AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1365210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1365210 MtrunA17_Chr4g0072111 94.444 198 9 2 1 198 1 196 3.38e-107 305
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1365210 AT5G57345.1 58.673 196 63 6 5 198 9 188 5.31e-49 158

Find 70 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGTAGTTACGTACCTTAA+TGG 0.268837 tig0018212:-21594 None:intergenic
TGTTTAATATAGATGTTTAA+AGG 0.274646 tig0018212:+23703 Msa1365210:three_prime_UTR
ACATATGTGTGACCAATATT+TGG 0.311499 tig0018212:+23739 Msa1365210:three_prime_UTR
GCCATACTATGGTGGTGGTT+GGG 0.312006 tig0018212:+23452 Msa1365210:CDS
AACAATCTTCAACTCCATTA+AGG 0.317786 tig0018212:+21580 Msa1365210:CDS
TGGTATTTGAGGGAGATAGA+AGG 0.318024 tig0018212:+21344 Msa1365210:five_prime_UTR
CCTGGTGCAAAGAAAGAAAA+TGG 0.328053 tig0018212:-23483 None:intergenic
ACCAATTCTACCACCAGTTT+TGG 0.337468 tig0018212:-21779 None:intergenic
GAATTGTTATTGTTGATTCT+TGG 0.352408 tig0018212:-21841 None:intergenic
CCCCAACCACCACCATAGTA+TGG 0.355295 tig0018212:-23453 None:intergenic
AAGAAGAATGAGAACAAGTT+AGG 0.368246 tig0018212:+21688 Msa1365210:CDS
TGCAGTTGTGAGGAAATTCT+TGG 0.380171 tig0018212:+23578 Msa1365210:CDS
CCATACTATGGTGGTGGTTG+GGG 0.384922 tig0018212:+23453 Msa1365210:CDS
CCTCCACTAGGTGGTGGATA+CGG 0.391006 tig0018212:+23417 Msa1365210:CDS
TGCCATACTATGGTGGTGGT+TGG 0.397465 tig0018212:+23451 Msa1365210:CDS
GATGATGATTACTAGCTTGT+TGG 0.412958 tig0018212:+23624 Msa1365210:exon
TCCTGCTGCTCCTAAAAGTT+GGG 0.413791 tig0018212:-21491 None:intergenic
TACGGTGGTGTGCCATACTA+TGG 0.417463 tig0018212:+23441 Msa1365210:CDS
GAATCAACAATAACAATTCC+AGG 0.432239 tig0018212:+21845 Msa1365210:CDS
TATCTCAAAAGACCAAATAT+TGG 0.436098 tig0018212:-23751 None:intergenic
AATATAGATGTTTAAAGGAA+TGG 0.446403 tig0018212:+23708 Msa1365210:three_prime_UTR
GATGCATCAGCTGCCAAAAC+TGG 0.451635 tig0018212:+21766 Msa1365210:CDS
AGGAAAAGAGTTGGTATTTG+AGG 0.456509 tig0018212:+21333 Msa1365210:five_prime_UTR
GTCCTGCTGCTCCTAAAAGT+TGG 0.462508 tig0018212:-21492 None:intergenic
GCCAAAACTGGTGGTAGAAT+TGG 0.463723 tig0018212:+21778 Msa1365210:CDS
CCACGGGTGGCGCCTCCACT+AGG 0.472801 tig0018212:+23405 Msa1365210:CDS
GGAAAAGAGTTGGTATTTGA+GGG 0.474287 tig0018212:+21334 Msa1365210:five_prime_UTR
ACTATGGTGGTGGTTGGGGA+TGG 0.480924 tig0018212:+23457 Msa1365210:CDS
CTCCACTAGGTGGTGGATAC+GGG 0.491592 tig0018212:+23418 Msa1365210:CDS
TTGTTGATTCTTGGTGAGGA+AGG 0.491949 tig0018212:-21832 None:intergenic
GCTGCTGGTGTGTTAACGTT+TGG 0.494174 tig0018212:+21733 Msa1365210:CDS
GCAATGATTGCAGTGGCTGC+TGG 0.497359 tig0018212:+21718 Msa1365210:CDS
CCGAGTGTTGCAGTAGGCGT+TGG 0.513639 tig0018212:+23507 Msa1365210:CDS
