AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1449350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1449350 MtrunA17_Chr3g0135621 96.865 606 18 1 1 606 1 605 0.0 1120
Msa1449350 MtrunA17_Chr3g0135631 96.287 404 14 1 203 606 1 403 0.0 712
Msa1449350 MtrunA17_Chr1g0151761 62.969 640 142 18 1 588 1 597 0.0 593
Msa1449350 MtrunA17_Chr3g0135641 98.942 189 2 0 1 189 1 189 2.87e-131 382
Msa1449350 MtrunA17_Chr3g0135641 46.377 69 34 2 182 249 90 156 9.42e-13 67.4
Msa1449350 MtrunA17_Chr5g0396111 56.069 173 72 1 82 250 181 353 8.82e-58 198
Msa1449350 MtrunA17_Chr7g0217251 27.675 542 256 27 68 561 141 594 1.92e-12 70.1
Msa1449350 MtrunA17_Chr1g0197441 29.187 209 117 6 89 283 39 230 1.44e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1449350 AT2G25970.1 53.177 598 181 27 26 587 66 600 8.01e-129 392
Msa1449350 AT1G33680.1 35.979 567 247 28 86 600 232 734 6.95e-54 196
Msa1449350 AT4G10070.1 43.972 282 127 10 82 349 172 436 1.93e-53 194
Msa1449350 AT5G04430.2 30.769 208 124 7 89 289 38 232 5.60e-14 73.9
Msa1449350 AT5G04430.1 31.548 168 102 4 89 253 38 195 2.78e-12 68.6

Find 260 sgRNAs with CRISPR-Local

Find 385 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATGAAAACAAACTTATTT+TGG 0.160449 tig0032533:+25852 Msa1449350:three_prime_UTR
TCCATGTCATTTGCAGAATT+TGG 0.165836 tig0032533:+26039 Msa1449350:three_prime_UTR
CTTTAGGTTGGCCTTATAAT+TGG 0.202642 tig0032533:+23348 Msa1449350:intron
TTCTCTTGTGATGGTTATTA+TGG 0.204549 tig0032533:+25758 Msa1449350:three_prime_UTR
GGAACTTCGCCGCTCATTTC+AGG 0.205981 tig0032533:-26019 None:intergenic
GGTAGGGTTGGTGTTCTTAT+TGG 0.218158 tig0032533:+22058 Msa1449350:CDS
CAGTAGTGGGTTGGGAAGTT+TGG 0.232400 tig0032533:-25259 None:intergenic
GACTAGGATGGTTGAACTTA+TGG 0.236098 tig0032533:+22171 Msa1449350:CDS
CAGAATCGTCTCAGAAATTC+AGG 0.249484 tig0032533:+24687 Msa1449350:intron
AGTAGTGGGTTGGGAAGTTT+GGG 0.253746 tig0032533:-25258 None:intergenic
TATCGATGTTGCTATCAAAA+TGG 0.259984 tig0032533:-25813 None:intergenic
AGTGCAAATCCACCTGTTTA+TGG 0.260187 tig0032533:+25425 Msa1449350:CDS
CTCCTCCTTTACCAATTATA+AGG 0.261517 tig0032533:-23359 None:intergenic
TAGGCTGAAGCTGGGGCTTC+TGG 0.266896 tig0032533:+23164 Msa1449350:intron
AGTTGGAAGCGTGCCCTTCT+TGG 0.286199 tig0032533:-25214 None:intergenic
GGTTGGTAGCATAGCCTTGC+TGG 0.287848 tig0032533:-25286 None:intergenic
TTCACTTTCTTCCTCTCTAT+AGG 0.289785 tig0032533:+21743 Msa1449350:five_prime_UTR
ATTACTCCCACTGCCATAAC+TGG 0.291727 tig0032533:-25186 None:intergenic
CTCTATAGGGTTTGTTTCAA+TGG 0.295151 tig0032533:+21757 Msa1449350:exon
TTCTACCGGAGCACGAATTC+AGG 0.305971 tig0032533:+23404 Msa1449350:CDS
AGACGGATGGTTGCACAATC+TGG 0.309169 tig0032533:+23197 Msa1449350:CDS
ACCATCCTAGTCTGAGAATT+AGG 0.309685 tig0032533:-22160 None:intergenic
CATCCCCACACCTTATTGTT+TGG 0.311267 tig0032533:-23245 None:intergenic
CTTTCTGTTGATGTATCACC+TGG 0.313635 tig0032533:-23612 None:intergenic
TCACTTTCTTCCTCTCTATA+GGG 0.320093 tig0032533:+21744 Msa1449350:five_prime_UTR
GAAGGGCACGCTTCCAACTA+TGG 0.327467 tig0032533:+25218 Msa1449350:CDS
TGATGGTTATTATGGTCCTT+CGG 0.350858 tig0032533:+25766 Msa1449350:three_prime_UTR
GTGTGGGAAGGAATTGGATT+AGG 0.357179 tig0032533:-21714 None:intergenic
TTTGCTGTTGCTGGGGTTGT+TGG 0.358645 tig0032533:-24974 None:intergenic
TCATATGGAAATAGTTCTTA+TGG 0.360383 tig0032533:+25635 Msa1449350:CDS
GTTATCGGACTTGGTTCGTT+TGG 0.360575 tig0032533:-21936 None:intergenic
AACTTCTTGAGCTCGTTGTT+TGG 0.361408 tig0032533:-21864 None:intergenic
GAAGCTGGGGCTTCTGGCGG+TGG 0.361827 tig0032533:+23170 Msa1449350:CDS
TTTGCTGATTCAATTTGATC+AGG 0.363459 tig0032533:-23657 None:intergenic
GATTCAAGTTACTCGTGATA+TGG 0.369842 tig0032533:+22129 Msa1449350:CDS
CCATAGGCCGCTTGGGAGGT+AGG 0.372582 tig0032533:-25344 None:intergenic
TTTATTAACTAGGCTGAAGC+TGG 0.373039 tig0032533:+23155 Msa1449350:intron
TTATGGTGCTGGTTATGTTC+AGG 0.375380 tig0032533:+25652 Msa1449350:CDS
GATGCAAATACCAAACAATA+AGG 0.377129 tig0032533:+23235 Msa1449350:CDS
TTATCGGACTTGGTTCGTTT+GGG 0.378392 tig0032533:-21935 None:intergenic
GAGTTCGATGTCCGTGGCGG+TGG 0.387307 tig0032533:-21828 None:intergenic
CCGGTGGATATTCCACCAAC+TGG 0.387764 tig0032533:+24889 Msa1449350:CDS
AATGCGCAACAACAACAATC+TGG 0.391525 tig0032533:+25113 Msa1449350:CDS
TGTTGCTGATCATATGTTTG+TGG 0.391746 tig0032533:-25146 None:intergenic
GCTGAGCATACCCGGAAGGC+GGG 0.392161 tig0032533:-25511 None:intergenic
GGTCCTTCACAGCCAGCTGA+TGG 0.395783 tig0032533:+25005 Msa1449350:CDS
GGCCAGACTCCGCCGTCATA+TGG 0.396618 tig0032533:+25620 Msa1449350:CDS
TTAGCTCCTATTCAACCTTC+CGG 0.397554 tig0032533:-25889 None:intergenic
GTTGGTGTTCTTATTGGTAA+AGG 0.399271 tig0032533:+22064 Msa1449350:CDS
TGGAGCACCGTTATCGGACT+TGG 0.399369 tig0032533:-21945 None:intergenic
CCTACCTCCCAAGCGGCCTA+TGG 0.399491 tig0032533:+25344 Msa1449350:CDS
CCCCAGCAACAGCAAAATCC+TGG 0.404109 tig0032533:+24981 Msa1449350:CDS
TTCCATATGACGGCGGAGTC+TGG 0.406065 tig0032533:-25622 None:intergenic
AGTCAACCACAGTCTGGTTA+TGG 0.407882 tig0032533:+25368 Msa1449350:CDS
GTTGGAAGCGTGCCCTTCTT+GGG 0.411122 tig0032533:-25213 None:intergenic
TATGATCAGCAACAAGGTTA+TGG 0.411167 tig0032533:+25155 Msa1449350:CDS
CAAGGTGGCCAGCCTGGCTA+TGG 0.413475 tig0032533:+25599 Msa1449350:CDS
AATCCCGACCACCGTCTAGC+TGG 0.415564 tig0032533:+24742 Msa1449350:CDS
CATAGGCCGCTTGGGAGGTA+GGG 0.417451 tig0032533:-25343 None:intergenic
ACTAGGATGGTTGAACTTAT+GGG 0.418819 tig0032533:+22172 Msa1449350:CDS
AACTGCACAGGCTGTTCCAC+AGG 0.420141 tig0032533:+25700 Msa1449350:CDS
AACACGGTGTGGGAAGGAAT+TGG 0.425308 tig0032533:-21720 None:intergenic
TATGGCTCTGCTCCCAGTTA+TGG 0.425707 tig0032533:+25173 Msa1449350:CDS
TTACATTTATCTAAGCTGTA+TGG 0.426408 tig0032533:+25957 Msa1449350:three_prime_UTR
GATGGTTATTATGGTCCTTC+GGG 0.428194 tig0032533:+25767 Msa1449350:three_prime_UTR
AGCCAACCAGGACAGGGTTA+TGG 0.429254 tig0032533:+25068 Msa1449350:CDS
CTGGTTGAGGAGTTCCTTGT+TGG 0.431801 tig0032533:-25307 None:intergenic
GAAGCGTGCCCTTCTTGGGT+TGG 0.433826 tig0032533:-25209 None:intergenic
TGGTTATAGCCAACCAGGAC+AGG 0.437107 tig0032533:+25061 Msa1449350:CDS
TAGTGGGTTGGGAAGTTTGG+GGG 0.438776 tig0032533:-25256 None:intergenic
ATTGTGGAATATATGTTAAA+AGG 0.439419 tig0032533:+26066 Msa1449350:three_prime_UTR
CTGGGCAACAGTAGTGGGTT+GGG 0.439592 tig0032533:-25267 None:intergenic
GCTTGTTGCACAGGAGCAGC+AGG 0.441689 tig0032533:-24771 None:intergenic
TATTATGGTCCTTCGGGATG+TGG 0.441964 tig0032533:+25773 Msa1449350:three_prime_UTR
GCTCCTCAAGGTGGCCAGCC+TGG 0.443253 tig0032533:+25593 Msa1449350:CDS
