AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1258940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1258940 MtrunA17_Chr4g0058151 92.691 301 20 2 1 300 1 300 0.0 519
Msa1258940 MtrunA17_Chr3g0116631 59.609 307 96 6 1 298 1 288 2.64e-110 321
Msa1258940 MtrunA17_Chr1g0181111 43.831 308 126 8 10 300 3 280 3.87e-62 198
Msa1258940 MtrunA17_Chr7g0267571 40.110 182 101 3 122 295 110 291 1.09e-40 144
Msa1258940 MtrunA17_Chr7g0267571 46.429 84 45 0 122 205 213 296 6.49e-17 79.7
Msa1258940 MtrunA17_Chr1g0168601 42.331 163 86 3 133 295 78 232 7.95e-39 136
Msa1258940 MtrunA17_Chr1g0177101 38.122 181 108 3 116 292 103 283 2.51e-36 132
Msa1258940 MtrunA17_Chr3g0087481 39.429 175 102 1 122 292 61 235 2.06e-33 122
Msa1258940 MtrunA17_Chr3g0087481 46.154 78 42 0 217 294 61 138 1.46e-17 80.1
Msa1258940 MtrunA17_Chr4g0058141 53.398 103 46 2 164 264 2 104 1.72e-28 105
Msa1258940 MtrunA17_Chr4g0035001 57.143 77 33 0 217 293 7 83 6.87e-26 100
Msa1258940 MtrunA17_Chr4g0035001 42.105 76 44 0 122 197 7 82 2.53e-13 66.6
Msa1258940 MtrunA17_Chr3g0132451 32.240 183 110 6 115 289 80 256 7.49e-23 95.9
Msa1258940 MtrunA17_Chr4g0035051 50.649 77 38 0 217 293 9 85 8.32e-23 91.3
Msa1258940 MtrunA17_Chr4g0035051 41.026 78 46 0 120 197 7 84 1.18e-13 66.6
Msa1258940 MtrunA17_Chr4g0061451 51.852 81 39 0 217 297 43 123 5.38e-22 92.8
Msa1258940 MtrunA17_Chr4g0061451 39.759 83 48 1 122 204 43 123 6.30e-12 64.7
Msa1258940 MtrunA17_Chr3g0119311 49.383 81 41 0 217 297 37 117 5.61e-22 89.4
Msa1258940 MtrunA17_Chr3g0119311 39.286 84 49 1 122 203 37 120 1.85e-11 60.8
Msa1258940 MtrunA17_Chr4g0035031 53.247 77 36 0 217 293 9 85 9.41e-22 90.5
Msa1258940 MtrunA17_Chr4g0035031 41.026 78 46 0 120 197 7 84 4.03e-13 66.6
Msa1258940 MtrunA17_Chr5g0411091 34.637 179 114 3 123 299 98 275 1.09e-21 93.2
Msa1258940 MtrunA17_Chr3g0110211 32.402 179 112 2 118 295 22 192 1.68e-21 93.2
Msa1258940 MtrunA17_Chr2g0328791 30.481 187 118 5 113 292 4 185 4.04e-21 92.8
Msa1258940 MtrunA17_Chr2g0328791 27.723 202 109 3 120 290 107 302 1.81e-13 70.5
Msa1258940 MtrunA17_Chr4g0045221 33.158 190 117 4 117 300 112 297 6.60e-21 92.4
Msa1258940 MtrunA17_Chr4g0045221 25.126 199 118 4 116 289 209 401 1.30e-12 67.8
Msa1258940 MtrunA17_Chr3g0120721 28.814 177 117 4 122 298 19 186 2.74e-20 89.7
Msa1258940 MtrunA17_Chr3g0086861 50.000 84 42 0 217 300 45 128 5.10e-20 89.7
Msa1258940 MtrunA17_Chr3g0086861 40.000 85 49 1 120 204 43 125 4.92e-12 66.2
Msa1258940 MtrunA17_Chr3g0101061 31.868 182 100 4 122 289 41 212 5.42e-20 90.1
Msa1258940 MtrunA17_Chr3g0101061 33.544 158 93 5 59 209 76 228 3.09e-13 69.7
Msa1258940 MtrunA17_Chr7g0219021 42.529 87 50 0 214 300 38 124 1.44e-19 85.9
Msa1258940 MtrunA17_Chr7g0219021 42.683 82 47 0 122 203 41 122 7.73e-15 72.8
Msa1258940 MtrunA17_Chr4g0070231 33.333 171 102 3 123 292 48 207 2.02e-19 87.8
Msa1258940 MtrunA17_Chr3g0121631 48.101 79 40 1 217 295 37 114 8.51e-19 81.3
Msa1258940 MtrunA17_Chr2g0290191 31.319 182 103 5 122 289 5 178 9.98e-19 86.3
Msa1258940 MtrunA17_Chr2g0290191 38.043 92 55 2 117 207 102 192 5.49e-12 65.9
Msa1258940 MtrunA17_Chr5g0447761 30.159 189 108 4 118 292 3 181 2.27e-18 85.1
Msa1258940 MtrunA17_Chr5g0447761 30.818 159 105 4 62 216 45 202 7.95e-13 68.6
Msa1258940 MtrunA17_Chr3g0133651 27.919 197 110 5 118 299 90 269 2.55e-18 84.7
Msa1258940 MtrunA17_Chr3g0133651 26.178 191 125 4 120 300 186 370 1.71e-14 73.6
Msa1258940 MtrunA17_Chr4g0074711 29.379 177 116 4 123 295 76 247 4.98e-18 83.6
Msa1258940 MtrunA17_Chr4g0074711 26.064 188 113 4 118 289 164 341 9.47e-15 73.9
Msa1258940 MtrunA17_Chr1g0153871 27.979 193 112 5 119 299 95 272 1.47e-17 82.4
Msa1258940 MtrunA17_Chr1g0153871 28.022 182 113 4 120 290 189 363 3.36e-16 78.6
Msa1258940 MtrunA17_Chr2g0288251 28.977 176 120 3 123 295 62 235 5.62e-17 80.5
Msa1258940 MtrunA17_Chr2g0288251 26.702 191 123 3 110 289 144 328 4.52e-14 72.0
Msa1258940 MtrunA17_Chr3g0139111 30.058 173 109 3 123 294 62 223 1.87e-16 79.3
Msa1258940 MtrunA17_Chr1g0210241 44.304 79 44 0 217 295 8 86 2.19e-16 77.4
Msa1258940 MtrunA17_Chr1g0210241 40.244 82 49 0 119 200 5 86 2.53e-14 71.6
Msa1258940 MtrunA17_Chr6g0466501 29.121 182 119 3 119 299 23 195 3.11e-16 79.0
Msa1258940 MtrunA17_Chr6g0466501 29.255 188 117 5 123 298 202 385 4.15e-14 72.4
Msa1258940 MtrunA17_Chr6g0466501 28.249 177 117 5 123 298 115 282 2.92e-11 63.9
Msa1258940 MtrunA17_Chr8g0344491 30.899 178 111 3 116 292 57 223 4.02e-16 78.2
Msa1258940 MtrunA17_Chr1g0186351 30.319 188 115 4 118 292 3 187 6.32e-16 77.8
Msa1258940 MtrunA17_Chr1g0186351 43.210 81 45 1 122 202 113 192 3.47e-12 66.6
Msa1258940 MtrunA17_Chr6g0465751 28.571 182 120 3 119 299 23 195 7.61e-16 77.8
Msa1258940 MtrunA17_Chr6g0465751 29.787 188 116 5 123 298 202 385 1.92e-15 76.6
Msa1258940 MtrunA17_Chr6g0465751 28.249 177 117 5 123 298 115 282 2.56e-11 64.3
Msa1258940 MtrunA17_Chr7g0265341 27.957 186 121 4 123 298 251 433 7.82e-16 77.8
Msa1258940 MtrunA17_Chr7g0265341 27.273 176 123 3 123 298 160 330 1.58e-15 77.0
Msa1258940 MtrunA17_Chr7g0265341 28.571 168 110 3 123 289 72 230 7.12e-13 68.9
Msa1258940 MtrunA17_Chr6g0449481 24.719 178 125 4 122 299 46 214 9.88e-16 77.0
Msa1258940 MtrunA17_Chr2g0278661 43.590 78 44 0 216 293 7 84 1.72e-15 74.3
Msa1258940 MtrunA17_Chr2g0278661 37.647 85 53 0 118 202 4 88 2.42e-14 71.2
Msa1258940 MtrunA17_Chr4g0050781 46.154 78 42 0 216 293 7 84 1.76e-15 73.9
Msa1258940 MtrunA17_Chr4g0050781 38.272 81 50 0 119 199 5 85 4.83e-13 67.0
Msa1258940 MtrunA17_Chr1g0212611 28.571 217 135 8 89 292 177 386 1.99e-15 76.3
Msa1258940 MtrunA17_Chr6g0465631 29.947 187 117 5 123 298 107 290 2.62e-15 75.9
Msa1258940 MtrunA17_Chr6g0465631 31.461 178 113 5 123 298 17 187 6.96e-12 65.9
