658.2 | 28.684 | 509 | 330 | 10 | 50 | 531 | 26 | 528 | 2.49e-57 | 201 |
| Msa1290900 | AT2G14170.2 | 33.030 | 439 | 277 | 10 | 63 | 493 | 8 | 437 | 3.92e-57 | 199 |
| Msa1290900 | AT2G14170.3 | 33.030 | 439 | 277 | 10 | 63 | 493 | 117 | 546 | 1.33e-56 | 199 |
| Msa1290900 | AT2G14170.1 | 33.030 | 439 | 277 | 10 | 63 | 493 | 117 | 546 | 1.85e-56 | 199 |
| Msa1290900 | AT1G44170.1 | 29.062 | 437 | 292 | 12 | 103 | 531 | 16 | 442 | 3.69e-38 | 146 |
| Msa1290900 | AT1G44170.2 | 29.062 | 437 | 292 | 12 | 103 | 531 | 16 | 442 | 3.69e-38 | 146 |
| Msa1290900 | AT1G44170.3 | 29.971 | 347 | 233 | 8 | 188 | 531 | 40 | 379 | 1.10e-33 | 133 |
| Msa1290900 | AT4G36250.1 | 27.912 | 455 | 297 | 16 | 93 | 531 | 2 | 441 | 1.13e-31 | 128 |
| Msa1290900 | AT4G34240.3 | 28.736 | 348 | 236 | 8 | 188 | 531 | 24 | 363 | 3.26e-28 | 117 |
| Msa1290900 | AT4G34240.4 | 28.736 | 348 | 236 | 8 | 188 | 531 | 151 | 490 | 2.36e-27 | 116 |
| Msa1290900 | AT4G34240.1 | 28.736 | 348 | 236 | 8 | 188 | 531 | 166 | 505 | 2.48e-27 | 116 |
| Msa1290900 | AT4G34240.2 | 38.065 | 155 | 91 | 4 | 188 | 341 | 166 | 316 | 4.62e-15 | 77.8 |
| Msa1290900 | AT5G62530.1 | 25.587 | 426 | 257 | 18 | 60 | 450 | 53 | 453 | 3.73e-11 | 66.2 |
Find 126 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGGTGGGAATGGTTATC+TGG | 0.219323 | 8_3:+46089192 | Msa1290900:intron |
| CCACCAAGCTCCAAAGTTAC+TGG | 0.253675 | 8_3:-46090888 | None:intergenic |
| ACAAGGGTACACAATGTTAT+TGG | 0.266650 | 8_3:-46088257 | None:intergenic |
| GCATCTTCGCAAACAATAAA+TGG | 0.267947 | 8_3:-46090918 | None:intergenic |
| AGTGGACAGGGCAGAGAAAA+AGG | 0.274646 | 8_3:+46092211 | Msa1290900:CDS |
| TTTACTGGTTCAACCGATAC+TGG | 0.279461 | 8_3:+46090825 | Msa1290900:CDS |
| CACGAACCAATTGGCGTTGC+TGG | 0.282957 | 8_3:+46090043 | Msa1290900:CDS |
| GTCTCACTTGAATTTCAATA+TGG | 0.295168 | 8_3:-46091737 | None:intergenic |
| TCTTCTCATGTTTGCTTGGA+AGG | 0.308492 | 8_3:+46090090 | Msa1290900:CDS |
| CTCATGTTTGCTTGGAAGGT+TGG | 0.312209 | 8_3:+46090094 | Msa1290900:CDS |
| GTAATATAGATCAATAAATA+TGG | 0.314788 | 8_3:+46092313 | Msa1290900:three_prime_UTR |
| GCACTTGAGACTTGGGATAA+TGG | 0.315242 | 8_3:+46089799 | Msa1290900:CDS |
| TTTGATGCTGCAATTCCTTT+TGG | 0.326962 | 8_3:+46092175 | Msa1290900:CDS |
| CATTGAAAGTTGGAACAGTT+TGG | 0.327575 | 8_3:+46092134 | Msa1290900:CDS |
| ATCTGAGCAGATTGTTCATA+TGG | 0.331515 | 8_3:-46089826 | None:intergenic |
| ATTGCAAAAGAAGAGATATT+TGG | 0.335473 | 8_3:+46091703 | Msa1290900:CDS |
| CACTTGAGACTTGGGATAAT+GGG | 0.341726 | 8_3:+46089800 | Msa1290900:CDS |
| TACTGTCTTCTCAAATGTTC+AGG | 0.364449 | 8_3:+46091564 | Msa1290900:CDS |
| CTACAAATTTGCCATCGATT+AGG | 0.366038 | 8_3:-46089300 | None:intergenic |
| ATTGAAAGTTGGAACAGTTT+GGG | 0.367636 | 8_3:+46092135 | Msa1290900:CDS |
| ACTTGCACCGATGGTTTAAT+CGG | 0.379104 | 8_3:-46089262 | None:intergenic |
| ATTAGATCTGGCGTTGATAA+TGG | 0.379386 | 8_3:+46091484 | Msa1290900:CDS |
| ATGCTTATCTTCTATAAAGT+TGG | 0.389241 | 8_3:+46088232 | Msa1290900:five_prime_UTR |
| AAAGCAATAGATGCAGTATC+AGG | 0.390480 | 8_3:-46092483 | None:intergenic |
| CAATCTTAAGCCAGTAACTT+TGG | 0.390920 | 8_3:+46090878 | Msa1290900:CDS |
| AGAGCAAACAATTCAAAGTA+TGG | 0.393602 | 8_3:+46092055 | Msa1290900:CDS |
| TCCCTCTTCTCATGTTTGCT+TGG | 0.401686 | 8_3:+46090086 | Msa1290900:CDS |
| CAGGGACAATGTTGCTGTGC+CGG | 0.407196 | 8_3:+46091076 | Msa1290900:intron |
| TGGAAAAGTTGTCCTTCAAT+TGG | 0.409434 | 8_3:+46090845 | Msa1290900:CDS |
| AATTTCAATATGGTTTGTAC+TGG | 0.414009 | 8_3:-46091727 | None:intergenic |
| TGTTCTGTTCCTGACTTGAA+TGG | 0.414781 | 8_3:-46091184 | None:intergenic |
| TGCAATGTCTGCACATGATA+TGG | 0.425470 | 8_3:-46090022 | None:intergenic |
| TACCAGCATAGTAACGAATT+AGG | 0.432343 | 8_3:-46089870 | None:intergenic |
| AGCAATGATCATACATAAGC+TGG | 0.439518 | 8_3:-46089598 | None:intergenic |
| ATCTGACCAGCAACGCCAAT+TGG | 0.441277 | 8_3:-46090049 | None:intergenic |
| CATACATAAGCTGGAAACTT+AGG | 0.447847 | 8_3:-46089589 | None:intergenic |
| CAGACATTGCACGAACCAAT+TGG | 0.452449 | 8_3:+46090034 | Msa1290900:CDS |
| AATGGCGCTACACTTGAAAC+TGG | 0.456541 | 8_3:+46091502 | Msa1290900:CDS |
| CGCCTAATTCGTTACTATGC+TGG | 0.456816 | 8_3:+46089868 | Msa1290900:CDS |
| CGAATTAGGCGAACCAGCAT+TGG | 0.458512 | 8_3:-46089856 | None:intergenic |
| AAATTGCAGCACTTGAGACT+TGG | 0.458601 | 8_3:+46089791 | Msa1290900:CDS |
| AGCAGACAATGGCGTCTGTT+CGG | 0.461854 | 8_3:-46090158 | None:intergenic |
| TTGTAGGCCGGACTTCCTGC+TGG | 0.465059 | 8_3:+46090331 | Msa1290900:intron |
