AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1070900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1070900 MtrunA17_Chr7g0241071 96.759 216 7 0 1 216 1 216 3.05e-147 418
Msa1070900 MtrunA17_Chr6g0463901 50.000 144 71 1 71 213 11 154 2.64e-38 137
Msa1070900 MtrunA17_Chr2g0278581 49.265 136 68 1 71 205 11 146 5.27e-36 131
Msa1070900 MtrunA17_Chr4g0049821 41.549 142 77 4 73 214 70 205 1.14e-23 99.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1070900 AT3G54050.2 75.635 197 38 2 28 214 26 222 1.55e-95 287
Msa1070900 AT3G54050.1 75.635 197 38 2 28 214 26 222 1.55e-95 287
Msa1070900 AT1G43670.1 49.306 144 72 1 71 213 11 154 3.12e-37 134
Msa1070900 AT5G64380.1 44.068 118 60 3 88 202 86 200 1.96e-21 93.2

Find 69 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTAAACAGATTGCTTCTT+TGG 0.237903 7_2:-67240766 Msa1070900:CDS
GCTAATATTTCTAACCTTAC+TGG 0.275094 7_2:-67240735 Msa1070900:CDS
GCAGTAGAAGAGAGTTATTC+AGG 0.314426 7_2:-67240062 Msa1070900:CDS
TTATGGCAGATGAAGGAGTA+TGG 0.325575 7_2:-67239382 Msa1070900:intron
CATAGACGTGAAGGAAAATA+AGG 0.332624 7_2:+67241020 None:intergenic
AGCTTATAACATTGACTAGT+TGG 0.352602 7_2:-67240860 Msa1070900:CDS
AATAACATTAAAGTAATTAC+TGG 0.353650 7_2:+67238610 None:intergenic
GGACACTGCAGCATCAATAT+TGG 0.354716 7_2:+67240001 None:intergenic
CATGGATGGATTGTGTTCTA+AGG 0.361431 7_2:+67241140 None:intergenic
GGAAAATCATTTGATGTCAT+AGG 0.375449 7_2:-67238681 Msa1070900:exon
TCTAACCTTACTGGTGTTCA+AGG 0.382052 7_2:-67240726 Msa1070900:CDS
TTGAAGGAAAAGAGATTGTA+AGG 0.398053 7_2:+67241165 None:intergenic
GTGGTATTTGATCCACTTGA+TGG 0.400154 7_2:-67240029 Msa1070900:CDS
TAAATTAAGCGACATTGTCT+TGG 0.413809 7_2:-67238651 Msa1070900:three_prime_UTR
TCAGGAAGACACTCATCATT+GGG 0.419785 7_2:+67239951 None:intergenic
GTCAGGAAGACACTCATCAT+TGG 0.422599 7_2:+67239950 None:intergenic
CAAGGTGCTGTAAATATTCA+AGG 0.437548 7_2:-67240708 Msa1070900:CDS
CTTTAATGTTATTGTGAACA+AGG 0.448052 7_2:-67238600 Msa1070900:three_prime_UTR
TCATTTGATGTCATAGGGCC+GGG 0.448759 7_2:-67238675 Msa1070900:exon
AGGTATTCTCAAATTGTTTG+AGG 0.455495 7_2:-67240136 Msa1070900:CDS
TCAAATTGTTTGAGGTCAAG+TGG 0.463529 7_2:-67240128 Msa1070900:CDS
AAATTAAGCGACATTGTCTT+GGG 0.466163 7_2:-67238650 Msa1070900:three_prime_UTR
AGAGATTGTAAGGTTCGTAA+TGG 0.469758 7_2:+67241175 None:intergenic
AGTGAAATTGCAAATGGAGT+TGG 0.471209 7_2:-67238719 Msa1070900:CDS
CGACATTGTCTTGGGAATGA+TGG 0.475160 7_2:-67238642 Msa1070900:three_prime_UTR
ATTGTGTTCTAAGGTATTGA+AGG 0.476399 7_2:+67241149 None:intergenic
TATGGCAGATGAAGGAGTAT+GGG 0.477819 7_2:-67239381 Msa1070900:intron
ATCTTACATATATCAGTATG+TGG 0.477879 7_2:-67238478 Msa1070900:three_prime_UTR
ATCATTTGATGTCATAGGGC+CGG 0.481892 7_2:-67238676 Msa1070900:exon
AATTATAGCATCAGAGGAAG+AGG 0.500187 7_2:-67240096 Msa1070900:CDS
