Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662400 | XP_003598118.2 | 91.688 | 385 | 26 | 1 | 1 | 379 | 1 | 385 | 0.0 | 691 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662400 | G7IV96 | 91.688 | 385 | 26 | 1 | 1 | 379 | 1 | 385 | 0.0 | 691 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0662400 | Msa0905450 | 0.800262 | 1.565529e-48 | -8.615850e-47 |
| Msa0662400 | Msa1070900 | 0.800848 | 1.188583e-48 | -8.615850e-47 |
| Msa0662400 | Msa1258940 | 0.810502 | 1.116324e-50 | -8.615850e-47 |
| Msa0662400 | Msa1365210 | 0.820283 | 7.443596e-53 | -8.615850e-47 |
| Msa0433270 | Msa0662400 | 0.807642 | 4.574005e-50 | -8.615850e-47 |
| Msa0500510 | Msa0662400 | 0.825239 | 5.223194e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662400 | MtrunA17_Chr3g0078481 | 91.169 | 385 | 26 | 2 | 1 | 379 | 1 | 383 | 0.0 | 681 |
| Msa0662400 | MtrunA17_Chr3g0114921 | 63.760 | 367 | 127 | 5 | 12 | 374 | 79 | 443 | 1.11e-157 | 451 |
| Msa0662400 | MtrunA17_Chr3g0114931 | 58.839 | 379 | 143 | 7 | 1 | 376 | 71 | 439 | 1.36e-133 | 389 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662400 | AT2G41705.3 | 57.507 | 353 | 132 | 5 | 25 | 374 | 119 | 456 | 4.99e-125 | 368 |
| Msa0662400 | AT2G41705.2 | 57.507 | 353 | 132 | 5 | 25 | 374 | 119 | 456 | 4.99e-125 | 368 |
| Msa0662400 | AT2G41705.4 | 57.507 | 353 | 132 | 5 | 25 | 374 | 119 | 456 | 4.99e-125 | 368 |
| Msa0662400 | AT2G41705.1 | 57.507 | 353 | 132 | 5 | 25 | 374 | 119 | 456 | 4.99e-125 | 368 |
Find 88 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAACATCACTTAGCATTTA+TGG | 0.120335 | 4_4:-44911 | Msa0662400:CDS |
| TAATATATTGTGTGCCTATT+TGG | 0.123773 | 4_4:-43843 | Msa0662400:CDS |
| TATACTCTGGACAAATTATT+TGG | 0.186106 | 4_4:-46055 | Msa0662400:CDS |
| AGACAAGACAATGGCAAATT+TGG | 0.195139 | 4_4:-44941 | Msa0662400:CDS |
| GTTTCAAGTGGCTTCTTATA+AGG | 0.252360 | 4_4:-44996 | Msa0662400:CDS |
| CGATTAAATGGACATGGTTT+AGG | 0.261909 | 4_4:-44745 | Msa0662400:CDS |
| AATTCATCCATTCTCCAAAT+AGG | 0.275234 | 4_4:+43829 | None:intergenic |
| CACGACAATATTACCTTCTA+TGG | 0.281497 | 4_4:+43791 | None:intergenic |
| GATCAAGAGGTTTGTTGAAT+TGG | 0.285501 | 4_4:-44723 | Msa0662400:CDS |
| ATGCTTGAACTCAGTGTTAC+TGG | 0.290373 | 4_4:-45673 | Msa0662400:CDS |
| TGCTTCATATTTGATTCATT+TGG | 0.319711 | 4_4:-46834 | Msa0662400:CDS |
| GATTGTGATACTATTGTAAA+AGG | 0.321077 | 4_4:-44009 | Msa0662400:CDS |
| AATTACAGTTTGTTTAAATT+CGG | 0.322113 | 4_4:+43642 | None:intergenic |
| CTAAACCATGTCCATTTAAT+CGG | 0.327520 | 4_4:+44746 | None:intergenic |
| GTTGCGCTTGGCTTTCTAAT+AGG | 0.338178 | 4_4:-45637 | Msa0662400:intron |
| ATCAAATGTGTCCAAGTATC+TGG | 0.347261 | 4_4:-45758 | Msa0662400:CDS |
| CTGTGGATCGCTTGCATTGT+TGG | 0.347554 | 4_4:-44802 | Msa0662400:CDS |
| GGCTTGTTATGGGGTATTAG+TGG | 0.347642 | 4_4:-44868 | Msa0662400:CDS |
| GCTTGCATTGTTGGACCTAT+TGG | 0.348772 | 4_4:-44793 | Msa0662400:CDS |
| AACTCAGTGTTACTGGGAAT+TGG | 0.357866 | 4_4:-45666 | Msa0662400:CDS |
| GGCATACAGTTTGGCCTGTT+GGG | 0.378588 | 4_4:-43988 | Msa0662400:CDS |
| ATTGTAAAAGGCATACAGTT+TGG | 0.380838 | 4_4:-43997 | Msa0662400:CDS |
| GAGCAAGAACATAGGAGGTT+AGG | 0.393117 | 4_4:+47370 | None:intergenic |