| AAGCCAGTAACTTTGGAGCT+TGG | 0.466523 | 8_3:+46090885 | Msa1290900:CDS |
| GCAATCACTTCCCCTGTCCT+TGG | 0.470122 | 8_3:-46089487 | None:intergenic |
| TTGACTAGAGCATTGAAAGT+TGG | 0.470715 | 8_3:+46092124 | Msa1290900:CDS |
| GCACGCAAAGCATTTGATCA+AGG | 0.473740 | 8_3:+46089559 | Msa1290900:CDS |
| GGTTGGGCAGATAAGATTCA+TGG | 0.473931 | 8_3:+46089977 | Msa1290900:intron |
| TTGAATATAATATCTGGCTT+TGG | 0.484962 | 8_3:+46090358 | Msa1290900:CDS |
| CTTTGCCTTGTTCTTTAACC+AGG | 0.485383 | 8_3:+46090971 | Msa1290900:CDS |
| CCAGTAACTTTGGAGCTTGG+TGG | 0.486152 | 8_3:+46090888 | Msa1290900:CDS |
| AATGTACTTTCAGGTGGGAA+TGG | 0.487239 | 8_3:+46089184 | Msa1290900:intron |
| AGGGACAATGTTGCTGTGCC+GGG | 0.490364 | 8_3:+46091077 | Msa1290900:intron |
| TCAAAGTATGGTCTTGCAGC+AGG | 0.491649 | 8_3:+46092067 | Msa1290900:CDS |
| TAGTCACATGGATGTTGATA+AGG | 0.496076 | 8_3:+46090405 | Msa1290900:CDS |
| TCAGATTGAAATTCCAATGC+TGG | 0.496455 | 8_3:+46089843 | Msa1290900:CDS |
| TCTGGCTTTGGTCCAACTGC+AGG | 0.500521 | 8_3:+46090370 | Msa1290900:CDS |
| TGCTTTGCGTGCAGCTGCAA+CGG | 0.505710 | 8_3:-46089548 | None:intergenic |
| CCAACATTGGATCCAAGGAC+AGG | 0.507885 | 8_3:+46089475 | Msa1290900:CDS |
| CCTGTCCTTGGATCCAATGT+TGG | 0.511997 | 8_3:-46089475 | None:intergenic |
| GGTGTGTTGAATATAATATC+TGG | 0.513993 | 8_3:+46090352 | Msa1290900:CDS |
| CTCATCTTATATCCACCAAA+AGG | 0.515568 | 8_3:-46092190 | None:intergenic |
| ATATTGAAGTATATTAGATC+TGG | 0.517435 | 8_3:+46091472 | Msa1290900:CDS |
| CAGTAACTTTGGAGCTTGGT+GGG | 0.518287 | 8_3:+46090889 | Msa1290900:CDS |
| CAACACACCAGCAGGAAGTC+CGG | 0.521409 | 8_3:-46090338 | None:intergenic |
| CTTCTTCAATCAAAATCTCA+AGG | 0.522051 | 8_3:+46088324 | Msa1290900:CDS |
| GGGCTCACAGTTCCAGCTGA+TGG | 0.526400 | 8_3:+46089998 | Msa1290900:CDS |
| ACGTGTGCATGAGGAGTTTG+TGG | 0.530875 | 8_3:+46091120 | Msa1290900:CDS |
| GTAGGAGATCCATTCAAGTC+AGG | 0.532267 | 8_3:+46091175 | Msa1290900:CDS |
| TCAGGTGGGAATGGTTATCT+GGG | 0.532469 | 8_3:+46089193 | Msa1290900:intron |
| ATTATATTCAACACACCAGC+AGG | 0.533022 | 8_3:-46090346 | None:intergenic |
| AATTGCAGCACTTGAGACTT+GGG | 0.535187 | 8_3:+46089792 | Msa1290900:CDS |
| AGGTAAAACATTTCCAACAT+TGG | 0.536576 | 8_3:+46089462 | Msa1290900:intron |
| TGGATATAAGATGAGTGGAC+AGG | 0.537139 | 8_3:+46092198 | Msa1290900:CDS |
| AGGAACAGAACAAGGTCCTC+AGG | 0.538549 | 8_3:+46091195 | Msa1290900:CDS |
| ACAGATGCTCAAAGCCATGC+TGG | 0.538877 | 8_3:-46092292 | None:intergenic |
| ATGAGAAGAGGGAAGTTCCA+TGG | 0.539559 | 8_3:-46090076 | None:intergenic |
| CATTTCCAACATTGGATCCA+AGG | 0.543139 | 8_3:+46089470 | Msa1290900:CDS |
| ACATGATATGGTCCATCAGC+TGG | 0.548696 | 8_3:-46090010 | None:intergenic |
| GTGTGGTCGACTTGCACCGA+TGG | 0.550868 | 8_3:-46089271 | None:intergenic |
| GCAAGAGCAGCACCTGCAGT+TGG | 0.553046 | 8_3:-46090382 | None:intergenic |
| TGCTGCTCTTGCTAGTCACA+TGG | 0.554143 | 8_3:+46090393 | Msa1290900:CDS |
| CACGCAAAGCATTTGATCAA+GGG | 0.557713 | 8_3:+46089560 | Msa1290900:CDS |
| TACAGCACGTTTCAAAGCAC+GGG | 0.560601 | 8_3:-46091155 | None:intergenic |
| CAACATTGGATCCAAGGACA+GGG | 0.563764 | 8_3:+46089476 | Msa1290900:CDS |
| GTGTTGCCACACGCTAATGC+TGG | 0.572272 | 8_3:-46090118 | None:intergenic |
| AAATTTGTAGATGCTGCTGC+TGG | 0.577592 | 8_3:+46089313 | Msa1290900:CDS |
| TTGATTGGTTCAAGGGACCT+TGG | 0.579537 | 8_3:+46092019 | Msa1290900:intron |
| CTACAGCACGTTTCAAAGCA+CGG | 0.582648 | 8_3:-46091156 | None:intergenic |
| TCCAAGCAAACATGAGAAGA+GGG | 0.585819 | 8_3:-46090087 | None:intergenic |
| AGGAGAAAGACTTGGTAGCA+AGG | 0.587482 | 8_3:+46091525 | Msa1290900:CDS |
| ATGTACAAATGTTCGAGACC+CGG | 0.588405 | 8_3:-46091095 | None:intergenic |
| AGTGATTGCTCATGTTGCTG+AGG | 0.588599 | 8_3:+46089501 | Msa1290900:CDS |
| TTTGGTGGATATAAGATGAG+TGG | 0.589571 | 8_3:+46092193 | Msa1290900:CDS |
| CTCTTTGAATCACCTCACCA+AGG | 0.589796 | 8_3:-46092036 | None:intergenic |
| TTCAAGTCAGGAACAGAACA+AGG | 0.593415 | 8_3:+46091187 | Msa1290900:CDS |
| GGATATAAGATGAGTGGACA+GGG | 0.593641 | 8_3:+46092199 | Msa1290900:CDS |
| AAGCATTTGATCAAGGGCCA+TGG | 0.596361 | 8_3:+46089566 | Msa1290900:CDS |
| CACCTTTGAAGAATCCAGCA+TGG | 0.596410 | 8_3:+46092278 | Msa1290900:CDS |
| GTTGGGCAGATAAGATTCAT+GGG | 0.597943 | 8_3:+46089978 | Msa1290900:CDS |
| TTCCAAGCAAACATGAGAAG+AGG | 0.599102 | 8_3:-46090088 | None:intergenic |
| GGAGAAAGACTTGGTAGCAA+GGG | 0.599344 | 8_3:+46091526 | Msa1290900:CDS |
| TAAGCTGGAAACTTAGGCCA+TGG | 0.601160 | 8_3:-46089583 | None:intergenic |