GTTGCAGTAGGCGTTGGAGG+TGG 0.519811 tig0018212:+23513 Msa1365210:CDS
AGTGTTGCAGTAGGCGTTGG+AGG 0.520000 tig0018212:+23510 Msa1365210:CDS
AAAGTTGGGTTAAGAAGTGT+TGG 0.530509 tig0018212:-21477 None:intergenic
GTGGCGCCTCCACTAGGTGG+TGG 0.533635 tig0018212:+23411 Msa1365210:CDS
AATTAAACTTATTTGTGACA+TGG 0.533737 tig0018212:+21192 Msa1365210:five_prime_UTR
GCAGTTGTGAGGAAATTCTT+GGG 0.538440 tig0018212:+23579 Msa1365210:CDS
CTAGGTGGTGGATACGGGTA+CGG 0.541215 tig0018212:+23423 Msa1365210:CDS
GAAGTGTTGGTGAAGAGATG+AGG 0.545411 tig0018212:-21464 None:intergenic
TGTTGATTCTTGGTGAGGAA+GGG 0.549367 tig0018212:-21831 None:intergenic
CCGTGGATTTATATAGATGT+TGG 0.558960 tig0018212:-23388 None:intergenic
CCTACTGCAACACTCGGACC+TGG 0.565214 tig0018212:-23501 None:intergenic
GCGAGGAGCGGATGATCTGA+AGG 0.565349 tig0018212:-21809 None:intergenic
GTGCTGCTGCTGCAGTTGTG+AGG 0.568041 tig0018212:+23568 Msa1365210:CDS
CACGTGGCAACTCAAGAACC+AGG 0.584030 tig0018212:+21313 Msa1365210:five_prime_UTR
CCAGGTCCGAGTGTTGCAGT+AGG 0.586325 tig0018212:+23501 Msa1365210:CDS
ATTCTTGGTGAGGAAGGGCG+AGG 0.590888 tig0018212:-21826 None:intergenic
TCAAGAACCAGGAAAAGAGT+TGG 0.594806 tig0018212:+21324 Msa1365210:five_prime_UTR
AAAACTGGTGGTAGAATTGG+TGG 0.598132 tig0018212:+21781 Msa1365210:CDS
GAGGAAGCTTTGCTGTGACA+AGG 0.599879 tig0018212:-21445 None:intergenic
TGTTGTTGATCATCGTGTTG+TGG 0.603921 tig0018212:-21558 None:intergenic
CCAACGCCTACTGCAACACT+CGG 0.613463 tig0018212:-23507 None:intergenic
GTTATTGTTGATTCTTGGTG+AGG 0.615397 tig0018212:-21836 None:intergenic
CCAACATCTATATAAATCCA+CGG 0.616856 tig0018212:+23388 Msa1365210:CDS
TGGTGAGGAAGGGCGAGGAG+CGG 0.629460 tig0018212:-21821 None:intergenic
CAACATCTATATAAATCCAC+GGG 0.636919 tig0018212:+23389 Msa1365210:CDS
GGTGTGCCATACTATGGTGG+TGG 0.643399 tig0018212:+23447 Msa1365210:CDS
CGGGTGGCGCCTCCACTAGG+TGG 0.653412 tig0018212:+23408 Msa1365210:CDS
AAAGTTAGCAATGATTGCAG+TGG 0.664147 tig0018212:+21711 Msa1365210:CDS
CATCTATATAAATCCACGGG+TGG 0.671598 tig0018212:+23392 Msa1365210:CDS
GGTGGTGGATACGGGTACGG+TGG 0.672411 tig0018212:+23426 Msa1365210:CDS
GTTGTGAGGAAATTCTTGGG+AGG 0.683288 tig0018212:+23582 Msa1365210:CDS
TACCCGTATCCACCACCTAG+TGG 0.684635 tig0018212:-23420 None:intergenic
CAGCAGGACGAGGAAGACTG+TGG 0.702489 tig0018212:+21506 Msa1365210:CDS
GCATCAGCTGCCAAAACTGG+TGG 0.706688 tig0018212:+21769 Msa1365210:CDS
AAAATGGTAATTGTGGCACG+TGG 0.715975 tig0018212:+21297 Msa1365210:five_prime_UTR
CCGTATCCACCACCTAGTGG+AGG 0.722573 tig0018212:-23417 None:intergenic
GGTGGTGTGCCATACTATGG+TGG 0.778885 tig0018212:+23444 Msa1365210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTAACTATTATATATAAAT+AGG + tig0018212:21665-21684 Msa1365210:intron 10.0%
!! AAAATAGAAACAAAAAAAAT+TGG - tig0018212:23029-23048 None:intergenic 10.0%