Msa1258940 MtrunA17_Chr6g0466451 29.947 187 117 5 123 298 107 290 2.67e-15 75.9
Msa1258940 MtrunA17_Chr6g0466451 31.461 178 113 5 123 298 17 187 7.22e-12 65.9
Msa1258940 MtrunA17_Chr4g0045921 29.213 178 115 5 122 297 77 245 2.91e-15 75.1
Msa1258940 MtrunA17_Chr1g0179701 28.492 179 118 3 123 300 64 233 5.21e-15 75.1
Msa1258940 MtrunA17_Chr1g0179701 27.473 182 123 4 123 298 243 421 5.34e-14 72.0
Msa1258940 MtrunA17_Chr1g0179701 28.652 178 118 5 123 298 152 322 7.42e-13 68.9
Msa1258940 MtrunA17_Chr4g0044541 29.167 168 109 3 123 289 36 194 8.09e-15 74.7
Msa1258940 MtrunA17_Chr4g0044541 27.099 262 164 9 51 298 149 397 1.16e-13 71.2
Msa1258940 MtrunA17_Chr4g0044541 29.944 177 117 5 123 298 124 294 1.96e-12 67.4
Msa1258940 MtrunA17_Chr7g0219031 36.000 100 57 2 189 282 8 106 1.80e-14 68.6
Msa1258940 MtrunA17_Chr0c09g0493511 28.191 188 119 5 123 298 120 303 1.95e-14 73.6
Msa1258940 MtrunA17_Chr0c09g0493511 30.337 178 112 6 123 298 33 200 8.89e-12 65.5
Msa1258940 MtrunA17_Chr8g0360551 29.282 181 104 4 122 292 74 240 2.66e-14 72.8
Msa1258940 MtrunA17_Chr6g0465691 29.255 188 117 5 123 298 120 303 3.99e-14 72.4
Msa1258940 MtrunA17_Chr6g0465691 28.249 177 117 5 123 298 33 200 2.83e-11 63.9
Msa1258940 MtrunA17_Chr1g0153181 26.786 168 113 3 123 289 34 192 4.24e-14 72.4
Msa1258940 MtrunA17_Chr1g0153181 29.412 187 118 4 123 298 213 396 4.04e-13 69.7
Msa1258940 MtrunA17_Chr1g0201151 27.239 268 157 8 51 298 145 394 6.53e-14 72.0
Msa1258940 MtrunA17_Chr3g0134141 26.786 168 113 3 123 289 26 184 1.03e-13 71.2
Msa1258940 MtrunA17_Chr3g0134141 31.720 186 114 4 123 298 205 387 2.58e-12 67.0
Msa1258940 MtrunA17_Chr5g0402191 29.714 175 112 5 119 292 2 166 3.93e-13 69.3
Msa1258940 MtrunA17_Chr3g0135111 26.904 197 127 4 113 295 2 195 4.48e-13 68.9
Msa1258940 MtrunA17_Chr4g0018581 42.667 75 43 0 218 292 453 527 8.58e-13 68.6
Msa1258940 MtrunA17_Chr7g0266751 34.694 98 59 1 121 213 32 129 1.67e-12 63.9
Msa1258940 MtrunA17_Chr7g0266751 32.558 86 58 0 215 300 31 116 6.20e-12 62.4
Msa1258940 MtrunA17_Chr8g0383661 26.531 196 109 7 116 290 196 377 3.39e-12 66.6
Msa1258940 MtrunA17_Chr3g0088511 41.026 78 46 0 122 199 33 110 7.63e-12 62.0
Msa1258940 MtrunA17_Chr1g0201001 40.789 76 45 0 218 293 31 106 1.49e-11 64.7
Msa1258940 MtrunA17_Chr4g0031091 30.097 103 71 1 192 294 10 111 1.62e-11 60.5
Msa1258940 MtrunA17_Chr7g0276201 28.409 176 118 5 122 293 185 356 4.02e-11 63.5
Msa1258940 MtrunA17_Chr7g0259641 27.374 179 120 4 123 294 587 762 5.22e-11 63.2
Msa1258940 MtrunA17_Chr2g0327921 37.037 81 51 0 215 295 6 86 7.21e-11 57.8
Msa1258940 MtrunA17_Chr4g0068631 29.560 159 105 4 122 279 89 241 7.77e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1258940 AT5G50250.1 58.667 300 99 6 5 298 9 289 9.94e-109 317
Msa1258940 AT4G24770.1 61.567 268 79 4 54 298 60 326 9.10e-106 311
Msa1258940 AT4G24770.2 61.567 268 79 4 54 298 60 326 9.10e-106 311
Msa1258940 AT2G37220.1 55.224 201 68 3 118 298 88 286 1.27e-64 205
Msa1258940 AT1G60000.1 41.935 217 100 3 80 295 65 256 4.28e-49 164
Msa1258940 AT3G52380.1 38.503 187 107 3 119 297 114 300 1.12e-41 147
Msa1258940 AT3G52380.1 40.230 87 52 0 122 208 220 306 4.90e-13 68.9
Msa1258940 AT3G52150.2 41.237 194 107 3 106 292 60 253 4.78e-35 127
Msa1258940 AT3G52150.2 40.000 100 56 1 199 294 55 154 2.75e-19 85.5
Msa1258940 AT3G52150.1 41.237 194 107 3 106 292 60 253 4.78e-35 127
Msa1258940 AT3G52150.1 40.000 100 56 1 199 294 55 154 2.75e-19 85.5
Msa1258940 AT2G35410.1 37.209 172 101 3 122 287 96 266 2.30e-30 116
Msa1258940 AT3G53460.1 60.976 82 32 0 217 298 258 339 1.13e-26 107
Msa1258940 AT3G53460.1 46.154 169 69 5 39 207 35 181 1.77e-24 101
Msa1258940 AT3G53460.1 47.727 88 46 0 211 298 94 181 3.11e-18 84.0
Msa1258940 AT3G53460.1 45.556 90 42 1 122 211 258 340 3.36e-18 84.0
Msa1258940 AT3G53460.3 60.976 82 32 0 217 298 258 339 1.13e-26 107
Msa1258940 AT3G53460.3 46.154 169 69 5 39 207 35 181 1.77e-24 101
Msa1258940 AT3G53460.3 47.727 88 46 0 211 298 94 181 3.11e-18 84.0
Msa1258940 AT3G53460.3 45.556 90 42 1 122 211 258 340 3.36e-18 84.0
Msa1258940 AT3G53460.2 60.976 82 32 0 217 298 258 339 1.13e-26 107
Msa1258940 AT3G53460.2 46.154 169 69 5 39 207 35 181 1.77e-24 101
Msa1258940 AT3G53460.2 47.727 88 46 0 211 298 94 181 3.11e-18 84.0
Msa1258940 AT3G53460.2 45.556 90 42 1 122 211 258 340 3.36e-18 84.0
Msa1258940 AT3G53460.4 60.976 82 32 0 217 298 279 360 1.48e-26 107
Msa1258940 AT3G53460.4 41.053 190 69 6 39 207 35 202 5.23e-20 89.4
Msa1258940 AT3G53460.4 45.556 90 42 1 122 211 279 361 3.80e-18 84.0
Msa1258940 AT3G53460.4 37.615 109 47 1 211 298 94 202 1.19e-14 73.9
Msa1258940 AT3G23830.2 55.172 87 36 1 217 300 36 122 2.31e-25 99.0
Msa1258940 AT3G23830.2 45.238 84 45 1 122 204 36 119 5.79e-14 68.2
Msa1258940 AT3G23830.1 55.172 87 36 1 217 300 36 122 2.31e-25 99.0
Msa1258940 AT3G23830.1 45.238 84 45 1 122 204 36 119 5.79e-14 68.2
Msa1258940 AT1G01080.1 33.838 198 116 4 111 295 95 290 9.68e-24 98.6
Msa1258940 AT1G01080.2 34.197 193 111 5 111 289 95 285 6.38e-23 96.3
Msa1258940 AT2G21660.2 51.948 77 37 0 217 293 9 85 5.83e-22 90.5
Msa1258940 AT2G21660.2 42.105 76 44 0 122 197 9 84 6.86e-12 63.2
Msa1258940 AT3G16380.1 35.484 186 106 5 123 298 204 385 8.00e-22 95.9
Msa1258940 AT3G16380.1 32.203 177 112 4 123 298 114 283 2.81e-14 73.6
Msa1258940 AT2G21660.1 51.948 77 37 0 217 293 9 85 8.87e-22 90.5
Msa1258940 AT2G21660.1 42.105 76 44 0 122 197 9 84 9.46e-12 63.2
Msa1258940 AT1G01080.3 34.066 182 105 4 111 279 95 274 1.12e-21 92.8
Msa1258940 AT4G13850.4 48.750 80 41 0 217 296 36 115 2.01e-21 88.2
Msa1258940 AT4G13850.3 48.750 80 41 0 217 296 36 115 3.17e-21 88.2
Msa1258940 AT4G13850.3 41.667 84 48 1 122 204 36 119 4.82e-11 60.5