| TAAAGAATTGCCAAAGCTAC+TGG | 0.400015 | 4_4:-46861 | Msa0662400:CDS |
| AGCTTTGGCAATTCTTTACT+AGG | 0.401365 | 4_4:+46866 | None:intergenic |
| GACCTATTGGTGTGTGGATA+AGG | 0.408566 | 4_4:-44780 | Msa0662400:CDS |
| GCACTAACAACTGGTTACTT+AGG | 0.409745 | 4_4:-45730 | Msa0662400:CDS |
| AATTGGCTCTTTGTTGCGCT+TGG | 0.415498 | 4_4:-45649 | Msa0662400:CDS |
| TTGTTCAGAGGAGACAGAAT+TGG | 0.419387 | 4_4:+47188 | None:intergenic |
| TACAATAGTATCACAATCTC+TGG | 0.421227 | 4_4:+44014 | None:intergenic |
| GACAAGACAATGGCAAATTT+GGG | 0.422912 | 4_4:-44940 | Msa0662400:CDS |
| GTCTAACAACGTTCAGCGGC+TGG | 0.427914 | 4_4:-45705 | Msa0662400:CDS |
| AAATGTCAGGTAGCCATAGA+AGG | 0.429474 | 4_4:-43804 | Msa0662400:three_prime_UTR |
| GTGACAGTTTATTTACTTGA+AGG | 0.431162 | 4_4:-43771 | Msa0662400:three_prime_UTR |
| CAGTACTCAAACAGCCCAAC+AGG | 0.431398 | 4_4:+43974 | None:intergenic |
| ATAAGGCTAAACATGACTTC+AGG | 0.434639 | 4_4:-44979 | Msa0662400:CDS |
| AACAAATCGCAGCTTCATCT+TGG | 0.435427 | 4_4:-47216 | Msa0662400:CDS |
| TTGTTGAATTGGATGCGATT+TGG | 0.438896 | 4_4:-44712 | Msa0662400:CDS |
| ATGGATGAATTATAAATGTC+AGG | 0.442659 | 4_4:-43817 | Msa0662400:exon |
| CCTTGACCTTCCTTCTAACA+TGG | 0.442683 | 4_4:-45990 | Msa0662400:intron |
| TGAGAGAAAGCGAGCACCCT+TGG | 0.443628 | 4_4:-43921 | Msa0662400:CDS |
| CACCTTATCCACACACCAAT+AGG | 0.449570 | 4_4:+44778 | None:intergenic |
| AAAGTAGAGACCATGTTAGA+AGG | 0.450049 | 4_4:+45980 | None:intergenic |
| CTGGCTGTTGCACTAACAAC+TGG | 0.450496 | 4_4:-45739 | Msa0662400:CDS |
| GAAGCACTATCCAGTAGCTT+TGG | 0.461327 | 4_4:+46851 | None:intergenic |
| TATCCCAAATATGATGGAAA+AGG | 0.466392 | 4_4:+45032 | None:intergenic |
| CACTAACAACTGGTTACTTA+GGG | 0.468627 | 4_4:-45729 | Msa0662400:CDS |
| TAGTGCAACAGCCAGATACT+TGG | 0.469450 | 4_4:+45747 | None:intergenic |
| AGGCATACAGTTTGGCCTGT+TGG | 0.477755 | 4_4:-43989 | Msa0662400:CDS |
| CTCCTTCAATGCTTAAAAGA+GGG | 0.481988 | 4_4:+47160 | None:intergenic |
| TCTCCTTCAATGCTTAAAAG+AGG | 0.496148 | 4_4:+47159 | None:intergenic |
| AGATTCTGAAGACATACAAC+AGG | 0.496202 | 4_4:-47136 | Msa0662400:intron |
| AGGAAGGTCAAGGTAAAGAA+TGG | 0.496325 | 4_4:+46000 | None:intergenic |
| TTGTGTGCCTATTTGGAGAA+TGG | 0.496415 | 4_4:-43836 | Msa0662400:CDS |
| GAATTCATAGAGAAGAAGAT+AGG | 0.501417 | 4_4:+47346 | None:intergenic |
| CTAGTCACATGACCAACACT+AGG | 0.506897 | 4_4:+46031 | None:intergenic |
| TGTCTCTGCTGCTTGTATCA+TGG | 0.508900 | 4_4:-44674 | Msa0662400:CDS |
| TAAACCATGTCCATTTAATC+GGG | 0.509369 | 4_4:+44747 | None:intergenic |
| AAATTATTTGGCCCTAGTGT+TGG | 0.512875 | 4_4:-46043 | Msa0662400:CDS |
| TTTGGGATAGAAACAGCTAA+AGG | 0.521423 | 4_4:-45018 | Msa0662400:CDS |
| ATGATTGCTGAATTCAAGAA+TGG | 0.528647 | 4_4:-44838 | Msa0662400:CDS |
| TGTTTCTATCCCAAATATGA+TGG | 0.543659 | 4_4:+45026 | None:intergenic |
| TGCTTGAACTCAGTGTTACT+GGG | 0.546484 | 4_4:-45672 | Msa0662400:CDS |
| TTCATTGAACTCAGCGACAA+AGG | 0.556646 | 4_4:+43945 | None:intergenic |
| GGACATGGTTTAGGATCAAG+AGG | 0.558631 | 4_4:-44736 | Msa0662400:CDS |
| AGATAGGAGAGCAAGAACAT+AGG | 0.559890 | 4_4:+47362 | None:intergenic |
| GGTATTAACAAGATATACTC+TGG | 0.561065 | 4_4:-46068 | Msa0662400:CDS |
