AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0500510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0500510 MtrunA17_Chr3g0133941 95.413 218 7 1 1 215 1 218 4.34e-153 423
Msa0500510 MtrunA17_Chr3g0142051 37.719 114 61 3 98 210 13 117 1.12e-14 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0500510 AT1G07700.1 73.913 138 35 1 73 210 68 204 5.00e-71 215
Msa0500510 AT1G07700.4 73.913 138 35 1 73 210 68 204 5.00e-71 215
Msa0500510 AT1G07700.2 73.913 138 35 1 73 210 68 204 5.00e-71 215
Msa0500510 AT1G07700.3 73.913 138 35 1 73 210 81 217 2.05e-70 214
Msa0500510 AT5G42980.1 33.628 113 67 2 98 210 12 116 7.26e-12 60.8
Msa0500510 AT3G51030.1 36.697 109 59 3 98 205 13 112 1.70e-11 59.7

Find 62 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGGCAAAAGCGCGGTTT+TGG 0.277958 3_4:-40954698 None:intergenic
TCCTTTCTTTGTCTCTGGTT+GGG 0.298576 3_4:+40953365 None:intergenic
GCAAAATTGTGCAAGAAATC+TGG 0.329883 3_4:-40954098 Msa0500510:CDS
AACAATCCTTTCTTTGTCTC+TGG 0.330128 3_4:+40953360 None:intergenic
AATTCCCAACAAAGTGAATT+AGG 0.337981 3_4:+40953148 None:intergenic
TAGTATCCGCGAATATTAAA+AGG 0.344299 3_4:+40953083 None:intergenic
GTCAGCCTAATTCACTTTGT+TGG 0.358599 3_4:-40953153 Msa0500510:three_prime_UTR
TATGTTCGGAAAATTCATTT+TGG 0.367172 3_4:-40954628 Msa0500510:five_prime_UTR
TCAGCCTAATTCACTTTGTT+GGG 0.368019 3_4:-40953152 Msa0500510:three_prime_UTR
CTAGATAAGTCTAAAGGAAC+TGG 0.380813 3_4:-40954188 Msa0500510:CDS
TTGCGGAACGACTTAGAATC+AGG 0.406477 3_4:-40953728 Msa0500510:CDS
AATTCTCTCACACATTCAAC+AGG 0.416746 3_4:+40954239 None:intergenic
TTATGCTTTAGAAAGATAAC+AGG 0.421854 3_4:+40954062 None:intergenic
TATTGATAAGCTAAGGGATA+AGG 0.422341 3_4:+40954553 None:intergenic
CAGTGTAAAACAAGGATCAT+AGG 0.422790 3_4:+40954579 None:intergenic
TGCAGCTTCCACAAGAGGTT+CGG 0.431538 3_4:+40954141 None:intergenic
ATCCTTTCTTTGTCTCTGGT+TGG 0.431773 3_4:+40953364 None:intergenic
CTTCCATTGAATCATATGTT+CGG 0.438349 3_4:-40954642 Msa0500510:five_prime_UTR
TTTCCGAACATATGATTCAA+TGG 0.438359 3_4:+40954639 None:intergenic
AATAATTTATTGATAAGCTA+AGG 0.448915 3_4:+40954546 None:intergenic
AACTAGTGACATATCTTGTA+TGG 0.455702 3_4:+40954514 None:intergenic
GATTTCTTCCGAACCTCTTG+TGG 0.457067 3_4:-40954149 Msa0500510:CDS
AGTCATAGAAAACTATATCT+TGG 0.473717 3_4:-40954368 Msa0500510:CDS
AAGGTGAACTTAGAGCGTTC+AGG 0.476154 3_4:+40954668 None:intergenic
AAGCCTTGTTGACATTCAAC+GGG 0.478995 3_4:+40954299 None:intergenic
TCATCTTCATCATCTTCATC+AGG 0.483274 3_4:+40954275 None:intergenic
TTGAGCTAACTTCGAGCTCA+AGG 0.494823 3_4:-40953295 Msa0500510:exon
CAAGCCTTGTTGACATTCAA+CGG 0.505128 3_4:+40954298 None:intergenic