!! TAGCAAAAATAAAAACAAAA+TGG + tig0018212:21281-21300 Msa1365210:five_prime_UTR 15.0%
!! TGATTATACTATATACTTAT+AGG + tig0018212:21925-21944 Msa1365210:intron 15.0%
!! TGTTTAATATAGATGTTTAA+AGG + tig0018212:23703-23722 Msa1365210:three_prime_UTR 15.0%
!! AATTAAACTTATTTGTGACA+TGG + tig0018212:21192-21211 Msa1365210:five_prime_UTR 20.0%
!! TAAAAACAAAATGGTAATTG+TGG + tig0018212:21290-21309 Msa1365210:five_prime_UTR 20.0%
!! ATAAACAAATAAGCAAAAAC+AGG + tig0018212:21370-21389 Msa1365210:five_prime_UTR 20.0%
!! AAGGAAAAATAAATGTTTCT+AGG + tig0018212:21880-21899 Msa1365210:intron 20.0%
!! TACAATTATCAACAAATACA+AGG - tig0018212:22186-22205 None:intergenic 20.0%
!!! TAGTTGTATTTTTCTTCTTT+GGG + tig0018212:22293-22312 Msa1365210:intron 20.0%
!!! TTCATTTTTGTTAGTTGTTT+AGG + tig0018212:22355-22374 Msa1365210:intron 20.0%
!!! TTTAGTCTTATTCTGAAAAT+AGG + tig0018212:22993-23012 Msa1365210:intron 20.0%
!!! TATTTTTATACAGACAATGT+TGG + tig0018212:23043-23062 Msa1365210:intron 20.0%
!! AATATGATCTCTAATGATAT+AGG - tig0018212:23204-23223 None:intergenic 20.0%
!! AATGAAATCTCTTTCATAAT+TGG + tig0018212:23230-23249 Msa1365210:intron 20.0%
!! AATATAGATGTTTAAAGGAA+TGG + tig0018212:23708-23727 Msa1365210:three_prime_UTR 20.0%
!! AATGTTTTTCCATCAGTTTT+TGG - tig0018212:21137-21156 None:intergenic 25.0%
!!! ATTTTTGTGTTGATAAAGCT+TGG - tig0018212:21175-21194 None:intergenic 25.0%
!! TTTGCTTTGTTATATTTGCA+TGG + tig0018212:21640-21659 Msa1365210:intron 25.0%
!!! GAATTGTTATTGTTGATTCT+TGG - tig0018212:21844-21863 None:intergenic 25.0%
! TAATACTACCTAGAGAAAAT+AGG - tig0018212:21994-22013 None:intergenic 25.0%
! AGTTTAATTATGATACCTAC+AGG - tig0018212:22146-22165 None:intergenic 25.0%
! TGTAGGTATCATAATTAAAC+TGG + tig0018212:22145-22164 Msa1365210:intron 25.0%
!! GTAGTTGTATTTTTCTTCTT+TGG + tig0018212:22292-22311 Msa1365210:intron 25.0%
! TCATGTTTACGATATTAGTT+GGG + tig0018212:22415-22434 Msa1365210:intron 25.0%
! TTGTACATTTGGTTATACTT+CGG + tig0018212:22454-22473 Msa1365210:intron 25.0%
! ACTAAGGAGTTTATAAATGA+TGG - tig0018212:22590-22609 None:intergenic 25.0%
! AAAAAAAAGAAAGCCTCATT+TGG - tig0018212:22670-22689 None:intergenic 25.0%
! TGACAAACAGGTAAATAAAA+AGG - tig0018212:22693-22712 None:intergenic 25.0%
!!! TTAGCGCTTTCATTTTTTTT+AGG + tig0018212:22786-22805 Msa1365210:intron 25.0%
!!! TAGCGCTTTCATTTTTTTTA+GGG + tig0018212:22787-22806 Msa1365210:intron 25.0%
! AAATCTCTTTCATAATTGGA+AGG + tig0018212:23234-23253 Msa1365210:intron 25.0%
! TATCTCAAAAGACCAAATAT+TGG - tig0018212:23754-23773 None:intergenic 25.0%
!! GTGTGAATACATTTTTCTAA+TGG + tig0018212:23812-23831 Msa1365210:three_prime_UTR 25.0%
! AAGGAACACATTTTTGATGT+CGG - tig0018212:21429-21448 None:intergenic 30.0%