| CGTGCTTTGAAACGTGCTGT+AGG | 0.601175 | 8_3:+46091157 | Msa1290900:CDS |
| TTTCACACACACTATTCACA+AGG | 0.603941 | 8_3:-46088274 | None:intergenic |
| GGTGGGAATGGTTATCTGGG+TGG | 0.605677 | 8_3:+46089196 | Msa1290900:intron |
| ACCACGAGAAAACAAGGAGG+TGG | 0.610351 | 8_3:-46088381 | None:intergenic |
| AGCCATGCTGGATTCTTCAA+AGG | 0.612311 | 8_3:-46092280 | None:intergenic |
| TAATTTACCACGAGAAAACA+AGG | 0.622670 | 8_3:-46088387 | None:intergenic |
| TTGCTGGTCAGATCATTCCA+TGG | 0.623473 | 8_3:+46090059 | Msa1290900:CDS |
| GAAACTGGAGGAGAAAGACT+TGG | 0.623804 | 8_3:+46091517 | Msa1290900:CDS |
| CACACTCAGCTCCTAATCGA+TGG | 0.626153 | 8_3:+46089289 | Msa1290900:CDS |
| GCTACATACAAAGCAGACAA+TGG | 0.629627 | 8_3:-46090169 | None:intergenic |
| TGAACATTTGAGAAGACAGT+AGG | 0.631599 | 8_3:-46091562 | None:intergenic |
| ACATACCTGGTTAAAGAACA+AGG | 0.635925 | 8_3:-46090976 | None:intergenic |
| GTGATTGCTCATGTTGCTGA+GGG | 0.636914 | 8_3:+46089502 | Msa1290900:CDS |
| GGCGCTACACTTGAAACTGG+AGG | 0.646681 | 8_3:+46091505 | Msa1290900:CDS |
| TGGTTCAAGGGACCTTGGTG+AGG | 0.655055 | 8_3:+46092024 | Msa1290900:intron |
| GGAGTTTGTGGAGAAAGCAA+AGG | 0.675768 | 8_3:+46091132 | Msa1290900:CDS |
| TGTAGCAAAACTATTTCACG+AGG | 0.677900 | 8_3:+46090186 | Msa1290900:CDS |
| TGTACATGAACGTGTGCATG+AGG | 0.681956 | 8_3:+46091111 | Msa1290900:CDS |
| AACATTGGATCCAAGGACAG+GGG | 0.683175 | 8_3:+46089477 | Msa1290900:CDS |
| GTTGGACCAGCATTAGCGTG+TGG | 0.686548 | 8_3:+46090112 | Msa1290900:CDS |
| TTCACACACACTATTCACAA+GGG | 0.689461 | 8_3:-46088273 | None:intergenic |
| CATCGATTAGGAGCTGAGTG+TGG | 0.695634 | 8_3:-46089288 | None:intergenic |
| TTTACCACGAGAAAACAAGG+AGG | 0.806523 | 8_3:-46088384 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATAATAAAATTTATTTT+TGG | + | chr8_3:46092439-46092458 | Msa1290900:three_prime_UTR | 0.0% |
| !!! | TAATAATAAAATTTATTTTT+GGG | + | chr8_3:46092440-46092459 | Msa1290900:three_prime_UTR | 0.0% |
| !! | TATATAAATTAAAACAAGAT+TGG | - | chr8_3:46090225-46090244 | None:intergenic | 10.0% |
| !!! | AAGATAAAAGATATATTTTA+TGG | - | chr8_3:46090289-46090308 | None:intergenic | 10.0% |
| !!! | TTTTTAAGAAAATGATTTTC+TGG | + | chr8_3:46088519-46088538 | Msa1290900:intron | 15.0% |
| !!! | TTTTAAGAAAATGATTTTCT+GGG | + | chr8_3:46088520-46088539 | Msa1290900:intron | 15.0% |
| !!! | AGAAAAATAAGATAAGATTT+TGG | + | chr8_3:46088595-46088614 | Msa1290900:intron | 15.0% |
| !! | ATGATAAATTGAATATTGAA+AGG | + | chr8_3:46089154-46089173 | Msa1290900:intron | 15.0% |
| !!! | CTTTTTATACAATTTTGATT+AGG | + | chr8_3:46089363-46089382 | Msa1290900:intron | 15.0% |
| !!! | CAATTAATTTTAATGTTGAT+TGG | + | chr8_3:46092004-46092023 | Msa1290900:intron | 15.0% |
| !! | GTAATATAGATCAATAAATA+TGG | + | chr8_3:46092313-46092332 | Msa1290900:three_prime_UTR | 15.0% |
| !!! | TTTAAGAAAATGATTTTCTG+GGG | + | chr8_3:46088521-46088540 | Msa1290900:intron | 20.0% |
| !!! | TTTTGAATTTGATTGATGAT+GGG | + | chr8_3:46088547-46088566 | Msa1290900:intron | 20.0% |
| !!! | TTTTTCTTTCATTAATTGCA+TGG | + | chr8_3:46088661-46088680 | Msa1290900:intron | 20.0% |
| !! | TAATTTAAACATGCATTTCA+AGG | - | chr8_3:46088874-46088893 | None:intergenic | 20.0% |
| !! | GAAATGCATGTTTAAATTAA+CGG | + | chr8_3:46088875-46088894 | Msa1290900:intron | 20.0% |
| !!! | AGTTTTTAGCAAGAAATATT+CGG | - | chr8_3:46089015-46089034 | None:intergenic | 20.0% |
| !!! | TTCAGTTTATGATTTTCATT+AGG | + | chr8_3:46089096-46089115 | Msa1290900:intron | 20.0% |
| !!! | TCAGTTTATGATTTTCATTA+GGG | + | chr8_3:46089097-46089116 | Msa1290900:intron | 20.0% |
| !!! | TACAAAAACATTGTTTTTAG+TGG | + | chr8_3:46090251-46090270 | Msa1290900:intron | 20.0% |
| !! | TACAAGAAAGATTACAAATT+AGG | - | chr8_3:46090316-46090335 | None:intergenic | 20.0% |
| !!! | TAATTTGTAATCTTTCTTGT+AGG | + | chr8_3:46090315-46090334 | Msa1290900:intron | 20.0% |
| !! | AAAAAGAGTCATAAACATTA+AGG | - | chr8_3:46091379-46091398 | None:intergenic | 20.0% |
| !! | ATATTGAAGTATATTAGATC+TGG | + | chr8_3:46091472-46091491 | Msa1290900:CDS | 20.0% |
| !! | CAGATACAATTAAAAACATT+AGG | - | chr8_3:46091657-46091676 | None:intergenic | 20.0% |
| !!! | TCTCTAGAAAATTTTATAAG+AGG | + | chr8_3:46091928-46091947 | Msa1290900:intron | 20.0% |
| ! | ATGCTTATCTTCTATAAAGT+TGG | + | chr8_3:46088232-46088251 | Msa1290900:five_prime_UTR | 25.0% |
| ! | GCAAAACAAAAAATCTCTAA+TGG | + | chr8_3:46088301-46088320 | Msa1290900:exon | 25.0% |
| !!! | GTTTTGAATTTGATTGATGA+TGG | + | chr8_3:46088546-46088565 | Msa1290900:intron | 25.0% |