TTACAAAGATGGAAAACTGT+TGG 0.505182 3_4:-40953395 Msa0500510:CDS
AGATTAGTAGTAGATGAGTC+TGG 0.507076 3_4:-40953061 Msa0500510:three_prime_UTR
AAAATTCTAGATAAGTCTAA+AGG 0.519884 3_4:-40954194 Msa0500510:CDS
TCTAAGTCGTTCCGCAACCT+CGG 0.520659 3_4:+40953734 None:intergenic
AAGCTGCAAGTATATTGAGC+AGG 0.522236 3_4:-40954126 Msa0500510:CDS
AGTGTAAAACAAGGATCATA+GGG 0.526894 3_4:+40954580 None:intergenic
AACTGGATCTCTTGTTGTGG+TGG 0.529192 3_4:-40954171 Msa0500510:CDS
CGATGAAGAATCCGAGGTTG+CGG 0.530555 3_4:-40953745 Msa0500510:CDS
ATACTTGCAGCTTCCACAAG+AGG 0.549845 3_4:+40954136 None:intergenic
TATGATTCAATGGAAGAAGA+AGG 0.550164 3_4:+40954649 None:intergenic
ATCTAATCTGACACTTAGAA+AGG 0.556672 3_4:+40954457 None:intergenic
ATAATTTATTGATAAGCTAA+GGG 0.559409 3_4:+40954547 None:intergenic
CATAGAAAACTATATCTTGG+TGG 0.559490 3_4:-40954365 Msa0500510:CDS
ACAAAGTGAATTAGGCTGAC+AGG 0.560513 3_4:+40953156 None:intergenic
TCCCAACCAGAGACAAAGAA+AGG 0.565898 3_4:-40953366 Msa0500510:CDS
ATAGAAAACTATATCTTGGT+GGG 0.574832 3_4:-40954364 Msa0500510:CDS
TGGTACCTATTAATAAAATG+AGG 0.575324 3_4:-40954334 Msa0500510:CDS
AGCTGCAAGTATATTGAGCA+GGG 0.583838 3_4:-40954125 Msa0500510:CDS
TGAGCTAACTTCGAGCTCAA+GGG 0.585733 3_4:-40953294 Msa0500510:exon
CTTTGTTGGGAATTGTCCAG+TGG 0.589956 3_4:-40953139 Msa0500510:three_prime_UTR
CTTCAAGAGATGAGTACTTG+AGG 0.592510 3_4:+40953329 None:intergenic
AAGAGATGAGTACTTGAGGA+TGG 0.618825 3_4:+40953333 None:intergenic
TGAACTTAGAGCGTTCAGGT+TGG 0.623262 3_4:+40954672 None:intergenic
TCTTTGTAAAAGTGGAAGAG+AGG 0.632091 3_4:+40953409 None:intergenic
TGCGGAACGACTTAGAATCA+GGG 0.632999 3_4:-40953727 Msa0500510:intron
CTAACTTCGAGCTCAAGGGA+TGG 0.651893 3_4:-40953290 Msa0500510:exon
AGGAACTGGATCTCTTGTTG+TGG 0.658617 3_4:-40954174 Msa0500510:CDS
TATCCCGTTGAATGTCAACA+AGG 0.662409 3_4:-40954302 Msa0500510:CDS
TGAATACGATGAAGAATCCG+AGG 0.668246 3_4:-40953751 Msa0500510:CDS
AGATTGGAAATTCTAGACTG+AGG 0.672668 3_4:+40954416 None:intergenic
TAAGGTGTCAGTGTAAAACA+AGG 0.672939 3_4:+40954571 None:intergenic
ATACGTACAACAGTCACTGA+GGG 0.683023 3_4:+40953257 None:intergenic
TATACGTACAACAGTCACTG+AGG 0.696844 3_4:+40953256 None:intergenic
ATATCACAAAGGCAAAAGCG+CGG 0.738438 3_4:-40954704 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTTATTGATAAGCTAA+GGG + chr3_4:40953095-40953114 None:intergenic 15.0%
!! AATAATTTATTGATAAGCTA+AGG + chr3_4:40953096-40953115 None:intergenic 15.0%
!!! TTTTTTTTCTTCTTTTTTTG+AGG - chr3_4:40954675-40954694 Msa0500510:five_prime_UTR 15.0%
!!! TTTTTTTCTTCTTTTTTTGA+GGG - chr3_4:40954676-40954695 Msa0500510:five_prime_UTR 15.0%