TCTTGACCATAACCCTGTCC+TGG 0.444195 tig0032533:-25074 None:intergenic
CGATTGTGGAGCACCGTTAT+CGG 0.444219 tig0032533:-21951 None:intergenic
GACGGATGGTTGCACAATCT+GGG 0.446354 tig0032533:+23198 Msa1449350:CDS
CGATAACGGTGCTCCACAAT+CGG 0.446619 tig0032533:+21952 Msa1449350:CDS
ATCGATGTTGCTATCAAAAT+GGG 0.453806 tig0032533:-25812 None:intergenic
GTTGACTTCCATAGGCCGCT+TGG 0.454305 tig0032533:-25352 None:intergenic
AGCCCAGCTAGACGGTGGTC+GGG 0.454864 tig0032533:-24745 None:intergenic
AGTGGGTTGGGAAGTTTGGG+GGG 0.456628 tig0032533:-25255 None:intergenic
GTCCTTCACAGCCAGCTGAT+GGG 0.456888 tig0032533:+25006 Msa1449350:CDS
TGAGCATACCCGGAAGGCGG+GGG 0.460955 tig0032533:-25509 None:intergenic
TTGACTTCCATAGGCCGCTT+GGG 0.461597 tig0032533:-25351 None:intergenic
AGCTAGACGGTGGTCGGGAT+TGG 0.461750 tig0032533:-24740 None:intergenic
AATTGAATCAGCAAAGCAAT+TGG 0.464801 tig0032533:+23665 Msa1449350:CDS
AAGTATCTTCAGATGCAATC+TGG 0.464861 tig0032533:+22100 Msa1449350:CDS
CCTGTGCAACAAGCTGGTTA+TGG 0.465420 tig0032533:+24780 Msa1449350:CDS
AGAACACCAACCCTACCATT+AGG 0.466222 tig0032533:-22052 None:intergenic
TACAGTCAACCTCCTTCCTC+TGG 0.467231 tig0032533:+25041 Msa1449350:CDS
GATAACGGTGCTCCACAATC+GGG 0.467332 tig0032533:+21953 Msa1449350:CDS
GGAAATAGTTCTTATGGTGC+TGG 0.472518 tig0032533:+25641 Msa1449350:CDS
TTGCTGATTCAATTTGATCA+GGG 0.472599 tig0032533:-23656 None:intergenic
TCGCAGCAAGGTGGTAGTTA+TGG 0.474269 tig0032533:+22007 Msa1449350:CDS
AAGAAGATTGAAATACCTAA+TGG 0.476293 tig0032533:+22037 Msa1449350:CDS
GTTGGCCTTATAATTGGTAA+AGG 0.477296 tig0032533:+23354 Msa1449350:CDS
GGCGGAGTCTGGCCATAGCC+AGG 0.479964 tig0032533:-25611 None:intergenic
GACCCATCAGCTGGCTGTGA+AGG 0.481746 tig0032533:-25008 None:intergenic
GGTTATGGCTATGGGCAACC+TGG 0.488138 tig0032533:+24795 Msa1449350:CDS
GAGTCTGGCCATAGCCAGGC+TGG 0.490778 tig0032533:-25607 None:intergenic
CAACAAGCTGGTTATGGCTA+TGG 0.490845 tig0032533:+24786 Msa1449350:CDS
CCATAACCAGCTTGTTGCAC+AGG 0.496256 tig0032533:-24780 None:intergenic
GGCTGAGCATACCCGGAAGG+CGG 0.497089 tig0032533:-25512 None:intergenic
CTTCTGGCGGTGGCACTAGA+CGG 0.497957 tig0032533:+23180 Msa1449350:CDS
GATGGACCAGAGTATGATCC+AGG 0.501151 tig0032533:-24813 None:intergenic
CCAGTTGGTGGAATATCCAC+CGG 0.501220 tig0032533:-24889 None:intergenic
TTCTGTTGATGTATCACCTG+GGG 0.507849 tig0032533:-23610 None:intergenic
GTAGTGGGTTGGGAAGTTTG+GGG 0.508308 tig0032533:-25257 None:intergenic
CCCAGCAACAGCAAAATCCT+GGG 0.508607 tig0032533:+24982 Msa1449350:CDS
GTTGGTAGCATAGCCTTGCT+GGG 0.508853 tig0032533:-25285 None:intergenic
GGTGAGATGGTGCAGTGGAT+TGG 0.508922 tig0032533:-24914 None:intergenic
CCTAGCACAGCAGGAGGCTA+TGG 0.510304 tig0032533:+25461 Msa1449350:CDS
CTGCTCCCAGTTATGGCAGT+GGG 0.512052 tig0032533:+25180 Msa1449350:CDS
GACTGTGATTGACCATAAAC+AGG 0.513068 tig0032533:-25437 None:intergenic
TATGGAAGTCAACCACAGTC+TGG 0.513429 tig0032533:+25362 Msa1449350:CDS
CCATAGCCTCCTGCTGTGCT+AGG 0.513919 tig0032533:-25461 None:intergenic
TGCTGATTCAATTTGATCAG+GGG 0.517465 tig0032533:-23655 None:intergenic
TAACTCTGGCTGAGCATACC+CGG 0.518719 tig0032533:-25519 None:intergenic
GCTGCTCCTGTGCAACAAGC+TGG 0.519086 tig0032533:+24774 Msa1449350:CDS
CTTGGTTCGTTTGGGATCGT+AGG 0.519590 tig0032533:-21927 None:intergenic
GAAATACCTAATGGTAGGGT+TGG 0.520361 tig0032533:+22046 Msa1449350:CDS
TCACAGTCACCTAGCACAGC+AGG 0.521102 tig0032533:+25452 Msa1449350:CDS
GCTCTCTGAGTGCCTAACTC+TGG 0.522190 tig0032533:-25533 None:intergenic
TCAGCAGAAGAAACAGCGTC+AGG 0.524572 tig0032533:-22199 None:intergenic
GACCATAACCCTGTCCTGGT+TGG 0.526303 tig0032533:-25070 None:intergenic
ATAGGCCGCTTGGGAGGTAG+GGG 0.527994 tig0032533:-25342 None:intergenic
GCCTTGCTGGGCAACAGTAG+TGG 0.528254 tig0032533:-25273 None:intergenic
GCACCAGTGCAACCAGGGTA+TGG 0.529757 tig0032533:+25554 Msa1449350:CDS
ATCTGCTTGTGATCCATAGT+TGG 0.529858 tig0032533:-25231 None:intergenic
AGTTCGATGTCCGTGGCGGT+GGG 0.530955 tig0032533:-21827 None:intergenic
TGCAGAATTTGGTGCAATTG+TGG 0.531451 tig0032533:+26050 Msa1449350:three_prime_UTR
ATCCCGACCACCGTCTAGCT+GGG 0.531596 tig0032533:+24743 Msa1449350:CDS
TATCCACCGGGTTGCTGAGG+AGG 0.532429 tig0032533:-24876 None:intergenic
GGGAGTAATCCAACCCAAGA+AGG 0.532914 tig0032533:+25200 Msa1449350:CDS
GAGCCCAGCTAGACGGTGGT+CGG 0.534258 tig0032533:-24746 None:intergenic
GAGGGAGGAGCACCATAGCT+AGG 0.535314 tig0032533:-25392 None:intergenic
GGTGTTCTTATTGGTAAAGG+AGG 0.535918 tig0032533:+22067 Msa1449350:CDS
GCTGAAGCTGGGGCTTCTGG+CGG 0.536744 tig0032533:+23167 Msa1449350:CDS
AACAAGCTGGTTATGGCTAT+GGG 0.538613 tig0032533:+24787 Msa1449350:CDS
GCAGGAGGAGCCCAGCTAGA+CGG 0.538714 tig0032533:-24753 None:intergenic
CACCAGCAGTCTACTCATGC+AGG 0.540059 tig0032533:+24933 Msa1449350:CDS
TAAACAGGTGGATTTGCACT+TGG 0.540765 tig0032533:-25422 None:intergenic
GGGTATGCTCAGCCAGAGTT+AGG 0.541597 tig0032533:+25521 Msa1449350:CDS
TTATTAACTAGGCTGAAGCT+GGG 0.541792 tig0032533:+23156 Msa1449350:intron
TCTGCTCCCAGTTATGGCAG+TGG 0.543356 tig0032533:+25179 Msa1449350:CDS
ATGCCTCAGCCACCATATGC+AGG 0.544233 tig0032533:+24849 Msa1449350:CDS
GCTGGGCAACAGTAGTGGGT+TGG 0.546458 tig0032533:-25268 None:intergenic
CTGAGCATACCCGGAAGGCG+GGG 0.547333 tig0032533:-25510 None:intergenic
GCTCGTCTTCTCAGCGTCAC+CGG 0.548114 tig0032533:+21890 Msa1449350:CDS
TTTCTGTTGATGTATCACCT+GGG 0.548846 tig0032533:-23611 None:intergenic
CTGATCCTAATTCTCAGACT+AGG 0.549418 tig0032533:+22155 Msa1449350:CDS
TGAGGAGGATAGCCTGCATA+TGG 0.549695 tig0032533:-24861 None:intergenic
CAGAGAGCACCAGTGCAACC+AGG 0.550434 tig0032533:+25548 Msa1449350:CDS
TTGAGGAGTTCCTTGTTGGT+TGG 0.551933 tig0032533:-25303 None:intergenic
AAGAGTATGCAAGCTTCTAC+CGG 0.552343 tig0032533:+23390 Msa1449350:CDS
TAGCGATGGAGCAACTGCAC+AGG 0.553254 tig0032533:+25688 Msa1449350:CDS
TAGCCTGCATATGGTGGCTG+AGG 0.553849 tig0032533:-24852 None:intergenic
ATGCGCAACAACAACAATCT+GGG 0.554757 tig0032533:+25114 Msa1449350:CDS
GGACCATACCCTGGTTGCAC+TGG 0.555058 tig0032533:-25557 None:intergenic
GGCTATCCTCCTCAGCAACC+CGG 0.555442 tig0032533:+24870 Msa1449350:CDS
AGTGGATTGGTCCCAGTTGG+TGG 0.555514 tig0032533:-24901 None:intergenic
AGATTGAAATACCTAATGGT+AGG 0.556097 tig0032533:+22041 Msa1449350:CDS
AAACGAACCAAGTCCGATAA+CGG 0.556846 tig0032533:+21938 Msa1449350:CDS
TAGCCAGGCTGGCCACCTTG+AGG 0.557256 tig0032533:-25596 None:intergenic
TTGGTTAATCAAATCCTCAC+TGG 0.558998 tig0032533:+23684 Msa1449350:CDS
TCCTCTGGTTATAGCCAACC+AGG 0.559096 tig0032533:+25056 Msa1449350:CDS
CAATCATACGGTGCTCCTCA+AGG 0.564374 tig0032533:+25581 Msa1449350:CDS