TTGAGGTCAAGTGGGAGGAC+AGG 0.501608 7_2:-67240119 Msa1070900:CDS
TCAGACTCATCACTGAGGTC+AGG 0.503913 7_2:+67239933 None:intergenic
AGTATGGGGTTCAAGAGTCT+TGG 0.506733 7_2:-67239366 Msa1070900:CDS
CAGCACCTTGAACACCAGTA+AGG 0.507446 7_2:+67240721 None:intergenic
AGTTGCCAGAGTCTTCAGTT+TGG 0.510591 7_2:-67239325 Msa1070900:CDS
GATAGAAGTGAAATTGCAAA+TGG 0.511556 7_2:-67238725 Msa1070900:CDS
GAAAATCATTTGATGTCATA+GGG 0.525115 7_2:-67238680 Msa1070900:exon
TGATAATCTGATCTTTGTCT+AGG 0.527902 7_2:-67238575 Msa1070900:three_prime_UTR
TTGTTGAAGCAAGAACAAAC+AGG 0.543767 7_2:-67240837 Msa1070900:CDS
CAAATTGTTTGAGGTCAAGT+GGG 0.545156 7_2:-67240127 Msa1070900:CDS
TAACTCTCTTCTACTGCCAC+TGG 0.547536 7_2:+67240068 None:intergenic
ACTTGATGTTGTCTCAAATG+AGG 0.561343 7_2:-67240670 Msa1070900:intron
GACAGGAATTATAGCATCAG+AGG 0.565224 7_2:-67240102 Msa1070900:CDS
GTCGAAGACACAAAGTTGGA+AGG 0.567894 7_2:+67240995 None:intergenic
ATTGATGCTGCAGTGTCCAC+CGG 0.568122 7_2:-67239996 Msa1070900:CDS
AGTTGGAGATACAAAAGAAG+AGG 0.569992 7_2:-67238702 Msa1070900:CDS
TGATGAATGAGTTGCATGGA+TGG 0.583559 7_2:+67241126 None:intergenic
AAGGTGCTGTAAATATTCAA+GGG 0.588316 7_2:-67240707 Msa1070900:CDS
CATCACCAAACTGAAGACTC+TGG 0.589433 7_2:+67239320 None:intergenic
TTTAATGTTATTGTGAACAA+GGG 0.595953 7_2:-67238599 Msa1070900:three_prime_UTR
TCTTACATATATCAGTATGT+GGG 0.598640 7_2:-67238477 Msa1070900:three_prime_UTR
TCGTGTCGAAGACACAAAGT+TGG 0.599445 7_2:+67240991 None:intergenic
ATGGCAGATGAAGGAGTATG+GGG 0.605509 7_2:-67239380 Msa1070900:intron
AGAGGAAGAGGATGTGCCAG+TGG 0.608988 7_2:-67240084 Msa1070900:CDS
GGCTGTTGGTGAAGTAGCTG+CGG 0.625568 7_2:-67240907 Msa1070900:CDS
TCGAAGACACAAAGTTGGAA+GGG 0.631419 7_2:+67240996 None:intergenic
CATTTGATGTCATAGGGCCG+GGG 0.632970 7_2:-67238674 Msa1070900:exon
AAGCATGTGAGTGGGTCTGG+AGG 0.633787 7_2:-67240942 Msa1070900:CDS
ATTGTTTGAGGTCAAGTGGG+AGG 0.641340 7_2:-67240124 Msa1070900:CDS
CAATGTCGCTTAATTTACCC+CGG 0.641557 7_2:+67238657 None:intergenic
TGGAAGGGACATAGACGTGA+AGG 0.642008 7_2:+67241011 None:intergenic
ATATTGGATGAACCATCAAG+TGG 0.643892 7_2:+67240017 None:intergenic
AGGTGCTGTAAATATTCAAG+GGG 0.646017 7_2:-67240706 Msa1070900:CDS
GGAGTGAGATGCATGGCTGT+TGG 0.653986 7_2:-67240921 Msa1070900:CDS
GTCTGGAGGAGTGAGATGCA+TGG 0.657829 7_2:-67240928 Msa1070900:CDS
CTAGTGATGAATGAGTTGCA+TGG 0.675084 7_2:+67241122 None:intergenic
CAGGAAGACACTCATCATTG+GGG 0.698773 7_2:+67239952 None:intergenic
TTATTCAGGAAACTACATTG+TGG 0.730799 7_2:-67240048 Msa1070900:CDS
TGAGGTCAGACTCATCACTG+AGG 0.790814 7_2:+67239928 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTTAAGAGATAAAATAA+TGG - chr7_2:67240385-67240404 Msa1070900:intron 10.0%
!!! AATGTGTATTTTTTTAATAT+AGG - chr7_2:67240853-67240872 Msa1070900:CDS 10.0%