| AAGAGGGGACATTTGTTCAG+AGG | 0.563333 | 4_4:+47176 | None:intergenic |
| GGTCAAGGTAAAGAATGGTT+TGG | 0.564374 | 4_4:+46005 | None:intergenic |
| GTATAAACATATGCTCTCCA+AGG | 0.565816 | 4_4:+43904 | None:intergenic |
| TAGAGACCATGTTAGAAGGA+AGG | 0.567138 | 4_4:+45984 | None:intergenic |
| CATGCAATGGAGCATGATGT+TGG | 0.573305 | 4_4:-47243 | Msa0662400:exon |
| CTATTGGTGTGTGGATAAGG+TGG | 0.575476 | 4_4:-44777 | Msa0662400:CDS |
| CATACACATATCACATGCAA+TGG | 0.577375 | 4_4:-47256 | Msa0662400:exon |
| TCCTTCAATGCTTAAAAGAG+GGG | 0.582845 | 4_4:+47161 | None:intergenic |
| TTATCCCGATTAAATGGACA+TGG | 0.592003 | 4_4:-44751 | Msa0662400:CDS |
| AAACAGCTAAAGGTTTCAAG+TGG | 0.608710 | 4_4:-45008 | Msa0662400:CDS |
| TAGGAGAGCAAGAACATAGG+AGG | 0.610475 | 4_4:+47365 | None:intergenic |
| TTGTTGGACCTATTGGTGTG+TGG | 0.624990 | 4_4:-44786 | Msa0662400:CDS |
| CCATGTTAGAAGGAAGGTCA+AGG | 0.630281 | 4_4:+45990 | None:intergenic |
| GGGAGTCTAACAACGTTCAG+CGG | 0.633659 | 4_4:-45709 | Msa0662400:CDS |
| TATAAACATATGCTCTCCAA+GGG | 0.634225 | 4_4:+43905 | None:intergenic |
| ATGGTGAAAATGCTTATCTG+TGG | 0.657260 | 4_4:-44819 | Msa0662400:CDS |
| TAGTCACATGACCAACACTA+GGG | 0.657737 | 4_4:+46032 | None:intergenic |
| ACATCACTTAGCATTTATGG+TGG | 0.675588 | 4_4:-44908 | Msa0662400:CDS |
| AAGACAATGGCAAATTTGGG+AGG | 0.677891 | 4_4:-44937 | Msa0662400:CDS |
| TAGCTGCTACTTGAAAACAC+TGG | 0.719362 | 4_4:+43681 | None:intergenic |
| AACTAGTAGAGACAAGACAA+TGG | 0.733067 | 4_4:-44950 | Msa0662400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATATCTTTTATGATTTG+AGG | + | chr4_4:44027-44046 | None:intergenic | 15.0% |
| !!! | AGAATTTTTTTGAAAGTATT+TGG | + | chr4_4:45177-45196 | None:intergenic | 15.0% |
| !!! | ATTTTTATGATTATCTTTCT+AGG | - | chr4_4:45203-45222 | Msa0662400:intron | 15.0% |
| !! | AACGTTGTTTAAATAAAAAA+CGG | + | chr4_4:45702-45721 | None:intergenic | 15.0% |
| !!! | TTTTGTTTATATTCATGAAT+AGG | - | chr4_4:46511-46530 | Msa0662400:intron | 15.0% |
| !!! | TTCTTACTATTTTGATATTA+TGG | - | chr4_4:46928-46947 | Msa0662400:intron | 15.0% |
| !!! | TCTTACTATTTTGATATTAT+GGG | - | chr4_4:46929-46948 | Msa0662400:intron | 15.0% |
| !!! | AATTACAGTTTGTTTAAATT+CGG | + | chr4_4:47394-47413 | None:intergenic | 15.0% |
| !!! | AAGATTCAAAACATTTTTGT+TGG | - | chr4_4:43943-43962 | Msa0662400:CDS | 20.0% |
| !!! | TTTTGTTTTGCTATAGTAAA+TGG | - | chr4_4:44108-44127 | Msa0662400:intron | 20.0% |
| !!! | TCATTTTCTGTTTATAACAT+TGG | - | chr4_4:44632-44651 | Msa0662400:intron | 20.0% |
| !! | TATAATGAACTTATGAATTC+TGG | - | chr4_4:44867-44886 | Msa0662400:CDS | 20.0% |
| !!! | ATTTAATTTCATGTTTCAAG+AGG | - | chr4_4:46592-46611 | Msa0662400:intron | 20.0% |
| !!! | ATATATTCCTCATTCTTTTT+AGG | - | chr4_4:47162-47181 | Msa0662400:CDS | 20.0% |
| !!! | TATATTCCTCATTCTTTTTA+GGG | - | chr4_4:47163-47182 | Msa0662400:CDS | 20.0% |
| !!! | TTATCTCTTTTTCAATGAAA+AGG | - | chr4_4:47317-47336 | Msa0662400:five_prime_UTR | 20.0% |
| ! | TAGTGTAAAATGTTTCACAT+TGG | + | chr4_4:44058-44077 | None:intergenic | 25.0% |
| ! | TGCTTCATATTTGATTCATT+TGG | - | chr4_4:44199-44218 | Msa0662400:intron | 25.0% |