!! ATAATTTATTGATAAGCTAA+GGG + chr3_4:40953095-40953114 None:intergenic 15.0%
!! AATAATTTATTGATAAGCTA+AGG + chr3_4:40953096-40953115 None:intergenic 15.0%
!!! TTTTTTTTCTTCTTTTTTTG+AGG - chr3_4:40954675-40954694 Msa0500510:five_prime_UTR 15.0%
!!! TTTTTTTCTTCTTTTTTTGA+GGG - chr3_4:40954676-40954695 Msa0500510:five_prime_UTR 15.0%
!!! TTGTACCTCATTTTATTAAT+AGG + chr3_4:40953313-40953332 None:intergenic 20.0%
!! AAAATTCTAGATAAGTCTAA+AGG - chr3_4:40953445-40953464 Msa0500510:intron 20.0%
!!! TTAACTATTTAGTTTGTCTA+TGG - chr3_4:40953619-40953638 Msa0500510:intron 20.0%
!!! AATTGTCTTTAAAAGTTTGA+TGG - chr3_4:40953994-40954013 Msa0500510:intron 20.0%
!! CTAGATATTTATATCATGTA+GGG + chr3_4:40954168-40954187 None:intergenic 20.0%
!! TAAAAACAGAAAAAGAGTAA+TGG - chr3_4:40954531-40954550 Msa0500510:five_prime_UTR 20.0%
!!! TTGTACCTCATTTTATTAAT+AGG + chr3_4:40953313-40953332 None:intergenic 20.0%
!! AAAATTCTAGATAAGTCTAA+AGG - chr3_4:40953445-40953464 Msa0500510:intron 20.0%
!!! TTAACTATTTAGTTTGTCTA+TGG - chr3_4:40953619-40953638 Msa0500510:intron 20.0%
!!! AATTGTCTTTAAAAGTTTGA+TGG - chr3_4:40953994-40954013 Msa0500510:intron 20.0%
!! CTAGATATTTATATCATGTA+GGG + chr3_4:40954168-40954187 None:intergenic 20.0%
!! TAAAAACAGAAAAAGAGTAA+TGG - chr3_4:40954531-40954550 Msa0500510:five_prime_UTR 20.0%
!! TATGTTCGGAAAATTCATTT+TGG - chr3_4:40953011-40953030 Msa0500510:three_prime_UTR 25.0%
! AGTCATAGAAAACTATATCT+TGG - chr3_4:40953271-40953290 Msa0500510:three_prime_UTR 25.0%
! ATAGAAAACTATATCTTGGT+GGG - chr3_4:40953275-40953294 Msa0500510:three_prime_UTR 25.0%
! TGGTACCTATTAATAAAATG+AGG - chr3_4:40953305-40953324 Msa0500510:exon 25.0%
!!! TAGACTTATCTAGAATTTTG+AGG + chr3_4:40953444-40953463 None:intergenic 25.0%
!!! TTATGCTTTAGAAAGATAAC+AGG + chr3_4:40953580-40953599 None:intergenic 25.0%
! ACAAATTAGTTAGTGACTTA+TGG - chr3_4:40953654-40953673 Msa0500510:intron 25.0%
!! ATTTGCATGATTACTCTTTT+TGG - chr3_4:40954029-40954048 Msa0500510:intron 25.0%
! GCTAGATATTTATATCATGT+AGG + chr3_4:40954169-40954188 None:intergenic 25.0%
! AAAAAAAAAATCATGACAGC+TGG + chr3_4:40954663-40954682 None:intergenic 25.0%
!! TATGTTCGGAAAATTCATTT+TGG - chr3_4:40953011-40953030 Msa0500510:three_prime_UTR 25.0%
! AGTCATAGAAAACTATATCT+TGG - chr3_4:40953271-40953290 Msa0500510:three_prime_UTR 25.0%
! ATAGAAAACTATATCTTGGT+GGG - chr3_4:40953275-40953294 Msa0500510:three_prime_UTR 25.0%
! TGGTACCTATTAATAAAATG+AGG - chr3_4:40953305-40953324 Msa0500510:exon 25.0%
!!! TAGACTTATCTAGAATTTTG+AGG + chr3_4:40953444-40953463 None:intergenic 25.0%
!!! TTATGCTTTAGAAAGATAAC+AGG + chr3_4:40953580-40953599 None:intergenic 25.0%