Msa1258940 AT4G13850.2 48.750 80 41 0 217 296 36 115 3.99e-21 88.2
Msa1258940 AT4G13850.2 41.667 84 48 1 122 204 36 119 5.78e-11 60.5
Msa1258940 AT4G13850.1 48.750 80 41 0 217 296 36 115 4.52e-21 88.2
Msa1258940 AT4G13850.1 41.667 84 48 1 122 204 36 119 6.37e-11 60.5
Msa1258940 AT4G39260.3 47.500 80 42 0 217 296 7 86 2.30e-20 84.3
Msa1258940 AT4G39260.3 40.476 84 50 0 120 203 5 88 7.01e-15 69.3
Msa1258940 AT5G19350.1 30.303 198 111 5 112 295 12 196 3.92e-20 90.1
Msa1258940 AT5G19350.1 24.873 197 116 4 120 290 115 305 9.05e-11 62.8
Msa1258940 AT5G19350.2 30.303 198 111 5 112 295 12 196 4.18e-20 90.1
Msa1258940 AT2G18510.1 30.387 181 117 2 116 295 20 192 1.07e-19 88.6
Msa1258940 AT4G39260.2 48.052 77 40 0 217 293 7 83 1.57e-19 83.2
Msa1258940 AT4G39260.2 42.105 76 44 0 122 197 7 82 7.04e-13 65.1
Msa1258940 AT4G39260.1 48.052 77 40 0 217 293 7 83 4.56e-19 83.2
Msa1258940 AT4G39260.1 42.105 76 44 0 122 197 7 82 1.76e-12 65.1
Msa1258940 AT3G14100.1 33.898 177 107 4 116 292 54 220 5.71e-19 87.0
Msa1258940 AT3G14100.1 29.032 186 102 3 115 274 138 319 5.65e-11 63.2
Msa1258940 AT4G26650.2 29.167 192 118 5 116 292 6 194 7.72e-19 86.7
Msa1258940 AT4G26650.2 36.667 90 54 2 122 209 120 208 1.29e-11 65.1
Msa1258940 AT4G26650.1 29.167 192 118 5 116 292 9 197 8.59e-19 86.7
Msa1258940 AT4G26650.1 36.667 90 54 2 122 209 123 211 1.45e-11 65.1
Msa1258940 AT5G61030.2 45.570 79 43 0 217 295 41 119 1.78e-18 84.3
Msa1258940 AT5G61030.2 39.241 79 48 0 122 200 41 119 3.65e-12 66.2
Msa1258940 AT5G61030.1 45.570 79 43 0 217 295 41 119 1.78e-18 84.3
Msa1258940 AT5G61030.1 39.241 79 48 0 122 200 41 119 3.65e-12 66.2
Msa1258940 AT5G40490.1 28.161 174 118 3 122 295 43 209 2.55e-18 85.1
Msa1258940 AT1G22760.1 27.881 269 155 8 51 298 163 413 3.15e-18 85.5
Msa1258940 AT3G08000.1 44.444 81 45 0 217 297 42 122 7.50e-18 79.0
Msa1258940 AT1G17370.1 32.203 177 110 3 116 292 49 215 7.93e-18 83.6
Msa1258940 AT1G17370.1 28.571 203 114 5 115 290 133 331 7.65e-12 65.9
Msa1258940 AT1G17370.2 32.203 177 110 3 116 292 49 215 8.36e-18 83.6
Msa1258940 AT1G17370.2 29.000 200 114 5 115 290 133 328 7.74e-12 65.9
Msa1258940 AT3G19130.1 32.447 188 114 6 119 300 105 285 1.23e-17 83.2
Msa1258940 AT1G17640.2 28.652 178 121 3 122 299 67 238 1.54e-17 82.4
Msa1258940 AT1G17640.1 28.652 178 121 3 122 299 67 238 1.54e-17 82.4
Msa1258940 AT1G17640.3 28.652 178 121 3 122 299 67 238 1.54e-17 82.4
Msa1258940 AT5G47620.1 28.191 188 111 4 119 292 4 181 2.08e-17 82.4
Msa1258940 AT5G47620.2 28.191 188 111 4 119 292 4 181 2.08e-17 82.4
Msa1258940 AT5G47620.5 28.191 188 111 4 119 292 4 181 2.08e-17 82.4
Msa1258940 AT4G34110.1 30.357 168 107 3 123 289 38 196 2.26e-17 82.8
Msa1258940 AT4G34110.1 30.556 180 112 5 123 298 126 296 5.74e-15 75.5
Msa1258940 AT4G34110.1 26.882 186 123 4 123 298 217 399 2.20e-12 67.8
Msa1258940 AT1G49600.3 30.303 198 105 6 118 299 115 295 2.64e-17 82.0
Msa1258940 AT1G49600.3 28.497 193 113 5 116 289 208 394 1.44e-11 65.1
Msa1258940 AT1G49600.2 30.303 198 105 6 118 299 115 295 2.64e-17 82.0
Msa1258940 AT1G49600.2 28.497 193 113 5 116 289 208 394 1.44e-11 65.1
Msa1258940 AT3G07810.1 30.270 185 109 4 118 289 3 180 3.63e-17 82.0
Msa1258940 AT3G07810.1 38.318 107 63 3 104 209 92 196 1.25e-12 68.6
Msa1258940 AT3G07810.2 30.270 185 109 4 118 289 3 180 3.85e-17 82.0
Msa1258940 AT3G07810.2 38.318 107 63 3 104 209 92 196 1.41e-12 68.2
Msa1258940 AT1G49600.1 30.457 197 104 6 119 299 116 295 5.41e-17 81.3
Msa1258940 AT1G49600.1 28.497 193 113 5 116 289 208 394 1.79e-11 64.7
Msa1258940 AT5G55550.2 29.121 182 115 4 122 292 7 185 6.33e-17 81.3
Msa1258940 AT5G55550.2 40.506 79 46 1 122 200 111 188 1.04e-12 68.6
Msa1258940 AT5G55550.3 29.121 182 115 4 122 292 7 185 6.33e-17 81.3
Msa1258940 AT5G55550.3 40.506 79 46 1 122 200 111 188 1.04e-12 68.6
Msa1258940 AT5G55550.6 29.121 182 115 4 122 292 7 185 6.33e-17 81.3
Msa1258940 AT5G55550.6 40.506 79 46 1 122 200 111 188 1.04e-12 68.6
Msa1258940 AT5G55550.11 29.121 182 115 4 122 292 7 185 6.33e-17 81.3
Msa1258940 AT5G55550.11 40.506 79 46 1 122 200 111 188 1.04e-12 68.6
Msa1258940 AT1G49760.1 29.762 168 108 3 123 289 47 205 7.31e-17 81.3
Msa1258940 AT1G49760.1 28.977 176 120 3 123 298 135 305 5.57e-14 72.8
Msa1258940 AT1G49760.1 28.638 213 130 7 105 298 199 408 7.43e-12 66.2
Msa1258940 AT1G49760.2 29.762 168 108 3 123 289 47 205 7.31e-17 81.3
Msa1258940 AT1G49760.2 28.977 176 120 3 123 298 135 305 5.57e-14 72.8
Msa1258940 AT1G49760.2 28.638 213 130 7 105 298 199 408 7.43e-12 66.2
Msa1258940 AT5G54900.1 29.730 185 117 4 118 295 56 234 9.04e-17 80.5
Msa1258940 AT5G54900.1 28.191 188 116 5 114 289 147 327 1.19e-14 73.9
Msa1258940 AT5G55550.5 29.121 182 115 4 122 292 7 185 9.60e-17 80.5
Msa1258940 AT5G55550.5 40.506 79 46 1 122 200 111 188 1.08e-12 68.6
Msa1258940 AT5G55550.4 29.121 182 115 4 122 292 7 185 9.60e-17 80.5
Msa1258940 AT5G55550.4 40.506 79 46 1 122 200 111 188 1.08e-12 68.6
Msa1258940 AT5G55550.9 29.121 182 115 4 122 292 7 185 9.60e-17 80.5
Msa1258940 AT5G55550.9 40.506 79 46 1 122 200 111 188 1.08e-12 68.6
Msa1258940 AT5G55550.7 29.121 182 115 4 122 292 7 185 9.60e-17 80.5
Msa1258940 AT5G55550.7 40.506 79 46 1 122 200 111 188 1.08e-12 68.6
Msa1258940 AT5G55550.1 29.121 182 115 4 122 292 7 185 9.60e-17 80.5
Msa1258940 AT5G55550.1 40.506 79 46 1 122 200 111 188 1.08e-12 68.6
Msa1258940 AT3G13224.3 26.257 179 125 4 122 300 11 182 1.08e-16 79.7
Msa1258940 AT1G71770.1 30.645 186 116 4 123 298 241 423 1.20e-16 80.5
Msa1258940 AT1G71770.1 30.978 184 118 4 123 300 148 328 8.23e-15 75.1
Msa1258940 AT1G71770.2 30.645 186 116 4 123 298 241 423 1.20e-16 80.5