CTCAGAAATTCAGGGAACTC+AGG 0.566464 tig0032533:+24696 Msa1449350:CDS
GAGAACCTGAATTCGTGCTC+CGG 0.566604 tig0032533:-23409 None:intergenic
GCTCCATCGCTAGCATACGC+TGG 0.567046 tig0032533:-25677 None:intergenic
GCTACTGCATAACCTGGTTG+AGG 0.568505 tig0032533:-25320 None:intergenic
TCTGGTTATGGACCTAGCTA+TGG 0.569183 tig0032533:+25380 Msa1449350:CDS
CTGTATGCAGACCCATCAGC+TGG 0.570591 tig0032533:-25017 None:intergenic
TAAGAATCAAACCCCGATTG+TGG 0.574402 tig0032533:-21965 None:intergenic
GGGTATGGTCCGCAATCATA+CGG 0.574711 tig0032533:+25569 Msa1449350:CDS
GGCCTTATAATTGGTAAAGG+AGG 0.574874 tig0032533:+23357 Msa1449350:CDS
GTAGGAGAGTGGTGGAGCGC+CGG 0.574920 tig0032533:-21909 None:intergenic
CCTTGCTGGGCAACAGTAGT+GGG 0.574987 tig0032533:-25272 None:intergenic
AGAATCGTCTCAGAAATTCA+GGG 0.575702 tig0032533:+24688 Msa1449350:intron
TGCAGTGGATTGGTCCCAGT+TGG 0.578827 tig0032533:-24904 None:intergenic
GCTCCAGCGTATGCTAGCGA+TGG 0.580238 tig0032533:+25674 Msa1449350:CDS
GGCATGTTATACTGCGGTGA+TGG 0.581623 tig0032533:-24831 None:intergenic
GATTGAAATACCTAATGGTA+GGG 0.585821 tig0032533:+22042 Msa1449350:CDS
CGGTGGATATTCCACCAACT+GGG 0.586403 tig0032533:+24890 Msa1449350:CDS
TGTTGCACAGGAGCAGCAGG+AGG 0.586770 tig0032533:-24768 None:intergenic
CAACAACAACAATCTGGGTA+TGG 0.587718 tig0032533:+25119 Msa1449350:CDS
GGGCAACCTGGATCATACTC+TGG 0.588895 tig0032533:+24807 Msa1449350:CDS
TGGCGGTGGCACTAGACGGA+TGG 0.589779 tig0032533:+23184 Msa1449350:CDS
GAATATCCACCGGGTTGCTG+AGG 0.591522 tig0032533:-24879 None:intergenic
CCCACTACTGTTGCCCAGCA+AGG 0.593544 tig0032533:+25272 Msa1449350:CDS
TTACTCCCACTGCCATAACT+GGG 0.595665 tig0032533:-25185 None:intergenic
ACCAAATTCTGCAAATGACA+TGG 0.598545 tig0032533:-26040 None:intergenic
CGTTTGGGATCGTAGGAGAG+TGG 0.599323 tig0032533:-21920 None:intergenic
ACGGATGGTTGCACAATCTG+GGG 0.600123 tig0032533:+23199 Msa1449350:CDS
CACCTGCATGAGTAGACTGC+TGG 0.604282 tig0032533:-24935 None:intergenic
AGTGAAAACACGGTGTGGGA+AGG 0.605750 tig0032533:-21726 None:intergenic
CAGTTGGTGGAATATCCACC+GGG 0.607367 tig0032533:-24888 None:intergenic
TAAGAACTATTTCCATATGA+CGG 0.608805 tig0032533:-25632 None:intergenic
TCCTAATTCTCAGACTAGGA+TGG 0.609354 tig0032533:+22159 Msa1449350:CDS
TGAGTAGACTGCTGGTGAGA+TGG 0.609532 tig0032533:-24927 None:intergenic
GGTTATAGCCAACCAGGACA+GGG 0.609709 tig0032533:+25062 Msa1449350:CDS
CCACCTTGCTGCGAGTATTG+CGG 0.611213 tig0032533:-21998 None:intergenic
GGAGTAATCCAACCCAAGAA+GGG 0.613412 tig0032533:+25201 Msa1449350:CDS
CATCAATGAAGTCCTTGCTG+AGG 0.616712 tig0032533:+22228 Msa1449350:CDS
TTGGGATCGTAGGAGAGTGG+TGG 0.618282 tig0032533:-21917 None:intergenic
AGAAAGTGAAAACACGGTGT+GGG 0.622964 tig0032533:-21730 None:intergenic
GGAGGAGCCCAGCTAGACGG+TGG 0.623688 tig0032533:-24750 None:intergenic
AGACTGTGGTTGACTTCCAT+AGG 0.624998 tig0032533:-25360 None:intergenic
TAATCAAATCCTCACTGGTG+AGG 0.625790 tig0032533:+23689 Msa1449350:CDS
CAACAAGGAACTCCTCAACC+AGG 0.626608 tig0032533:+25308 Msa1449350:CDS
TCTGTTGATGTATCACCTGG+GGG 0.627155 tig0032533:-23609 None:intergenic
GGTTATGGTCAAGAAAGCTA+TGG 0.629248 tig0032533:+25083 Msa1449350:CDS
ACTTCCATAGGCCGCTTGGG+AGG 0.629551 tig0032533:-25348 None:intergenic
TATGATTGCGGACCATACCC+TGG 0.630591 tig0032533:-25566 None:intergenic
TCCTGGTTGGCTATAACCAG+AGG 0.630777 tig0032533:-25057 None:intergenic
GGAGGATAGCCTGCATATGG+TGG 0.632205 tig0032533:-24858 None:intergenic
TATAGGGTTTGTTTCAATGG+CGG 0.632326 tig0032533:+21760 Msa1449350:exon
GTAGGGGCTACTGCATAACC+TGG 0.633003 tig0032533:-25326 None:intergenic
TTGAAACAAACCCTATAGAG+AGG 0.634104 tig0032533:-21754 None:intergenic
GACTTCGAGTTCGATGTCCG+TGG 0.636506 tig0032533:-21834 None:intergenic
AAATTAAAGCCACATCCCGA+AGG 0.638216 tig0032533:-25782 None:intergenic
GGCTATGCTACCAACCAACA+AGG 0.638622 tig0032533:+25293 Msa1449350:CDS
TGAGGAGCACCGTATGATTG+CGG 0.639312 tig0032533:-25578 None:intergenic
CAAACATATGATCAGCAACA+AGG 0.642194 tig0032533:+25149 Msa1449350:CDS
TATTAACTAGGCTGAAGCTG+GGG 0.642830 tig0032533:+23157 Msa1449350:intron
TCAGGTGGCTATACTCAGCA+AGG 0.643161 tig0032533:+24714 Msa1449350:CDS
CGATGAACAACCCACCGCCA+CGG 0.645490 tig0032533:+21817 Msa1449350:CDS
AAGAAAGTGAAAACACGGTG+TGG 0.646849 tig0032533:-21731 None:intergenic
AAGCCGCAATACTCGCAGCA+AGG 0.647111 tig0032533:+21995 Msa1449350:CDS
AGAGAGCACCAGTGCAACCA+GGG 0.650050 tig0032533:+25549 Msa1449350:CDS
ACTGCACAGGCTGTTCCACA+GGG 0.651647 tig0032533:+25701 Msa1449350:CDS
GATGTTGCTATCAAAATGGG+AGG 0.651780 tig0032533:-25809 None:intergenic
GGTTGGCTATAACCAGAGGA+AGG 0.652858 tig0032533:-25053 None:intergenic
TGGCTATAACCAGAGGAAGG+AGG 0.658440 tig0032533:-25050 None:intergenic
AGAAATTCAGGGAACTCAGG+TGG 0.658761 tig0032533:+24699 Msa1449350:CDS
GGTGTTACTAAAATGAACAC+AGG 0.662051 tig0032533:+26087 Msa1449350:three_prime_UTR
TCTGGCTGAGCATACCCGGA+AGG 0.665619 tig0032533:-25515 None:intergenic
CGGATGGTTGCACAATCTGG+GGG 0.666739 tig0032533:+23200 Msa1449350:CDS
CCAGCAACAGCAAAATCCTG+GGG 0.670269 tig0032533:+24983 Msa1449350:CDS
CAGTCACCTAGCACAGCAGG+AGG 0.674325 tig0032533:+25455 Msa1449350:CDS
AGAGGAAGAAAGTGAAAACA+CGG 0.674928 tig0032533:-21736 None:intergenic
TTCGAGTTCGATGTCCGTGG+CGG 0.677834 tig0032533:-21831 None:intergenic
CAGCAGTCTACTCATGCAGG+TGG 0.682332 tig0032533:+24936 Msa1449350:CDS
CTGCTGGTGAGATGGTGCAG+TGG 0.682356 tig0032533:-24919 None:intergenic
ATAACGGTGCTCCACAATCG+GGG 0.686584 tig0032533:+21954 Msa1449350:CDS
ACTTTAGCAACACCGCCCTG+TGG 0.690074 tig0032533:-25716 None:intergenic
CCGCAATACTCGCAGCAAGG+TGG 0.697265 tig0032533:+21998 Msa1449350:CDS
TGTGATTGACCATAAACAGG+TGG 0.715400 tig0032533:-25434 None:intergenic
TATCCTCCTCAGCAACCCGG+TGG 0.720805 tig0032533:+24873 Msa1449350:CDS
CTAGGTCCATAACCAGACTG+TGG 0.724556 tig0032533:-25374 None:intergenic
GCACAGGCTGTTCCACAGGG+CGG 0.725045 tig0032533:+25704 Msa1449350:CDS
GGTGACGCTGAGAAGACGAG+CGG 0.728767 tig0032533:-21888 None:intergenic
GAACTATTTCCATATGACGG+CGG 0.728848 tig0032533:-25629 None:intergenic
AGTAGCCCCTACCTCCCAAG+CGG 0.730653 tig0032533:+25337 Msa1449350:CDS
CAGCAACAGCAAAATCCTGG+GGG 0.736266 tig0032533:+24984 Msa1449350:CDS
TCATACGGTGCTCCTCAAGG+TGG 0.736772 tig0032533:+25584 Msa1449350:CDS
GGCTGAGGCATGTTATACTG+CGG 0.750903 tig0032533:-24837 None:intergenic
GATAACATACCTCACCAGTG+AGG 0.751081 tig0032533:-23698 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAAACTTAAAAAAGATT+TGG - tig0032533:23772-23791 None:intergenic 10.0%
!!! CTTTTTTAAGTTTAAAATTA+TGG + tig0032533:23775-23794 Msa1449350:intron 10.0%
!!! AAATTATGACTAATTTTTAT+TGG + tig0032533:24533-24552 Msa1449350:intron 10.0%