| !! | AATTTCAGCTTTATGATGTT+TGG | - | chr4_4:44487-44506 | Msa0662400:intron | 25.0% |
| ! | GTTGTTCATACTTTATACAA+TGG | + | chr4_4:44755-44774 | None:intergenic | 25.0% |
| ! | ATTCATAAGGTTGAAAATGA+AGG | + | chr4_4:44798-44817 | None:intergenic | 25.0% |
| !!! | TTGTTTTGCTATTATAATGC+AGG | - | chr4_4:44944-44963 | Msa0662400:CDS | 25.0% |
| ! | TATACTCTGGACAAATTATT+TGG | - | chr4_4:44978-44997 | Msa0662400:CDS | 25.0% |
| !!! | ACTTTAAGGTGCAAAAATTT+AGG | + | chr4_4:45094-45113 | None:intergenic | 25.0% |
| !!! | CAGAGCTTTTTAAAACTTTA+AGG | + | chr4_4:45108-45127 | None:intergenic | 25.0% |
| ! | TTATGATTATCTTTCTAGGT+TGG | - | chr4_4:45207-45226 | Msa0662400:intron | 25.0% |
| ! | TCTAATAGGTAATGTTAAGA+CGG | - | chr4_4:45410-45429 | Msa0662400:intron | 25.0% |
| !!! | ACTGTTCAATCACTTTTTAT+CGG | - | chr4_4:45572-45591 | Msa0662400:intron | 25.0% |
| !! | TTTTATATGAGAACTAGAGA+AGG | - | chr4_4:45642-45661 | Msa0662400:CDS | 25.0% |
| ! | TTGATTATTGTTACACTCAT+CGG | + | chr4_4:45855-45874 | None:intergenic | 25.0% |
| ! | TAATTAAACAGACACATATG+TGG | + | chr4_4:45906-45925 | None:intergenic | 25.0% |
| !! | AGGATGAGCTTTTAAATAAT+TGG | - | chr4_4:45953-45972 | Msa0662400:intron | 25.0% |
| !!! | TAGTTGATGAATCAAATTGT+AGG | + | chr4_4:46418-46437 | None:intergenic | 25.0% |
| !! | AAAAATGAAAGTTGGTTCAA+CGG | + | chr4_4:46665-46684 | None:intergenic | 25.0% |
| ! | ATACAAAGTTGTAACAAAAG+TGG | + | chr4_4:46691-46710 | None:intergenic | 25.0% |
| !! | GTTGACGTTTTTAAACATAA+AGG | - | chr4_4:46828-46847 | Msa0662400:CDS | 25.0% |
| ! | AGATATGAAACACATGTTAA+AGG | - | chr4_4:46870-46889 | Msa0662400:CDS | 25.0% |
| ! | GATTGTGATACTATTGTAAA+AGG | - | chr4_4:47024-47043 | Msa0662400:intron | 25.0% |
| ! | TAATATATTGTGTGCCTATT+TGG | - | chr4_4:47190-47209 | Msa0662400:CDS | 25.0% |
| ! | ATGGATGAATTATAAATGTC+AGG | - | chr4_4:47216-47235 | Msa0662400:CDS | 25.0% |
| GAATTCATAGAGAAGAAGAT+AGG | + | chr4_4:43690-43709 | None:intergenic | 30.0% | |
| TGAGGATTAAGATTGAATGA+CGG | + | chr4_4:44009-44028 | None:intergenic | 30.0% | |
| !! | TTGATTCATTTGGCTGTTTT+TGG | - | chr4_4:44209-44228 | Msa0662400:intron | 30.0% |
| TATTTCCATTTGACCATTAC+TGG | - | chr4_4:44309-44328 | Msa0662400:intron | 30.0% | |
| ! | ACTATTTTCAGTTCATGTAG+TGG | - | chr4_4:44350-44369 | Msa0662400:intron | 30.0% |
| GGTATTAACAAGATATACTC+TGG | - | chr4_4:44965-44984 | Msa0662400:CDS | 30.0% | |
| AAAAATTTAGGAGTGAGGAA+GGG | + | chr4_4:45082-45101 | None:intergenic | 30.0% | |
| GTTTGATAAGTATGTGTTAG+TGG | - | chr4_4:45436-45455 | Msa0662400:intron | 30.0% | |
| ATAAGTATGTGTTAGTGGTA+TGG | - | chr4_4:45441-45460 | Msa0662400:intron | 30.0% | |
| !! | GAGAGTAAGTTTTGTAATAC+AGG | - | chr4_4:45812-45831 | Msa0662400:intron | 30.0% |
| ! | ACTCATCGGAAACTTTTTAT+AGG | + | chr4_4:45841-45860 | None:intergenic | 30.0% |
| TTAAATAATTGGAGTTCTGC+AGG | - | chr4_4:45964-45983 | Msa0662400:intron | 30.0% | |
| TAAATAATTGGAGTTCTGCA+GGG | - | chr4_4:45965-45984 | Msa0662400:intron | 30.0% | |
| ! | TTGCCTTTTCCATCATATTT+GGG | - | chr4_4:45998-46017 | Msa0662400:CDS | 30.0% |
| ! | TATCCCAAATATGATGGAAA+AGG | + | chr4_4:46004-46023 | None:intergenic | 30.0% |