! ACAAATTAGTTAGTGACTTA+TGG - chr3_4:40953654-40953673 Msa0500510:intron 25.0%
!! ATTTGCATGATTACTCTTTT+TGG - chr3_4:40954029-40954048 Msa0500510:intron 25.0%
! GCTAGATATTTATATCATGT+AGG + chr3_4:40954169-40954188 None:intergenic 25.0%
! AAAAAAAAAATCATGACAGC+TGG + chr3_4:40954663-40954682 None:intergenic 25.0%
TATGATTCAATGGAAGAAGA+AGG + chr3_4:40952993-40953012 None:intergenic 30.0%
CTTCCATTGAATCATATGTT+CGG - chr3_4:40952997-40953016 Msa0500510:three_prime_UTR 30.0%
TTTCCGAACATATGATTCAA+TGG + chr3_4:40953003-40953022 None:intergenic 30.0%
AGTGTAAAACAAGGATCATA+GGG + chr3_4:40953062-40953081 None:intergenic 30.0%
TATTGATAAGCTAAGGGATA+AGG + chr3_4:40953089-40953108 None:intergenic 30.0%
AACTAGTGACATATCTTGTA+TGG + chr3_4:40953128-40953147 None:intergenic 30.0%
ATCTAATCTGACACTTAGAA+AGG + chr3_4:40953185-40953204 None:intergenic 30.0%
!!! TTCCAATCTAGTTTTTAGCT+TGG - chr3_4:40953237-40953256 Msa0500510:three_prime_UTR 30.0%
AACCAAGCTAAAAACTAGAT+TGG + chr3_4:40953242-40953261 None:intergenic 30.0%
! GATATAGTTTTCTATGACTG+TGG + chr3_4:40953270-40953289 None:intergenic 30.0%
CATAGAAAACTATATCTTGG+TGG - chr3_4:40953274-40953293 Msa0500510:three_prime_UTR 30.0%
TAGTTTGAGAGACAATGATA+AGG + chr3_4:40953778-40953797 None:intergenic 30.0%
ACATGTATAGATGATACTGA+TGG + chr3_4:40953961-40953980 None:intergenic 30.0%
AGAGTAATCATGCAAATGAA+GGG + chr3_4:40954026-40954045 None:intergenic 30.0%
AAGAGTAATCATGCAAATGA+AGG + chr3_4:40954027-40954046 None:intergenic 30.0%
TACCAAAATCAACTTATTGC+AGG - chr3_4:40954202-40954221 Msa0500510:CDS 30.0%
! GTTTTCCATCTTTGTAAAAG+TGG + chr3_4:40954241-40954260 None:intergenic 30.0%
TTACAAAGATGGAAAACTGT+TGG - chr3_4:40954244-40954263 Msa0500510:CDS 30.0%
AATTCCCAACAAAGTGAATT+AGG + chr3_4:40954494-40954513 None:intergenic 30.0%
!! TGTTTTTACAAATTCTCCAC+TGG + chr3_4:40954519-40954538 None:intergenic 30.0%
! ATGGTACCTTTTAATATTCG+CGG - chr3_4:40954550-40954569 Msa0500510:five_prime_UTR 30.0%
TAGTATCCGCGAATATTAAA+AGG + chr3_4:40954559-40954578 None:intergenic 30.0%
TATGATTCAATGGAAGAAGA+AGG + chr3_4:40952993-40953012 None:intergenic 30.0%
CTTCCATTGAATCATATGTT+CGG - chr3_4:40952997-40953016 Msa0500510:three_prime_UTR 30.0%
TTTCCGAACATATGATTCAA+TGG + chr3_4:40953003-40953022 None:intergenic 30.0%
AGTGTAAAACAAGGATCATA+GGG + chr3_4:40953062-40953081 None:intergenic 30.0%
TATTGATAAGCTAAGGGATA+AGG + chr3_4:40953089-40953108 None:intergenic 30.0%
AACTAGTGACATATCTTGTA+TGG + chr3_4:40953128-40953147 None:intergenic 30.0%
ATCTAATCTGACACTTAGAA+AGG + chr3_4:40953185-40953204 None:intergenic 30.0%