!!! ATGTGTATTTTTTTAATATA+GGG - chr7_2:67240854-67240873 Msa1070900:CDS 10.0%
!!! TATTGTTTTCATTTATGATT+AGG - chr7_2:67239721-67239740 Msa1070900:intron 15.0%
!! AAAAATACAAAAAGTAAGAA+CGG + chr7_2:67240060-67240079 None:intergenic 15.0%
!! TCTCTATAATTTAATACTAT+TGG - chr7_2:67240497-67240516 Msa1070900:intron 15.0%
!!! TGTGTATTTTTTTAATATAG+GGG - chr7_2:67240855-67240874 Msa1070900:CDS 15.0%
!! AATAACATTAAAGTAATTAC+TGG + chr7_2:67240996-67241015 None:intergenic 15.0%
!!! AATTTTGTTTTATGATGATT+TGG - chr7_2:67241067-67241086 Msa1070900:CDS 15.0%
!!! TGTTTAATTAGTTTTGAACT+AGG - chr7_2:67238970-67238989 Msa1070900:intron 20.0%
!!! GTTTAATTAGTTTTGAACTA+GGG - chr7_2:67238971-67238990 Msa1070900:intron 20.0%
!! AATATCAATTATTTCAACCT+TGG + chr7_2:67239066-67239085 None:intergenic 20.0%
!! ATTATCTTCAGTGTTAATTT+AGG - chr7_2:67239191-67239210 Msa1070900:intron 20.0%
!!! TTAAACTTTAAGGTTTACTT+AGG - chr7_2:67239396-67239415 Msa1070900:intron 20.0%
!! AAAATACAAAAAGTAAGAAC+GGG + chr7_2:67240059-67240078 None:intergenic 20.0%
!!! TAAAACAAATTCACTTTTCT+TGG + chr7_2:67240204-67240223 None:intergenic 20.0%
!!! AGAAAAGTGAATTTGTTTTA+TGG - chr7_2:67240204-67240223 Msa1070900:intron 20.0%
!!! TTTTTATAAATGCAAACCAT+TGG + chr7_2:67240314-67240333 None:intergenic 20.0%
!!! ATGGTTTGCATTTATAAAAA+TGG - chr7_2:67240314-67240333 Msa1070900:intron 20.0%
!!! GTGTATTTTTTTAATATAGG+GGG - chr7_2:67240856-67240875 Msa1070900:CDS 20.0%
!! TTTAATGTTATTGTGAACAA+GGG - chr7_2:67241004-67241023 Msa1070900:CDS 20.0%
!! AAACAAAATTACAAAAACAC+TGG + chr7_2:67241057-67241076 None:intergenic 20.0%
! AGTGCAAAATTCAACAAAAA+TGG - chr7_2:67238513-67238532 Msa1070900:three_prime_UTR 25.0%
!!! TGTTTTGAATAGTATTTCGT+TGG - chr7_2:67238813-67238832 Msa1070900:intron 25.0%
! ATGTAGGTACTTAAACTTTA+AGG - chr7_2:67239386-67239405 Msa1070900:intron 25.0%
! ATAAGTATGAATGATTCAAG+TGG - chr7_2:67239835-67239854 Msa1070900:intron 25.0%
!! ATACCTTAATTTGGTTAAAC+AGG - chr7_2:67240017-67240036 Msa1070900:CDS 25.0%
!! TACCTTAATTTGGTTAAACA+GGG - chr7_2:67240018-67240037 Msa1070900:CDS 25.0%
! AATTATAGATCATTGCTGAT+TGG + chr7_2:67240370-67240389 None:intergenic 25.0%
! AAATGATTATGTAGAAAGCT+TGG - chr7_2:67240451-67240470 Msa1070900:intron 25.0%
! TATAGAGAAACTTACTTTCA+AGG + chr7_2:67240485-67240504 None:intergenic 25.0%
! TAAAAGATTATATGTACGCA+AGG - chr7_2:67240585-67240604 Msa1070900:intron 25.0%
! AAAAGATTATATGTACGCAA+GGG - chr7_2:67240586-67240605 Msa1070900:intron 25.0%
! TGTAAAATATGCTATGTTCT+GGG + chr7_2:67240674-67240693 None:intergenic 25.0%
! TTGTAAAATATGCTATGTTC+TGG + chr7_2:67240675-67240694 None:intergenic 25.0%
! GAAAATCATTTGATGTCATA+GGG - chr7_2:67240923-67240942 Msa1070900:CDS 25.0%
! CTTTAATGTTATTGTGAACA+AGG - chr7_2:67241003-67241022 Msa1070900:CDS 25.0%