| ! | CATATTACTATAGCCAAAAA+AGG | - | chr8_3:46088793-46088812 | None:intergenic | 25.0% |
| ! | GGCTATAGTAATATGAAAAT+TGG | + | chr8_3:46088798-46088817 | Msa1290900:intron | 25.0% |
| ! | TTTGTACATGTTTAGATTGA+TGG | + | chr8_3:46088821-46088840 | Msa1290900:intron | 25.0% |
| !! | ATTTTTGTTAAGTCCATCTT+TGG | - | chr8_3:46088954-46088973 | None:intergenic | 25.0% |
| ! | GATGTTATCTTGATTTCAAT+TGG | + | chr8_3:46089057-46089076 | Msa1290900:intron | 25.0% |
| !! | TTTCAATTGGTGATTAAAAG+TGG | + | chr8_3:46089070-46089089 | Msa1290900:intron | 25.0% |
| !! | CAGTTTATGATTTTCATTAG+GGG | + | chr8_3:46089098-46089117 | Msa1290900:intron | 25.0% |
| ! | GGAAAAAAAAATGTACTTTC+AGG | + | chr8_3:46089175-46089194 | Msa1290900:intron | 25.0% |
| ! | AAAAAAAATGTACTTTCAGG+TGG | + | chr8_3:46089178-46089197 | Msa1290900:intron | 25.0% |
| !! | AAAAAAATGTACTTTCAGGT+GGG | + | chr8_3:46089179-46089198 | Msa1290900:intron | 25.0% |
| !!! | TTTAATCGGTTTTTCATCAA+TGG | - | chr8_3:46089251-46089270 | None:intergenic | 25.0% |
| !!! | TTTTGATTAGGAAAGAAAAG+AGG | + | chr8_3:46089375-46089394 | Msa1290900:intron | 25.0% |
| ! | AAGAAAAGAGGATTAACTAA+AGG | + | chr8_3:46089387-46089406 | Msa1290900:intron | 25.0% |
| ! | GATTAACTAAAGGAAAAGAA+GGG | + | chr8_3:46089397-46089416 | Msa1290900:intron | 25.0% |
| ! | GTTTGTCAAGTCATTATATT+TGG | + | chr8_3:46089652-46089671 | Msa1290900:intron | 25.0% |
| !!! | TTTCTGTTTCTGTGTTTTAT+AGG | + | chr8_3:46089714-46089733 | Msa1290900:intron | 25.0% |
| !! | TTGAATATAATATCTGGCTT+TGG | + | chr8_3:46090358-46090377 | Msa1290900:CDS | 25.0% |
| !! | ATGCTTTCAATCTAAAATGT+CGG | - | chr8_3:46090512-46090531 | None:intergenic | 25.0% |
| ! | ATCAATGATATCCGAATTAT+AGG | - | chr8_3:46091037-46091056 | None:intergenic | 25.0% |
| ! | ATAATTCGGATATCATTGAT+TGG | + | chr8_3:46091037-46091056 | Msa1290900:intron | 25.0% |
| ! | TATTCATTGTAATTTACCTG+AGG | - | chr8_3:46091214-46091233 | None:intergenic | 25.0% |
| ! | TTTGAATCAATCTGATTGTT+TGG | - | chr8_3:46091439-46091458 | None:intergenic | 25.0% |
| ! | TTATATTCTCATCTTTGCAA+AGG | + | chr8_3:46091614-46091633 | Msa1290900:intron | 25.0% |
| ! | ATTGCAAAAGAAGAGATATT+TGG | + | chr8_3:46091703-46091722 | Msa1290900:CDS | 25.0% |
| !! | AATTTCAATATGGTTTGTAC+TGG | - | chr8_3:46091730-46091749 | None:intergenic | 25.0% |
| ! | TTTGCAAAAATCGTCAAATT+GGG | - | chr8_3:46091878-46091897 | None:intergenic | 25.0% |
| !! | TTTTGCAAAAATCGTCAAAT+TGG | - | chr8_3:46091879-46091898 | None:intergenic | 25.0% |
| !!! | TATAAGAGGTGTATTTTACA+AGG | + | chr8_3:46091942-46091961 | Msa1290900:intron | 25.0% |
| ! | TTGCATTGCACATAAAAATA+GGG | - | chr8_3:46091987-46092006 | None:intergenic | 25.0% |
| ! | ATTGCATTGCACATAAAAAT+AGG | - | chr8_3:46091988-46092007 | None:intergenic | 25.0% |
| !!! | TTTTAATGTTGATTGGTTCA+AGG | + | chr8_3:46092011-46092030 | Msa1290900:intron | 25.0% |
| !! | TTTAATGTTGATTGGTTCAA+GGG | + | chr8_3:46092012-46092031 | Msa1290900:intron | 25.0% |
| !!! | ACATTTGATGTTTTTACCTT+TGG | + | chr8_3:46092386-46092405 | Msa1290900:three_prime_UTR | 25.0% |
| ! | ATTCAAGCATAAAAAACCAA+AGG | - | chr8_3:46092405-46092424 | None:intergenic | 25.0% |
| CTTCTTCAATCAAAATCTCA+AGG | + | chr8_3:46088324-46088343 | Msa1290900:CDS | 30.0% | |
| TAATTTACCACGAGAAAACA+AGG | - | chr8_3:46088390-46088409 | None:intergenic | 30.0% | |
| TCTTTCATTAATTGCATGGT+TGG | + | chr8_3:46088665-46088684 | Msa1290900:intron | 30.0% | |
| ! | GTTTAGATTGATGGTCTATT+TGG | + | chr8_3:46088830-46088849 | Msa1290900:intron | 30.0% |
| TTTAAACATGCATTTCAAGG+TGG | - | chr8_3:46088871-46088890 | None:intergenic | 30.0% | |
| ! | ATGATTTTCATTAGGGGTTT+AGG | + | chr8_3:46089104-46089123 | Msa1290900:intron | 30.0% |
| !!! | TAGGGGTTTAGGTTTTTTAA+AGG | + | chr8_3:46089115-46089134 | Msa1290900:intron | 30.0% |
| TGAAAAACCGATTAAACCAT+CGG | + | chr8_3:46089255-46089274 | Msa1290900:CDS | 30.0% | |
| GGATTAACTAAAGGAAAAGA+AGG | + | chr8_3:46089396-46089415 | Msa1290900:intron | 30.0% | |
| ! | TTTTGTGGTATCTTACCTTT+TGG | + | chr8_3:46089424-46089443 | Msa1290900:intron | 30.0% |
| AGGTAAAACATTTCCAACAT+TGG | + | chr8_3:46089462-46089481 | Msa1290900:intron | 30.0% | |
| CAGAAACAGAAAAACAAAAG+TGG | - | chr8_3:46089706-46089725 | None:intergenic | 30.0% | |
| ! | GTTTCTGTGTTTTATAGGAA+AGG | + | chr8_3:46089719-46089738 | Msa1290900:intron | 30.0% |
| ! | TGTATTTTCATATTTACCCC+AGG | + | chr8_3:46089956-46089975 | Msa1290900:intron | 30.0% |
| GGTGTGTTGAATATAATATC+TGG | + | chr8_3:46090352-46090371 | Msa1290900:CDS | 30.0% | |