Msa1258940 AT1G71770.2 30.978 184 118 4 123 300 148 328 8.23e-15 75.1
Msa1258940 AT3G13224.2 26.257 179 125 4 122 300 20 191 2.66e-16 78.6
Msa1258940 AT3G13224.1 27.273 154 107 2 122 275 20 168 3.16e-16 76.6
Msa1258940 AT1G74230.1 47.436 78 40 1 217 294 35 111 3.40e-16 77.8
Msa1258940 AT1G54080.1 30.508 177 113 4 116 292 58 224 3.56e-16 79.0
Msa1258940 AT1G11650.1 29.213 178 115 4 123 295 64 235 4.10e-16 77.8
Msa1258940 AT1G47490.2 30.978 184 115 5 119 295 99 277 4.57e-16 77.4
Msa1258940 AT1G34140.1 31.892 185 110 5 123 295 121 301 5.05e-16 78.2
Msa1258940 AT1G34140.1 30.899 178 113 5 123 299 33 201 4.44e-12 66.6
Msa1258940 AT1G47500.2 29.648 199 108 6 119 300 101 284 5.83e-16 77.4
Msa1258940 AT1G11650.2 29.213 178 115 4 123 295 64 235 8.09e-16 77.8
Msa1258940 AT1G11650.2 27.419 186 114 4 118 290 152 329 3.81e-12 66.6
Msa1258940 AT4G14300.1 30.108 186 116 4 118 292 3 185 1.54e-15 77.0
Msa1258940 AT4G14300.2 30.108 186 116 4 118 292 3 185 1.54e-15 77.0
Msa1258940 AT1G47490.1 30.811 185 116 5 118 295 98 277 1.87e-15 76.6
Msa1258940 AT1G47490.1 27.586 203 125 5 114 300 190 386 5.28e-15 75.5
Msa1258940 AT1G47500.1 28.079 203 124 5 114 300 192 388 1.90e-15 76.6
Msa1258940 AT1G47500.1 30.256 195 104 6 118 295 100 279 2.54e-15 76.3
Msa1258940 AT5G40490.2 27.097 155 106 3 141 295 45 192 2.20e-15 76.3
Msa1258940 AT4G27000.1 29.508 183 108 4 123 295 82 253 3.02e-15 75.9
Msa1258940 AT2G36660.1 25.468 267 162 8 52 300 140 387 3.28e-15 76.3
Msa1258940 AT4G36960.1 30.994 171 109 5 122 292 4 165 3.34e-15 75.5
Msa1258940 AT4G36960.2 30.994 171 109 5 122 292 4 165 3.34e-15 75.5
Msa1258940 AT3G26420.1 42.308 78 45 0 216 293 7 84 4.31e-15 73.9
Msa1258940 AT3G26420.1 33.654 104 65 2 115 216 3 104 3.69e-11 62.4
Msa1258940 AT5G06210.1 35.789 95 54 1 122 209 35 129 5.58e-15 71.2
Msa1258940 AT5G06210.1 36.709 79 50 0 217 295 35 113 3.71e-12 63.5
Msa1258940 AT1G54080.2 30.387 181 112 5 116 292 58 228 7.15e-15 75.1
Msa1258940 AT3G15010.1 31.818 176 93 6 122 283 76 238 9.11e-15 74.7
Msa1258940 AT3G15010.2 31.818 176 93 6 122 283 76 238 9.11e-15 74.7
Msa1258940 AT2G23350.1 30.357 168 107 3 123 289 48 206 1.40e-14 74.3
Msa1258940 AT2G23350.1 30.645 186 116 4 123 298 227 409 4.40e-14 72.8
Msa1258940 AT2G23350.1 29.213 178 121 3 123 300 136 308 5.63e-13 69.7
Msa1258940 AT5G47320.1 45.000 80 44 0 217 296 32 111 1.41e-14 71.6
Msa1258940 AT4G09040.1 28.261 184 115 5 115 289 88 263 1.63e-14 73.2
Msa1258940 AT4G09040.2 28.249 177 110 5 122 289 35 203 1.73e-14 72.0
Msa1258940 AT1G60650.2 41.558 77 45 0 217 293 13 89 2.33e-14 72.4
Msa1258940 AT1G60650.2 36.709 79 50 0 122 200 13 91 2.44e-12 66.6
Msa1258940 AT1G60650.1 41.558 77 45 0 217 293 13 89 2.33e-14 72.4
Msa1258940 AT1G60650.1 36.709 79 50 0 122 200 13 91 2.44e-12 66.6
Msa1258940 AT4G13860.1 46.667 75 40 0 217 291 4 78 2.94e-14 67.4
Msa1258940 AT4G13860.1 45.205 73 40 0 122 194 4 76 4.49e-11 58.9
Msa1258940 AT2G33410.1 29.032 186 118 4 118 292 3 185 6.66e-14 72.0
Msa1258940 AT5G47620.4 25.714 210 110 5 119 292 4 203 6.96e-14 72.0
Msa1258940 AT5G19960.1 43.038 79 44 1 212 290 3 80 8.31e-14 71.2
Msa1258940 AT3G46020.1 41.558 77 45 0 217 293 8 84 8.76e-14 66.6
Msa1258940 AT4G39260.4 45.161 62 34 0 217 278 7 68 2.20e-13 65.9
Msa1258940 AT5G55550.10 40.506 79 46 1 122 200 158 235 8.98e-13 68.9
Msa1258940 AT5G55550.8 40.506 79 46 1 122 200 158 235 9.01e-13 68.9
Msa1258940 AT2G21690.1 36.957 92 53 1 211 297 2 93 1.66e-12 63.5
Msa1258940 AT1G48920.1 29.630 189 112 7 123 296 299 481 3.40e-12 67.0
Msa1258940 AT1G18630.1 42.857 77 44 0 217 293 37 113 4.52e-12 63.5
Msa1258940 AT5G04280.1 38.554 83 51 0 211 293 2 84 5.02e-12 65.9
Msa1258940 AT5G59865.1 35.417 96 57 2 208 300 15 108 9.14e-12 61.6
Msa1258940 AT5G09880.1 26.111 180 127 4 116 290 162 340 2.68e-11 64.3
Msa1258940 AT3G18610.2 29.891 184 114 7 123 299 326 501 2.81e-11 64.3
Msa1258940 AT3G18610.3 29.891 184 114 7 123 299 356 531 3.30e-11 64.3
Msa1258940 AT3G18610.1 29.891 184 114 7 123 299 386 561 3.97e-11 63.9
Msa1258940 AT2G41060.1 28.125 192 120 8 119 298 123 308 7.40e-11 62.8
Msa1258940 AT2G41060.3 28.125 192 120 8 119 298 123 308 7.40e-11 62.8
Msa1258940 AT2G41060.2 28.125 192 120 8 119 298 123 308 7.40e-11 62.8
Msa1258940 AT5G51300.1 35.227 88 57 0 205 292 469 556 8.79e-11 63.2
Msa1258940 AT5G51300.2 35.227 88 57 0 205 292 469 556 8.79e-11 63.2
Msa1258940 AT5G51300.3 35.227 88 57 0 205 292 469 556 8.79e-11 63.2

Find 111 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCCTTTATTTCTCCCTTT+GGG 0.188674 8_2:-60240128 Msa1258940:three_prime_UTR
CCACCACGTGCCTTTAATTC+CGG 0.221097 8_2:-60240962 Msa1258940:CDS
GACTCTTAACCCGGAATTAA+AGG 0.236122 8_2:+60240952 None:intergenic
GATTTCAGGTAATTTATAAT+AGG 0.246037 8_2:-60242144 Msa1258940:intron
CACCCCAAAGGGAGAAATAA+AGG 0.286512 8_2:+60240125 None:intergenic
ACCGGTCGATCACGTGGTTT+TGG 0.287148 8_2:-60240827 Msa1258940:CDS
AAGATTGTTGACGGTTAATA+AGG 0.297325 8_2:-60241017 Msa1258940:CDS
ATTAGAGATGAATGGGGATT+TGG 0.306136 8_2:+60242758 None:intergenic
TTCAGAAGGTTCTTCAAAAC+TGG 0.313144 8_2:+60242503 None:intergenic
AAACCCTTTATTTCTCCCTT+TGG 0.315859 8_2:-60240129 Msa1258940:three_prime_UTR
TGATGTTGATAGTGAGAAAT+TGG 0.321993 8_2:-60242448 Msa1258940:CDS
ACTATCGTTGTTTGTGGATA+AGG 0.330907 8_2:+60242897 None:intergenic
TGTGAAACCAGCGGCCAAAA+AGG 0.333156 8_2:+60240438 None:intergenic
ATTTCAGGTAATTTATAATA+GGG 0.339616 8_2:-60242143 Msa1258940:intron
GATGAATGGGGATTTGGATT+TGG 0.358060 8_2:+60242764 None:intergenic
CCAGTAAGCTGCCTGCGTTT+TGG 0.368147 8_2:+60240071 None:intergenic
GACATCTGACTGGGCTCAAC+AGG 0.368726 8_2:-60242616 Msa1258940:CDS
GTAATAATGTAACAACTAAC+TGG 0.385029 8_2:+60240289 None:intergenic
TTGCACTCAGAAAGAGCGCC+TGG 0.386784 8_2:+60240549 None:intergenic