! ATCTTACATATATCAGTATG+TGG - chr7_2:67241125-67241144 Msa1070900:five_prime_UTR 25.0%
! TCTTACATATATCAGTATGT+GGG - chr7_2:67241126-67241145 Msa1070900:five_prime_UTR 25.0%
TTGAAGGAAAAGAGATTGTA+AGG + chr7_2:67238441-67238460 None:intergenic 30.0%
!! ATTGTGTTCTAAGGTATTGA+AGG + chr7_2:67238457-67238476 None:intergenic 30.0%
TTCAACAAAAATGGTTGCAA+TGG - chr7_2:67238522-67238541 Msa1070900:three_prime_UTR 30.0%
! AGCTTATAACATTGACTAGT+TGG - chr7_2:67238743-67238762 Msa1070900:intron 30.0%
ATGTAAACAGATTGCTTCTT+TGG - chr7_2:67238837-67238856 Msa1070900:intron 30.0%
! GCTAATATTTCTAACCTTAC+TGG - chr7_2:67238868-67238887 Msa1070900:intron 30.0%
!! AAGGTGCTGTAAATATTCAA+GGG - chr7_2:67238896-67238915 Msa1070900:intron 30.0%
!!! AGACAACATCAAGTTTTTTC+TGG + chr7_2:67238927-67238946 None:intergenic 30.0%
ATCTTCAGTGTTAATTTAGG+TGG - chr7_2:67239194-67239213 Msa1070900:intron 30.0%
TCTTCAGTGTTAATTTAGGT+GGG - chr7_2:67239195-67239214 Msa1070900:intron 30.0%
ATTCAAAGTGACTCTAATTG+AGG + chr7_2:67239259-67239278 None:intergenic 30.0%
ACATTTATGACCAAGTATGT+AGG - chr7_2:67239370-67239389 Msa1070900:CDS 30.0%
AGTTTAAGTACCTACATACT+TGG + chr7_2:67239383-67239402 None:intergenic 30.0%
! TGTTTTCTATTCTTTTGCTC+AGG - chr7_2:67239447-67239466 Msa1070900:intron 30.0%
AGGTATTCTCAAATTGTTTG+AGG - chr7_2:67239467-67239486 Msa1070900:intron 30.0%
TTATTCAGGAAACTACATTG+TGG - chr7_2:67239555-67239574 Msa1070900:intron 30.0%
GTAAATTCCAAAAATGGAAC+CGG + chr7_2:67239629-67239648 None:intergenic 30.0%
TTATGATTAGGAATCGAACT+CGG - chr7_2:67239733-67239752 Msa1070900:intron 30.0%
!! TAACCAAATTAAGGTATCGT+TGG + chr7_2:67240014-67240033 None:intergenic 30.0%
! ACCTTAATTTGGTTAAACAG+GGG - chr7_2:67240019-67240038 Msa1070900:CDS 30.0%
CTTGGAATCATGAGAAAAAT+CGG + chr7_2:67240186-67240205 None:intergenic 30.0%
!!! ATTTGTTTTATGGCAGATGA+AGG - chr7_2:67240214-67240233 Msa1070900:intron 30.0%
GTGATAATAGCAAATCAACT+TGG - chr7_2:67240344-67240363 Msa1070900:intron 30.0%
ATAGAACCACTCTATGTAAT+TGG + chr7_2:67240426-67240445 None:intergenic 30.0%
TAAGAGAGAACCTGAATATA+AGG + chr7_2:67240615-67240634 None:intergenic 30.0%
GATAGAAGTGAAATTGCAAA+TGG - chr7_2:67240878-67240897 Msa1070900:CDS 30.0%
GGAAAATCATTTGATGTCAT+AGG - chr7_2:67240922-67240941 Msa1070900:CDS 30.0%
TAAATTAAGCGACATTGTCT+TGG - chr7_2:67240952-67240971 Msa1070900:CDS 30.0%
AAATTAAGCGACATTGTCTT+GGG - chr7_2:67240953-67240972 Msa1070900:CDS 30.0%
TGATAATCTGATCTTTGTCT+AGG - chr7_2:67241028-67241047 Msa1070900:CDS 30.0%
AGAGATTGTAAGGTTCGTAA+TGG + chr7_2:67238431-67238450 None:intergenic 35.0%
CATAGACGTGAAGGAAAATA+AGG + chr7_2:67238586-67238605 None:intergenic 35.0%
! TCAAGAAAAAAGCATGTGAG+TGG - chr7_2:67238652-67238671 Msa1070900:three_prime_UTR 35.0%
! CAAGAAAAAAGCATGTGAGT+GGG - chr7_2:67238653-67238672 Msa1070900:three_prime_UTR 35.0%