AACAATCTTCAACTCCATTA+AGG + tig0018212:21580-21599 Msa1365210:CDS 30.0%
AAGAAGAATGAGAACAAGTT+AGG + tig0018212:21688-21707 Msa1365210:CDS 30.0%
GAATCAACAATAACAATTCC+AGG + tig0018212:21845-21864 Msa1365210:CDS 30.0%
TTCCAGGTATCTAACAAAAA+AGG + tig0018212:21861-21880 Msa1365210:intron 30.0%
!!! TTCCTTTTTTGTTAGATACC+TGG - tig0018212:21866-21885 None:intergenic 30.0%
CTAGAGAAAATAGGTTAGAA+TGG - tig0018212:21985-22004 None:intergenic 30.0%
! CATTCTAACCTATTTTCTCT+AGG + tig0018212:21983-22002 Msa1365210:intron 30.0%
GAATTCCAAAATTTGCATCA+AGG - tig0018212:22056-22075 None:intergenic 30.0%
CTAACAAAAATGAAGACTTG+TGG - tig0018212:22349-22368 None:intergenic 30.0%
TGTTTGAACTTGAGTATTAG+AGG + tig0018212:22389-22408 Msa1365210:intron 30.0%
GTTTGAACTTGAGTATTAGA+GGG + tig0018212:22390-22409 Msa1365210:intron 30.0%
CAACTAATATCGTAAACATG+AGG - tig0018212:22416-22435 None:intergenic 30.0%
CTCATGTTTACGATATTAGT+TGG + tig0018212:22414-22433 Msa1365210:intron 30.0%
GGTTAAAAAGTTCGAACAAA+TGG + tig0018212:22553-22572 Msa1365210:intron 30.0%
! CTGTTTGTCACTTAGATATT+CGG + tig0018212:22703-22722 Msa1365210:intron 30.0%
!!! GATATTCGGTTTTTTCTTCT+AGG + tig0018212:22717-22736 Msa1365210:intron 30.0%
!! TGAAAGCGCTAAAATTTGAA+AGG - tig0018212:22778-22797 None:intergenic 30.0%
! GATATATTTCTACACTCCAT+TGG - tig0018212:22841-22860 None:intergenic 30.0%
GTAGAAATATATCTGTCAGT+TGG + tig0018212:22848-22867 Msa1365210:intron 30.0%
AGTATGCGTTAGAAATTAAG+AGG - tig0018212:22959-22978 None:intergenic 30.0%
CCTTAAGTATATATCTCAGT+TGG - tig0018212:23151-23170 None:intergenic 30.0%
CCAACTGAGATATATACTTA+AGG + tig0018212:23148-23167 Msa1365210:intron 30.0%
CCAACATCTATATAAATCCA+CGG + tig0018212:23388-23407 Msa1365210:CDS 30.0%
CAACATCTATATAAATCCAC+GGG + tig0018212:23389-23408 Msa1365210:CDS 30.0%
!!! CTGCTTCTGTTTATGTTTTT+TGG + tig0018212:23546-23565 Msa1365210:CDS 30.0%
ACATATGTGTGACCAATATT+TGG + tig0018212:23739-23758 Msa1365210:three_prime_UTR 30.0%
! ATTTTTCTAATGGTGTCTCA+GGG + tig0018212:23822-23841 Msa1365210:three_prime_UTR 30.0%
! TCAAATACCAACTCTTTTCC+TGG - tig0018212:21334-21353 None:intergenic 35.0%
!! AGGAAAAGAGTTGGTATTTG+AGG + tig0018212:21333-21352 Msa1365210:five_prime_UTR 35.0%
!! GGAAAAGAGTTGGTATTTGA+GGG + tig0018212:21334-21353 Msa1365210:five_prime_UTR 35.0%
! AAAGTTGGGTTAAGAAGTGT+TGG - tig0018212:21480-21499 None:intergenic 35.0%
! CACTTCTTAACCCAACTTTT+AGG + tig0018212:21481-21500 Msa1365210:CDS 35.0%
GATGTAGTTACGTACCTTAA+TGG - tig0018212:21597-21616 None:intergenic 35.0%
AAAGTTAGCAATGATTGCAG+TGG + tig0018212:21711-21730 Msa1365210:CDS 35.0%
!! GTTATTGTTGATTCTTGGTG+AGG - tig0018212:21839-21858 None:intergenic 35.0%
TTCCAAAATTTGCATCAAGG+AGG - tig0018212:22053-22072 None:intergenic 35.0%