| !! | TTTTAGATTGAAAGCATGTC+TGG | + | chr8_3:46090515-46090534 | Msa1290900:intron | 30.0% |
| TGTCAAACACTAACACATAT+CGG | - | chr8_3:46090544-46090563 | None:intergenic | 30.0% | |
| !!! | ACGTTTTGTTTGTACATTAG+TGG | + | chr8_3:46090748-46090767 | Msa1290900:intron | 30.0% |
| ! | CAAAAGATTTTCCAAGATTC+AGG | - | chr8_3:46090796-46090815 | None:intergenic | 30.0% |
| CAATTGTCTCTCCTATAATT+CGG | + | chr8_3:46091023-46091042 | Msa1290900:intron | 30.0% | |
| !! | TTTGTTTTCCTAATTCGCTA+CGG | + | chr8_3:46091268-46091287 | Msa1290900:intron | 30.0% |
| GTCTCACTTGAATTTCAATA+TGG | - | chr8_3:46091740-46091759 | None:intergenic | 30.0% | |
| TATAGACTACATTTGACGAA+GGG | - | chr8_3:46091831-46091850 | None:intergenic | 30.0% | |
| ATATAGACTACATTTGACGA+AGG | - | chr8_3:46091832-46091851 | None:intergenic | 30.0% | |
| AGAGCAAACAATTCAAAGTA+TGG | + | chr8_3:46092055-46092074 | Msa1290900:CDS | 30.0% | |
| ATTGAAAGTTGGAACAGTTT+GGG | + | chr8_3:46092135-46092154 | Msa1290900:CDS | 30.0% | |
| TAAAAACTACTTGCAAGTGA+AGG | + | chr8_3:46092246-46092265 | Msa1290900:CDS | 30.0% | |
| ! | ACAAGGGTACACAATGTTAT+TGG | - | chr8_3:46088260-46088279 | None:intergenic | 35.0% |
| TTCACACACACTATTCACAA+GGG | - | chr8_3:46088276-46088295 | None:intergenic | 35.0% | |
| TTTCACACACACTATTCACA+AGG | - | chr8_3:46088277-46088296 | None:intergenic | 35.0% | |
| ATCTGTGTGACATGAAAGAA+AGG | + | chr8_3:46088634-46088653 | Msa1290900:intron | 35.0% | |
| !!! | TAAGAGTGCTACTCCTTTTT+TGG | + | chr8_3:46088777-46088796 | Msa1290900:intron | 35.0% |
| ATTGACACTAGATCCAAAGA+TGG | + | chr8_3:46088938-46088957 | Msa1290900:intron | 35.0% | |
| ! | CTACAAATTTGCCATCGATT+AGG | - | chr8_3:46089303-46089322 | None:intergenic | 35.0% |
| !!! | GAAAAGAAGGGTTGTTTTTG+TGG | + | chr8_3:46089409-46089428 | Msa1290900:intron | 35.0% |
| CATACATAAGCTGGAAACTT+AGG | - | chr8_3:46089592-46089611 | None:intergenic | 35.0% | |
| AGCAATGATCATACATAAGC+TGG | - | chr8_3:46089601-46089620 | None:intergenic | 35.0% | |
| ATCTGAGCAGATTGTTCATA+TGG | - | chr8_3:46089829-46089848 | None:intergenic | 35.0% | |
| TCAGATTGAAATTCCAATGC+TGG | + | chr8_3:46089843-46089862 | Msa1290900:CDS | 35.0% | |
| TACCAGCATAGTAACGAATT+AGG | - | chr8_3:46089873-46089892 | None:intergenic | 35.0% | |
| ! | TTTTCATATTTACCCCAGGT+TGG | + | chr8_3:46089960-46089979 | Msa1290900:intron | 35.0% |
| TTTCATATTTACCCCAGGTT+GGG | + | chr8_3:46089961-46089980 | Msa1290900:intron | 35.0% | |
| TGTAGCAAAACTATTTCACG+AGG | + | chr8_3:46090186-46090205 | Msa1290900:CDS | 35.0% | |
| TTGTAATCTTTCTTGTAGGC+CGG | + | chr8_3:46090319-46090338 | Msa1290900:intron | 35.0% | |
| ATTATATTCAACACACCAGC+AGG | - | chr8_3:46090349-46090368 | None:intergenic | 35.0% | |
| TAGTCACATGGATGTTGATA+AGG | + | chr8_3:46090405-46090424 | Msa1290900:CDS | 35.0% | |
| CTATGTATCAAAGTTGTGTC+CGG | + | chr8_3:46090629-46090648 | Msa1290900:intron | 35.0% | |
| ! | AAGGACAACTTTTCCAGTAT+CGG | - | chr8_3:46090841-46090860 | None:intergenic | 35.0% |
| TGGAAAAGTTGTCCTTCAAT+TGG | + | chr8_3:46090845-46090864 | Msa1290900:CDS | 35.0% | |
| CAATCTTAAGCCAGTAACTT+TGG | + | chr8_3:46090878-46090897 | Msa1290900:CDS | 35.0% | |
| GCATCTTCGCAAACAATAAA+TGG | - | chr8_3:46090921-46090940 | None:intergenic | 35.0% | |
| ACATACCTGGTTAAAGAACA+AGG | - | chr8_3:46090979-46090998 | None:intergenic | 35.0% | |
| TTGTGATGTTCAGATACTAG+AGG | + | chr8_3:46091294-46091313 | Msa1290900:intron | 35.0% | |
| !! | ATTAGATCTGGCGTTGATAA+TGG | + | chr8_3:46091484-46091503 | Msa1290900:CDS | 35.0% |
| TGAACATTTGAGAAGACAGT+AGG | - | chr8_3:46091565-46091584 | None:intergenic | 35.0% | |
| TACTGTCTTCTCAAATGTTC+AGG | + | chr8_3:46091564-46091583 | Msa1290900:CDS | 35.0% | |
| TGTATCTGTAACAATCATCC+AGG | + | chr8_3:46091669-46091688 | Msa1290900:intron | 35.0% | |
| CTCTACAAATCAAGACTCAT+TGG | - | chr8_3:46091762-46091781 | None:intergenic | 35.0% | |
| !! | TTGACTAGAGCATTGAAAGT+TGG | + | chr8_3:46092124-46092143 | Msa1290900:CDS | 35.0% |
| CATTGAAAGTTGGAACAGTT+TGG | + | chr8_3:46092134-46092153 | Msa1290900:CDS | 35.0% | |
| ! | TTTGATGCTGCAATTCCTTT+TGG | + | chr8_3:46092175-46092194 | Msa1290900:CDS | 35.0% |
| CTCATCTTATATCCACCAAA+AGG | - | chr8_3:46092193-46092212 | None:intergenic | 35.0% | |
| ! | TTTGGTGGATATAAGATGAG+TGG | + | chr8_3:46092193-46092212 | Msa1290900:CDS | 35.0% |
| TTTACCACGAGAAAACAAGG+AGG | - | chr8_3:46088387-46088406 | None:intergenic | 40.0% | |
| !! | CATGGTTGGTACTACTTTTG+TGG | + | chr8_3:46088679-46088698 | Msa1290900:intron | 40.0% |