TTGTTGAAGCAAGAACAAAC+AGG - chr7_2:67238766-67238785 Msa1070900:intron 35.0%
!! CAAGGTGCTGTAAATATTCA+AGG - chr7_2:67238895-67238914 Msa1070900:intron 35.0%
! AGGTGCTGTAAATATTCAAG+GGG - chr7_2:67238897-67238916 Msa1070900:intron 35.0%
ACTTGATGTTGTCTCAAATG+AGG - chr7_2:67238933-67238952 Msa1070900:intron 35.0%
TTGAGGCCTAAAATGTTTCA+TGG - chr7_2:67239040-67239059 Msa1070900:intron 35.0%
CAGAGAACCACAATTAAATG+CGG - chr7_2:67239087-67239106 Msa1070900:intron 35.0%
ACATTAGCCGCATTTAATTG+TGG + chr7_2:67239097-67239116 None:intergenic 35.0%
! TGCTAAAGGAGTGTATTAGA+AGG - chr7_2:67239333-67239352 Msa1070900:CDS 35.0%
! GCTAAAGGAGTGTATTAGAA+GGG - chr7_2:67239334-67239353 Msa1070900:CDS 35.0%
GTATTAGAAGGGTTTACTCT+TGG - chr7_2:67239345-67239364 Msa1070900:CDS 35.0%
! TCAAATTGTTTGAGGTCAAG+TGG - chr7_2:67239475-67239494 Msa1070900:intron 35.0%
! CAAATTGTTTGAGGTCAAGT+GGG - chr7_2:67239476-67239495 Msa1070900:intron 35.0%
AATTATAGCATCAGAGGAAG+AGG - chr7_2:67239507-67239526 Msa1070900:intron 35.0%
ATATTGGATGAACCATCAAG+TGG + chr7_2:67239589-67239608 None:intergenic 35.0%
CAAGCAACTTAGAAACCTAA+AGG - chr7_2:67239936-67239955 Msa1070900:CDS 35.0%
CAACTTAGAAACCTAAAGGT+TGG - chr7_2:67239940-67239959 Msa1070900:CDS 35.0%
AACTAGTTGAACCAACCTTT+AGG + chr7_2:67239954-67239973 None:intergenic 35.0%
! TAAAGGTTGGTTCAACTAGT+TGG - chr7_2:67239953-67239972 Msa1070900:CDS 35.0%
! AAAGGTTGGTTCAACTAGTT+GGG - chr7_2:67239954-67239973 Msa1070900:CDS 35.0%
ATGCCAACGATACCTTAATT+TGG - chr7_2:67240008-67240027 Msa1070900:CDS 35.0%
ACCCCTGTTTAACCAAATTA+AGG + chr7_2:67240023-67240042 None:intergenic 35.0%
AATCATGAGAAAAATCGGAC+TGG + chr7_2:67240181-67240200 None:intergenic 35.0%
GAATGACCAATTACATAGAG+TGG - chr7_2:67240417-67240436 Msa1070900:intron 35.0%
TGATTATGTAGAAAGCTTGG+TGG - chr7_2:67240454-67240473 Msa1070900:intron 35.0%
GGAAGTTAAATTGTCATGCA+TGG + chr7_2:67240653-67240672 None:intergenic 35.0%
GTCTTCACTTATGAGCATTA+TGG - chr7_2:67240787-67240806 Msa1070900:CDS 35.0%
AGTGAAATTGCAAATGGAGT+TGG - chr7_2:67240884-67240903 Msa1070900:CDS 35.0%
AGTTGGAGATACAAAAGAAG+AGG - chr7_2:67240901-67240920 Msa1070900:CDS 35.0%
!! CATGGATGGATTGTGTTCTA+AGG + chr7_2:67238466-67238485 None:intergenic 40.0%
TGATGAATGAGTTGCATGGA+TGG + chr7_2:67238480-67238499 None:intergenic 40.0%
CTAGTGATGAATGAGTTGCA+TGG + chr7_2:67238484-67238503 None:intergenic 40.0%
TCGAAGACACAAAGTTGGAA+GGG + chr7_2:67238610-67238629 None:intergenic 40.0%
TCTAACCTTACTGGTGTTCA+AGG - chr7_2:67238877-67238896 Msa1070900:intron 40.0%
GACCTCTTTCTCTTAGAAAC+CGG - chr7_2:67239013-67239032 Msa1070900:intron 40.0%
! CCTTGGCCATGAAACATTTT+AGG + chr7_2:67239049-67239068 None:intergenic 40.0%
CCTAAAATGTTTCATGGCCA+AGG - chr7_2:67239046-67239065 Msa1070900:intron 40.0%