TGCAACTACAAACTATGCTT+AGG - tig0018212:22078-22097 None:intergenic 35.0%
ACAACAACTATAGCGACAAA+AGG - tig0018212:22214-22233 None:intergenic 35.0%
ACTAAAGAGGGTTGTACATT+TGG + tig0018212:22443-22462 Msa1365210:intron 35.0%
CAATGTTACCACACTCTATT+GGG - tig0018212:22497-22516 None:intergenic 35.0%
ACAATGTTACCACACTCTAT+TGG - tig0018212:22498-22517 None:intergenic 35.0%
GGTGAAAACAAGGAAAACTA+AGG - tig0018212:22606-22625 None:intergenic 35.0%
CGAAATTAAGAAGTCTCACT+CGG - tig0018212:22627-22646 None:intergenic 35.0%
CGAATATCTAAGTGACAAAC+AGG - tig0018212:22705-22724 None:intergenic 35.0%
!! AGTCCATTGGTTTGAACTAT+TGG - tig0018212:22894-22913 None:intergenic 35.0%
!! ATGGAGAATTTTGAGTCCAT+TGG - tig0018212:22907-22926 None:intergenic 35.0%
!!! ACATGGAAGCAGTTTTAAGT+AGG - tig0018212:23117-23136 None:intergenic 35.0%
! ACCTATCTGTCTCATTTTGT+TGG + tig0018212:23324-23343 Msa1365210:intron 35.0%
TCCAACAAAATGAGACAGAT+AGG - tig0018212:23328-23347 None:intergenic 35.0%
CCGTGGATTTATATAGATGT+TGG - tig0018212:23391-23410 None:intergenic 35.0%
! GATGATGATTACTAGCTTGT+TGG + tig0018212:23624-23643 Msa1365210:exon 35.0%
! CATTTTTCTAATGGTGTCTC+AGG + tig0018212:23821-23840 Msa1365210:three_prime_UTR 35.0%
AAAATGGTAATTGTGGCACG+TGG + tig0018212:21297-21316 Msa1365210:five_prime_UTR 40.0%
TCAAGAACCAGGAAAAGAGT+TGG + tig0018212:21324-21343 Msa1365210:five_prime_UTR 40.0%
TGGTATTTGAGGGAGATAGA+AGG + tig0018212:21344-21363 Msa1365210:five_prime_UTR 40.0%
TGTTGTTGATCATCGTGTTG+TGG - tig0018212:21561-21580 None:intergenic 40.0%
! ACCAATTCTACCACCAGTTT+TGG - tig0018212:21782-21801 None:intergenic 40.0%
AAAACTGGTGGTAGAATTGG+TGG + tig0018212:21781-21800 Msa1365210:CDS 40.0%
!! TGTTGATTCTTGGTGAGGAA+GGG - tig0018212:21834-21853 None:intergenic 40.0%
!! TTGTTGATTCTTGGTGAGGA+AGG - tig0018212:21835-21854 None:intergenic 40.0%
! CTCCTCCTTGATGCAAATTT+TGG + tig0018212:22048-22067 Msa1365210:intron 40.0%
ATACCTACAGGCATCAATGT+CGG - tig0018212:22134-22153 None:intergenic 40.0%
!! GTTGTTGTTTGTCTCCTTGT+CGG + tig0018212:22226-22245 Msa1365210:intron 40.0%
! TGTACAACCCTCTTTAGTTC+AGG - tig0018212:22441-22460 None:intergenic 40.0%
GTGGTAACATTGTGAGTAGT+TGG + tig0018212:22505-22524 Msa1365210:intron 40.0%
! TTGGTGTTCTTAAGTGTAGC+AGG + tig0018212:22524-22543 Msa1365210:intron 40.0%
! TGTTCGAACTTTTTAACCGC+TGG - tig0018212:22551-22570 None:intergenic 40.0%
AAAGCCTCATTTGGACTTGA+GGG - tig0018212:22661-22680 None:intergenic 40.0%
! TTTTCTTCTAGGCTTGTGAG+AGG + tig0018212:22728-22747 Msa1365210:intron 40.0%
! CGCTAAAATTTGAAAGGTGC+AGG - tig0018212:22772-22791 None:intergenic 40.0%
!! TTTTTAGGGACCAGTGAATG+AGG + tig0018212:22801-22820 Msa1365210:intron 40.0%
GGTCCAATAGTTCAAACCAA+TGG + tig0018212:22888-22907 Msa1365210:intron 40.0%