TAAATGACCTCGCGAGAAAC+AGG 0.395525 8_2:+60240241 None:intergenic
GTGATAGACATAGCAGGTTA+AGG 0.396838 8_2:+60242849 None:intergenic
CTATCGTTGTTTGTGGATAA+GGG 0.397873 8_2:+60242898 None:intergenic
CACCACGTGCCTTTAATTCC+GGG 0.401106 8_2:-60240961 Msa1258940:CDS
TTGTTGCACGGACATCTGAC+TGG 0.401168 8_2:-60242626 Msa1258940:CDS
CACAACACTATCGTTGTTTG+TGG 0.403824 8_2:+60242891 None:intergenic
TAACTTAACCGTTCAGCCTT+TGG 0.406176 8_2:-60240214 Msa1258940:three_prime_UTR
TCAGGCCGTGGTGCTCCTCT+TGG 0.412575 8_2:+60240989 None:intergenic
CGTGGTGGGCGCTCAGGCCG+TGG 0.417711 8_2:+60240977 None:intergenic
TGCCATTGTGAGAGATTTGA+AGG 0.418652 8_2:+60242824 None:intergenic
TGGCTGAATTAGAGATGAAT+GGG 0.428229 8_2:+60242751 None:intergenic
GATGCCATTGCTGCTCTTGA+CGG 0.429405 8_2:-60240770 Msa1258940:CDS
AGAATGGCGGGTTCTTCTCT+TGG 0.430248 8_2:+60242662 None:intergenic
ACCAGAGTTGTCATTGAGTT+GGG 0.439674 8_2:-60240157 Msa1258940:three_prime_UTR
ATGTCACCTAGCAGTGGAAT+TGG 0.440305 8_2:-60240312 Msa1258940:three_prime_UTR
TGAACTTAAACTTTATAAGT+AGG 0.443611 8_2:+60240351 None:intergenic
CATTGCTGCTCTTGACGGTC+AGG 0.446304 8_2:-60240765 Msa1258940:intron
TTGGTACACTGTTCGAGACT+TGG 0.449405 8_2:-60240195 Msa1258940:three_prime_UTR
TTGGCTGAATTAGAGATGAA+TGG 0.450753 8_2:+60242750 None:intergenic
ACCCCAAAGGGAGAAATAAA+GGG 0.454708 8_2:+60240126 None:intergenic
AAGGCACGTGGTGGGCGCTC+AGG 0.460135 8_2:+60240971 None:intergenic
AATTTAGAAGAATTGTAAGA+TGG 0.465429 8_2:+60242708 None:intergenic
TTCTCACTATCAACATCAAA+AGG 0.466331 8_2:+60242453 None:intergenic
ACCCTTTATTTCTCCCTTTG+GGG 0.466732 8_2:-60240127 Msa1258940:three_prime_UTR
TGATAGACATAGCAGGTTAA+GGG 0.469297 8_2:+60242850 None:intergenic
ACTGACAGAAGTCGTGGGTT+CGG 0.474290 8_2:-60242118 Msa1258940:CDS
AGAATCAAGCGGATGCTACA+TGG 0.475835 8_2:-60242566 Msa1258940:CDS
ATTTAGAAGAATTGTAAGAT+GGG 0.486739 8_2:+60242709 None:intergenic
ATGGTAAGGTTGAGAGTGCT+CGG 0.500904 8_2:-60240868 Msa1258940:CDS
AGAAGGAAGATGGTGCTACA+TGG 0.505576 8_2:-60242590 Msa1258940:CDS
ACATAGCAGGTTAAGGGATG+AGG 0.508118 8_2:+60242856 None:intergenic
GCCAAAACCACGTGATCGAC+CGG 0.510620 8_2:+60240826 None:intergenic
CACCAGAGTTGTCATTGAGT+TGG 0.512044 8_2:-60240158 Msa1258940:three_prime_UTR
TGTTGCAGAGCTTGGATGGA+AGG 0.517845 8_2:-60240603 Msa1258940:intron
GGACGTTGACAATTCTAGCT+TGG 0.523595 8_2:-60240909 Msa1258940:CDS
TTTGTGTGACAGGAATTAGA+TGG 0.524441 8_2:-60241040 Msa1258940:intron
CAAGCGGATGCTACATGGGT+TGG 0.526184 8_2:-60242561 Msa1258940:CDS
CTTTCGTTACATTTGTTGCA+CGG 0.531665 8_2:-60242638 Msa1258940:CDS
ATTAGATGGAAGATTGTTGA+CGG 0.532874 8_2:-60241026 Msa1258940:CDS
AGGTTAAGGGATGAGGAGAA+AGG 0.540097 8_2:+60242863 None:intergenic
TCTTGACATATCACCCCAAA+GGG 0.542123 8_2:+60240114 None:intergenic
TTTATGTTGCAGAGCTTGGA+TGG 0.542421 8_2:-60240607 Msa1258940:intron
GTTGCAGAGCTTGGATGGAA+GGG 0.550513 8_2:-60240602 Msa1258940:intron
CAAATGTAACGAAAGAAGAA+TGG 0.552797 8_2:+60242646 None:intergenic
AAAATCTTCAAATCTTCAGA+AGG 0.556211 8_2:+60242489 None:intergenic
CTGGGCTCAACAGGAAGAGA+AGG 0.560096 8_2:-60242607 Msa1258940:CDS
CAACAGGAAGAGAAGGAAGA+TGG 0.562683 8_2:-60242600 Msa1258940:CDS
GAGTGAATGTTGCTGAGGAA+AGG 0.566504 8_2:-60240573 Msa1258940:CDS
TCTATGTTGGTAACTTGCCA+TGG 0.567162 8_2:-60240931 Msa1258940:CDS
TGTTGCACGGACATCTGACT+GGG 0.567929 8_2:-60242625 Msa1258940:CDS
CTGACCGTCAAGAGCAGCAA+TGG 0.575843 8_2:+60240766 None:intergenic
TGTAACGAAAGAAGAATGGC+GGG 0.581991 8_2:+60242650 None:intergenic
GAAGGAAGATGGTGCTACAT+GGG 0.582115 8_2:-60242589 Msa1258940:CDS
AAGGAAGTGATAGACATAGC+AGG 0.583454 8_2:+60242843 None:intergenic
GATTTGGTGTAGAAGAGTGA+AGG 0.586581 8_2:+60242780 None:intergenic
TGCACTCAGAAAGAGCGCCT+GGG 0.586838 8_2:+60240550 None:intergenic
CGGAATTAAAGGCACGTGGT+GGG 0.588703 8_2:+60240963 None:intergenic
AGGGACACTGACAGAAGTCG+TGG 0.593858 8_2:-60242124 Msa1258940:CDS
TGGTAAGGTTGAGAGTGCTC+GGG 0.596060 8_2:-60240867 Msa1258940:CDS
GAATCAAGCGGATGCTACAT+GGG 0.596208 8_2:-60242565 Msa1258940:CDS
CTAGAATTGTCAACGTCCCA+TGG 0.600424 8_2:+60240914 None:intergenic
GCCCAACTCAATGACAACTC+TGG 0.604942 8_2:+60240156 None:intergenic
CACCTAGCCTGTTTCTCGCG+AGG 0.605897 8_2:-60240248 Msa1258940:three_prime_UTR
ACCAACATAGACTCTTAACC+CGG 0.608783 8_2:+60240943 None:intergenic
ATGTTGCTGAGGAAAGGCCC+AGG 0.609601 8_2:-60240567 Msa1258940:CDS
CTATGTTGGTAACTTGCCAT+GGG 0.609681 8_2:-60240930 Msa1258940:CDS
GTTAATAAGGCCGCTCCAAG+AGG 0.610797 8_2:-60241004 Msa1258940:CDS
ATCTTGACATATCACCCCAA+AGG 0.612991 8_2:+60240113 None:intergenic
GTAGTCTATGACAGAGAGAC+CGG 0.616568 8_2:-60240845 Msa1258940:CDS
AACTGGCCAATTCCACTGCT+AGG 0.617749 8_2:+60240306 None:intergenic
CCGGAATTAAAGGCACGTGG+TGG 0.624652 8_2:+60240962 None:intergenic
GGCTGAATTAGAGATGAATG+GGG 0.625557 8_2:+60242752 None:intergenic
TCCGGGTTAAGAGTCTATGT+TGG 0.627644 8_2:-60240944 Msa1258940:CDS
CCGTGGTGCTCCTCTTGGAG+CGG 0.632907 8_2:+60240994 None:intergenic
ATGTAACGAAAGAAGAATGG+CGG 0.637032 8_2:+60242649 None:intergenic
AATCCGCCTCTCCAAAACGC+AGG 0.639400 8_2:-60240082 None:intergenic
GGTGACATTCAAAAGTTAGA+CGG 0.641593 8_2:+60240267 None:intergenic
AGTCTCGAACAGTGTACCAA+AGG 0.644765 8_2:+60240198 None:intergenic
CTTTGTTACAATGAGCAATG+AGG 0.656628 8_2:-60240804 Msa1258940:CDS
AGAGAGACCGGTCGATCACG+TGG 0.657027 8_2:-60240833 Msa1258940:CDS
ACAGTGTACCAAAGGCTGAA+CGG 0.658067 8_2:+60240206 None:intergenic
AATTAGAGTGAATGTTGCTG+AGG 0.660198 8_2:-60240578 Msa1258940:CDS
TTCCTTCAAATCTCTCACAA+TGG 0.661785 8_2:-60242826 Msa1258940:CDS
CAAATCTAATGTGAAACCAG+CGG 0.671223 8_2:+60240429 None:intergenic
AGAGCTGTGAACAAATTCAG+TGG 0.671971 8_2:-60242061 Msa1258940:CDS
CAACTCAATGACAACTCTGG+TGG 0.674384 8_2:+60240159 None:intergenic