!!! TTTTTTTATACTCTTGTTTA+CGG + tig0032533:22254-22273 Msa1449350:intron 15.0%
!!! AAAAGGTCAATAATTTTATA+AGG - tig0032533:23857-23876 None:intergenic 15.0%
!!! AAAATGAATAACAATTTTGT+AGG - tig0032533:23890-23909 None:intergenic 15.0%
!! AAATTCACTTTCAATTATAA+TGG + tig0032533:24314-24333 Msa1449350:intron 15.0%
!!! TCTTATATTTTCAAAAACAT+AGG - tig0032533:26127-26146 None:intergenic 15.0%
!! TAATCAATGATATTTCACTA+AGG - tig0032533:22449-22468 None:intergenic 20.0%
!!! TGAAATACATTTTTACTAAC+AGG - tig0032533:22942-22961 None:intergenic 20.0%
!! TATATTATAGTTACAGAATC+AGG - tig0032533:23050-23069 None:intergenic 20.0%
!!! CTAATATCATCAATTTTTTC+AGG + tig0032533:23569-23588 Msa1449350:intron 20.0%
!! AAAGAACATTAAAAATCGAT+GGG + tig0032533:23631-23650 Msa1449350:CDS 20.0%
!!! ACACATTTTTTTGTTTTATC+TGG + tig0032533:23722-23741 Msa1449350:intron 20.0%
!! TTTAATCGTAAAACTAAACA+TGG - tig0032533:23809-23828 None:intergenic 20.0%
!!! TTAAAGTATTTCTTATCGTT+GGG + tig0032533:24207-24226 Msa1449350:intron 20.0%
!! ATTGAAAGTGAATTTAACAT+AGG - tig0032533:24309-24328 None:intergenic 20.0%
!!! TTTTATTTCATAGTTTGTTG+AGG + tig0032533:24361-24380 Msa1449350:intron 20.0%
!!! CTTCGTATATTTTTATGTTT+TGG + tig0032533:24614-24633 Msa1449350:intron 20.0%
!!! AGATGAAAACAAACTTATTT+TGG + tig0032533:25852-25871 Msa1449350:three_prime_UTR 20.0%
!! ATTGTGGAATATATGTTAAA+AGG + tig0032533:26066-26085 Msa1449350:three_prime_UTR 20.0%
! AAGAAGATTGAAATACCTAA+TGG + tig0032533:22037-22056 Msa1449350:CDS 25.0%
! ATAAAAAAAAAACCTCAGCA+AGG - tig0032533:22243-22262 None:intergenic 25.0%
! GTGATTTCAAAACATGAATT+GGG - tig0032533:22415-22434 None:intergenic 25.0%
! TACTCAAATGATGTTCAAAT+TGG + tig0032533:22560-22579 Msa1449350:intron 25.0%
! TAAATATGCTCAAATGATGT+TGG + tig0032533:23084-23103 Msa1449350:intron 25.0%
!!! ATACGTGTTGTTTATTAACT+AGG + tig0032533:23145-23164 Msa1449350:intron 25.0%
!!! TGTTTTGTTTATTCTCGTTT+GGG + tig0032533:23302-23321 Msa1449350:intron 25.0%
! GAAAGAACATTAAAAATCGA+TGG + tig0032533:23630-23649 Msa1449350:CDS 25.0%
!!! TTTATCTGGCTTATCATTTT+TGG + tig0032533:23736-23755 Msa1449350:intron 25.0%
! TCAACAAGTCAAAATTCAAA+AGG - tig0032533:24039-24058 None:intergenic 25.0%
!!! CAAAGTGTTGTCTAATTTTA+TGG - tig0032533:24075-24094 None:intergenic 25.0%
! TAAAATTAGACAACACTTTG+AGG + tig0032533:24075-24094 Msa1449350:intron 25.0%
!! CTTAAAGTATTTCTTATCGT+TGG + tig0032533:24206-24225 Msa1449350:intron 25.0%
! AGAATTGTTTCAATGTACTT+GGG + tig0032533:24418-24437 Msa1449350:intron 25.0%
!! CTAATTTTTATTGGCATCAA+CGG + tig0032533:24542-24561 Msa1449350:intron 25.0%
!! TAATTTTTATTGGCATCAAC+GGG + tig0032533:24543-24562 Msa1449350:intron 25.0%
!!! ATTTTTATGTTTTGGTACGT+TGG + tig0032533:24622-24641 Msa1449350:intron 25.0%
!!! TTTTTATGTTTTGGTACGTT+GGG + tig0032533:24623-24642 Msa1449350:intron 25.0%
! TAAGAACTATTTCCATATGA+CGG - tig0032533:25635-25654 None:intergenic 25.0%
! TCATATGGAAATAGTTCTTA+TGG + tig0032533:25635-25654 Msa1449350:CDS 25.0%
!! TTTGGTACTTGAATATTTTC+CGG + tig0032533:25870-25889 Msa1449350:three_prime_UTR 25.0%
! TTACATTTATCTAAGCTGTA+TGG + tig0032533:25957-25976 Msa1449350:three_prime_UTR 25.0%
!!! ATATTTTTACCTGAAATGAG+CGG + tig0032533:26010-26029 Msa1449350:three_prime_UTR 25.0%
AGATTGAAATACCTAATGGT+AGG + tig0032533:22041-22060 Msa1449350:CDS 30.0%
GATTGAAATACCTAATGGTA+GGG + tig0032533:22042-22061 Msa1449350:CDS 30.0%
TACTGTAATTCTTACTAGTC+AGG + tig0032533:22309-22328 Msa1449350:intron 30.0%
ACTGTAATTCTTACTAGTCA+GGG + tig0032533:22310-22329 Msa1449350:intron 30.0%
GGTGATTTCAAAACATGAAT+TGG - tig0032533:22416-22435 None:intergenic 30.0%
TTTCACTAAGGTAACAGTTA+CGG - tig0032533:22437-22456 None:intergenic 30.0%
! CTGATTTGATAACTGTTGTA+TGG + tig0032533:22482-22501 Msa1449350:intron 30.0%
CTCAAATGATGTTTCAATGA+CGG + tig0032533:22658-22677 Msa1449350:intron 30.0%
TCTAATCTTGCACAATTTCA+TGG + tig0032533:22776-22795 Msa1449350:intron 30.0%
TTGGTGAAACATTCACTAAT+AGG + tig0032533:22831-22850 Msa1449350:intron 30.0%
GATGCAAATACCAAACAATA+AGG + tig0032533:23235-23254 Msa1449350:CDS 30.0%
AAATACCAAACAATAAGGTG+TGG + tig0032533:23240-23259 Msa1449350:intron 30.0%
AATACCAAACAATAAGGTGT+GGG + tig0032533:23241-23260 Msa1449350:intron 30.0%
!!! GTGTTTTGTTTATTCTCGTT+TGG + tig0032533:23301-23320 Msa1449350:intron 30.0%
!! TTGCTGATTCAATTTGATCA+GGG - tig0032533:23659-23678 None:intergenic 30.0%
!! TTTGCTGATTCAATTTGATC+AGG - tig0032533:23660-23679 None:intergenic 30.0%
AATTGAATCAGCAAAGCAAT+TGG + tig0032533:23665-23684 Msa1449350:CDS 30.0%
TTGTAGGAACTAAACTCAAA+AGG - tig0032533:23874-23893 None:intergenic 30.0%
!!! GAGCACCTTATTTTTACAAA+AGG - tig0032533:23923-23942 None:intergenic 30.0%
TGAGTTATCATGGTTTCATT+TGG - tig0032533:23976-23995 None:intergenic 30.0%
TTGATAAATCATAGCTACTG+CGG - tig0032533:24008-24027 None:intergenic 30.0%
ATTGTCTCTATTTATGTTCC+TGG + tig0032533:24108-24127 Msa1449350:intron 30.0%
AATCGACAGAAATACACAAA+TGG - tig0032533:24169-24188 None:intergenic 30.0%
TCATATGCTCAACTTTCATT+TGG + tig0032533:24230-24249 Msa1449350:intron 30.0%
!!! ATTTGGCATAGTTTTATCCT+TGG + tig0032533:24247-24266 Msa1449350:intron 30.0%
!!! TTTGGCATAGTTTTATCCTT+GGG + tig0032533:24248-24267 Msa1449350:intron 30.0%
GAGAATTGTTTCAATGTACT+TGG + tig0032533:24417-24436 Msa1449350:intron 30.0%
GAATTGTTTCAATGTACTTG+GGG + tig0032533:24419-24438 Msa1449350:intron 30.0%
TTACTCACTAGAGCAAATAT+GGG - tig0032533:24482-24501 None:intergenic 30.0%
TTTACTCACTAGAGCAAATA+TGG - tig0032533:24483-24502 None:intergenic 30.0%
AATAGATGTACACACAAAAC+GGG - tig0032533:24593-24612 None:intergenic 30.0%
CAATAGATGTACACACAAAA+CGG - tig0032533:24594-24613 None:intergenic 30.0%
!!! CTAGTTCGCTTTTTAATTTG+TGG + tig0032533:24646-24665 Msa1449350:intron 30.0%
CAAGAGAAAAATCAACTCTT+GGG - tig0032533:25746-25765 None:intergenic 30.0%
ACAAGAGAAAAATCAACTCT+TGG - tig0032533:25747-25766 None:intergenic 30.0%
!! AGTTGATTTTTCTCTTGTGA+TGG + tig0032533:25749-25768 Msa1449350:exon 30.0%
TTCTCTTGTGATGGTTATTA+TGG + tig0032533:25758-25777 Msa1449350:three_prime_UTR 30.0%
ATCGATGTTGCTATCAAAAT+GGG - tig0032533:25815-25834 None:intergenic 30.0%
TATCGATGTTGCTATCAAAA+TGG - tig0032533:25816-25835 None:intergenic 30.0%
!! TTTTGATAGCAACATCGATA+TGG + tig0032533:25816-25835 Msa1449350:three_prime_UTR 30.0%
AGAGGAAGAAAGTGAAAACA+CGG - tig0032533:21739-21758 None:intergenic 35.0%
TTCACTTTCTTCCTCTCTAT+AGG + tig0032533:21743-21762 Msa1449350:five_prime_UTR 35.0%
TCACTTTCTTCCTCTCTATA+GGG + tig0032533:21744-21763 Msa1449350:five_prime_UTR 35.0%