| TGGTCTATTTGGCAGAATCA+CGG | + | chr8_3:46088841-46088860 | Msa1290900:intron | 40.0% | |
| CGGTGTGATGAATGTAATCA+CGG | + | chr8_3:46088895-46088914 | Msa1290900:intron | 40.0% | |
| TGTGATGAATGTAATCACGG+TGG | + | chr8_3:46088898-46088917 | Msa1290900:intron | 40.0% | |
| AAACTCATGTCTGTGTCAGT+TGG | + | chr8_3:46089030-46089049 | Msa1290900:intron | 40.0% | |
| ! | AATGTACTTTCAGGTGGGAA+TGG | + | chr8_3:46089184-46089203 | Msa1290900:intron | 40.0% |
| ! | ACTTGCACCGATGGTTTAAT+CGG | - | chr8_3:46089265-46089284 | None:intergenic | 40.0% |
| AAATTTGTAGATGCTGCTGC+TGG | + | chr8_3:46089313-46089332 | Msa1290900:CDS | 40.0% | |
| GATCACAGACAAACTCCAAA+AGG | - | chr8_3:46089442-46089461 | None:intergenic | 40.0% | |
| ! | TTTGGAGTTTGTCTGTGATC+AGG | + | chr8_3:46089442-46089461 | Msa1290900:intron | 40.0% |
| CATTTCCAACATTGGATCCA+AGG | + | chr8_3:46089470-46089489 | Msa1290900:CDS | 40.0% | |
| ! | CACGCAAAGCATTTGATCAA+GGG | + | chr8_3:46089560-46089579 | Msa1290900:CDS | 40.0% |
| AAATTGCAGCACTTGAGACT+TGG | + | chr8_3:46089791-46089810 | Msa1290900:CDS | 40.0% | |
| AATTGCAGCACTTGAGACTT+GGG | + | chr8_3:46089792-46089811 | Msa1290900:CDS | 40.0% | |
| CACTTGAGACTTGGGATAAT+GGG | + | chr8_3:46089800-46089819 | Msa1290900:CDS | 40.0% | |
| GTTGGGCAGATAAGATTCAT+GGG | + | chr8_3:46089978-46089997 | Msa1290900:CDS | 40.0% | |
| TGCAATGTCTGCACATGATA+TGG | - | chr8_3:46090025-46090044 | None:intergenic | 40.0% | |
| TCCAAGCAAACATGAGAAGA+GGG | - | chr8_3:46090090-46090109 | None:intergenic | 40.0% | |
| TTCCAAGCAAACATGAGAAG+AGG | - | chr8_3:46090091-46090110 | None:intergenic | 40.0% | |
| TCTTCTCATGTTTGCTTGGA+AGG | + | chr8_3:46090090-46090109 | Msa1290900:CDS | 40.0% | |
| GCTACATACAAAGCAGACAA+TGG | - | chr8_3:46090172-46090191 | None:intergenic | 40.0% | |
| ! | CAATCTAAAATGTCGGTGCA+TGG | - | chr8_3:46090505-46090524 | None:intergenic | 40.0% |
| TGAAACACTAACACAGACAC+CGG | - | chr8_3:46090651-46090670 | None:intergenic | 40.0% | |
| ! | TCGATCTTTGTTTCGTGTAG+AGG | + | chr8_3:46090708-46090727 | Msa1290900:intron | 40.0% |
| ! | TCTAGAACAAGCCTGAATCT+TGG | + | chr8_3:46090782-46090801 | Msa1290900:intron | 40.0% |
| ! | CTTTTGCAGCTTGCATTTAC+TGG | + | chr8_3:46090810-46090829 | Msa1290900:intron | 40.0% |
| !! | TTTACTGGTTCAACCGATAC+TGG | + | chr8_3:46090825-46090844 | Msa1290900:CDS | 40.0% |
| !! | TGCTTTTAGCTGCCAATTGA+AGG | - | chr8_3:46090860-46090879 | None:intergenic | 40.0% |
| ! | CTTTGCCTTGTTCTTTAACC+AGG | + | chr8_3:46090971-46090990 | Msa1290900:CDS | 40.0% |
| GAACTCTGATTGTACATACC+TGG | - | chr8_3:46090992-46091011 | None:intergenic | 40.0% | |
| ATGTACAAATGTTCGAGACC+CGG | - | chr8_3:46091098-46091117 | None:intergenic | 40.0% | |
| ! | TGTTCTGTTCCTGACTTGAA+TGG | - | chr8_3:46091187-46091206 | None:intergenic | 40.0% |
| TTCAAGTCAGGAACAGAACA+AGG | + | chr8_3:46091187-46091206 | Msa1290900:CDS | 40.0% | |
| TCTGTAACAATCATCCAGGA+TGG | + | chr8_3:46091673-46091692 | Msa1290900:intron | 40.0% | |
| ! | TTGACGAAGGGTGCATTAAA+GGG | - | chr8_3:46091819-46091838 | None:intergenic | 40.0% |
| ! | TTTGACGAAGGGTGCATTAA+AGG | - | chr8_3:46091820-46091839 | None:intergenic | 40.0% |
| TGGATATAAGATGAGTGGAC+AGG | + | chr8_3:46092198-46092217 | Msa1290900:CDS | 40.0% | |
| GGATATAAGATGAGTGGACA+GGG | + | chr8_3:46092199-46092218 | Msa1290900:CDS | 40.0% | |
| TTCAGGTGGGAATGGTTATC+TGG | + | chr8_3:46089192-46089211 | Msa1290900:intron | 45.0% | |
| TCAGGTGGGAATGGTTATCT+GGG | + | chr8_3:46089193-46089212 | Msa1290900:intron | 45.0% | |
| CAACATTGGATCCAAGGACA+GGG | + | chr8_3:46089476-46089495 | Msa1290900:CDS | 45.0% | |
| AACATTGGATCCAAGGACAG+GGG | + | chr8_3:46089477-46089496 | Msa1290900:CDS | 45.0% | |
| AGTGATTGCTCATGTTGCTG+AGG | + | chr8_3:46089501-46089520 | Msa1290900:CDS | 45.0% | |
| GTGATTGCTCATGTTGCTGA+GGG | + | chr8_3:46089502-46089521 | Msa1290900:CDS | 45.0% | |
| ! | GCACGCAAAGCATTTGATCA+AGG | + | chr8_3:46089559-46089578 | Msa1290900:CDS | 45.0% |
| AAGCATTTGATCAAGGGCCA+TGG | + | chr8_3:46089566-46089585 | Msa1290900:CDS | 45.0% | |
| TAAGCTGGAAACTTAGGCCA+TGG | - | chr8_3:46089586-46089605 | None:intergenic | 45.0% | |
| GCACTTGAGACTTGGGATAA+TGG | + | chr8_3:46089799-46089818 | Msa1290900:CDS | 45.0% | |
| CGCCTAATTCGTTACTATGC+TGG | + | chr8_3:46089868-46089887 | Msa1290900:CDS | 45.0% | |
| AATCTTATCTGCCCAACCTG+GGG | - | chr8_3:46089975-46089994 | None:intergenic | 45.0% | |
| GAATCTTATCTGCCCAACCT+GGG | - | chr8_3:46089976-46089995 | None:intergenic | 45.0% | |