| ! | TGTTTCTATCCCAAATATGA+TGG | + | chr4_4:46010-46029 | None:intergenic | 30.0% |
| CAAACATCACTTAGCATTTA+TGG | - | chr4_4:46122-46141 | Msa0662400:intron | 30.0% | |
| ATGATTGCTGAATTCAAGAA+TGG | - | chr4_4:46195-46214 | Msa0662400:intron | 30.0% | |
| TAAACCATGTCCATTTAATC+GGG | + | chr4_4:46289-46308 | None:intergenic | 30.0% | |
| CTAAACCATGTCCATTTAAT+CGG | + | chr4_4:46290-46309 | None:intergenic | 30.0% | |
| AGAAAAGGAAAACTACATTC+AGG | - | chr4_4:46561-46580 | Msa0662400:intron | 30.0% | |
| GAAAAGGAAAACTACATTCA+GGG | - | chr4_4:46562-46581 | Msa0662400:intron | 30.0% | |
| AGTGGAACAAAAATGAAAGT+TGG | + | chr4_4:46673-46692 | None:intergenic | 30.0% | |
| TGCATGATCATTGAATGATA+TGG | - | chr4_4:46710-46729 | Msa0662400:intron | 30.0% | |
| ATATCTCACTTGTTTGATGT+AGG | - | chr4_4:46990-47009 | Msa0662400:intron | 30.0% | |
| TACAATAGTATCACAATCTC+TGG | + | chr4_4:47022-47041 | None:intergenic | 30.0% | |
| ! | ATTGTAAAAGGCATACAGTT+TGG | - | chr4_4:47036-47055 | Msa0662400:intron | 30.0% |
| TATAAACATATGCTCTCCAA+GGG | + | chr4_4:47131-47150 | None:intergenic | 30.0% | |
| TAAGATCCCTAAAAAGAATG+AGG | + | chr4_4:47172-47191 | None:intergenic | 30.0% | |
| AATTCATCCATTCTCCAAAT+AGG | + | chr4_4:47207-47226 | None:intergenic | 30.0% | |
| GTGACAGTTTATTTACTTGA+AGG | - | chr4_4:47262-47281 | Msa0662400:five_prime_UTR | 30.0% | |
| !!! | TCTTTTTCAATGAAAAGGTC+AGG | - | chr4_4:47322-47341 | Msa0662400:five_prime_UTR | 30.0% |
| CATACACATATCACATGCAA+TGG | - | chr4_4:43777-43796 | Msa0662400:three_prime_UTR | 35.0% | |
| TCCTTCAATGCTTAAAAGAG+GGG | + | chr4_4:43875-43894 | None:intergenic | 35.0% | |
| CTCCTTCAATGCTTAAAAGA+GGG | + | chr4_4:43876-43895 | None:intergenic | 35.0% | |
| TCTCCTTCAATGCTTAAAAG+AGG | + | chr4_4:43877-43896 | None:intergenic | 35.0% | |
| ! | AGATTCTGAAGACATACAAC+AGG | - | chr4_4:43897-43916 | Msa0662400:CDS | 35.0% |
| ! | AGCTTTGGCAATTCTTTACT+AGG | + | chr4_4:44170-44189 | None:intergenic | 35.0% |
| TAAAGAATTGCCAAAGCTAC+TGG | - | chr4_4:44172-44191 | Msa0662400:intron | 35.0% | |
| !!! | TTGGCTGTTTTTGGTATTCT+CGG | - | chr4_4:44218-44237 | Msa0662400:intron | 35.0% |
| TGAGATAGAAGCTCATGTAA+TGG | - | chr4_4:44568-44587 | Msa0662400:intron | 35.0% | |
| GACTATCTTCATCATCTTTG+AGG | - | chr4_4:44670-44689 | Msa0662400:CDS | 35.0% | |
| ! | TTCATCATCTTTGAGGATCT+AGG | - | chr4_4:44677-44696 | Msa0662400:CDS | 35.0% |
| !!! | CAGTTTTGAGCAGATTCATA+AGG | + | chr4_4:44811-44830 | None:intergenic | 35.0% |
| TCTGGTCATACTTTCATACT+AGG | - | chr4_4:44885-44904 | Msa0662400:CDS | 35.0% | |
| AAATTATTTGGCCCTAGTGT+TGG | - | chr4_4:44990-45009 | Msa0662400:CDS | 35.0% | |
| AAAGTAGAGACCATGTTAGA+AGG | + | chr4_4:45056-45075 | None:intergenic | 35.0% | |
| CAAAAATTTAGGAGTGAGGA+AGG | + | chr4_4:45083-45102 | None:intergenic | 35.0% | |
| GCAAAAGTCTTTGATGCTTA+TGG | + | chr4_4:45144-45163 | None:intergenic | 35.0% | |
| !!! | TAGGTTGGTTCTTTTCTGAT+GGG | - | chr4_4:45222-45241 | Msa0662400:intron | 35.0% |
| ATCAAATGTGTCCAAGTATC+TGG | - | chr4_4:45275-45294 | Msa0662400:intron | 35.0% | |
| CACTAACAACTGGTTACTTA+GGG | - | chr4_4:45304-45323 | Msa0662400:intron | 35.0% | |
