Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0667660 | XP_003604651.1 | 79.350 | 523 | 72 | 6 | 1 | 491 | 1 | 519 | 0.0 | 787 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0667660 | G7JN22 | 79.350 | 523 | 72 | 6 | 1 | 491 | 1 | 519 | 0.0 | 787 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0663240 | Msa0667660 | 0.824458 | 7.983905e-54 | -8.615850e-47 |
| Msa0667660 | Msa0688480 | 0.800372 | 1.486307e-48 | -8.615850e-47 |
| Msa0667660 | Msa1403480 | 0.807299 | 5.408703e-50 | -8.615850e-47 |
| Msa0667660 | Msa1420290 | 0.807934 | 3.965612e-50 | -8.615850e-47 |
| Msa0667660 | Msa1420580 | 0.808406 | 3.145566e-50 | -8.615850e-47 |
| Msa0220580 | Msa0667660 | 0.806489 | 8.022740e-50 | -8.615850e-47 |
| Msa0490870 | Msa0667660 | 0.810631 | 1.047365e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0667660 | MtrunA17_Chr4g0006171 | 79.350 | 523 | 72 | 6 | 1 | 491 | 1 | 519 | 0.0 | 787 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0667660 | AT5G01260.1 | 36.071 | 280 | 132 | 6 | 68 | 345 | 70 | 304 | 1.18e-44 | 159 |
| Msa0667660 | AT5G01260.2 | 33.618 | 351 | 176 | 10 | 2 | 346 | 6 | 305 | 2.33e-44 | 160 |
| Msa0667660 | AT5G01260.3 | 35.897 | 273 | 128 | 6 | 68 | 338 | 70 | 297 | 4.85e-44 | 157 |
Find 105 sgRNAs with CRISPR-Local
Find 280 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAAGAAGGTGATATTATT+TGG | 0.215755 | 4_4:+8245779 | Msa0667660:CDS |
| ATGATCCTAAGCTTGGTTTA+TGG | 0.253382 | 4_4:+8245271 | Msa0667660:CDS |
| TTGTATTATTCTTTCAGTTT+TGG | 0.258568 | 4_4:+8248577 | Msa0667660:three_prime_UTR |
| TGTTCATAGTTTCCCATGTT+TGG | 0.263305 | 4_4:-8245825 | None:intergenic |
| TACTAAAAGATTGCGACTTT+GGG | 0.274106 | 4_4:+8245226 | Msa0667660:CDS |
| CTATACAAGTTTATACTAAA+AGG | 0.304970 | 4_4:+8245757 | Msa0667660:CDS |
| TTAGATTCTTCTTCCATTGT+TGG | 0.308755 | 4_4:-8248239 | None:intergenic |
| CGCAAGGCATTACCATGAAT+TGG | 0.309591 | 4_4:-8247595 | None:intergenic |
| CGCAAGGCATTACCATGAAT+TGG | 0.309591 | 4_4:-8248269 | None:intergenic |
| CAACACAACACAATGATGTT+TGG | 0.319523 | 4_4:-8244021 | None:intergenic |
| TAGGGCTTCACCAGCTTTGT+AGG | 0.320513 | 4_4:+8247961 | Msa0667660:intron |
| CAGCTTTGTAGGGTTGAGTT+AGG | 0.334637 | 4_4:+8247972 | Msa0667660:CDS |
| CTACTAAAAGATTGCGACTT+TGG | 0.334838 | 4_4:+8245225 | Msa0667660:CDS |
| AGAAACACAAATTGATGCTT+TGG | 0.335545 | 4_4:+8245984 | Msa0667660:CDS |
| TCCAGGACTGGTTCATCAAT+TGG | 0.340516 | 4_4:-8246012 | None:intergenic |
| CCAGCTCAACAGTCCATATA+TGG | 0.352452 | 4_4:-8245332 | None:intergenic |
| CAACACAATGATGTTTGGTT+TGG | 0.352722 | 4_4:-8244016 | None:intergenic |
| TCAGTAGAAGTTGACACTTC+TGG | 0.353853 | 4_4:-8245943 | None:intergenic |
| CATGGTCTGATGGCCATATA+TGG | 0.354858 | 4_4:+8245319 | Msa0667660:CDS |