GTGGGAACATGGAAAAGTAA+TGG - tig0018212:22926-22945 None:intergenic 40.0%
!! AGTTGGTGAGATAAGAGACA+TGG - tig0018212:23134-23153 None:intergenic 40.0%
TTTCGTATCTGTATGTCGAC+AGG + tig0018212:23364-23383 Msa1365210:intron 40.0%
CATCTATATAAATCCACGGG+TGG + tig0018212:23392-23411 Msa1365210:CDS 40.0%
CCTGGTGCAAAGAAAGAAAA+TGG - tig0018212:23486-23505 None:intergenic 40.0%
! CCATTTTCTTTCTTTGCACC+AGG + tig0018212:23483-23502 Msa1365210:CDS 40.0%
TGCAGTTGTGAGGAAATTCT+TGG + tig0018212:23578-23597 Msa1365210:CDS 40.0%
GCAGTTGTGAGGAAATTCTT+GGG + tig0018212:23579-23598 Msa1365210:CDS 40.0%
!! GAAGTGTTGGTGAAGAGATG+AGG - tig0018212:21467-21486 None:intergenic 45.0%
TCCTGCTGCTCCTAAAAGTT+GGG - tig0018212:21494-21513 None:intergenic 45.0%
GCCAAAACTGGTGGTAGAAT+TGG + tig0018212:21778-21797 Msa1365210:CDS 45.0%
TGAAGACTTCTGACCGTAAC+TGG + tig0018212:22255-22274 Msa1365210:intron 45.0%
GAAGACTTCTGACCGTAACT+GGG + tig0018212:22256-22275 Msa1365210:intron 45.0%
AGAGCAAGAAGACCCAGTTA+CGG - tig0018212:22271-22290 None:intergenic 45.0%
TAGTTGGGCCTGAACTAAAG+AGG + tig0018212:22430-22449 Msa1365210:intron 45.0%
AGTTGGGCCTGAACTAAAGA+GGG + tig0018212:22431-22450 Msa1365210:intron 45.0%
TCCAAAGACCCAATAGAGTG+TGG + tig0018212:22486-22505 Msa1365210:intron 45.0%
ACCACACTCTATTGGGTCTT+TGG - tig0018212:22490-22509 None:intergenic 45.0%
! AGTCTCACTCGGTGAAAACA+AGG - tig0018212:22616-22635 None:intergenic 45.0%
AAGCCTCATTTGGACTTGAG+GGG - tig0018212:22660-22679 None:intergenic 45.0%
GAAAGCCTCATTTGGACTTG+AGG - tig0018212:22662-22681 None:intergenic 45.0%
!! TTTCTACACTCCATTGGCTC+TGG - tig0018212:22835-22854 None:intergenic 45.0%
CAGTTGGCATTCTCAAGAGT+AGG + tig0018212:22864-22883 Msa1365210:intron 45.0%
TTGGCATTCTCAAGAGTAGG+AGG + tig0018212:22867-22886 Msa1365210:intron 45.0%
GTTGTGAGGAAATTCTTGGG+AGG + tig0018212:23582-23601 Msa1365210:CDS 45.0%
! GAGGAAGCTTTGCTGTGACA+AGG - tig0018212:21448-21467 None:intergenic 50.0%
!! ACCCAACTTTTAGGAGCAGC+AGG + tig0018212:21490-21509 Msa1365210:CDS 50.0%
GTCCTGCTGCTCCTAAAAGT+TGG - tig0018212:21495-21514 None:intergenic 50.0%
GCTGCTGGTGTGTTAACGTT+TGG + tig0018212:21733-21752 Msa1365210:CDS 50.0%
GATGCATCAGCTGCCAAAAC+TGG + tig0018212:21766-21785 Msa1365210:CDS 50.0%
! TTTGCATCAAGGAGGAGCGT+TGG - tig0018212:22045-22064 None:intergenic 50.0%
!! GTTTGTCTCCTTGTCGGCTT+TGG + tig0018212:22232-22251 Msa1365210:intron 50.0%
AGTCTTCACCAAAGCCGACA+AGG - tig0018212:22243-22262 None:intergenic 50.0%
CTTAAGTGTAGCAGGTCCAG+CGG + tig0018212:22532-22551 Msa1365210:intron 50.0%
AGCCTCATTTGGACTTGAGG+GGG - tig0018212:22659-22678 None:intergenic 50.0%
GGTATCAGAGCCTCATTCAC+TGG - tig0018212:22814-22833 None:intergenic 50.0%
TTTCCATGTTCCCACACGTG+TGG + tig0018212:22931-22950 Msa1365210:intron 50.0%