!!! TTCCAATCTAGTTTTTAGCT+TGG - chr3_4:40953237-40953256 Msa0500510:three_prime_UTR 30.0%
AACCAAGCTAAAAACTAGAT+TGG + chr3_4:40953242-40953261 None:intergenic 30.0%
! GATATAGTTTTCTATGACTG+TGG + chr3_4:40953270-40953289 None:intergenic 30.0%
CATAGAAAACTATATCTTGG+TGG - chr3_4:40953274-40953293 Msa0500510:three_prime_UTR 30.0%
TAGTTTGAGAGACAATGATA+AGG + chr3_4:40953778-40953797 None:intergenic 30.0%
ACATGTATAGATGATACTGA+TGG + chr3_4:40953961-40953980 None:intergenic 30.0%
AGAGTAATCATGCAAATGAA+GGG + chr3_4:40954026-40954045 None:intergenic 30.0%
AAGAGTAATCATGCAAATGA+AGG + chr3_4:40954027-40954046 None:intergenic 30.0%
TACCAAAATCAACTTATTGC+AGG - chr3_4:40954202-40954221 Msa0500510:CDS 30.0%
! GTTTTCCATCTTTGTAAAAG+TGG + chr3_4:40954241-40954260 None:intergenic 30.0%
TTACAAAGATGGAAAACTGT+TGG - chr3_4:40954244-40954263 Msa0500510:CDS 30.0%
AATTCCCAACAAAGTGAATT+AGG + chr3_4:40954494-40954513 None:intergenic 30.0%
!! TGTTTTTACAAATTCTCCAC+TGG + chr3_4:40954519-40954538 None:intergenic 30.0%
! ATGGTACCTTTTAATATTCG+CGG - chr3_4:40954550-40954569 Msa0500510:five_prime_UTR 30.0%
TAGTATCCGCGAATATTAAA+AGG + chr3_4:40954559-40954578 None:intergenic 30.0%
CAGTGTAAAACAAGGATCAT+AGG + chr3_4:40953063-40953082 None:intergenic 35.0%
! TAAGGTGTCAGTGTAAAACA+AGG + chr3_4:40953071-40953090 None:intergenic 35.0%
AGATTGGAAATTCTAGACTG+AGG + chr3_4:40953226-40953245 None:intergenic 35.0%
ATATCTTGGTGGGACAAAAA+TGG - chr3_4:40953285-40953304 Msa0500510:three_prime_UTR 35.0%
TCATCTTCATCATCTTCATC+AGG + chr3_4:40953367-40953386 None:intergenic 35.0%
AATTCTCTCACACATTCAAC+AGG + chr3_4:40953403-40953422 None:intergenic 35.0%
CTAGATAAGTCTAAAGGAAC+TGG - chr3_4:40953451-40953470 Msa0500510:intron 35.0%
GCAAAATTGTGCAAGAAATC+TGG - chr3_4:40953541-40953560 Msa0500510:intron 35.0%
TCAATCACCTGCAATAAGAA+GGG + chr3_4:40953868-40953887 None:intergenic 35.0%
ATCAATCACCTGCAATAAGA+AGG + chr3_4:40953869-40953888 None:intergenic 35.0%
!!! TGCCTGCAATAAGTTGATTT+TGG + chr3_4:40954207-40954226 None:intergenic 35.0%
TCTTTGTAAAAGTGGAAGAG+AGG + chr3_4:40954233-40954252 None:intergenic 35.0%
!! CTCTTCCACTTTTACAAAGA+TGG - chr3_4:40954233-40954252 Msa0500510:CDS 35.0%
AACAATCCTTTCTTTGTCTC+TGG + chr3_4:40954282-40954301 None:intergenic 35.0%
TCAGCCTAATTCACTTTGTT+GGG - chr3_4:40954487-40954506 Msa0500510:CDS 35.0%
AGATTAGTAGTAGATGAGTC+TGG - chr3_4:40954578-40954597 Msa0500510:five_prime_UTR 35.0%
CAGTGTAAAACAAGGATCAT+AGG + chr3_4:40953063-40953082 None:intergenic 35.0%
! TAAGGTGTCAGTGTAAAACA+AGG + chr3_4:40953071-40953090 None:intergenic 35.0%
AGATTGGAAATTCTAGACTG+AGG + chr3_4:40953226-40953245 None:intergenic 35.0%