| TATATGACAAAACTCACCGT+TGG | - | chr4_4:45600-45619 | Msa0662400:intron | 35.0% | |
| CAAAGGAACTTTCAATCCAA+CGG | + | chr4_4:45619-45638 | None:intergenic | 35.0% | |
| ! | GTTCTCATATAAAAGCGCAA+AGG | + | chr4_4:45636-45655 | None:intergenic | 35.0% |
| TAAACAGACACATATGTGGA+AGG | + | chr4_4:45902-45921 | None:intergenic | 35.0% | |
| TTAATTATCGCAGTCTATGC+AGG | - | chr4_4:45919-45938 | Msa0662400:intron | 35.0% | |
| TAATTATCGCAGTCTATGCA+GGG | - | chr4_4:45920-45939 | Msa0662400:intron | 35.0% | |
| ! | GTTGCCTTTTCCATCATATT+TGG | - | chr4_4:45997-46016 | Msa0662400:CDS | 35.0% |
| ! | TTTGGGATAGAAACAGCTAA+AGG | - | chr4_4:46015-46034 | Msa0662400:CDS | 35.0% |
| AAACAGCTAAAGGTTTCAAG+TGG | - | chr4_4:46025-46044 | Msa0662400:CDS | 35.0% | |
| ! | GTTTCAAGTGGCTTCTTATA+AGG | - | chr4_4:46037-46056 | Msa0662400:CDS | 35.0% |
| ATAAGGCTAAACATGACTTC+AGG | - | chr4_4:46054-46073 | Msa0662400:CDS | 35.0% | |
| AACTAGTAGAGACAAGACAA+TGG | - | chr4_4:46083-46102 | Msa0662400:intron | 35.0% | |
| AGACAAGACAATGGCAAATT+TGG | - | chr4_4:46092-46111 | Msa0662400:intron | 35.0% | |
| GACAAGACAATGGCAAATTT+GGG | - | chr4_4:46093-46112 | Msa0662400:intron | 35.0% | |
| ACATCACTTAGCATTTATGG+TGG | - | chr4_4:46125-46144 | Msa0662400:intron | 35.0% | |
| !!! | GTGGTGTTTTTGCTGATTTT+AGG | - | chr4_4:46144-46163 | Msa0662400:intron | 35.0% |
| !!! | TGCTGATTTTAGGCTTGTTA+TGG | - | chr4_4:46154-46173 | Msa0662400:intron | 35.0% |
| !!! | GCTGATTTTAGGCTTGTTAT+GGG | - | chr4_4:46155-46174 | Msa0662400:intron | 35.0% |
| !!! | CTGATTTTAGGCTTGTTATG+GGG | - | chr4_4:46156-46175 | Msa0662400:intron | 35.0% |
| ATGGTGAAAATGCTTATCTG+TGG | - | chr4_4:46214-46233 | Msa0662400:intron | 35.0% | |
| ! | TGGCTTTTATCCCGATTAAA+TGG | - | chr4_4:46276-46295 | Msa0662400:intron | 35.0% |
| TTATCCCGATTAAATGGACA+TGG | - | chr4_4:46282-46301 | Msa0662400:intron | 35.0% | |
| CGATTAAATGGACATGGTTT+AGG | - | chr4_4:46288-46307 | Msa0662400:intron | 35.0% | |
| !! | GATCAAGAGGTTTGTTGAAT+TGG | - | chr4_4:46310-46329 | Msa0662400:intron | 35.0% |
| TTGTTGAATTGGATGCGATT+TGG | - | chr4_4:46321-46340 | Msa0662400:intron | 35.0% | |
| ACATGAACATGAGATTGAGA+AGG | + | chr4_4:46441-46460 | None:intergenic | 35.0% | |
| ACTCATGCTACTAGAAGAAA+AGG | - | chr4_4:46546-46565 | Msa0662400:intron | 35.0% | |
| GTATAAACATATGCTCTCCA+AGG | + | chr4_4:47132-47151 | None:intergenic | 35.0% | |
| CACGACAATATTACCTTCTA+TGG | + | chr4_4:47245-47264 | None:intergenic | 35.0% | |
| AGATAGGAGAGCAAGAACAT+AGG | + | chr4_4:43674-43693 | None:intergenic | 40.0% | |
| AACAAATCGCAGCTTCATCT+TGG | - | chr4_4:43817-43836 | Msa0662400:exon | 40.0% | |
| TTGTTCAGAGGAGACAGAAT+TGG | + | chr4_4:43848-43867 | None:intergenic | 40.0% | |
| !!! | TCCCCTCTTTTAAGCATTGA+AGG | - | chr4_4:43871-43890 | Msa0662400:CDS | 40.0% |
| !!! | TGGCTGTTTTTGGTATTCTC+GGG | - | chr4_4:44219-44238 | Msa0662400:intron | 40.0% |
| CGGGGTAATATTCTATTCTG+TGG | - | chr4_4:44238-44257 | Msa0662400:intron | 40.0% | |
| TCCATTTGACCATTACTGGT+TGG | - | chr4_4:44313-44332 | Msa0662400:intron | 40.0% | |
| TCCAACCAGTAATGGTCAAA+TGG | + | chr4_4:44317-44336 | None:intergenic | 40.0% | |