TGCTACATGGGAGAATCAAG+CGG 0.674549 8_2:-60242577 Msa1258940:CDS
GACCTCGCGAGAAACAGGCT+AGG 0.695376 8_2:+60240246 None:intergenic
CCGCTCCAAGAGGAGCACCA+CGG 0.696609 8_2:-60240994 Msa1258940:CDS
AACCCGGAATTAAAGGCACG+TGG 0.703447 8_2:+60240959 None:intergenic
GGGACACTGACAGAAGTCGT+GGG 0.707773 8_2:-60242123 Msa1258940:CDS
TGGGACTGTTGAGATTGCTG+AGG 0.714996 8_2:-60242406 Msa1258940:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTGTTTTTCAAAAAATTA+AGG + chr8_2:60241194-60241213 None:intergenic 10.0%
!! AGAAATATTAATAATATACA+TGG + chr8_2:60241906-60241925 None:intergenic 10.0%
!!! ATTTCAGGTAATTTATAATA+GGG - chr8_2:60240876-60240895 Msa1258940:CDS 15.0%
!! AAAACAAATAAATTTGTACA+TGG - chr8_2:60241205-60241224 Msa1258940:intron 15.0%
!!! AATGTCATTTACATTTATAT+TGG - chr8_2:60241437-60241456 Msa1258940:intron 15.0%
!!! ATTGTTTTGAGATATATATT+CGG - chr8_2:60242633-60242652 Msa1258940:CDS 15.0%
!! ATTTAGAAGAATTGTAAGAT+GGG + chr8_2:60240313-60240332 None:intergenic 20.0%
!! AATTTAGAAGAATTGTAAGA+TGG + chr8_2:60240314-60240333 None:intergenic 20.0%
!!! AAGATTTGAAGATTTTTGTT+GGG - chr8_2:60240537-60240556 Msa1258940:exon 20.0%
!! ATTGATGTTATGTTGAATTA+TGG - chr8_2:60240753-60240772 Msa1258940:intron 20.0%
!! AAAAAAAACACTCTAAATTG+TGG - chr8_2:60240778-60240797 Msa1258940:CDS 20.0%
!!! GATTTCAGGTAATTTATAAT+AGG - chr8_2:60240875-60240894 Msa1258940:CDS 20.0%
!! TTAAGACTAAAACTTGTAAT+TGG - chr8_2:60241640-60241659 Msa1258940:intron 20.0%
!!! TTTTCTAATTGTTCTTTATG+TGG - chr8_2:60241925-60241944 Msa1258940:intron 20.0%
!! TATATGTTTGTATCATTACA+AGG - chr8_2:60242371-60242390 Msa1258940:intron 20.0%
!!! TATTTTCAAATGTTCCTTTT+TGG - chr8_2:60242567-60242586 Msa1258940:CDS 20.0%
!! TGAACTTAAACTTTATAAGT+AGG + chr8_2:60242671-60242690 None:intergenic 20.0%
! AAAATCTTCAAATCTTCAGA+AGG + chr8_2:60240533-60240552 None:intergenic 25.0%
!! GAAGATTTGAAGATTTTTGT+TGG - chr8_2:60240536-60240555 Msa1258940:exon 25.0%
! ATTCTCTAACAATTACGAAA+TGG + chr8_2:60240676-60240695 None:intergenic 25.0%
! AAACGGTAAAACGATATAAA+GGG + chr8_2:60240998-60241017 None:intergenic 25.0%
! TGACTTCATTGATAAAACTT+TGG - chr8_2:60241077-60241096 Msa1258940:intron 25.0%
! ACTTTGGTATTATAACCTTA+AGG - chr8_2:60241093-60241112 Msa1258940:intron 25.0%
!!! ATGCATTATTAGTCATTTTG+AGG - chr8_2:60241521-60241540 Msa1258940:intron 25.0%
!! ACAATGCTTCAAGATTTTAA+CGG - chr8_2:60241596-60241615 Msa1258940:intron 25.0%
!! GTTGTCTGATTTCTTTTTAA+CGG - chr8_2:60242515-60242534 Msa1258940:CDS 25.0%
! GTAATAATGTAACAACTAAC+TGG + chr8_2:60242733-60242752 None:intergenic 25.0%
CAAATGTAACGAAAGAAGAA+TGG + chr8_2:60240376-60240395 None:intergenic 30.0%
TTCTCACTATCAACATCAAA+AGG + chr8_2:60240569-60240588 None:intergenic 30.0%
!! TGATGTTGATAGTGAGAAAT+TGG - chr8_2:60240571-60240590 Msa1258940:CDS 30.0%
AACGGTAAAACGATATAAAG+GGG + chr8_2:60240997-60241016 None:intergenic 30.0%
CAAACGGTAAAACGATATAA+AGG + chr8_2:60240999-60241018 None:intergenic 30.0%
GAATTTGAACTTTGTCCTTA+AGG + chr8_2:60241111-60241130 None:intergenic 30.0%
!!! TTCTCATGTTTTGTTTCTGT+TGG + chr8_2:60241299-60241318 None:intergenic 30.0%
ATGACATTCTTCTTCGTAAA+AGG + chr8_2:60241425-60241444 None:intergenic 30.0%
!!! ATTATTAGTCATTTTGAGGC+TGG - chr8_2:60241525-60241544 Msa1258940:intron 30.0%
! CTTAACATTTTACCAACTCA+TGG + chr8_2:60241625-60241644 None:intergenic 30.0%
GGAACAAAATTTCAAAGACT+TGG + chr8_2:60241783-60241802 None:intergenic 30.0%
AATGCAGAAAAGTAACATGA+AGG - chr8_2:60241877-60241896 Msa1258940:intron 30.0%
!! TGTGGTTTGTGTAATTGTTT+TGG - chr8_2:60241943-60241962 Msa1258940:intron 30.0%
ATTAGATGGAAGATTGTTGA+CGG - chr8_2:60241993-60242012 Msa1258940:intron 30.0%
AAGATTGTTGACGGTTAATA+AGG - chr8_2:60242002-60242021 Msa1258940:intron 30.0%
! TTTGAGACAATGTTATGAAG+AGG - chr8_2:60242346-60242365 Msa1258940:intron 30.0%
! AATTTTTATGTTGCAGAGCT+TGG - chr8_2:60242408-60242427 Msa1258940:CDS 30.0%
! TGATTTCTTTTTAACGGCTA+AGG - chr8_2:60242521-60242540 Msa1258940:CDS 30.0%
CTATCGTTGTTTGTGGATAA+GGG + chr8_2:60240124-60240143 None:intergenic 35.0%
ACTATCGTTGTTTGTGGATA+AGG + chr8_2:60240125-60240144 None:intergenic 35.0%
TGATAGACATAGCAGGTTAA+GGG + chr8_2:60240172-60240191 None:intergenic 35.0%
TTCCTTCAAATCTCTCACAA+TGG - chr8_2:60240193-60240212 Msa1258940:three_prime_UTR 35.0%
ATTAGAGATGAATGGGGATT+TGG + chr8_2:60240264-60240283 None:intergenic 35.0%
TGGCTGAATTAGAGATGAAT+GGG + chr8_2:60240271-60240290 None:intergenic 35.0%
TTGGCTGAATTAGAGATGAA+TGG + chr8_2:60240272-60240291 None:intergenic 35.0%
!!! GTTTTGAAGTTTGAAGGGTT+TGG + chr8_2:60240291-60240310 None:intergenic 35.0%
!!! GATGGGTTTTGAAGTTTGAA+GGG + chr8_2:60240296-60240315 None:intergenic 35.0%
!!! AGATGGGTTTTGAAGTTTGA+AGG + chr8_2:60240297-60240316 None:intergenic 35.0%
ATGTAACGAAAGAAGAATGG+CGG + chr8_2:60240373-60240392 None:intergenic 35.0%
! CTTTCGTTACATTTGTTGCA+CGG - chr8_2:60240381-60240400 Msa1258940:three_prime_UTR 35.0%
TTCAGAAGGTTCTTCAAAAC+TGG + chr8_2:60240519-60240538 None:intergenic 35.0%
! GACAACTGTTTTGTGATTTC+AGG - chr8_2:60240861-60240880 Msa1258940:CDS 35.0%
GGACAAAGTTCAAATTCTCT+CGG - chr8_2:60241114-60241133 Msa1258940:intron 35.0%
GACAAAGTTCAAATTCTCTC+GGG - chr8_2:60241115-60241134 Msa1258940:intron 35.0%
ACAAAGTTCAAATTCTCTCG+GGG - chr8_2:60241116-60241135 Msa1258940:intron 35.0%
!!! TCATGTTTTGTTTCTGTTGG+CGG + chr8_2:60241296-60241315 None:intergenic 35.0%
! ATCCTACACATACTTTGAAG+TGG - chr8_2:60241323-60241342 Msa1258940:intron 35.0%
TTCCACTTCAAAGTATGTGT+AGG + chr8_2:60241328-60241347 None:intergenic 35.0%
ACATCACAGCATCAATTTAG+AGG + chr8_2:60241485-60241504 None:intergenic 35.0%
CTGTGATGTATTCATGAGAA+GGG - chr8_2:60241496-60241515 Msa1258940:intron 35.0%
ATTGTACTACGATTAGAGCA+AGG + chr8_2:60241581-60241600 None:intergenic 35.0%