ATATCTTGGTGGGACAAAAA+TGG - chr3_4:40953285-40953304 Msa0500510:three_prime_UTR 35.0%
TCATCTTCATCATCTTCATC+AGG + chr3_4:40953367-40953386 None:intergenic 35.0%
AATTCTCTCACACATTCAAC+AGG + chr3_4:40953403-40953422 None:intergenic 35.0%
CTAGATAAGTCTAAAGGAAC+TGG - chr3_4:40953451-40953470 Msa0500510:intron 35.0%
GCAAAATTGTGCAAGAAATC+TGG - chr3_4:40953541-40953560 Msa0500510:intron 35.0%
TCAATCACCTGCAATAAGAA+GGG + chr3_4:40953868-40953887 None:intergenic 35.0%
ATCAATCACCTGCAATAAGA+AGG + chr3_4:40953869-40953888 None:intergenic 35.0%
!!! TGCCTGCAATAAGTTGATTT+TGG + chr3_4:40954207-40954226 None:intergenic 35.0%
TCTTTGTAAAAGTGGAAGAG+AGG + chr3_4:40954233-40954252 None:intergenic 35.0%
!! CTCTTCCACTTTTACAAAGA+TGG - chr3_4:40954233-40954252 Msa0500510:CDS 35.0%
AACAATCCTTTCTTTGTCTC+TGG + chr3_4:40954282-40954301 None:intergenic 35.0%
TCAGCCTAATTCACTTTGTT+GGG - chr3_4:40954487-40954506 Msa0500510:CDS 35.0%
AGATTAGTAGTAGATGAGTC+TGG - chr3_4:40954578-40954597 Msa0500510:five_prime_UTR 35.0%
TATCCCGTTGAATGTCAACA+AGG - chr3_4:40953337-40953356 Msa0500510:CDS 40.0%
!! AAGCCTTGTTGACATTCAAC+GGG + chr3_4:40953343-40953362 None:intergenic 40.0%
!! CAAGCCTTGTTGACATTCAA+CGG + chr3_4:40953344-40953363 None:intergenic 40.0%
AAGCTGCAAGTATATTGAGC+AGG - chr3_4:40953513-40953532 Msa0500510:intron 40.0%
AGCTGCAAGTATATTGAGCA+GGG - chr3_4:40953514-40953533 Msa0500510:intron 40.0%
CAATCACCTGCAATAAGAAG+GGG + chr3_4:40953867-40953886 None:intergenic 40.0%
TGAATACGATGAAGAATCCG+AGG - chr3_4:40953888-40953907 Msa0500510:intron 40.0%
TCCTTTCTTTGTCTCTGGTT+GGG + chr3_4:40954277-40954296 None:intergenic 40.0%
ATCCTTTCTTTGTCTCTGGT+TGG + chr3_4:40954278-40954297 None:intergenic 40.0%
AAGAGATGAGTACTTGAGGA+TGG + chr3_4:40954309-40954328 None:intergenic 40.0%
CTTCAAGAGATGAGTACTTG+AGG + chr3_4:40954313-40954332 None:intergenic 40.0%
ATACGTACAACAGTCACTGA+GGG + chr3_4:40954385-40954404 None:intergenic 40.0%
TATACGTACAACAGTCACTG+AGG + chr3_4:40954386-40954405 None:intergenic 40.0%
ACAAAGTGAATTAGGCTGAC+AGG + chr3_4:40954486-40954505 None:intergenic 40.0%
GTCAGCCTAATTCACTTTGT+TGG - chr3_4:40954486-40954505 Msa0500510:CDS 40.0%
TATCCCGTTGAATGTCAACA+AGG - chr3_4:40953337-40953356 Msa0500510:CDS 40.0%
!! AAGCCTTGTTGACATTCAAC+GGG + chr3_4:40953343-40953362 None:intergenic 40.0%
!! CAAGCCTTGTTGACATTCAA+CGG + chr3_4:40953344-40953363 None:intergenic 40.0%
AAGCTGCAAGTATATTGAGC+AGG - chr3_4:40953513-40953532 Msa0500510:intron 40.0%
AGCTGCAAGTATATTGAGCA+GGG - chr3_4:40953514-40953533 Msa0500510:intron 40.0%
CAATCACCTGCAATAAGAAG+GGG + chr3_4:40953867-40953886 None:intergenic 40.0%