| AATAATTGTTCTTGAGGATT+GGG | 0.356549 | 4_4:+8245849 | Msa0667660:CDS |
| GATCATCAGTGGTTTGTTCC+AGG | 0.367487 | 4_4:-8246029 | None:intergenic |
| GCTATGTTTGCCGAAAATAT+AGG | 0.378453 | 4_4:+8246087 | Msa0667660:CDS |
| AGAACCGGAGGTTCTTCATT+TGG | 0.386077 | 4_4:-8245919 | None:intergenic |
| GATCCTAGCTTATGAACTAT+AGG | 0.387560 | 4_4:-8244098 | None:intergenic |
| GCATGAAGAACAGTTTCATT+TGG | 0.387821 | 4_4:+8247540 | Msa0667660:CDS |
| TAAATTACATAGATTGTGTA+TGG | 0.388589 | 4_4:+8248620 | Msa0667660:three_prime_UTR |
| AGGTGATATTATTTGGCAAC+CGG | 0.392152 | 4_4:+8245786 | Msa0667660:CDS |
| ACATGAAGAGCAGTTTCATT+TGG | 0.393105 | 4_4:+8248214 | Msa0667660:CDS |
| GGAAAGAGTGAAACAAGAAA+AGG | 0.394035 | 4_4:-8244159 | None:intergenic |
| GAATAATTGTTCTTGAGGAT+TGG | 0.398780 | 4_4:+8245848 | Msa0667660:CDS |
| CTTTGGGGAACAGTTTCTAA+TGG | 0.404905 | 4_4:+8245242 | Msa0667660:CDS |
| GTCAATGGTAATGCATCTAA+AGG | 0.413839 | 4_4:-8245297 | None:intergenic |
| AATTTGTGTTTCTTCAATGC+TGG | 0.414945 | 4_4:-8245974 | None:intergenic |
| TATTATGCTGTCTTGTTACA+TGG | 0.423619 | 4_4:+8248553 | Msa0667660:three_prime_UTR |
| TCTAACTCAGAGCCAATTCA+TGG | 0.434464 | 4_4:+8248257 | Msa0667660:CDS |
| GGAGGTCCTGTTCTTGTACC+TGG | 0.437575 | 4_4:+8246267 | Msa0667660:CDS |
| GAAAGAGTGAAACAAGAAAA+GGG | 0.442955 | 4_4:-8244158 | None:intergenic |
| GGGGAACAGTTTCTAATGGT+TGG | 0.456220 | 4_4:+8245246 | Msa0667660:CDS |
| TGCTGTGCCATCTGAACATC+AGG | 0.457559 | 4_4:+8244256 | Msa0667660:CDS |
| AGCTCTTATCCATCTTTCCC+AGG | 0.460639 | 4_4:-8248453 | None:intergenic |
| TCAGTGGTTTGTTCCAGGAC+TGG | 0.464473 | 4_4:-8246024 | None:intergenic |
| GCCAATTGATGAACCAGTCC+TGG | 0.468202 | 4_4:+8246011 | Msa0667660:CDS |
| GTTGACACTTCTGGTAGAAC+CGG | 0.468943 | 4_4:-8245934 | None:intergenic |
| TTCTGATCCTGAGTTTCAAA+AGG | 0.469360 | 4_4:-8246372 | None:intergenic |
| ATTAAGCCAGGTACAAGAAC+AGG | 0.470486 | 4_4:-8246273 | None:intergenic |
| TCTTCTTCAACAACTTCACT+TGG | 0.473052 | 4_4:-8246321 | None:intergenic |
| CTTAGAACTAAAACTTGTGA+AGG | 0.476857 | 4_4:-8244075 | None:intergenic |
| GAACAGAATAATTGTTCTTG+AGG | 0.486338 | 4_4:+8245843 | Msa0667660:CDS |
| GTTGGAGATGATCCTAAGCT+TGG | 0.486433 | 4_4:+8245264 | Msa0667660:CDS |
| TCAAACTCAGAGCCAATTCA+TGG | 0.486763 | 4_4:+8247583 | Msa0667660:CDS |
| CTTGAAGCTTGTACAAAACA+AGG | 0.495159 | 4_4:+8244217 | Msa0667660:CDS |
| TTTATACTAAAAGGAAAAGA+AGG | 0.503898 | 4_4:+8245766 | Msa0667660:CDS |
| GTACTTGTACTTATCTCTTG+TGG | 0.509169 | 4_4:-8248167 | None:intergenic |
| TCAATGGTAATGCATCTAAA+GGG | 0.510357 | 4_4:-8245296 | None:intergenic |
| GGGTTCCATAAACCAAGCTT+AGG | 0.510510 | 4_4:-8245276 | None:intergenic |
| TGCCGAAAATATAGGTTCCT+CGG | 0.514374 | 4_4:+8246095 | Msa0667660:CDS |