!! ATGCTTCAAGATTTTAACGG+TGG - chr8_2:60241599-60241618 Msa1258940:intron 35.0%
!! TAATTGGTAGTTTTTGCCTC+TGG - chr8_2:60241656-60241675 Msa1258940:intron 35.0%
TCTAATCATCAAATGTCCAG+AGG + chr8_2:60241675-60241694 None:intergenic 35.0%
CCATCTTCAAACAAAGTGAT+AGG + chr8_2:60241804-60241823 None:intergenic 35.0%
! CCTATCACTTTGTTTGAAGA+TGG - chr8_2:60241801-60241820 Msa1258940:intron 35.0%
! ACACTTTTGTACATGCAGAA+AGG + chr8_2:60241830-60241849 None:intergenic 35.0%
TAATTCATCCTTTGTGTGAC+AGG - chr8_2:60241969-60241988 Msa1258940:intron 35.0%
ATCTAATTCCTGTCACACAA+AGG + chr8_2:60241980-60241999 None:intergenic 35.0%
TTTGTGTGACAGGAATTAGA+TGG - chr8_2:60241979-60241998 Msa1258940:intron 35.0%
CTTTGTTACAATGAGCAATG+AGG - chr8_2:60242215-60242234 Msa1258940:intron 35.0%
AATTAGAGTGAATGTTGCTG+AGG - chr8_2:60242441-60242460 Msa1258940:CDS 35.0%
CAAATCTAATGTGAAACCAG+CGG + chr8_2:60242593-60242612 None:intergenic 35.0%
GGTGACATTCAAAAGTTAGA+CGG + chr8_2:60242755-60242774 None:intergenic 35.0%
! AAACCCTTTATTTCTCCCTT+TGG - chr8_2:60242890-60242909 Msa1258940:five_prime_UTR 35.0%
! AACCCTTTATTTCTCCCTTT+GGG - chr8_2:60242891-60242910 Msa1258940:five_prime_UTR 35.0%
CACAACACTATCGTTGTTTG+TGG + chr8_2:60240131-60240150 None:intergenic 40.0%
GTGATAGACATAGCAGGTTA+AGG + chr8_2:60240173-60240192 None:intergenic 40.0%
AAGGAAGTGATAGACATAGC+AGG + chr8_2:60240179-60240198 None:intergenic 40.0%
TGCCATTGTGAGAGATTTGA+AGG + chr8_2:60240198-60240217 None:intergenic 40.0%
!! GATTTGGTGTAGAAGAGTGA+AGG + chr8_2:60240242-60240261 None:intergenic 40.0%
GATGAATGGGGATTTGGATT+TGG + chr8_2:60240258-60240277 None:intergenic 40.0%
GGCTGAATTAGAGATGAATG+GGG + chr8_2:60240270-60240289 None:intergenic 40.0%
TGTAACGAAAGAAGAATGGC+GGG + chr8_2:60240372-60240391 None:intergenic 40.0%
!! CTCAGCTTTTTGAGCAATCT+GGG - chr8_2:60240594-60240613 Msa1258940:CDS 40.0%
AGAGCTGTGAACAAATTCAG+TGG - chr8_2:60240958-60240977 Msa1258940:CDS 40.0%
!!! CATGTTTTGTTTCTGTTGGC+GGG + chr8_2:60241295-60241314 None:intergenic 40.0%
GCTGTGATGTATTCATGAGA+AGG - chr8_2:60241495-60241514 Msa1258940:intron 40.0%
GACTCTTAACCCGGAATTAA+AGG + chr8_2:60242070-60242089 None:intergenic 40.0%
ACCAACATAGACTCTTAACC+CGG + chr8_2:60242079-60242098 None:intergenic 40.0%
!! TCTATGTTGGTAACTTGCCA+TGG - chr8_2:60242088-60242107 Msa1258940:CDS 40.0%
!! CTATGTTGGTAACTTGCCAT+GGG - chr8_2:60242089-60242108 Msa1258940:CDS 40.0%
! ACTTTTCAGCGAACATGGTA+AGG - chr8_2:60242137-60242156 Msa1258940:CDS 40.0%
ATTCGTAACATACCATGCGT+TGG - chr8_2:60242305-60242324 Msa1258940:intron 40.0%
! TAACATACCATGCGTTGGTA+TGG - chr8_2:60242310-60242329 Msa1258940:intron 40.0%
TTTATGTTGCAGAGCTTGGA+TGG - chr8_2:60242412-60242431 Msa1258940:CDS 40.0%
! TTTTGAATGTCACCTAGCAG+TGG - chr8_2:60242701-60242720 Msa1258940:CDS 40.0%
TAACTTAACCGTTCAGCCTT+TGG - chr8_2:60242805-60242824 Msa1258940:CDS 40.0%
ACCAGAGTTGTCATTGAGTT+GGG - chr8_2:60242862-60242881 Msa1258940:five_prime_UTR 40.0%
! ACCCTTTATTTCTCCCTTTG+GGG - chr8_2:60242892-60242911 Msa1258940:five_prime_UTR 40.0%
ACCCCAAAGGGAGAAATAAA+GGG + chr8_2:60242896-60242915 None:intergenic 40.0%
TCTTGACATATCACCCCAAA+GGG + chr8_2:60242908-60242927 None:intergenic 40.0%
ATCTTGACATATCACCCCAA+AGG + chr8_2:60242909-60242928 None:intergenic 40.0%
AGGTTAAGGGATGAGGAGAA+AGG + chr8_2:60240159-60240178 None:intergenic 45.0%
ACATAGCAGGTTAAGGGATG+AGG + chr8_2:60240166-60240185 None:intergenic 45.0%
CAACAGGAAGAGAAGGAAGA+TGG - chr8_2:60240419-60240438 Msa1258940:three_prime_UTR 45.0%
!! AGAAGGAAGATGGTGCTACA+TGG - chr8_2:60240429-60240448 Msa1258940:three_prime_UTR 45.0%
!! GAAGGAAGATGGTGCTACAT+GGG - chr8_2:60240430-60240449 Msa1258940:three_prime_UTR 45.0%
TGCTACATGGGAGAATCAAG+CGG - chr8_2:60240442-60240461 Msa1258940:three_prime_UTR 45.0%
AGAATCAAGCGGATGCTACA+TGG - chr8_2:60240453-60240472 Msa1258940:three_prime_UTR 45.0%
GAATCAAGCGGATGCTACAT+GGG - chr8_2:60240454-60240473 Msa1258940:three_prime_UTR 45.0%
!! GCTCAGCTTTTTGAGCAATC+TGG - chr8_2:60240593-60240612 Msa1258940:CDS 45.0%
!! TCAGCGCTGATTCAGTCAAA+CGG + chr8_2:60241015-60241034 None:intergenic 45.0%
GCAGCTAGCAAATGCAACTT+AGG + chr8_2:60241246-60241265 None:intergenic 45.0%
!!! TTTTGTTTCTGTTGGCGGGT+GGG + chr8_2:60241291-60241310 None:intergenic 45.0%
!! GAGCAAGGCATTGTTAGAAC+AGG + chr8_2:60241566-60241585 None:intergenic 45.0%
! TTTTAACGGTGGCCATGAGT+TGG - chr8_2:60241610-60241629 Msa1258940:intron 45.0%
TCCGGGTTAAGAGTCTATGT+TGG - chr8_2:60242075-60242094 Msa1258940:CDS 45.0%
CTAGAATTGTCAACGTCCCA+TGG + chr8_2:60242108-60242127 None:intergenic 45.0%
! GGACGTTGACAATTCTAGCT+TGG - chr8_2:60242110-60242129 Msa1258940:CDS 45.0%
! GAGCAACTTTTCAGCGAACA+TGG - chr8_2:60242132-60242151 Msa1258940:CDS 45.0%
!! ATGGTAAGGTTGAGAGTGCT+CGG - chr8_2:60242151-60242170 Msa1258940:intron 45.0%
GTAGTCTATGACAGAGAGAC+CGG - chr8_2:60242174-60242193 Msa1258940:intron 45.0%
GAGTGAATGTTGCTGAGGAA+AGG - chr8_2:60242446-60242465 Msa1258940:CDS 45.0%
!! AAATGTTCCTTTTTGGCCGC+TGG - chr8_2:60242574-60242593 Msa1258940:CDS 45.0%
ATGTCACCTAGCAGTGGAAT+TGG - chr8_2:60242707-60242726 Msa1258940:CDS 45.0%
TAAATGACCTCGCGAGAAAC+AGG + chr8_2:60242781-60242800 None:intergenic 45.0%
ACAGTGTACCAAAGGCTGAA+CGG + chr8_2:60242816-60242835 None:intergenic 45.0%
AGTCTCGAACAGTGTACCAA+AGG + chr8_2:60242824-60242843 None:intergenic 45.0%
TTGGTACACTGTTCGAGACT+TGG - chr8_2:60242824-60242843 Msa1258940:CDS 45.0%
CAACTCAATGACAACTCTGG+TGG + chr8_2:60242863-60242882 None:intergenic 45.0%
CACCAGAGTTGTCATTGAGT+TGG - chr8_2:60242861-60242880 Msa1258940:five_prime_UTR 45.0%
CACCCCAAAGGGAGAAATAA+AGG + chr8_2:60242897-60242916 None:intergenic 45.0%
!! AGAATGGCGGGTTCTTCTCT+TGG + chr8_2:60240360-60240379 None:intergenic 50.0%