GGCTAATGTTAAACCCACTT+GGG - chr7_2:67239108-67239127 Msa1070900:intron 40.0%
AATGTTAAACCCACTTGGGT+TGG - chr7_2:67239112-67239131 Msa1070900:intron 40.0%
TACAATCCAAATCACGACTG+CGG - chr7_2:67239304-67239323 Msa1070900:intron 40.0%
TATTATCCGCAGTCGTGATT+TGG + chr7_2:67239313-67239332 None:intergenic 40.0%
GACTGCGGATAATATGCTAA+AGG - chr7_2:67239319-67239338 Msa1070900:CDS 40.0%
GACAGGAATTATAGCATCAG+AGG - chr7_2:67239501-67239520 Msa1070900:intron 40.0%
GCAGTAGAAGAGAGTTATTC+AGG - chr7_2:67239541-67239560 Msa1070900:intron 40.0%
GTGGTATTTGATCCACTTGA+TGG - chr7_2:67239574-67239593 Msa1070900:intron 40.0%
AATTCCAAAAATGGAACCGG+TGG + chr7_2:67239626-67239645 None:intergenic 40.0%
GGGGCTGTAAATTCCAAAAA+TGG + chr7_2:67239635-67239654 None:intergenic 40.0%
TCAGGAAGACACTCATCATT+GGG + chr7_2:67239655-67239674 None:intergenic 40.0%
AGGAATCGAACTCGGTAATT+TGG - chr7_2:67239741-67239760 Msa1070900:intron 40.0%
GTAAACGAATCTACGTCTTC+AGG + chr7_2:67239773-67239792 None:intergenic 40.0%
TTCCAGCTCAAGTTCAACTA+TGG - chr7_2:67240110-67240129 Msa1070900:CDS 40.0%
AACCATAGTTGAACTTGAGC+TGG + chr7_2:67240115-67240134 None:intergenic 40.0%
TGAACCGATTGAACCATGAT+CGG - chr7_2:67240134-67240153 Msa1070900:CDS 40.0%
CTTTCCGATCATGGTTCAAT+CGG + chr7_2:67240141-67240160 None:intergenic 40.0%
TTGGTTAGACTTTCCGATCA+TGG + chr7_2:67240150-67240169 None:intergenic 40.0%
! AATCGGACTGGAGATCAAAT+TGG + chr7_2:67240169-67240188 None:intergenic 40.0%
TTATGGCAGATGAAGGAGTA+TGG - chr7_2:67240221-67240240 Msa1070900:intron 40.0%
! TATGGCAGATGAAGGAGTAT+GGG - chr7_2:67240222-67240241 Msa1070900:intron 40.0%
!!! GTTTGGTGATGCTTTTCCAA+TGG - chr7_2:67240295-67240314 Msa1070900:intron 40.0%
ATCATTTGATGTCATAGGGC+CGG - chr7_2:67240927-67240946 Msa1070900:CDS 40.0%
! CAATGTCGCTTAATTTACCC+CGG + chr7_2:67240949-67240968 None:intergenic 40.0%
GTCGAAGACACAAAGTTGGA+AGG + chr7_2:67238611-67238630 None:intergenic 45.0%
TCGTGTCGAAGACACAAAGT+TGG + chr7_2:67238615-67238634 None:intergenic 45.0%
! AAAAAGCATGTGAGTGGGTC+TGG - chr7_2:67238658-67238677 Msa1070900:three_prime_UTR 45.0%
TTTGAACTAGGGTCGAACTC+TGG - chr7_2:67238982-67239001 Msa1070900:intron 45.0%
! CTCCGGTTTCTAAGAGAAAG+AGG + chr7_2:67239018-67239037 None:intergenic 45.0%
CTCTTTCTCTTAGAAACCGG+AGG - chr7_2:67239016-67239035 Msa1070900:intron 45.0%
TCTTAGAAACCGGAGGATTG+AGG - chr7_2:67239023-67239042 Msa1070900:intron 45.0%
! CATTTTAGGCCTCAATCCTC+CGG + chr7_2:67239035-67239054 None:intergenic 45.0%
CGGCTAATGTTAAACCCACT+TGG - chr7_2:67239107-67239126 Msa1070900:intron 45.0%
!! TTGGCCTACTGTATTGGCTT+GGG - chr7_2:67239131-67239150 Msa1070900:intron 45.0%
TAATCGAACCTGACACCTTG+AGG + chr7_2:67239175-67239194 None:intergenic 45.0%
! ATTGTTTGAGGTCAAGTGGG+AGG - chr7_2:67239479-67239498 Msa1070900:intron 45.0%
TAACTCTCTTCTACTGCCAC+TGG + chr7_2:67239538-67239557 None:intergenic 45.0%