| ATCGTAACTCCAACCAGTAA+TGG | + | chr4_4:44325-44344 | None:intergenic | 40.0% | |
| GGAATAAATGCAACTACTGC+AGG | + | chr4_4:44734-44753 | None:intergenic | 40.0% | |
| TAGTCACATGACCAACACTA+GGG | + | chr4_4:45004-45023 | None:intergenic | 40.0% | |
| GGTCAAGGTAAAGAATGGTT+TGG | + | chr4_4:45031-45050 | None:intergenic | 40.0% | |
| AGGAAGGTCAAGGTAAAGAA+TGG | + | chr4_4:45036-45055 | None:intergenic | 40.0% | |
| TAGAGACCATGTTAGAAGGA+AGG | + | chr4_4:45052-45071 | None:intergenic | 40.0% | |
| GGTGCAAAAATTTAGGAGTG+AGG | + | chr4_4:45087-45106 | None:intergenic | 40.0% | |
| !!! | CTAGGTTGGTTCTTTTCTGA+TGG | - | chr4_4:45221-45240 | Msa0662400:intron | 40.0% |
| !! | TTGGTTCTTTTCTGATGGGA+TGG | - | chr4_4:45226-45245 | Msa0662400:intron | 40.0% |
| ! | TCTTTTCTGATGGGATGGTT+TGG | - | chr4_4:45231-45250 | Msa0662400:intron | 40.0% |
| GCACTAACAACTGGTTACTT+AGG | - | chr4_4:45303-45322 | Msa0662400:intron | 40.0% | |
| ATGCTTGAACTCAGTGTTAC+TGG | - | chr4_4:45360-45379 | Msa0662400:intron | 40.0% | |
| ! | TGCTTGAACTCAGTGTTACT+GGG | - | chr4_4:45361-45380 | Msa0662400:intron | 40.0% |
| ! | AACTCAGTGTTACTGGGAAT+TGG | - | chr4_4:45367-45386 | Msa0662400:intron | 40.0% |
| AATTATCGCAGTCTATGCAG+GGG | - | chr4_4:45921-45940 | Msa0662400:intron | 40.0% | |
| AAGACAATGGCAAATTTGGG+AGG | - | chr4_4:46096-46115 | Msa0662400:intron | 40.0% | |
| TTCATTGAACTCAGCGACAA+AGG | + | chr4_4:47091-47110 | None:intergenic | 40.0% | |
| TTGTGTGCCTATTTGGAGAA+TGG | - | chr4_4:47197-47216 | Msa0662400:CDS | 40.0% | |
| AAATGTCAGGTAGCCATAGA+AGG | - | chr4_4:47229-47248 | Msa0662400:CDS | 40.0% | |
| ! | TAGCTGCTACTTGAAAACAC+TGG | + | chr4_4:47355-47374 | None:intergenic | 40.0% |
| GAGCAAGAACATAGGAGGTT+AGG | + | chr4_4:43666-43685 | None:intergenic | 45.0% | |
| TAGGAGAGCAAGAACATAGG+AGG | + | chr4_4:43671-43690 | None:intergenic | 45.0% | |
| CATGCAATGGAGCATGATGT+TGG | - | chr4_4:43790-43809 | Msa0662400:three_prime_UTR | 45.0% | |
| AAGAGGGGACATTTGTTCAG+AGG | + | chr4_4:43860-43879 | None:intergenic | 45.0% | |
| TGACTGTTGTCTTCAGTTGC+AGG | - | chr4_4:44142-44161 | Msa0662400:intron | 45.0% | |
| ! | GAAGCACTATCCAGTAGCTT+TGG | + | chr4_4:44185-44204 | None:intergenic | 45.0% |
| !!! | GGCTGTTTTTGGTATTCTCG+GGG | - | chr4_4:44220-44239 | Msa0662400:intron | 45.0% |
| CTAGTCACATGACCAACACT+AGG | + | chr4_4:45005-45024 | None:intergenic | 45.0% | |
| CCATGTTAGAAGGAAGGTCA+AGG | + | chr4_4:45046-45065 | None:intergenic | 45.0% | |
| CCTTGACCTTCCTTCTAACA+TGG | - | chr4_4:45043-45062 | Msa0662400:CDS | 45.0% | |
| TAGTGCAACAGCCAGATACT+TGG | + | chr4_4:45289-45308 | None:intergenic | 45.0% | |
| ! | AATTGGCTCTTTGTTGCGCT+TGG | - | chr4_4:45384-45403 | Msa0662400:intron | 45.0% |
| ! | GTTGCGCTTGGCTTTCTAAT+AGG | - | chr4_4:45396-45415 | Msa0662400:intron | 45.0% |
| ATGTGTGTGTGTGTAGAGAG+AGG | - | chr4_4:45512-45531 | Msa0662400:intron | 45.0% | |
| CTATGCAGGGGTGAATTGAT+AGG | - | chr4_4:45933-45952 | Msa0662400:intron | 45.0% | |
| !! | GGCTTGTTATGGGGTATTAG+TGG | - | chr4_4:46165-46184 | Msa0662400:intron | 45.0% |
| GCTTGCATTGTTGGACCTAT+TGG | - | chr4_4:46240-46259 | Msa0662400:intron | 45.0% | |
| TTGTTGGACCTATTGGTGTG+TGG | - | chr4_4:46247-46266 | Msa0662400:intron | 45.0% | |