| TGAATCTTATCTGCCCAACC+TGG | - | chr8_3:46089977-46089996 | None:intergenic | 45.0% | |
| GGTTGGGCAGATAAGATTCA+TGG | + | chr8_3:46089977-46089996 | Msa1290900:intron | 45.0% | |
| ACATGATATGGTCCATCAGC+TGG | - | chr8_3:46090013-46090032 | None:intergenic | 45.0% | |
| CAGACATTGCACGAACCAAT+TGG | + | chr8_3:46090034-46090053 | Msa1290900:CDS | 45.0% | |
| TTGCTGGTCAGATCATTCCA+TGG | + | chr8_3:46090059-46090078 | Msa1290900:CDS | 45.0% | |
| ATGAGAAGAGGGAAGTTCCA+TGG | - | chr8_3:46090079-46090098 | None:intergenic | 45.0% | |
| TCCCTCTTCTCATGTTTGCT+TGG | + | chr8_3:46090086-46090105 | Msa1290900:CDS | 45.0% | |
| CTCATGTTTGCTTGGAAGGT+TGG | + | chr8_3:46090094-46090113 | Msa1290900:CDS | 45.0% | |
| !! | AAGCCAGTAACTTTGGAGCT+TGG | + | chr8_3:46090885-46090904 | Msa1290900:CDS | 45.0% |
| !! | CAGTAACTTTGGAGCTTGGT+GGG | + | chr8_3:46090889-46090908 | Msa1290900:CDS | 45.0% |
| TGGCGTTCTTTCTGACATTC+AGG | + | chr8_3:46091057-46091076 | Msa1290900:intron | 45.0% | |
| GGCGTTCTTTCTGACATTCA+GGG | + | chr8_3:46091058-46091077 | Msa1290900:intron | 45.0% | |
| TGTACATGAACGTGTGCATG+AGG | + | chr8_3:46091111-46091130 | Msa1290900:CDS | 45.0% | |
| GGAGTTTGTGGAGAAAGCAA+AGG | + | chr8_3:46091132-46091151 | Msa1290900:CDS | 45.0% | |
| TACAGCACGTTTCAAAGCAC+GGG | - | chr8_3:46091158-46091177 | None:intergenic | 45.0% | |
| CTACAGCACGTTTCAAAGCA+CGG | - | chr8_3:46091159-46091178 | None:intergenic | 45.0% | |
| GTAGGAGATCCATTCAAGTC+AGG | + | chr8_3:46091175-46091194 | Msa1290900:CDS | 45.0% | |
| CACAATGACCGTAGCGAATT+AGG | - | chr8_3:46091279-46091298 | None:intergenic | 45.0% | |
| AATGGCGCTACACTTGAAAC+TGG | + | chr8_3:46091502-46091521 | Msa1290900:CDS | 45.0% | |
| GAAACTGGAGGAGAAAGACT+TGG | + | chr8_3:46091517-46091536 | Msa1290900:CDS | 45.0% | |
| ! | AGGAGAAAGACTTGGTAGCA+AGG | + | chr8_3:46091525-46091544 | Msa1290900:CDS | 45.0% |
| ! | GGAGAAAGACTTGGTAGCAA+GGG | + | chr8_3:46091526-46091545 | Msa1290900:CDS | 45.0% |
| GAGATGCTCAGTTCTCAATC+TGG | - | chr8_3:46091912-46091931 | None:intergenic | 45.0% | |
| ! | TTGATTGGTTCAAGGGACCT+TGG | + | chr8_3:46092019-46092038 | Msa1290900:intron | 45.0% |
| CTCTTTGAATCACCTCACCA+AGG | - | chr8_3:46092039-46092058 | None:intergenic | 45.0% | |
| ! | TCAAAGTATGGTCTTGCAGC+AGG | + | chr8_3:46092067-46092086 | Msa1290900:CDS | 45.0% |
| ! | GATGCTGCAATTCCTTTTGG+TGG | + | chr8_3:46092178-46092197 | Msa1290900:CDS | 45.0% |
| ! | CACCTTTGAAGAATCCAGCA+TGG | + | chr8_3:46092278-46092297 | Msa1290900:CDS | 45.0% |
| AGCCATGCTGGATTCTTCAA+AGG | - | chr8_3:46092283-46092302 | None:intergenic | 45.0% | |
| !!! | AAATTTTATTATTAATATAC+TGG | - | chr8_3:46092434-46092453 | None:intergenic | 5.0% |
| !!! | TCCACCTCCTTGTTTTCTCG+TGG | + | chr8_3:46088380-46088399 | Msa1290900:CDS | 50.0% |
| ACCACGAGAAAACAAGGAGG+TGG | - | chr8_3:46088384-46088403 | None:intergenic | 50.0% | |
| ! | CATCGATTAGGAGCTGAGTG+TGG | - | chr8_3:46089291-46089310 | None:intergenic | 50.0% |
| CACACTCAGCTCCTAATCGA+TGG | + | chr8_3:46089289-46089308 | Msa1290900:CDS | 50.0% | |
| CCTGTCCTTGGATCCAATGT+TGG | - | chr8_3:46089478-46089497 | None:intergenic | 50.0% | |
| CCAACATTGGATCCAAGGAC+AGG | + | chr8_3:46089475-46089494 | Msa1290900:CDS | 50.0% | |
| CGAATTAGGCGAACCAGCAT+TGG | - | chr8_3:46089859-46089878 | None:intergenic | 50.0% | |
| CGTTACTATGCTGGTACGTG+CGG | + | chr8_3:46089877-46089896 | Msa1290900:intron | 50.0% | |
| ATCTGACCAGCAACGCCAAT+TGG | - | chr8_3:46090052-46090071 | None:intergenic | 50.0% | |
| AGCAGACAATGGCGTCTGTT+CGG | - | chr8_3:46090161-46090180 | None:intergenic | 50.0% | |
| TGCTGCTCTTGCTAGTCACA+TGG | + | chr8_3:46090393-46090412 | Msa1290900:CDS | 50.0% | |
| CCACCAAGCTCCAAAGTTAC+TGG | - | chr8_3:46090891-46090910 | None:intergenic | 50.0% | |
| !! | CCAGTAACTTTGGAGCTTGG+TGG | + | chr8_3:46090888-46090907 | Msa1290900:CDS | 50.0% |
| ACGTGTGCATGAGGAGTTTG+TGG | + | chr8_3:46091120-46091139 | Msa1290900:CDS | 50.0% | |
| !! | CGTGCTTTGAAACGTGCTGT+AGG | + | chr8_3:46091157-46091176 | Msa1290900:CDS | 50.0% |
| AGGAACAGAACAAGGTCCTC+AGG | + | chr8_3:46091195-46091214 | Msa1290900:CDS | 50.0% | |
| TTGCAATCTGCATGCCATCC+TGG | - | chr8_3:46091690-46091709 | None:intergenic | 50.0% | |
| AGTGGACAGGGCAGAGAAAA+AGG | + | chr8_3:46092211-46092230 | Msa1290900:CDS | 50.0% | |
| ACAGATGCTCAAAGCCATGC+TGG | - | chr8_3:46092295-46092314 | None:intergenic | 50.0% | |
| GGTGGGAATGGTTATCTGGG+TGG | + | chr8_3:46089196-46089215 | Msa1290900:intron | 55.0% | |