GGACACTGCAGCATCAATAT+TGG + chr7_2:67239605-67239624 None:intergenic 45.0%
CAGGAAGACACTCATCATTG+GGG + chr7_2:67239654-67239673 None:intergenic 45.0%
GTCAGGAAGACACTCATCAT+TGG + chr7_2:67239656-67239675 None:intergenic 45.0%
! CGAAGCATTCACTTACTGTG+AGG + chr7_2:67239696-67239715 None:intergenic 45.0%
TCGAACTCGGTAATTTGGAG+TGG - chr7_2:67239746-67239765 Msa1070900:intron 45.0%
! CGAACTCGGTAATTTGGAGT+GGG - chr7_2:67239747-67239766 Msa1070900:intron 45.0%
TCGATAAACTTGCCTGCTCT+CGG + chr7_2:67239980-67239999 None:intergenic 45.0%
GAGCAGGCAAGTTTATCGAT+TGG - chr7_2:67239981-67240000 Msa1070900:CDS 45.0%
GGTTAAACAGGGGTCACAAT+TGG - chr7_2:67240029-67240048 Msa1070900:CDS 45.0%
! ATGGCAGATGAAGGAGTATG+GGG - chr7_2:67240223-67240242 Msa1070900:intron 45.0%
AGTATGGGGTTCAAGAGTCT+TGG - chr7_2:67240237-67240256 Msa1070900:intron 45.0%
AGTTGCCAGAGTCTTCAGTT+TGG - chr7_2:67240278-67240297 Msa1070900:intron 45.0%
CATCACCAAACTGAAGACTC+TGG + chr7_2:67240286-67240305 None:intergenic 45.0%
TCATTTGATGTCATAGGGCC+GGG - chr7_2:67240928-67240947 Msa1070900:CDS 45.0%
CGACATTGTCTTGGGAATGA+TGG - chr7_2:67240961-67240980 Msa1070900:CDS 45.0%
TGGAAGGGACATAGACGTGA+AGG + chr7_2:67238595-67238614 None:intergenic 50.0%
CAGCACCTTGAACACCAGTA+AGG + chr7_2:67238885-67238904 None:intergenic 50.0%
TACAGTAGGCCAACCCAAGT+GGG + chr7_2:67239124-67239143 None:intergenic 50.0%
ATACAGTAGGCCAACCCAAG+TGG + chr7_2:67239125-67239144 None:intergenic 50.0%
!! CTTGGGTTGGCCTACTGTAT+TGG - chr7_2:67239125-67239144 Msa1070900:intron 50.0%
!! GTTGGCCTACTGTATTGGCT+TGG - chr7_2:67239130-67239149 Msa1070900:intron 50.0%
AGGTCCCAAGCCAATACAGT+AGG + chr7_2:67239138-67239157 None:intergenic 50.0%
!! TACTGTATTGGCTTGGGACC+TGG - chr7_2:67239137-67239156 Msa1070900:intron 50.0%
!! ACTGTATTGGCTTGGGACCT+GGG - chr7_2:67239138-67239157 Msa1070900:intron 50.0%
ATTGATGCTGCAGTGTCCAC+CGG - chr7_2:67239607-67239626 Msa1070900:intron 50.0%
!!! GTGTCCACCGGTTCCATTTT+TGG - chr7_2:67239619-67239638 Msa1070900:intron 50.0%
TCAGACTCATCACTGAGGTC+AGG + chr7_2:67239673-67239692 None:intergenic 50.0%
TGAGGTCAGACTCATCACTG+AGG + chr7_2:67239678-67239697 None:intergenic 50.0%
GCAAGGGCTGCCTTATATTC+AGG - chr7_2:67240602-67240621 Msa1070900:intron 50.0%
CATTTGATGTCATAGGGCCG+GGG - chr7_2:67240929-67240948 Msa1070900:CDS 50.0%
AAGCATGTGAGTGGGTCTGG+AGG - chr7_2:67238661-67238680 Msa1070900:three_prime_UTR 55.0%
GTCTGGAGGAGTGAGATGCA+TGG - chr7_2:67238675-67238694 Msa1070900:exon 55.0%
GGAGTGAGATGCATGGCTGT+TGG - chr7_2:67238682-67238701 Msa1070900:CDS 55.0%
! GGCTGTTGGTGAAGTAGCTG+CGG - chr7_2:67238696-67238715 Msa1070900:CDS 55.0%
TCGAACCTGACACCTTGAGG+AGG + chr7_2:67239172-67239191 None:intergenic 55.0%
TTGAGGTCAAGTGGGAGGAC+AGG - chr7_2:67239484-67239503 Msa1070900:intron 55.0%