| GACCTATTGGTGTGTGGATA+AGG | - | chr4_4:46253-46272 | Msa0662400:intron | 45.0% | |
| CACCTTATCCACACACCAAT+AGG | + | chr4_4:46258-46277 | None:intergenic | 45.0% | |
| CTATTGGTGTGTGGATAAGG+TGG | - | chr4_4:46256-46275 | Msa0662400:intron | 45.0% | |
| ! | GGACATGGTTTAGGATCAAG+AGG | - | chr4_4:46297-46316 | Msa0662400:intron | 45.0% |
| ! | TGTCTCTGCTGCTTGTATCA+TGG | - | chr4_4:46359-46378 | Msa0662400:intron | 45.0% |
| GGTCTAACTGTGATGTTGAG+TGG | + | chr4_4:46752-46771 | None:intergenic | 45.0% | |
| GATTGTGTCCTCGTTATCGT+GGG | + | chr4_4:46773-46792 | None:intergenic | 45.0% | |
| AGATTGTGTCCTCGTTATCG+TGG | + | chr4_4:46774-46793 | None:intergenic | 45.0% | |
| CTGGCTGTTGCACTAACAAC+TGG | - | chr4_4:45294-45313 | Msa0662400:intron | 50.0% | |
| GGGAGTCTAACAACGTTCAG+CGG | - | chr4_4:45324-45343 | Msa0662400:intron | 50.0% | |
| CTGTGGATCGCTTGCATTGT+TGG | - | chr4_4:46231-46250 | Msa0662400:intron | 50.0% | |
| CAGTTAGACCCACGATAACG+AGG | - | chr4_4:46762-46781 | Msa0662400:intron | 50.0% | |
| AGGCATACAGTTTGGCCTGT+TGG | - | chr4_4:47044-47063 | Msa0662400:intron | 50.0% | |
| GGCATACAGTTTGGCCTGTT+GGG | - | chr4_4:47045-47064 | Msa0662400:intron | 50.0% | |
| CAGTACTCAAACAGCCCAAC+AGG | + | chr4_4:47062-47081 | None:intergenic | 50.0% | |
| GTCTAACAACGTTCAGCGGC+TGG | - | chr4_4:45328-45347 | Msa0662400:intron | 55.0% | |
| TGAGAGAAAGCGAGCACCCT+TGG | - | chr4_4:47112-47131 | Msa0662400:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 43634 | 47421 | 43634 | ID=Msa0662400;Name=Msa0662400 |
| chr4_4 | mRNA | 43634 | 47421 | 43634 | ID=Msa0662400-mRNA-1;Parent=Msa0662400;Name=Msa0662400-mRNA-1;_AED=0.25;_eAED=0.25;_QI=162|1|1|1|0.8|0.83|6|191|379 |
| chr4_4 | exon | 43634 | 44043 | 43634 | ID=Msa0662400-mRNA-1:exon:19;Parent=Msa0662400-mRNA-1 |
| chr4_4 | exon | 44648 | 45069 | 44648 | ID=Msa0662400-mRNA-1:exon:18;Parent=Msa0662400-mRNA-1 |
| chr4_4 | exon | 45638 | 45830 | 45638 | ID=Msa0662400-mRNA-1:exon:17;Parent=Msa0662400-mRNA-1 |
| chr4_4 | exon | 45991 | 46089 | 45991 | ID=Msa0662400-mRNA-1:exon:16;Parent=Msa0662400-mRNA-1 |
| chr4_4 | exon | 46814 | 46897 | 46814 | ID=Msa0662400-mRNA-1:exon:15;Parent=Msa0662400-mRNA-1 |
| chr4_4 | exon | 47137 | 47421 | 47137 | ID=Msa0662400-mRNA-1:exon:14;Parent=Msa0662400-mRNA-1 |
| chr4_4 | five_prime_UTR | 47260 | 47421 | 47260 | ID=Msa0662400-mRNA-1:five_prime_utr;Parent=Msa0662400-mRNA-1 |
| chr4_4 | CDS | 47137 | 47259 | 47137 | ID=Msa0662400-mRNA-1:cds;Parent=Msa0662400-mRNA-1 |
| chr4_4 | CDS | 46814 | 46897 | 46814 | ID=Msa0662400-mRNA-1:cds;Parent=Msa0662400-mRNA-1 |
| chr4_4 | CDS | 45991 | 46089 | 45991 | ID=Msa0662400-mRNA-1:cds;Parent=Msa0662400-mRNA-1 |
| chr4_4 | CDS | 45638 | 45830 | 45638 | ID=Msa0662400-mRNA-1:cds;Parent=Msa0662400-mRNA-1 |
| chr4_4 | CDS | 44648 | 45069 | 44648 | ID=Msa0662400-mRNA-1:cds;Parent=Msa0662400-mRNA-1 |
| chr4_4 | CDS | 43825 | 44043 | 43825 | ID=Msa0662400-mRNA-1:cds;Parent=Msa0662400-mRNA-1 |
| chr4_4 | three_prime_UTR | 43634 | 43824 | 43634 | ID=Msa0662400-mRNA-1:three_prime_utr;Parent=Msa0662400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