TTGAAACAAACCCTATAGAG+AGG - tig0032533:21757-21776 None:intergenic 35.0%
! CTCTATAGGGTTTGTTTCAA+TGG + tig0032533:21757-21776 Msa1449350:exon 35.0%
! TATAGGGTTTGTTTCAATGG+CGG + tig0032533:21760-21779 Msa1449350:exon 35.0%
! TTCATCGTACTTGCGTTTTA+GGG - tig0032533:21804-21823 None:intergenic 35.0%
! GTTGGTGTTCTTATTGGTAA+AGG + tig0032533:22064-22083 Msa1449350:CDS 35.0%
AAGTATCTTCAGATGCAATC+TGG + tig0032533:22100-22119 Msa1449350:CDS 35.0%
! GATTCAAGTTACTCGTGATA+TGG + tig0032533:22129-22148 Msa1449350:CDS 35.0%
ACTAGGATGGTTGAACTTAT+GGG + tig0032533:22172-22191 Msa1449350:CDS 35.0%
CTGTTGTATGGAGTTTCAAT+AGG + tig0032533:22494-22513 Msa1449350:intron 35.0%
CAGTCAGATACAACAAAATC+AGG - tig0032533:22597-22616 None:intergenic 35.0%
TGATGTTTCAATGACGGTAA+AGG + tig0032533:22664-22683 Msa1449350:intron 35.0%
ATGACTGTAACTTTACCTCT+TGG + tig0032533:22812-22831 Msa1449350:intron 35.0%
TTAGTGAATGTTTCACCAAG+AGG - tig0032533:22830-22849 None:intergenic 35.0%
AAAACACCTCTTATCAGTGA+TGG - tig0032533:23025-23044 None:intergenic 35.0%
TGCTCAAATGATGTTGGAAT+TGG + tig0032533:23090-23109 Msa1449350:intron 35.0%
TTTATTAACTAGGCTGAAGC+TGG + tig0032533:23155-23174 Msa1449350:intron 35.0%
TTATTAACTAGGCTGAAGCT+GGG + tig0032533:23156-23175 Msa1449350:intron 35.0%
ATACCAAACAATAAGGTGTG+GGG + tig0032533:23242-23261 Msa1449350:intron 35.0%
GATGAAATATATCCAGTTGC+AGG + tig0032533:23264-23283 Msa1449350:intron 35.0%
GGTTTCTTGTGTACATCTTT+AGG + tig0032533:23332-23351 Msa1449350:intron 35.0%
TCTTGTGTACATCTTTAGGT+TGG + tig0032533:23336-23355 Msa1449350:intron 35.0%
!! CTTTAGGTTGGCCTTATAAT+TGG + tig0032533:23348-23367 Msa1449350:intron 35.0%
!! GTTGGCCTTATAATTGGTAA+AGG + tig0032533:23354-23373 Msa1449350:CDS 35.0%
CTCCTCCTTTACCAATTATA+AGG - tig0032533:23362-23381 None:intergenic 35.0%
AATATGAAATCCATGTCGTC+GGG - tig0032533:23534-23553 None:intergenic 35.0%
GAATATGAAATCCATGTCGT+CGG - tig0032533:23535-23554 None:intergenic 35.0%
TTTCTGTTGATGTATCACCT+GGG - tig0032533:23614-23633 None:intergenic 35.0%
!! TGCTGATTCAATTTGATCAG+GGG - tig0032533:23658-23677 None:intergenic 35.0%
TTGGTTAATCAAATCCTCAC+TGG + tig0032533:23684-23703 Msa1449350:CDS 35.0%
!! ATCTGGCTTATCATTTTTGG+AGG + tig0032533:23739-23758 Msa1449350:intron 35.0%
!! TCTGGCTTATCATTTTTGGA+GGG + tig0032533:23740-23759 Msa1449350:intron 35.0%
! CTGCGCCTTTTGTAAAAATA+AGG + tig0032533:23915-23934 Msa1449350:intron 35.0%
!! GTGCTCATATTTTTACAGTG+TGG + tig0032533:23937-23956 Msa1449350:intron 35.0%
GAAACCATGATAACTCAAAC+TGG + tig0032533:23979-23998 Msa1449350:intron 35.0%
TCAAACAAAATCTAACAGCC+AGG - tig0032533:24129-24148 None:intergenic 35.0%
TGATGTACGGTCTGTATAAT+TGG + tig0032533:24447-24466 Msa1449350:intron 35.0%
AGAATCGTCTCAGAAATTCA+GGG + tig0032533:24688-24707 Msa1449350:intron 35.0%
TGTTGCTGATCATATGTTTG+TGG - tig0032533:25149-25168 None:intergenic 35.0%
CAAACATATGATCAGCAACA+AGG + tig0032533:25149-25168 Msa1449350:CDS 35.0%
TATGATCAGCAACAAGGTTA+TGG + tig0032533:25155-25174 Msa1449350:CDS 35.0%
TGATGGTTATTATGGTCCTT+CGG + tig0032533:25766-25785 Msa1449350:three_prime_UTR 35.0%
! GTACTTGAATATTTTCCGGA+AGG + tig0032533:25874-25893 Msa1449350:three_prime_UTR 35.0%
! TATTTTCCGGAAGGTTGAAT+AGG + tig0032533:25883-25902 Msa1449350:three_prime_UTR 35.0%
! GAAAAATGCTAGTCTAACAC+TGG - tig0032533:25930-25949 None:intergenic 35.0%
! TCCATGTCATTTGCAGAATT+TGG + tig0032533:26039-26058 Msa1449350:three_prime_UTR 35.0%
ACCAAATTCTGCAAATGACA+TGG - tig0032533:26043-26062 None:intergenic 35.0%
!! GGTGTTACTAAAATGAACAC+AGG + tig0032533:26087-26106 Msa1449350:three_prime_UTR 35.0%
AGAAAGTGAAAACACGGTGT+GGG - tig0032533:21733-21752 None:intergenic 40.0%
AAGAAAGTGAAAACACGGTG+TGG - tig0032533:21734-21753 None:intergenic 40.0%
! GTTCATCGTACTTGCGTTTT+AGG - tig0032533:21805-21824 None:intergenic 40.0%
AACTTCTTGAGCTCGTTGTT+TGG - tig0032533:21867-21886 None:intergenic 40.0%
! TTATCGGACTTGGTTCGTTT+GGG - tig0032533:21938-21957 None:intergenic 40.0%
AAACGAACCAAGTCCGATAA+CGG + tig0032533:21938-21957 Msa1449350:CDS 40.0%
TAAGAATCAAACCCCGATTG+TGG - tig0032533:21968-21987 None:intergenic 40.0%
GAAATACCTAATGGTAGGGT+TGG + tig0032533:22046-22065 Msa1449350:CDS 40.0%
GGTGTTCTTATTGGTAAAGG+AGG + tig0032533:22067-22086 Msa1449350:CDS 40.0%
CTGATCCTAATTCTCAGACT+AGG + tig0032533:22155-22174 Msa1449350:CDS 40.0%
TCCTAATTCTCAGACTAGGA+TGG + tig0032533:22159-22178 Msa1449350:CDS 40.0%
ACCATCCTAGTCTGAGAATT+AGG - tig0032533:22163-22182 None:intergenic 40.0%
GACTAGGATGGTTGAACTTA+TGG + tig0032533:22171-22190 Msa1449350:CDS 40.0%
TATTAACTAGGCTGAAGCTG+GGG + tig0032533:23157-23176 Msa1449350:intron 40.0%
!! TATTCTCGTTTGGGTTGATG+TGG + tig0032533:23311-23330 Msa1449350:intron 40.0%
! GGCCTTATAATTGGTAAAGG+AGG + tig0032533:23357-23376 Msa1449350:CDS 40.0%
! AAGAGTATGCAAGCTTCTAC+CGG + tig0032533:23390-23409 Msa1449350:CDS 40.0%
TTCTGTTGATGTATCACCTG+GGG - tig0032533:23613-23632 None:intergenic 40.0%
CTTTCTGTTGATGTATCACC+TGG - tig0032533:23615-23634 None:intergenic 40.0%
TAATCAAATCCTCACTGGTG+AGG + tig0032533:23689-23708 Msa1449350:CDS 40.0%
! GTCTCCAGTTTGAGTTATCA+TGG - tig0032533:23986-24005 None:intergenic 40.0%
CAGAATCGTCTCAGAAATTC+AGG + tig0032533:24687-24706 Msa1449350:intron 40.0%
AACAAGCTGGTTATGGCTAT+GGG + tig0032533:24787-24806 Msa1449350:CDS 40.0%
GGTTATGGTCAAGAAAGCTA+TGG + tig0032533:25083-25102 Msa1449350:CDS 40.0%
AATGCGCAACAACAACAATC+TGG + tig0032533:25113-25132 Msa1449350:CDS 40.0%
ATGCGCAACAACAACAATCT+GGG + tig0032533:25114-25133 Msa1449350:CDS 40.0%
CAACAACAACAATCTGGGTA+TGG + tig0032533:25119-25138 Msa1449350:CDS 40.0%
ATCTGCTTGTGATCCATAGT+TGG - tig0032533:25234-25253 None:intergenic 40.0%
!! TTTGCACTTGGCTTTTGAGA+GGG - tig0032533:25413-25432 None:intergenic 40.0%
!! ATTTGCACTTGGCTTTTGAG+AGG - tig0032533:25414-25433 None:intergenic 40.0%
! TAAACAGGTGGATTTGCACT+TGG - tig0032533:25425-25444 None:intergenic 40.0%
AGTGCAAATCCACCTGTTTA+TGG + tig0032533:25425-25444 Msa1449350:CDS 40.0%
TGTGATTGACCATAAACAGG+TGG - tig0032533:25437-25456 None:intergenic 40.0%
GACTGTGATTGACCATAAAC+AGG - tig0032533:25440-25459 None:intergenic 40.0%
GAACTATTTCCATATGACGG+CGG - tig0032533:25632-25651 None:intergenic 40.0%
GGAAATAGTTCTTATGGTGC+TGG + tig0032533:25641-25660 Msa1449350:CDS 40.0%
!! TTATGGTGCTGGTTATGTTC+AGG + tig0032533:25652-25671 Msa1449350:CDS 40.0%
GATGGTTATTATGGTCCTTC+GGG + tig0032533:25767-25786 Msa1449350:three_prime_UTR 40.0%
AAATTAAAGCCACATCCCGA+AGG - tig0032533:25785-25804 None:intergenic 40.0%