TTCCATGTTCCCACACGTGT+GGG + tig0018212:22932-22951 Msa1365210:intron 50.0%
TTAAGAGGTCCCACACGTGT+GGG - tig0018212:22944-22963 None:intergenic 50.0%
ATTAAGAGGTCCCACACGTG+TGG - tig0018212:22945-22964 None:intergenic 50.0%
TACGGTGGTGTGCCATACTA+TGG + tig0018212:23441-23460 Msa1365210:CDS 50.0%
!! TGCCATACTATGGTGGTGGT+TGG + tig0018212:23451-23470 Msa1365210:CDS 50.0%
!! GCCATACTATGGTGGTGGTT+GGG + tig0018212:23452-23471 Msa1365210:CDS 50.0%
!! CCATACTATGGTGGTGGTTG+GGG + tig0018212:23453-23472 Msa1365210:CDS 50.0%
CACGTGGCAACTCAAGAACC+AGG + tig0018212:21313-21332 Msa1365210:five_prime_UTR 55.0%
!! CTTTTAGGAGCAGCAGGACG+AGG + tig0018212:21496-21515 Msa1365210:CDS 55.0%
GCAATGATTGCAGTGGCTGC+TGG + tig0018212:21718-21737 Msa1365210:CDS 55.0%
GCATCAGCTGCCAAAACTGG+TGG + tig0018212:21769-21788 Msa1365210:CDS 55.0%
ATTCTTGGTGAGGAAGGGCG+AGG - tig0018212:21829-21848 None:intergenic 55.0%
CCTACAGGCATCAATGTCGG+AGG - tig0018212:22131-22150 None:intergenic 55.0%
CCTCCGACATTGATGCCTGT+AGG + tig0018212:22128-22147 Msa1365210:intron 55.0%
TCCCCCCTCAAGTCCAAATG+AGG + tig0018212:22654-22673 Msa1365210:intron 55.0%
GCCTCATTTGGACTTGAGGG+GGG - tig0018212:22658-22677 None:intergenic 55.0%
! GGCTCTGATACCAGAGCCAA+TGG + tig0018212:22822-22841 Msa1365210:intron 55.0%
!! CCTCCACTAGGTGGTGGATA+CGG + tig0018212:23417-23436 Msa1365210:CDS 55.0%
!! CTCCACTAGGTGGTGGATAC+GGG + tig0018212:23418-23437 Msa1365210:CDS 55.0%
TACCCGTATCCACCACCTAG+TGG - tig0018212:23423-23442 None:intergenic 55.0%
!! CTAGGTGGTGGATACGGGTA+CGG + tig0018212:23423-23442 Msa1365210:CDS 55.0%
GGTGGTGTGCCATACTATGG+TGG + tig0018212:23444-23463 Msa1365210:CDS 55.0%
GGTGTGCCATACTATGGTGG+TGG + tig0018212:23447-23466 Msa1365210:CDS 55.0%
CCCCAACCACCACCATAGTA+TGG - tig0018212:23456-23475 None:intergenic 55.0%
!! ACTATGGTGGTGGTTGGGGA+TGG + tig0018212:23457-23476 Msa1365210:CDS 55.0%
CCAACGCCTACTGCAACACT+CGG - tig0018212:23510-23529 None:intergenic 55.0%
!! AGTGTTGCAGTAGGCGTTGG+AGG + tig0018212:23510-23529 Msa1365210:CDS 55.0%
CAGCAGGACGAGGAAGACTG+TGG + tig0018212:21506-21525 Msa1365210:CDS 60.0%
GCGAGGAGCGGATGATCTGA+AGG - tig0018212:21812-21831 None:intergenic 60.0%
! GAAAGGTGCAGGTAGCCGCA+CGG - tig0018212:22761-22780 None:intergenic 60.0%
GTCCCACACGTGTGGGAACA+TGG - tig0018212:22937-22956 None:intergenic 60.0%
CCGTATCCACCACCTAGTGG+AGG - tig0018212:23420-23439 None:intergenic 60.0%
CCTACTGCAACACTCGGACC+TGG - tig0018212:23504-23523 None:intergenic 60.0%
! CCAGGTCCGAGTGTTGCAGT+AGG + tig0018212:23501-23520 Msa1365210:CDS 60.0%
! CCGAGTGTTGCAGTAGGCGT+TGG + tig0018212:23507-23526 Msa1365210:CDS 60.0%
!! GTTGCAGTAGGCGTTGGAGG+TGG + tig0018212:23513-23532 Msa1365210:CDS 60.0%