TTGTTGCACGGACATCTGAC+TGG - chr8_2:60240393-60240412 Msa1258940:three_prime_UTR 50.0%
TGTTGCACGGACATCTGACT+GGG - chr8_2:60240394-60240413 Msa1258940:three_prime_UTR 50.0%
TGGGACTGTTGAGATTGCTG+AGG - chr8_2:60240613-60240632 Msa1258940:intron 50.0%
ACTGACAGAAGTCGTGGGTT+CGG - chr8_2:60240901-60240920 Msa1258940:CDS 50.0%
!!! GTTTTGTTTCTGTTGGCGGG+TGG + chr8_2:60241292-60241311 None:intergenic 50.0%
GTTAATAAGGCCGCTCCAAG+AGG - chr8_2:60242015-60242034 Msa1258940:intron 50.0%
! CGGAATTAAAGGCACGTGGT+GGG + chr8_2:60242059-60242078 None:intergenic 50.0%
CCACCACGTGCCTTTAATTC+CGG - chr8_2:60242057-60242076 Msa1258940:CDS 50.0%
CACCACGTGCCTTTAATTCC+GGG - chr8_2:60242058-60242077 Msa1258940:CDS 50.0%
! AACCCGGAATTAAAGGCACG+TGG + chr8_2:60242063-60242082 None:intergenic 50.0%
!! TGGTAAGGTTGAGAGTGCTC+GGG - chr8_2:60242152-60242171 Msa1258940:intron 50.0%
GATGCCATTGCTGCTCTTGA+CGG - chr8_2:60242249-60242268 Msa1258940:intron 50.0%
! TACCATGCGTTGGTATGGCT+TGG - chr8_2:60242315-60242334 Msa1258940:intron 50.0%
! ACCATGCGTTGGTATGGCTT+GGG - chr8_2:60242316-60242335 Msa1258940:intron 50.0%
TGTTGCAGAGCTTGGATGGA+AGG - chr8_2:60242416-60242435 Msa1258940:CDS 50.0%
GTTGCAGAGCTTGGATGGAA+GGG - chr8_2:60242417-60242436 Msa1258940:CDS 50.0%
TGTGAAACCAGCGGCCAAAA+AGG + chr8_2:60242584-60242603 None:intergenic 50.0%
AACTGGCCAATTCCACTGCT+AGG + chr8_2:60242716-60242735 None:intergenic 50.0%
GCCCAACTCAATGACAACTC+TGG + chr8_2:60242866-60242885 None:intergenic 50.0%
GACATCTGACTGGGCTCAAC+AGG - chr8_2:60240403-60240422 Msa1258940:three_prime_UTR 55.0%
CTGGGCTCAACAGGAAGAGA+AGG - chr8_2:60240412-60240431 Msa1258940:three_prime_UTR 55.0%
CAAGCGGATGCTACATGGGT+TGG - chr8_2:60240458-60240477 Msa1258940:three_prime_UTR 55.0%
AGGGACACTGACAGAAGTCG+TGG - chr8_2:60240895-60240914 Msa1258940:CDS 55.0%
GGGACACTGACAGAAGTCGT+GGG - chr8_2:60240896-60240915 Msa1258940:CDS 55.0%
! CCGGAATTAAAGGCACGTGG+TGG + chr8_2:60242060-60242079 None:intergenic 55.0%
! ACCGGTCGATCACGTGGTTT+TGG - chr8_2:60242192-60242211 Msa1258940:intron 55.0%
GCCAAAACCACGTGATCGAC+CGG + chr8_2:60242196-60242215 None:intergenic 55.0%
CTGACCGTCAAGAGCAGCAA+TGG + chr8_2:60242256-60242275 None:intergenic 55.0%
CATTGCTGCTCTTGACGGTC+AGG - chr8_2:60242254-60242273 Msa1258940:intron 55.0%
ACCCAAGCCATACCAACGCA+TGG + chr8_2:60242320-60242339 None:intergenic 55.0%
ATGTTGCTGAGGAAAGGCCC+AGG - chr8_2:60242452-60242471 Msa1258940:CDS 55.0%
!! TGCACTCAGAAAGAGCGCCT+GGG + chr8_2:60242472-60242491 None:intergenic 55.0%
!! TTGCACTCAGAAAGAGCGCC+TGG + chr8_2:60242473-60242492 None:intergenic 55.0%
AGAGAGACCGGTCGATCACG+TGG - chr8_2:60242186-60242205 Msa1258940:intron 60.0%
! CACCTAGCCTGTTTCTCGCG+AGG - chr8_2:60242771-60242790 Msa1258940:CDS 60.0%
GACCTCGCGAGAAACAGGCT+AGG + chr8_2:60242776-60242795 None:intergenic 60.0%
CCGTGGTGCTCCTCTTGGAG+CGG + chr8_2:60242028-60242047 None:intergenic 65.0%
!! CCGCTCCAAGAGGAGCACCA+CGG - chr8_2:60242025-60242044 Msa1258940:intron 65.0%
TCAGGCCGTGGTGCTCCTCT+TGG + chr8_2:60242033-60242052 None:intergenic 65.0%
!! AAGGCACGTGGTGGGCGCTC+AGG + chr8_2:60242051-60242070 None:intergenic 70.0%
!!! CGTGGTGGGCGCTCAGGCCG+TGG + chr8_2:60242045-60242064 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 60240085 60242956 60240085 ID=Msa1258940;Name=Msa1258940
chr8_2 mRNA 60240085 60242956 60240085 ID=Msa1258940-mRNA-1;Parent=Msa1258940;Name=Msa1258940-mRNA-1;_AED=0.25;_eAED=0.25;_QI=97|1|1|1|1|1|4|470|300
chr8_2 exon 60240085 60240617 60240085 ID=Msa1258940-mRNA-1:exon:18911;Parent=Msa1258940-mRNA-1
chr8_2 exon 60240766 60241050 60240766 ID=Msa1258940-mRNA-1:exon:18910;Parent=Msa1258940-mRNA-1
chr8_2 exon 60242057 60242158 60242057 ID=Msa1258940-mRNA-1:exon:18909;Parent=Msa1258940-mRNA-1
chr8_2 exon 60242407 60242956 60242407 ID=Msa1258940-mRNA-1:exon:18908;Parent=Msa1258940-mRNA-1
chr8_2 five_prime_UTR 60242860 60242956 60242860 ID=Msa1258940-mRNA-1:five_prime_utr;Parent=Msa1258940-mRNA-1
chr8_2 CDS 60242407 60242859 60242407 ID=Msa1258940-mRNA-1:cds;Parent=Msa1258940-mRNA-1
chr8_2 CDS 60242057 60242158 60242057 ID=Msa1258940-mRNA-1:cds;Parent=Msa1258940-mRNA-1
chr8_2 CDS 60240766 60241050 60240766 ID=Msa1258940-mRNA-1:cds;Parent=Msa1258940-mRNA-1
chr8_2 CDS 60240555 60240617 60240555 ID=Msa1258940-mRNA-1:cds;Parent=Msa1258940-mRNA-1
chr8_2 three_prime_UTR 60240085 60240554 60240085 ID=Msa1258940-mRNA-1:three_prime_utr;Parent=Msa1258940-mRNA-1
Gene Sequence

>Msa1258940

ATGTCTATCACTTCCTTCAAATCTCTCACAATGGCAGAATCATGCTTACTCTCTCAACCTTCACTCTTCTACACCAAATCCAAATCCCCATTCATCTCTAATTCAGCCAAACCCTTCAAACTTCAAAACCCATCTTACAATTCTTCTAAATTTTCATCATCTGTCTCACTCGTTGCCAAGAGAAGAACCCGCCATTCTTCTTTCGTTACATTTGTTGCACGGACATCTGACTGGGCTCAACAGGAAGAGAAGGAAGATGGTGCTACATGGGAGAATCAAGCGGATGCTACATGGGTTGGTGAAACTGAAAGTAACGAGACTGAAGTTGAAGTTGCCAGTTTTGAAGAACCTTCTGAAGATTTGAAGATTTTTGTTGGGAATTTGCCTTTTGATGTTGATAGTGAGAAATTGGCTCAGCTTTTTGAGCAATCTGGGACTGTTGAGATTGCTGAGGTAATTTATAATAGGGACACTGACAGAAGTCGTGGGTTCGGATTTGTCACAATGAGTACAGCTGAAGAAGTTGAGAGAGCTGTGAACAAATTCAGTGGCTTTGAATTAGATGGAAGATTGTTGACGGTTAATAAGGCCGCTCCAAGAGGAGCACCACGGCCTGAGCGCCCACCACGTGCCTTTAATTCCGGGTTAAGAGTCTATGTTGGTAACTTGCCATGGGACGTTGACAATTCTAGCTTGGAGCAACTTTTCAGCGAACATGGTAAGGTTGAGAGTGCTCGGGTAGTCTATGACAGAGAGACCGGTCGATCACGTGGTTTTGGCTTTGTTACAATGAGCAATGAGGCTGAGATGAATGATGCCATTGCTGCTCTTGACGGTCAGAGCTTGGATGGAAGGGCAATTAGAGTGAATGTTGCTGAGGAAAGGCCCAGGCGCTCTTTCTGA
Protein sequence

>Msa1258940

MSITSFKSLTMAESCLLSQPSLFYTKSKSPFISNSAKPFKLQNPSYNSSKFSSSVSLVAKRRTRHSSFVTFVARTSDWAQQEEKEDGATWENQADATWVGETESNETEVEVASFEEPSEDLKIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTAEEVERAVNKFSGFELDGRLLTVNKAAPRGAPRPERPPRAFNSGLRVYVGNLPWDVDNSSLEQLFSEHGKVESARVVYDRETGRSRGFGFVTMSNEAEMNDAIAALDGQSLDGRAIRVNVAEERPRRSF*