GATGTTGCTATCAAAATGGG+AGG - tig0032533:25812-25831 None:intergenic 40.0%
TTAGCTCCTATTCAACCTTC+CGG - tig0032533:25892-25911 None:intergenic 40.0%
!! TGCAGAATTTGGTGCAATTG+TGG + tig0032533:26050-26069 Msa1449350:three_prime_UTR 40.0%
GTGTGGGAAGGAATTGGATT+AGG - tig0032533:21717-21736 None:intergenic 45.0%
! GTTATCGGACTTGGTTCGTT+TGG - tig0032533:21939-21958 None:intergenic 45.0%
AGAACACCAACCCTACCATT+AGG - tig0032533:22055-22074 None:intergenic 45.0%
!! GGTAGGGTTGGTGTTCTTAT+TGG + tig0032533:22058-22077 Msa1449350:CDS 45.0%
CATCAATGAAGTCCTTGCTG+AGG + tig0032533:22228-22247 Msa1449350:CDS 45.0%
GTGCAACCATCACTGATAAG+AGG + tig0032533:23016-23035 Msa1449350:intron 45.0%
CATCCCCACACCTTATTGTT+TGG - tig0032533:23248-23267 None:intergenic 45.0%
CCAAAAAACATGCCTGCAAC+TGG - tig0032533:23279-23298 None:intergenic 45.0%
!!! CCAGTTGCAGGCATGTTTTT+TGG + tig0032533:23276-23295 Msa1449350:intron 45.0%
TCTGTTGATGTATCACCTGG+GGG - tig0032533:23612-23631 None:intergenic 45.0%
GATAACATACCTCACCAGTG+AGG - tig0032533:23701-23720 None:intergenic 45.0%
TTGAGGCTGACCTGTTAGAT+TGG + tig0032533:24378-24397 Msa1449350:intron 45.0%
TGAGGCTGACCTGTTAGATT+GGG + tig0032533:24379-24398 Msa1449350:intron 45.0%
! TGACCTGTTAGATTGGGTTG+AGG + tig0032533:24385-24404 Msa1449350:intron 45.0%
!! GACCTGTTAGATTGGGTTGA+GGG + tig0032533:24386-24405 Msa1449350:intron 45.0%
TTCCCTCAACCCAATCTAAC+AGG - tig0032533:24391-24410 None:intergenic 45.0%
!! TGTTAGATTGGGTTGAGGGA+AGG + tig0032533:24390-24409 Msa1449350:intron 45.0%
ACTTGGGGCTTAGTGATGTA+CGG + tig0032533:24434-24453 Msa1449350:intron 45.0%
TATTGGCATCAACGGGAATG+AGG + tig0032533:24550-24569 Msa1449350:intron 45.0%
CTCAGAAATTCAGGGAACTC+AGG + tig0032533:24696-24715 Msa1449350:CDS 45.0%
AGAAATTCAGGGAACTCAGG+TGG + tig0032533:24699-24718 Msa1449350:CDS 45.0%
CAACAAGCTGGTTATGGCTA+TGG + tig0032533:24786-24805 Msa1449350:CDS 45.0%
TTACTCCCACTGCCATAACT+GGG - tig0032533:25188-25207 None:intergenic 45.0%
ATTACTCCCACTGCCATAAC+TGG - tig0032533:25189-25208 None:intergenic 45.0%
GGAGTAATCCAACCCAAGAA+GGG + tig0032533:25201-25220 Msa1449350:CDS 45.0%
!! AGTAGTGGGTTGGGAAGTTT+GGG - tig0032533:25261-25280 None:intergenic 45.0%
TTGAGGAGTTCCTTGTTGGT+TGG - tig0032533:25306-25325 None:intergenic 45.0%
! AGACTGTGGTTGACTTCCAT+AGG - tig0032533:25363-25382 None:intergenic 45.0%
TATGGAAGTCAACCACAGTC+TGG + tig0032533:25362-25381 Msa1449350:CDS 45.0%
AGTCAACCACAGTCTGGTTA+TGG + tig0032533:25368-25387 Msa1449350:CDS 45.0%
TCTGGTTATGGACCTAGCTA+TGG + tig0032533:25380-25399 Msa1449350:CDS 45.0%
TATTATGGTCCTTCGGGATG+TGG + tig0032533:25773-25792 Msa1449350:three_prime_UTR 45.0%
!!! TTTTTTAAGTTTAAAATTAT+GGG + tig0032533:23776-23795 Msa1449350:intron 5.0%
AACACGGTGTGGGAAGGAAT+TGG - tig0032533:21723-21742 None:intergenic 50.0%
AGTGAAAACACGGTGTGGGA+AGG - tig0032533:21729-21748 None:intergenic 50.0%
! CTTGGTTCGTTTGGGATCGT+AGG - tig0032533:21930-21949 None:intergenic 50.0%
!! CGATTGTGGAGCACCGTTAT+CGG - tig0032533:21954-21973 None:intergenic 50.0%
! CGATAACGGTGCTCCACAAT+CGG + tig0032533:21952-21971 Msa1449350:CDS 50.0%
! GATAACGGTGCTCCACAATC+GGG + tig0032533:21953-21972 Msa1449350:CDS 50.0%
ATAACGGTGCTCCACAATCG+GGG + tig0032533:21954-21973 Msa1449350:CDS 50.0%
TCGCAGCAAGGTGGTAGTTA+TGG + tig0032533:22007-22026 Msa1449350:CDS 50.0%
TCAGCAGAAGAAACAGCGTC+AGG - tig0032533:22202-22221 None:intergenic 50.0%
AGACGGATGGTTGCACAATC+TGG + tig0032533:23197-23216 Msa1449350:CDS 50.0%
GACGGATGGTTGCACAATCT+GGG + tig0032533:23198-23217 Msa1449350:CDS 50.0%
ACGGATGGTTGCACAATCTG+GGG + tig0032533:23199-23218 Msa1449350:CDS 50.0%
TTCTACCGGAGCACGAATTC+AGG + tig0032533:23404-23423 Msa1449350:CDS 50.0%
GAGAACCTGAATTCGTGCTC+CGG - tig0032533:23412-23431 None:intergenic 50.0%
TCAGGTGGCTATACTCAGCA+AGG + tig0032533:24714-24733 Msa1449350:CDS 50.0%
!! CCATAACCAGCTTGTTGCAC+AGG - tig0032533:24783-24802 None:intergenic 50.0%
CCTGTGCAACAAGCTGGTTA+TGG + tig0032533:24780-24799 Msa1449350:CDS 50.0%
GATGGACCAGAGTATGATCC+AGG - tig0032533:24816-24835 None:intergenic 50.0%
GGCATGTTATACTGCGGTGA+TGG - tig0032533:24834-24853 None:intergenic 50.0%
GGCTGAGGCATGTTATACTG+CGG - tig0032533:24840-24859 None:intergenic 50.0%
TGAGGAGGATAGCCTGCATA+TGG - tig0032533:24864-24883 None:intergenic 50.0%
!! CAGTTGGTGGAATATCCACC+GGG - tig0032533:24891-24910 None:intergenic 50.0%
!! CCAGTTGGTGGAATATCCAC+CGG - tig0032533:24892-24911 None:intergenic 50.0%
CGGTGGATATTCCACCAACT+GGG + tig0032533:24890-24909 Msa1449350:CDS 50.0%
TGAGTAGACTGCTGGTGAGA+TGG - tig0032533:24930-24949 None:intergenic 50.0%
!! TTTGCTGTTGCTGGGGTTGT+TGG - tig0032533:24977-24996 None:intergenic 50.0%
!!! CCAGGATTTTGCTGTTGCTG+GGG - tig0032533:24984-25003 None:intergenic 50.0%
!!! CCCAGGATTTTGCTGTTGCT+GGG - tig0032533:24985-25004 None:intergenic 50.0%
CCCAGCAACAGCAAAATCCT+GGG + tig0032533:24982-25001 Msa1449350:CDS 50.0%
CCAGCAACAGCAAAATCCTG+GGG + tig0032533:24983-25002 Msa1449350:CDS 50.0%
CAGCAACAGCAAAATCCTGG+GGG + tig0032533:24984-25003 Msa1449350:CDS 50.0%
TACAGTCAACCTCCTTCCTC+TGG + tig0032533:25041-25060 Msa1449350:CDS 50.0%
TGGCTATAACCAGAGGAAGG+AGG - tig0032533:25053-25072 None:intergenic 50.0%
! GGTTGGCTATAACCAGAGGA+AGG - tig0032533:25056-25075 None:intergenic 50.0%
TCCTCTGGTTATAGCCAACC+AGG + tig0032533:25056-25075 Msa1449350:CDS 50.0%
! TCCTGGTTGGCTATAACCAG+AGG - tig0032533:25060-25079 None:intergenic 50.0%
TGGTTATAGCCAACCAGGAC+AGG + tig0032533:25061-25080 Msa1449350:CDS 50.0%
GGTTATAGCCAACCAGGACA+GGG + tig0032533:25062-25081 Msa1449350:CDS 50.0%
TCTTGACCATAACCCTGTCC+TGG - tig0032533:25077-25096 None:intergenic 50.0%
! TATGGCTCTGCTCCCAGTTA+TGG + tig0032533:25173-25192 Msa1449350:CDS 50.0%
GGGAGTAATCCAACCCAAGA+AGG + tig0032533:25200-25219 Msa1449350:CDS 50.0%
!! TAGTGGGTTGGGAAGTTTGG+GGG - tig0032533:25259-25278 None:intergenic 50.0%
!! GTAGTGGGTTGGGAAGTTTG+GGG - tig0032533:25260-25279 None:intergenic 50.0%
!! CAGTAGTGGGTTGGGAAGTT+TGG - tig0032533:25262-25281 None:intergenic 50.0%
!! GTTGGTAGCATAGCCTTGCT+GGG - tig0032533:25288-25307 None:intergenic 50.0%
GGCTATGCTACCAACCAACA+AGG + tig0032533:25293-25312 Msa1449350:CDS 50.0%
CTGGTTGAGGAGTTCCTTGT+TGG - tig0032533:25310-25329 None:intergenic 50.0%
CAACAAGGAACTCCTCAACC+AGG + tig0032533:25308-25327 Msa1449350:CDS 50.0%
GCTACTGCATAACCTGGTTG+AGG - tig0032533:25323-25342 None:intergenic 50.0%
TTGACTTCCATAGGCCGCTT+GGG - tig0032533:25354-25373 None:intergenic 50.0%
CTAGGTCCATAACCAGACTG+TGG - tig0032533:25377-25396 None:intergenic 50.0%
TAACTCTGGCTGAGCATACC+CGG - tig0032533:25522-25541 None:intergenic 50.0%