TGAATACGATGAAGAATCCG+AGG - chr3_4:40953888-40953907 Msa0500510:intron 40.0%
TCCTTTCTTTGTCTCTGGTT+GGG + chr3_4:40954277-40954296 None:intergenic 40.0%
ATCCTTTCTTTGTCTCTGGT+TGG + chr3_4:40954278-40954297 None:intergenic 40.0%
AAGAGATGAGTACTTGAGGA+TGG + chr3_4:40954309-40954328 None:intergenic 40.0%
CTTCAAGAGATGAGTACTTG+AGG + chr3_4:40954313-40954332 None:intergenic 40.0%
ATACGTACAACAGTCACTGA+GGG + chr3_4:40954385-40954404 None:intergenic 40.0%
TATACGTACAACAGTCACTG+AGG + chr3_4:40954386-40954405 None:intergenic 40.0%
ACAAAGTGAATTAGGCTGAC+AGG + chr3_4:40954486-40954505 None:intergenic 40.0%
GTCAGCCTAATTCACTTTGT+TGG - chr3_4:40954486-40954505 Msa0500510:CDS 40.0%
! TGAACTTAGAGCGTTCAGGT+TGG + chr3_4:40952970-40952989 None:intergenic 45.0%
! AAGGTGAACTTAGAGCGTTC+AGG + chr3_4:40952974-40952993 None:intergenic 45.0%
AGGAACTGGATCTCTTGTTG+TGG - chr3_4:40953465-40953484 Msa0500510:intron 45.0%
! AACTGGATCTCTTGTTGTGG+TGG - chr3_4:40953468-40953487 Msa0500510:intron 45.0%
GATTTCTTCCGAACCTCTTG+TGG - chr3_4:40953490-40953509 Msa0500510:intron 45.0%
ATACTTGCAGCTTCCACAAG+AGG + chr3_4:40953506-40953525 None:intergenic 45.0%
ATCACTCCCCTTCTTATTGC+AGG - chr3_4:40953858-40953877 Msa0500510:intron 45.0%
TTGCGGAACGACTTAGAATC+AGG - chr3_4:40953911-40953930 Msa0500510:intron 45.0%
TGCGGAACGACTTAGAATCA+GGG - chr3_4:40953912-40953931 Msa0500510:intron 45.0%
TCCCAACCAGAGACAAAGAA+AGG - chr3_4:40954273-40954292 Msa0500510:CDS 45.0%
TTGAGCTAACTTCGAGCTCA+AGG - chr3_4:40954344-40954363 Msa0500510:CDS 45.0%
TGAGCTAACTTCGAGCTCAA+GGG - chr3_4:40954345-40954364 Msa0500510:CDS 45.0%
CTTTGTTGGGAATTGTCCAG+TGG - chr3_4:40954500-40954519 Msa0500510:CDS 45.0%
! TGAACTTAGAGCGTTCAGGT+TGG + chr3_4:40952970-40952989 None:intergenic 45.0%
! AAGGTGAACTTAGAGCGTTC+AGG + chr3_4:40952974-40952993 None:intergenic 45.0%
AGGAACTGGATCTCTTGTTG+TGG - chr3_4:40953465-40953484 Msa0500510:intron 45.0%
! AACTGGATCTCTTGTTGTGG+TGG - chr3_4:40953468-40953487 Msa0500510:intron 45.0%
GATTTCTTCCGAACCTCTTG+TGG - chr3_4:40953490-40953509 Msa0500510:intron 45.0%
ATACTTGCAGCTTCCACAAG+AGG + chr3_4:40953506-40953525 None:intergenic 45.0%
ATCACTCCCCTTCTTATTGC+AGG - chr3_4:40953858-40953877 Msa0500510:intron 45.0%
TTGCGGAACGACTTAGAATC+AGG - chr3_4:40953911-40953930 Msa0500510:intron 45.0%
TGCGGAACGACTTAGAATCA+GGG - chr3_4:40953912-40953931 Msa0500510:intron 45.0%
TCCCAACCAGAGACAAAGAA+AGG - chr3_4:40954273-40954292 Msa0500510:CDS 45.0%
TTGAGCTAACTTCGAGCTCA+AGG - chr3_4:40954344-40954363 Msa0500510:CDS 45.0%
TGAGCTAACTTCGAGCTCAA+GGG - chr3_4:40954345-40954364 Msa0500510:CDS 45.0%
CTTTGTTGGGAATTGTCCAG+TGG - chr3_4:40954500-40954519 Msa0500510:CDS 45.0%