| AGGGCTTCACCAGCTTTGTA+GGG | 0.518853 | 4_4:+8247962 | Msa0667660:intron |
| ACTTTATACTAAAAGATAAG+TGG | 0.522726 | 4_4:-8248645 | None:intergenic |
| GTCATGTGTTCAGGATATGC+CGG | 0.525962 | 4_4:+8245720 | Msa0667660:intron |
| TTGGCATCAACAATGGAAGA+AGG | 0.534614 | 4_4:+8247559 | Msa0667660:CDS |
| TAAGAGCTCAAAGTGTTTGA+TGG | 0.536787 | 4_4:+8248468 | Msa0667660:CDS |
| TCAACCAAATGAAGAACCTC+CGG | 0.536881 | 4_4:+8245915 | Msa0667660:CDS |
| CCATATATGGACTGTTGAGC+TGG | 0.538736 | 4_4:+8245332 | Msa0667660:CDS |
| TATTATTTGGCAACCGGGGT+CGG | 0.540226 | 4_4:+8245792 | Msa0667660:CDS |
| TCAGTCAACGGTATTAAGCC+AGG | 0.540479 | 4_4:-8246285 | None:intergenic |
| TGTTCGCTTTGTTGAACTTG+AGG | 0.544102 | 4_4:-8245073 | None:intergenic |
| CGGATCGAGTAATCCAAACA+TGG | 0.544820 | 4_4:+8245812 | Msa0667660:CDS |
| CAGATGGCACAGCATGCAAA+GGG | 0.546614 | 4_4:-8244247 | None:intergenic |
| AGAACTTCAGAAAATAATAG+AGG | 0.549395 | 4_4:+8245879 | Msa0667660:CDS |
| AAGCCTATAGTTCATAAGCT+AGG | 0.553146 | 4_4:+8244095 | Msa0667660:CDS |
| CAACAAAATCTAATCGTACA+AGG | 0.553450 | 4_4:+8243991 | None:intergenic |
| GTTTCAAAAGGTTCAACTGA+TGG | 0.554167 | 4_4:-8246360 | None:intergenic |
| AAGAGTGAAGAATCTGAAGA+TGG | 0.555921 | 4_4:+8246171 | Msa0667660:CDS |
| TGGATTACTCGATCCGACCC+CGG | 0.556713 | 4_4:-8245805 | None:intergenic |
| TGGCCATCAGACCATGTCAA+TGG | 0.562941 | 4_4:-8245312 | None:intergenic |
| TGTGTTCAGGATATGCCGGC+TGG | 0.568099 | 4_4:+8245724 | Msa0667660:intron |
| GTTTCATTTGGCATCAACAA+TGG | 0.568666 | 4_4:+8247552 | Msa0667660:CDS |
| AAATAAACCTGATGTTCAGA+TGG | 0.569578 | 4_4:-8244263 | None:intergenic |
| CTAACTCAACCCTACAAAGC+TGG | 0.577105 | 4_4:-8247971 | None:intergenic |
| GTTTCATTTGGCACCAACAA+TGG | 0.578517 | 4_4:+8248226 | Msa0667660:CDS |
| AATGAAGAACTTTCTCCTAG+TGG | 0.580536 | 4_4:-8248374 | None:intergenic |
| TCAGATGGCACAGCATGCAA+AGG | 0.583326 | 4_4:-8244248 | None:intergenic |
| CCAGCTTCTTCTTCAGTCAA+CGG | 0.590556 | 4_4:-8246297 | None:intergenic |
| TGGCATCAACAATGGAAGAA+GGG | 0.602203 | 4_4:+8247560 | Msa0667660:CDS |
| TGAAAATGTTCAGTTGAGCA+AGG | 0.604858 | 4_4:+8248121 | Msa0667660:intron |
| TAGATGCATTACCATTGACA+TGG | 0.613812 | 4_4:+8245301 | Msa0667660:CDS |
| TTACCATTGACATGGTCTGA+TGG | 0.617877 | 4_4:+8245309 | Msa0667660:CDS |
| ACTAAAAGATTGCGACTTTG+GGG | 0.619434 | 4_4:+8245227 | Msa0667660:CDS |
| GACACTTCTGGTAGAACCGG+AGG | 0.623619 | 4_4:-8245931 | None:intergenic |
| GGTGATATTATTTGGCAACC+GGG | 0.626598 | 4_4:+8245787 | Msa0667660:CDS |
| TGAAAATGCTCAGTTAAGCA+AGG | 0.630052 | 4_4:+8247453 | Msa0667660:intron |
| CTTACTGTCATGATCATCAG+TGG | 0.632273 | 4_4:-8246040 | None:intergenic |
| GAAACATGAAAAGCAACACT+AGG | 0.641404 | 4_4:-8244128 | None:intergenic |
| TTGAAGCTTGTACAAAACAA+GGG | 0.642132 | 4_4:+8244218 | Msa0667660:CDS |