TATGATTGCGGACCATACCC+TGG - tig0032533:25569-25588 None:intergenic 50.0%
GGGTATGGTCCGCAATCATA+CGG + tig0032533:25569-25588 Msa1449350:CDS 50.0%
!! TGAGGAGCACCGTATGATTG+CGG - tig0032533:25581-25600 None:intergenic 50.0%
CAATCATACGGTGCTCCTCA+AGG + tig0032533:25581-25600 Msa1449350:CDS 50.0%
! TTCGAGTTCGATGTCCGTGG+CGG - tig0032533:21834-21853 None:intergenic 55.0%
! GACTTCGAGTTCGATGTCCG+TGG - tig0032533:21837-21856 None:intergenic 55.0%
TTGGGATCGTAGGAGAGTGG+TGG - tig0032533:21920-21939 None:intergenic 55.0%
! CGTTTGGGATCGTAGGAGAG+TGG - tig0032533:21923-21942 None:intergenic 55.0%
!! TGGAGCACCGTTATCGGACT+TGG - tig0032533:21948-21967 None:intergenic 55.0%
AAGCCGCAATACTCGCAGCA+AGG + tig0032533:21995-22014 Msa1449350:CDS 55.0%
! CCACCTTGCTGCGAGTATTG+CGG - tig0032533:22001-22020 None:intergenic 55.0%
CGGATGGTTGCACAATCTGG+GGG + tig0032533:23200-23219 Msa1449350:CDS 55.0%
ATACCTTTGCATCCTCCCCC+AGG + tig0032533:23594-23613 Msa1449350:CDS 55.0%
GTTGATGTATCACCTGGGGG+AGG - tig0032533:23609-23628 None:intergenic 55.0%
GTAGATGAGCGCAAGTCCCA+AGG - tig0032533:24267-24286 None:intergenic 55.0%
GGTTATGGCTATGGGCAACC+TGG + tig0032533:24795-24814 Msa1449350:CDS 55.0%
GGGCAACCTGGATCATACTC+TGG + tig0032533:24807-24826 Msa1449350:CDS 55.0%
ATGCCTCAGCCACCATATGC+AGG + tig0032533:24849-24868 Msa1449350:CDS 55.0%
TAGCCTGCATATGGTGGCTG+AGG - tig0032533:24855-24874 None:intergenic 55.0%
GGAGGATAGCCTGCATATGG+TGG - tig0032533:24861-24880 None:intergenic 55.0%
GAATATCCACCGGGTTGCTG+AGG - tig0032533:24882-24901 None:intergenic 55.0%
CCGGTGGATATTCCACCAAC+TGG + tig0032533:24889-24908 Msa1449350:CDS 55.0%
!! AGTGGATTGGTCCCAGTTGG+TGG - tig0032533:24904-24923 None:intergenic 55.0%
!! TGCAGTGGATTGGTCCCAGT+TGG - tig0032533:24907-24926 None:intergenic 55.0%
GGTGAGATGGTGCAGTGGAT+TGG - tig0032533:24917-24936 None:intergenic 55.0%
CACCAGCAGTCTACTCATGC+AGG + tig0032533:24933-24952 Msa1449350:CDS 55.0%
CACCTGCATGAGTAGACTGC+TGG - tig0032533:24938-24957 None:intergenic 55.0%
CAGCAGTCTACTCATGCAGG+TGG + tig0032533:24936-24955 Msa1449350:CDS 55.0%
CCCCAGCAACAGCAAAATCC+TGG + tig0032533:24981-25000 Msa1449350:CDS 55.0%
!!! CCCCAGGATTTTGCTGTTGC+TGG - tig0032533:24986-25005 None:intergenic 55.0%
GTCCTTCACAGCCAGCTGAT+GGG + tig0032533:25006-25025 Msa1449350:CDS 55.0%
CTGTATGCAGACCCATCAGC+TGG - tig0032533:25020-25039 None:intergenic 55.0%
AGCCAACCAGGACAGGGTTA+TGG + tig0032533:25068-25087 Msa1449350:CDS 55.0%
GACCATAACCCTGTCCTGGT+TGG - tig0032533:25073-25092 None:intergenic 55.0%
TCTGCTCCCAGTTATGGCAG+TGG + tig0032533:25179-25198 Msa1449350:CDS 55.0%
CTGCTCCCAGTTATGGCAGT+GGG + tig0032533:25180-25199 Msa1449350:CDS 55.0%
! GTTGGAAGCGTGCCCTTCTT+GGG - tig0032533:25216-25235 None:intergenic 55.0%
! AGTTGGAAGCGTGCCCTTCT+TGG - tig0032533:25217-25236 None:intergenic 55.0%
! GAAGGGCACGCTTCCAACTA+TGG + tig0032533:25218-25237 Msa1449350:CDS 55.0%
!! AGTGGGTTGGGAAGTTTGGG+GGG - tig0032533:25258-25277 None:intergenic 55.0%
!! CTGGGCAACAGTAGTGGGTT+GGG - tig0032533:25270-25289 None:intergenic 55.0%
CCTTGCTGGGCAACAGTAGT+GGG - tig0032533:25275-25294 None:intergenic 55.0%
!! GGTTGGTAGCATAGCCTTGC+TGG - tig0032533:25289-25308 None:intergenic 55.0%
GTAGGGGCTACTGCATAACC+TGG - tig0032533:25329-25348 None:intergenic 55.0%
! GTTGACTTCCATAGGCCGCT+TGG - tig0032533:25355-25374 None:intergenic 55.0%
!! GCACTTGGCTTTTGAGAGGG+AGG - tig0032533:25410-25429 None:intergenic 55.0%
TCACAGTCACCTAGCACAGC+AGG + tig0032533:25452-25471 Msa1449350:CDS 55.0%
GGGTATGCTCAGCCAGAGTT+AGG + tig0032533:25521-25540 Msa1449350:CDS 55.0%
GCTCTCTGAGTGCCTAACTC+TGG - tig0032533:25536-25555 None:intergenic 55.0%
!! AGAGAGCACCAGTGCAACCA+GGG + tig0032533:25549-25568 Msa1449350:CDS 55.0%
TCATACGGTGCTCCTCAAGG+TGG + tig0032533:25584-25603 Msa1449350:CDS 55.0%
TTCCATATGACGGCGGAGTC+TGG - tig0032533:25625-25644 None:intergenic 55.0%
TAGCGATGGAGCAACTGCAC+AGG + tig0032533:25688-25707 Msa1449350:CDS 55.0%
AACTGCACAGGCTGTTCCAC+AGG + tig0032533:25700-25719 Msa1449350:CDS 55.0%
ACTGCACAGGCTGTTCCACA+GGG + tig0032533:25701-25720 Msa1449350:CDS 55.0%
ACTTTAGCAACACCGCCCTG+TGG - tig0032533:25719-25738 None:intergenic 55.0%
GGAACTTCGCCGCTCATTTC+AGG - tig0032533:26022-26041 None:intergenic 55.0%
CGATGAACAACCCACCGCCA+CGG + tig0032533:21817-21836 Msa1449350:CDS 60.0%
AGTTCGATGTCCGTGGCGGT+GGG - tig0032533:21830-21849 None:intergenic 60.0%
GGTGACGCTGAGAAGACGAG+CGG - tig0032533:21891-21910 None:intergenic 60.0%
GCTCGTCTTCTCAGCGTCAC+CGG + tig0032533:21890-21909 Msa1449350:CDS 60.0%
CCGCAATACTCGCAGCAAGG+TGG + tig0032533:21998-22017 Msa1449350:CDS 60.0%
TAGGCTGAAGCTGGGGCTTC+TGG + tig0032533:23164-23183 Msa1449350:intron 60.0%
CTTCTGGCGGTGGCACTAGA+CGG + tig0032533:23180-23199 Msa1449350:CDS 60.0%
TCACCTGGGGGAGGATGCAA+AGG - tig0032533:23600-23619 None:intergenic 60.0%
AGCTAGACGGTGGTCGGGAT+TGG - tig0032533:24743-24762 None:intergenic 60.0%
AATCCCGACCACCGTCTAGC+TGG + tig0032533:24742-24761 Msa1449350:CDS 60.0%
ATCCCGACCACCGTCTAGCT+GGG + tig0032533:24743-24762 Msa1449350:CDS 60.0%
TGTTGCACAGGAGCAGCAGG+AGG - tig0032533:24771-24790 None:intergenic 60.0%
! GCTTGTTGCACAGGAGCAGC+AGG - tig0032533:24774-24793 None:intergenic 60.0%
GCTGCTCCTGTGCAACAAGC+TGG + tig0032533:24774-24793 Msa1449350:CDS 60.0%
GGCTATCCTCCTCAGCAACC+CGG + tig0032533:24870-24889 Msa1449350:CDS 60.0%
TATCCTCCTCAGCAACCCGG+TGG + tig0032533:24873-24892 Msa1449350:CDS 60.0%
TATCCACCGGGTTGCTGAGG+AGG - tig0032533:24879-24898 None:intergenic 60.0%
CTGCTGGTGAGATGGTGCAG+TGG - tig0032533:24922-24941 None:intergenic 60.0%
GGTCCTTCACAGCCAGCTGA+TGG + tig0032533:25005-25024 Msa1449350:CDS 60.0%
GACCCATCAGCTGGCTGTGA+AGG - tig0032533:25011-25030 None:intergenic 60.0%
GAAGCGTGCCCTTCTTGGGT+TGG - tig0032533:25212-25231 None:intergenic 60.0%
!! GCTGGGCAACAGTAGTGGGT+TGG - tig0032533:25271-25290 None:intergenic 60.0%
CCCACTACTGTTGCCCAGCA+AGG + tig0032533:25272-25291 Msa1449350:CDS 60.0%
GCCTTGCTGGGCAACAGTAG+TGG - tig0032533:25276-25295 None:intergenic 60.0%
AGTAGCCCCTACCTCCCAAG+CGG + tig0032533:25337-25356 Msa1449350:CDS 60.0%
ATAGGCCGCTTGGGAGGTAG+GGG - tig0032533:25345-25364 None:intergenic 60.0%
CATAGGCCGCTTGGGAGGTA+GGG - tig0032533:25346-25365 None:intergenic 60.0%
ACTTCCATAGGCCGCTTGGG+AGG - tig0032533:25351-25370 None:intergenic 60.0%
!! GAGGGAGGAGCACCATAGCT+AGG - tig0032533:25395-25414 None:intergenic 60.0%
CAGTCACCTAGCACAGCAGG+AGG + tig0032533:25455-25474 Msa1449350:CDS 60.0%
CCATAGCCTCCTGCTGTGCT+AGG - tig0032533:25464-25483 None:intergenic 60.0%