AGAGGAAGAGGATGTGCCAG+TGG - chr7_2:67239519-67239538 Msa1070900:intron 55.0%
! TTGAGGAGGAGCACACTCCC+AGG + chr7_2:67239158-67239177 None:intergenic 60.0%
! TGGGAGTGTGCTCCTCCTCA+AGG - chr7_2:67239157-67239176 Msa1070900:intron 60.0%
! GTGCTCCTCCTCAAGGTGTC+AGG - chr7_2:67239164-67239183 Msa1070900:intron 60.0%
CAACTAGTTGGGCCGAGAGC+AGG - chr7_2:67239965-67239984 Msa1070900:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 67238424 67241201 67238424 ID=Msa1070900;Name=Msa1070900
chr7_2 mRNA 67238424 67241201 67238424 ID=Msa1070900-mRNA-1;Parent=Msa1070900;Name=Msa1070900-mRNA-1;_AED=0.19;_eAED=0.19;_QI=108|0.66|0.75|1|1|1|4|258|269
chr7_2 exon 67238424 67238750 67238424 ID=Msa1070900-mRNA-1:exon:14578;Parent=Msa1070900-mRNA-1
chr7_2 exon 67239309 67239395 67239309 ID=Msa1070900-mRNA-1:exon:14577;Parent=Msa1070900-mRNA-1
chr7_2 exon 67239926 67240156 67239926 ID=Msa1070900-mRNA-1:exon:14576;Parent=Msa1070900-mRNA-1
chr7_2 exon 67240671 67241201 67240671 ID=Msa1070900-mRNA-1:exon:14575;Parent=Msa1070900-mRNA-1
chr7_2 five_prime_UTR 67241094 67241201 67241094 ID=Msa1070900-mRNA-1:five_prime_utr;Parent=Msa1070900-mRNA-1
chr7_2 CDS 67240671 67241093 67240671 ID=Msa1070900-mRNA-1:cds;Parent=Msa1070900-mRNA-1
chr7_2 CDS 67239926 67240156 67239926 ID=Msa1070900-mRNA-1:cds;Parent=Msa1070900-mRNA-1
chr7_2 CDS 67239309 67239395 67239309 ID=Msa1070900-mRNA-1:cds;Parent=Msa1070900-mRNA-1
chr7_2 CDS 67238682 67238750 67238682 ID=Msa1070900-mRNA-1:cds;Parent=Msa1070900-mRNA-1
chr7_2 three_prime_UTR 67238424 67238681 67238424 ID=Msa1070900-mRNA-1:three_prime_utr;Parent=Msa1070900-mRNA-1
Gene Sequence

>Msa1070900

ATGGTTGCAATGGCAGCAGCAACAGCATCATCACAATTGATATTCTCAAAACCTTATTTTCCTTCACGTCTATGTCCCTTCCAACTTTGTGTCTTCGACACGAAATCTGTGTTATCAAGTTCAAGAAAAAAGCATGTGAGTGGGTCTGGAGGAGTGAGATGCATGGCTGTTGGTGAAGTAGCTGCGGAGACGAAGAAAAGAAGTAGTTATGAGCTTATAACATTGACTAGTTGGTTGTTGAAGCAAGAACAAACAGGAGTTATTGATGCAGAACTTACTATTGTTTTGAATAGTATTTCGTTGGCATGTAAACAGATTGCTTCTTTGGTTCAAAGAGCTAATATTTCTAACCTTACTGGTGTTCAAGGTGCTGTAAATATTCAAGGGGAAGACCAGAAAAAACTTGATGTTGTCTCAAATGAGGTATTCTCAAATTGTTTGAGGTCAAGTGGGAGGACAGGAATTATAGCATCAGAGGAAGAGGATGTGCCAGTGGCAGTAGAAGAGAGTTATTCAGGAAACTACATTGTGGTATTTGATCCACTTGATGGTTCATCCAATATTGATGCTGCAGTGTCCACCGGTTCCATTTTTGGAATTTACAGCCCCAATGATGAGTGTCTTCCTGACCTCAGTGATGAGTCTGACCTCACAATGAAGGAGTATGGGGTTCAAGAGTCTTGGACTAAATTGTTTAAGATTAGTTGCCAGAGTCTTCAGTTTGGTGATGCTTTTCCAATGGGGGATAGAAGTGAAATTGCAAATGGAGTTGGAGATACAAAAGAAGAGGAAAATCATTTGATGTCATAG

Protein sequence

>Msa1070900

MVAMAAATASSQLIFSKPYFPSRLCPFQLCVFDTKSVLSSSRKKHVSGSGGVRCMAVGEVAAETKKRSSYELITLTSWLLKQEQTGVIDAELTIVLNSISLACKQIASLVQRANISNLTGVQGAVNIQGEDQKKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTGSIFGIYSPNDECLPDLSDESDLTMKEYGVQESWTKLFKISCQSLQFGDAFPMGDRSEIANGVGDTKEEENHLMS*