| GCAATCACTTCCCCTGTCCT+TGG | - | chr8_3:46089490-46089509 | None:intergenic | 55.0% | |
| TGCTTTGCGTGCAGCTGCAA+CGG | - | chr8_3:46089551-46089570 | None:intergenic | 55.0% | |
| CACGAACCAATTGGCGTTGC+TGG | + | chr8_3:46090043-46090062 | Msa1290900:CDS | 55.0% | |
| GTTGGACCAGCATTAGCGTG+TGG | + | chr8_3:46090112-46090131 | Msa1290900:CDS | 55.0% | |
| GTGTTGCCACACGCTAATGC+TGG | - | chr8_3:46090121-46090140 | None:intergenic | 55.0% | |
| CAACACACCAGCAGGAAGTC+CGG | - | chr8_3:46090341-46090360 | None:intergenic | 55.0% | |
| !! | TCTGGCTTTGGTCCAACTGC+AGG | + | chr8_3:46090370-46090389 | Msa1290900:CDS | 55.0% |
| CAGGGACAATGTTGCTGTGC+CGG | + | chr8_3:46091076-46091095 | Msa1290900:intron | 55.0% | |
| AGGGACAATGTTGCTGTGCC+GGG | + | chr8_3:46091077-46091096 | Msa1290900:intron | 55.0% | |
| GGCGCTACACTTGAAACTGG+AGG | + | chr8_3:46091505-46091524 | Msa1290900:CDS | 55.0% | |
| TGGTTCAAGGGACCTTGGTG+AGG | + | chr8_3:46092024-46092043 | Msa1290900:intron | 55.0% | |
| !! | GTGTGGTCGACTTGCACCGA+TGG | - | chr8_3:46089274-46089293 | None:intergenic | 60.0% |
| CTATGCTGGTACGTGCGGTG+TGG | + | chr8_3:46089882-46089901 | Msa1290900:intron | 60.0% | |
| GGGCTCACAGTTCCAGCTGA+TGG | + | chr8_3:46089998-46090017 | Msa1290900:CDS | 60.0% | |
| TTGTAGGCCGGACTTCCTGC+TGG | + | chr8_3:46090331-46090350 | Msa1290900:intron | 60.0% | |
| GCAAGAGCAGCACCTGCAGT+TGG | - | chr8_3:46090385-46090404 | None:intergenic | 60.0% | |
| GCTGGTACGTGCGGTGTGGA+AGG | + | chr8_3:46089886-46089905 | Msa1290900:intron | 65.0% | |
| GGTACGTGCGGTGTGGAAGG+TGG | + | chr8_3:46089889-46089908 | Msa1290900:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 46088200 | 46092493 | 46088200 | ID=Msa1290900;Name=Msa1290900 |
| chr8_3 | mRNA | 46088200 | 46092493 | 46088200 | ID=Msa1290900-mRNA-1;Parent=Msa1290900;Name=Msa1290900-mRNA-1;_AED=0.15;_eAED=0.15;_QI=120|1|1|1|1|1|11|187|540 |
| chr8_3 | exon | 46088200 | 46088401 | 46088200 | ID=Msa1290900-mRNA-1:exon:12703;Parent=Msa1290900-mRNA-1 |
| chr8_3 | exon | 46089197 | 46089334 | 46089197 | ID=Msa1290900-mRNA-1:exon:12704;Parent=Msa1290900-mRNA-1 |
| chr8_3 | exon | 46089464 | 46089606 | 46089464 | ID=Msa1290900-mRNA-1:exon:12705;Parent=Msa1290900-mRNA-1 |
| chr8_3 | exon | 46089736 | 46089889 | 46089736 | ID=Msa1290900-mRNA-1:exon:12706;Parent=Msa1290900-mRNA-1 |
| chr8_3 | exon | 46089978 | 46090207 | 46089978 | ID=Msa1290900-mRNA-1:exon:12707;Parent=Msa1290900-mRNA-1 |
| chr8_3 | exon | 46090337 | 46090426 | 46090337 | ID=Msa1290900-mRNA-1:exon:12708;Parent=Msa1290900-mRNA-1 |
| chr8_3 | exon | 46090819 | 46090992 | 46090819 | ID=Msa1290900-mRNA-1:exon:12709;Parent=Msa1290900-mRNA-1 |
| chr8_3 | exon | 46091079 | 46091216 | 46091079 | ID=Msa1290900-mRNA-1:exon:12710;Parent=Msa1290900-mRNA-1 |
| chr8_3 | exon | 46091448 | 46091585 | 46091448 | ID=Msa1290900-mRNA-1:exon:12711;Parent=Msa1290900-mRNA-1 |
| chr8_3 | exon | 46091691 | 46091752 | 46091691 | ID=Msa1290900-mRNA-1:exon:12712;Parent=Msa1290900-mRNA-1 |
| chr8_3 | exon | 46092033 | 46092493 | 46092033 | ID=Msa1290900-mRNA-1:exon:12713;Parent=Msa1290900-mRNA-1 |
| chr8_3 | five_prime_UTR | 46088200 | 46088319 | 46088200 | ID=Msa1290900-mRNA-1:five_prime_utr;Parent=Msa1290900-mRNA-1 |
| chr8_3 | CDS | 46088320 | 46088401 | 46088320 | ID=Msa1290900-mRNA-1:cds;Parent=Msa1290900-mRNA-1 |
| chr8_3 | CDS | 46089197 | 46089334 | 46089197 | ID=Msa1290900-mRNA-1:cds;Parent=Msa1290900-mRNA-1 |
| chr8_3 | CDS | 46089464 | 46089606 | 46089464 | ID=Msa1290900-mRNA-1:cds;Parent=Msa1290900-mRNA-1 |
| chr8_3 | CDS | 46089736 | 46089889 | 46089736 | ID=Msa1290900-mRNA-1:cds;Parent=Msa1290900-mRNA-1 |
| chr8_3 | CDS | 46089978 | 46090207 | 46089978 | ID=Msa1290900-mRNA-1:cds;Parent=Msa1290900-mRNA-1 |
| chr8_3 | CDS | 46090337 | 46090426 | 46090337 | ID=Msa1290900-mRNA-1:cds;Parent=Msa1290900-mRNA-1 |
| chr8_3 | CDS | 46090819 | 46090992 | 46090819 | ID=Msa1290900-mRNA-1:cds;Parent=Msa1290900-mRNA-1 |
| chr8_3 | CDS | 46091079 | 46091216 | 46091079 | ID=Msa1290900-mRNA-1:cds;Parent=Msa1290900-mRNA-1 |
| chr8_3 | CDS | 46091448 | 46091585 | 46091448 | ID=Msa1290900-mRNA-1:cds;Parent=Msa1290900-mRNA-1 |
| chr8_3 | CDS | 46091691 | 46091752 | 46091691 | ID=Msa1290900-mRNA-1:cds;Parent=Msa1290900-mRNA-1 |
| chr8_3 | CDS | 46092033 | 46092306 | 46092033 | ID=Msa1290900-mRNA-1:cds;Parent=Msa1290900-mRNA-1 |
| chr8_3 | three_prime_UTR | 46092307 | 46092493 | 46092307 | ID=Msa1290900-mRNA-1:three_prime_utr;Parent=Msa1290900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