CCTAGCACAGCAGGAGGCTA+TGG + tig0032533:25461-25480 Msa1449350:CDS 60.0%
TCTGGCTGAGCATACCCGGA+AGG - tig0032533:25518-25537 None:intergenic 60.0%
!! CAGAGAGCACCAGTGCAACC+AGG + tig0032533:25548-25567 Msa1449350:CDS 60.0%
GCACCAGTGCAACCAGGGTA+TGG + tig0032533:25554-25573 Msa1449350:CDS 60.0%
GGACCATACCCTGGTTGCAC+TGG - tig0032533:25560-25579 None:intergenic 60.0%
GCTCCAGCGTATGCTAGCGA+TGG + tig0032533:25674-25693 Msa1449350:CDS 60.0%
GCTCCATCGCTAGCATACGC+TGG - tig0032533:25680-25699 None:intergenic 60.0%
GAGTTCGATGTCCGTGGCGG+TGG - tig0032533:21831-21850 None:intergenic 65.0%
! GTAGGAGAGTGGTGGAGCGC+CGG - tig0032533:21912-21931 None:intergenic 65.0%
GCTGAAGCTGGGGCTTCTGG+CGG + tig0032533:23167-23186 Msa1449350:CDS 65.0%
TGGCGGTGGCACTAGACGGA+TGG + tig0032533:23184-23203 Msa1449350:CDS 65.0%
CAGCTGACTGCCCGACGACA+TGG + tig0032533:23521-23540 Msa1449350:intron 65.0%
AGCCCAGCTAGACGGTGGTC+GGG - tig0032533:24748-24767 None:intergenic 65.0%
GAGCCCAGCTAGACGGTGGT+CGG - tig0032533:24749-24768 None:intergenic 65.0%
GCAGGAGGAGCCCAGCTAGA+CGG - tig0032533:24756-24775 None:intergenic 65.0%
CCATAGGCCGCTTGGGAGGT+AGG - tig0032533:25347-25366 None:intergenic 65.0%
CCTACCTCCCAAGCGGCCTA+TGG + tig0032533:25344-25363 Msa1449350:CDS 65.0%
TGAGCATACCCGGAAGGCGG+GGG - tig0032533:25512-25531 None:intergenic 65.0%
CTGAGCATACCCGGAAGGCG+GGG - tig0032533:25513-25532 None:intergenic 65.0%
GCTGAGCATACCCGGAAGGC+GGG - tig0032533:25514-25533 None:intergenic 65.0%
GGCTGAGCATACCCGGAAGG+CGG - tig0032533:25515-25534 None:intergenic 65.0%
! TAGCCAGGCTGGCCACCTTG+AGG - tig0032533:25599-25618 None:intergenic 65.0%
CAAGGTGGCCAGCCTGGCTA+TGG + tig0032533:25599-25618 Msa1449350:CDS 65.0%
GAGTCTGGCCATAGCCAGGC+TGG - tig0032533:25610-25629 None:intergenic 65.0%
GGCCAGACTCCGCCGTCATA+TGG + tig0032533:25620-25639 Msa1449350:CDS 65.0%
GCACAGGCTGTTCCACAGGG+CGG + tig0032533:25704-25723 Msa1449350:CDS 65.0%
GAAGCTGGGGCTTCTGGCGG+TGG + tig0032533:23170-23189 Msa1449350:CDS 70.0%
GGAGGAGCCCAGCTAGACGG+TGG - tig0032533:24753-24772 None:intergenic 70.0%
GCTGGCTGTGAAGGACCCCC+AGG - tig0032533:25002-25021 None:intergenic 70.0%
!! GAAGGCGGGGGCTGGCTAGA+GGG - tig0032533:25500-25519 None:intergenic 70.0%
TCTAGCCAGCCCCCGCCTTC+CGG + tig0032533:25500-25519 Msa1449350:CDS 70.0%
GCTCCTCAAGGTGGCCAGCC+TGG + tig0032533:25593-25612 Msa1449350:CDS 70.0%
GGCGGAGTCTGGCCATAGCC+AGG - tig0032533:25614-25633 None:intergenic 70.0%
!! GGAAGGCGGGGGCTGGCTAG+AGG - tig0032533:25501-25520 None:intergenic 75.0%
CTAGCCAGCCCCCGCCTTCC+GGG + tig0032533:25501-25520 Msa1449350:CDS 75.0%
CATACCCGGAAGGCGGGGGC+TGG - tig0032533:25508-25527 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0032533 gene 21687 26148 21687 ID=Msa1449350;Name=Msa1449350
tig0032533 mRNA 21687 26148 21687 ID=Msa1449350-mRNA-1;Parent=Msa1449350;Name=Msa1449350-mRNA-1;_AED=0.07;_eAED=0.07;_QI=89|1|1|1|1|1|5|394|606
tig0032533 exon 21687 22249 21687 ID=Msa1449350-mRNA-1:exon:16905;Parent=Msa1449350-mRNA-1
tig0032533 exon 23167 23256 23167 ID=Msa1449350-mRNA-1:exon:16906;Parent=Msa1449350-mRNA-1
tig0032533 exon 23354 23425 23354 ID=Msa1449350-mRNA-1:exon:16907;Parent=Msa1449350-mRNA-1
tig0032533 exon 23591 23710 23591 ID=Msa1449350-mRNA-1:exon:16908;Parent=Msa1449350-mRNA-1
tig0032533 exon 24690 26148 24690 ID=Msa1449350-mRNA-1:exon:16909;Parent=Msa1449350-mRNA-1
tig0032533 five_prime_UTR 21687 21775 21687 ID=Msa1449350-mRNA-1:five_prime_utr;Parent=Msa1449350-mRNA-1
tig0032533 CDS 21776 22249 21776 ID=Msa1449350-mRNA-1:cds;Parent=Msa1449350-mRNA-1
tig0032533 CDS 23167 23256 23167 ID=Msa1449350-mRNA-1:cds;Parent=Msa1449350-mRNA-1
tig0032533 CDS 23354 23425 23354 ID=Msa1449350-mRNA-1:cds;Parent=Msa1449350-mRNA-1
tig0032533 CDS 23591 23710 23591 ID=Msa1449350-mRNA-1:cds;Parent=Msa1449350-mRNA-1
tig0032533 CDS 24690 25754 24690 ID=Msa1449350-mRNA-1:cds;Parent=Msa1449350-mRNA-1
tig0032533 three_prime_UTR 25755 26148 25755 ID=Msa1449350-mRNA-1:three_prime_utr;Parent=Msa1449350-mRNA-1
Gene Sequence

>Msa1449350

ATGGCGGAAGAAGCACAGTACGCAACCCTAAAACGCAAGTACGATGAACAACCCACCGCCACGGACATCGAACTCGAAGTCGCAAACGCCAAACAACGAGCTCAAGAAGTTGCCGCTCGTCTTCTCAGCGTCACCGGCGCTCCACCACTCTCCTACGATCCCAAACGAACCAAGTCCGATAACGGTGCTCCACAATCGGGGTTTGATTCTTACGATTTGAAGCCGCAATACTCGCAGCAAGGTGGTAGTTATGGTTCTAGTAAGAAGATTGAAATACCTAATGGTAGGGTTGGTGTTCTTATTGGTAAAGGAGGTGAAACTATTAAGTATCTTCAGATGCAATCTGGTGCTAAGATTCAAGTTACTCGTGATATGGATGCTGATCCTAATTCTCAGACTAGGATGGTTGAACTTATGGGTACTCCTGACGCTGTTTCTTCTGCTGAGAAACTCATCAATGAAGTCCTTGCTGAGGCTGAAGCTGGGGCTTCTGGCGGTGGCACTAGACGGATGGTTGCACAATCTGGGGGTGATGAATTTGTGATGCAAATACCAAACAATAAGGTTGGCCTTATAATTGGTAAAGGAGGAGAAACAATAAAGAGTATGCAAGCTTCTACCGGAGCACGAATTCAGGTGATACCTTTGCATCCTCCCCCAGGTGATACATCAACAGAAAGAACATTAAAAATCGATGGGACCCCTGATCAAATTGAATCAGCAAAGCAATTGGTTAATCAAATCCTCACTGGTGAGAATCGTCTCAGAAATTCAGGGAACTCAGGTGGCTATACTCAGCAAGGTTACCAATCCCGACCACCGTCTAGCTGGGCTCCTCCTGCTGCTCCTGTGCAACAAGCTGGTTATGGCTATGGGCAACCTGGATCATACTCTGGTCCATCACCGCAGTATAACATGCCTCAGCCACCATATGCAGGCTATCCTCCTCAGCAACCCGGTGGATATTCCACCAACTGGGACCAATCCACTGCACCATCTCACCAGCAGTCTACTCATGCAGGTGGTTATGATTATTACAACCAACAACCCCAGCAACAGCAAAATCCTGGGGGTCCTTCACAGCCAGCTGATGGGTCTGCATACAGTTACAGTCAACCTCCTTCCTCTGGTTATAGCCAACCAGGACAGGGTTATGGTCAAGAAAGCTATGGTGCGTATAATGCGCAACAACAACAATCTGGGTATGGTCAGCCACAAACATATGATCAGCAACAAGGTTATGGCTCTGCTCCCAGTTATGGCAGTGGGAGTAATCCAACCCAAGAAGGGCACGCTTCCAACTATGGATCACAAGCAGATACCCCCCAAACTTCCCAACCCACTACTGTTGCCCAGCAAGGCTATGCTACCAACCAACAAGGAACTCCTCAACCAGGTTATGCAGTAGCCCCTACCTCCCAAGCGGCCTATGGAAGTCAACCACAGTCTGGTTATGGACCTAGCTATGGTGCTCCTCCCTCTCAAAAGCCAAGTGCAAATCCACCTGTTTATGGTCAATCACAGTCACCTAGCACAGCAGGAGGCTATGGTCAGTCAGCTTATCCCTCTAGCCAGCCCCCGCCTTCCGGGTATGCTCAGCCAGAGTTAGGCACTCAGAGAGCACCAGTGCAACCAGGGTATGGTCCGCAATCATACGGTGCTCCTCAAGGTGGCCAGCCTGGCTATGGCCAGACTCCGCCGTCATATGGAAATAGTTCTTATGGTGCTGGTTATGTTCAGGCTCCAGCGTATGCTAGCGATGGAGCAACTGCACAGGCTGTTCCACAGGGCGGTGTTGCTAAAGTGTCACCCAAGAGTTGA

Protein sequence

>Msa1449350

MAEEAQYATLKRKYDEQPTATDIELEVANAKQRAQEVAARLLSVTGAPPLSYDPKRTKSDNGAPQSGFDSYDLKPQYSQQGGSYGSSKKIEIPNGRVGVLIGKGGETIKYLQMQSGAKIQVTRDMDADPNSQTRMVELMGTPDAVSSAEKLINEVLAEAEAGASGGGTRRMVAQSGGDEFVMQIPNNKVGLIIGKGGETIKSMQASTGARIQVIPLHPPPGDTSTERTLKIDGTPDQIESAKQLVNQILTGENRLRNSGNSGGYTQQGYQSRPPSSWAPPAAPVQQAGYGYGQPGSYSGPSPQYNMPQPPYAGYPPQQPGGYSTNWDQSTAPSHQQSTHAGGYDYYNQQPQQQQNPGGPSQPADGSAYSYSQPPSSGYSQPGQGYGQESYGAYNAQQQQSGYGQPQTYDQQQGYGSAPSYGSGSNPTQEGHASNYGSQADTPQTSQPTTVAQQGYATNQQGTPQPGYAVAPTSQAAYGSQPQSGYGPSYGAPPSQKPSANPPVYGQSQSPSTAGGYGQSAYPSSQPPPSGYAQPELGTQRAPVQPGYGPQSYGAPQGGQPGYGQTPPSYGNSSYGAGYVQAPAYASDGATAQAVPQGGVAKVSPKS*