! GTGCTGCTGCTGCAGTTGTG+AGG + tig0018212:23568-23587 Msa1365210:CDS 60.0%
TGGTGAGGAAGGGCGAGGAG+CGG - tig0018212:21824-21843 None:intergenic 65.0%
CTAGGCTTGTGAGAGGCCCC+TGG + tig0018212:22735-22754 Msa1365210:intron 65.0%
!! GGTGGTGGATACGGGTACGG+TGG + tig0018212:23426-23445 Msa1365210:CDS 65.0%
TGCAGGTAGCCGCACGGCCA+GGG - tig0018212:22755-22774 None:intergenic 70.0%
GTGGCGCCTCCACTAGGTGG+TGG + tig0018212:23411-23430 Msa1365210:CDS 70.0%
GTGAGAGGCCCCTGGCCGTG+CGG + tig0018212:22743-22762 Msa1365210:intron 75.0%
GCAGGTAGCCGCACGGCCAG+GGG - tig0018212:22754-22773 None:intergenic 75.0%
GTGCAGGTAGCCGCACGGCC+AGG - tig0018212:22756-22775 None:intergenic 75.0%
!! CCTAGTGGAGGCGCCACCCG+TGG - tig0018212:23408-23427 None:intergenic 75.0%
CCACGGGTGGCGCCTCCACT+AGG + tig0018212:23405-23424 Msa1365210:CDS 75.0%
CGGGTGGCGCCTCCACTAGG+TGG + tig0018212:23408-23427 Msa1365210:CDS 75.0%
Chromosome Type Strat End Strand Name
tig0018212 gene 21127 23920 21127 ID=Msa1365210;Name=Msa1365210
tig0018212 mRNA 21127 23920 21127 ID=Msa1365210-mRNA-1;Parent=Msa1365210;Name=Msa1365210-mRNA-1;_AED=0.01;_eAED=0.01;_QI=311|1|1|1|1|1|3|282|198
tig0018212 exon 21127 21601 21127 ID=Msa1365210-mRNA-1:exon:14418;Parent=Msa1365210-mRNA-1
tig0018212 exon 21687 21866 21687 ID=Msa1365210-mRNA-1:exon:14419;Parent=Msa1365210-mRNA-1
tig0018212 exon 23386 23920 23386 ID=Msa1365210-mRNA-1:exon:14420;Parent=Msa1365210-mRNA-1
tig0018212 five_prime_UTR 21127 21437 21127 ID=Msa1365210-mRNA-1:five_prime_utr;Parent=Msa1365210-mRNA-1
tig0018212 CDS 21438 21601 21438 ID=Msa1365210-mRNA-1:cds;Parent=Msa1365210-mRNA-1
tig0018212 CDS 21687 21866 21687 ID=Msa1365210-mRNA-1:cds;Parent=Msa1365210-mRNA-1
tig0018212 CDS 23386 23638 23386 ID=Msa1365210-mRNA-1:cds;Parent=Msa1365210-mRNA-1
tig0018212 three_prime_UTR 23639 23920 23639 ID=Msa1365210-mRNA-1:three_prime_utr;Parent=Msa1365210-mRNA-1
Gene Sequence

>Msa1365210

ATGTGTTCCTTGTCACAGCAAAGCTTCCTCATCTCTTCACCAACACTTCTTAACCCAACTTTTAGGAGCAGCAGGACGAGGAAGACTGTGGTTGTTGTCTACTGCAGTACTTGTTCACAGCCACAACACGATGATCAACAACAACAATCTTCAACTCCATTAAGGAAGAAGAATGAGAACAAGTTAGGAAAGTTAGCAATGATTGCAGTGGCTGCTGGTGTGTTAACGTTTGGATCAGTTCATGATGCATCAGCTGCCAAAACTGGTGGTAGAATTGGTGGTCAGTCCTTCAGATCATCCGCTCCTCGCCCTTCCTCACCAAGAATCAACAATAACAATTCCAGGACCAACATCTATATAAATCCACGGGTGGCGCCTCCACTAGGTGGTGGATACGGGTACGGTGGTGTGCCATACTATGGTGGTGGTTGGGGATGGTCTCCATTTTCTTTCTTTGCACCAGGTCCGAGTGTTGCAGTAGGCGTTGGAGGTGGATTTGATACTCTGCTTCTGTTTATGTTTTTTGGTGCTGCTGCTGCAGTTGTGAGGAAATTCTTGGGAGGATCAAGAAATGTTGATGATGATGATGATTACTAG

Protein sequence

>Msa1365210

MCSLSQQSFLISSPTLLNPTFRSSRTRKTVVVVYCSTCSQPQHDDQQQQSSTPLRKKNENKLGKLAMIAVAAGVLTFGSVHDASAAKTGGRIGGQSFRSSAPRPSSPRINNNNSRTNIYINPRVAPPLGGGYGYGGVPYYGGGWGWSPFSFFAPGPSVAVGVGGGFDTLLLFMFFGAAAAVVRKFLGGSRNVDDDDDY*