TGCAGCTTCCACAAGAGGTT+CGG + chr3_4:40953501-40953520 None:intergenic 50.0%
CGATGAAGAATCCGAGGTTG+CGG - chr3_4:40953894-40953913 Msa0500510:intron 50.0%
TCTAAGTCGTTCCGCAACCT+CGG + chr3_4:40953908-40953927 None:intergenic 50.0%
CTAACTTCGAGCTCAAGGGA+TGG - chr3_4:40954349-40954368 Msa0500510:CDS 50.0%
TGCAGCTTCCACAAGAGGTT+CGG + chr3_4:40953501-40953520 None:intergenic 50.0%
CGATGAAGAATCCGAGGTTG+CGG - chr3_4:40953894-40953913 Msa0500510:intron 50.0%
TCTAAGTCGTTCCGCAACCT+CGG + chr3_4:40953908-40953927 None:intergenic 50.0%
CTAACTTCGAGCTCAAGGGA+TGG - chr3_4:40954349-40954368 Msa0500510:CDS 50.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 40952948 40954713 40952948 ID=Msa0500510;Name=Msa0500510
chr3_4 mRNA 40952948 40954713 40952948 ID=Msa0500510-mRNA-1;Parent=Msa0500510;Name=Msa0500510-mRNA-1;_AED=0.00;_eAED=0.00;_QI=188|1|1|1|1|1|3|361|215
chr3_4 exon 40952948 40953437 40952948 ID=Msa0500510-mRNA-1:exon:8398;Parent=Msa0500510-mRNA-1
chr3_4 exon 40953728 40953781 40953728 ID=Msa0500510-mRNA-1:exon:8397;Parent=Msa0500510-mRNA-1
chr3_4 exon 40954061 40954713 40954061 ID=Msa0500510-mRNA-1:exon:8396;Parent=Msa0500510-mRNA-1
chr3_4 five_prime_UTR 40954526 40954713 40954526 ID=Msa0500510-mRNA-1:five_prime_utr;Parent=Msa0500510-mRNA-1
chr3_4 CDS 40954061 40954525 40954061 ID=Msa0500510-mRNA-1:cds;Parent=Msa0500510-mRNA-1
chr3_4 CDS 40953728 40953781 40953728 ID=Msa0500510-mRNA-1:cds;Parent=Msa0500510-mRNA-1
chr3_4 CDS 40953309 40953437 40953309 ID=Msa0500510-mRNA-1:cds;Parent=Msa0500510-mRNA-1
chr3_4 three_prime_UTR 40952948 40953308 40952948 ID=Msa0500510-mRNA-1:three_prime_utr;Parent=Msa0500510-mRNA-1
Gene Sequence

>Msa0500510

ATGTCACTAGTTGTCATTCAGCAGCAGAATATTCTGCATACAAAGTCCTTTCTAAGTGTCAGATTAGATCTGTACTTAAACAAACAACCTCAGTCTAGAATTTCCAATCTAGTTTTTAGCTTGGTTTCTAACCACAGTCATAGAAAACTATATCTTGGTGGGACAAAAATGGTACCTATTAATAAAATGAGGTACAATTTCTATCCCGTTGAATGTCAACAAGGCTTGCCTGATGAAGATGATGAAGATGATGATGATGTCTGTCCTGTTGAATGTGTGAGAGAATTCAAGACTGATGAAGAGTTCCTCAAAATTCTAGATAAGTCTAAAGGAACTGGATCTCTTGTTGTGGTGGATTTCTTCCGAACCTCTTGTGGAAGCTGCAAGTATATTGAGCAGGGTTTTGCAAAATTGTGCAAGAAATCTGGTAGCAATGATGTTCCTGTTATCTTTCTAAAGCATAATGTGATTGATGAATACGATGAAGAATCCGAGGTTGCGGAACGACTTAGAATCAGGGCAGTGCCTCTCTTCCACTTTTACAAAGATGGAAAACTGTTGGAAGCATTCCCAACCAGAGACAAAGAAAGGATTGTTGCTGCCATCCTCAAGTACTCATCTCTTGAAGCAGAAGATATTTTGAGCTAA

Protein sequence

>Msa0500510

MSLVVIQQQNILHTKSFLSVRLDLYLNKQPQSRISNLVFSLVSNHSHRKLYLGGTKMVPINKMRYNFYPVECQQGLPDEDDEDDDDVCPVECVREFKTDEEFLKILDKSKGTGSLVVVDFFRTSCGSCKYIEQGFAKLCKKSGSNDVPVIFLKHNVIDEYDEESEVAERLRIRAVPLFHFYKDGKLLEAFPTRDKERIVAAILKYSSLEAEDILS*