| ACTTCAGAAAATAATAGAGG+AGG | 0.643677 | 4_4:+8245882 | Msa0667660:CDS |
| CCGTTGACTGAAGAAGAAGC+TGG | 0.654789 | 4_4:+8246297 | Msa0667660:CDS |
| GTGATATTATTTGGCAACCG+GGG | 0.662994 | 4_4:+8245788 | Msa0667660:CDS |
| TTCAACTGATGGCTCTACCA+CGG | 0.664103 | 4_4:-8246349 | None:intergenic |
| GGATCGAGTAATCCAAACAT+GGG | 0.665164 | 4_4:+8245813 | Msa0667660:CDS |
| ACTTTCTGTGAGATCCTCCG+AGG | 0.674643 | 4_4:-8246112 | None:intergenic |
| TTCATCAATAGAGAAGCCAA+TGG | 0.677851 | 4_4:+8246065 | Msa0667660:CDS |
| AAGTGTTTGATGGTGATGCA+TGG | 0.700705 | 4_4:+8248478 | Msa0667660:exon |
| CGAAAATATAGGTTCCTCGG+AGG | 0.707768 | 4_4:+8246098 | Msa0667660:CDS |
| TCAGGATCAGAATATACCAG+AGG | 0.719056 | 4_4:+8246383 | Msa0667660:CDS |
| TGTTGAAGAAGAAAAGACCG+TGG | 0.738151 | 4_4:+8246332 | Msa0667660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGATTTGAATTTGATAAAT+GGG | + | chr4_4:8244318-8244337 | Msa0667660:intron | 15.0% |
| !! | AAAACAAAAGTTTCTTAAAA+GGG | - | chr4_4:8244584-8244603 | None:intergenic | 15.0% |
| !! | AAAAACAAAAGTTTCTTAAA+AGG | - | chr4_4:8244585-8244604 | None:intergenic | 15.0% |
| !!! | AAACTTTTGTTTTTGTTTTT+TGG | + | chr4_4:8244591-8244610 | Msa0667660:intron | 15.0% |
| !! | ATATATGAGTCAAAATTAAT+TGG | + | chr4_4:8244735-8244754 | Msa0667660:intron | 15.0% |
| !!! | ACACACAAATTAAAATTTTA+GGG | - | chr4_4:8245166-8245185 | None:intergenic | 15.0% |
| !!! | AACACACAAATTAAAATTTT+AGG | - | chr4_4:8245167-8245186 | None:intergenic | 15.0% |
| !! | TCTTAATTTCAAAGATTTAA+CGG | - | chr4_4:8245586-8245605 | None:intergenic | 15.0% |
| !! | ATTAATGATAACAATCAATT+TGG | - | chr4_4:8246664-8246683 | None:intergenic | 15.0% |
| !! | ATAAAATGAGAAAATTTGTA+TGG | - | chr4_4:8247197-8247216 | None:intergenic | 15.0% |
| !!! | TTGCACATTTTTTTAATATA+TGG | + | chr4_4:8247364-8247383 | Msa0667660:intron | 15.0% |
| !!! | TCATTGCTTTAAATAATTAA+TGG | - | chr4_4:8248012-8248031 | None:intergenic | 15.0% |
| !!! | CTTGATTTGAATTTGATAAA+TGG | + | chr4_4:8244317-8244336 | Msa0667660:intron | 20.0% |
| !!! | TGTTTTTGTTTTTTGGTTTT+TGG | + | chr4_4:8244598-8244617 | Msa0667660:intron | 20.0% |
| !! | ATAACTTCAAATAGGAAAAA+GGG | - | chr4_4:8244636-8244655 | None:intergenic | 20.0% |
| !! | AATAACTTCAAATAGGAAAA+AGG | - | chr4_4:8244637-8244656 | None:intergenic | 20.0% |
| !! | AAAAGAGAATAACTTCAAAT+AGG | - | chr4_4:8244644-8244663 | None:intergenic | 20.0% |
| !! | ATATTTATGTAGAATTCAAG+AGG | + | chr4_4:8244712-8244731 | Msa0667660:intron | 20.0% |
| !! | TGATTGTTGTATATACATTA+AGG | + | chr4_4:8244803-8244822 | Msa0667660:intron | 20.0% |
| !! | GATTGTTGTATATACATTAA+GGG | + | chr4_4:8244804-8244823 | Msa0667660:intron | 20.0% |
| !! | ATCATTAAGATATTGTTTCA+TGG | + | chr4_4:8245373-8245392 | Msa0667660:intron | 20.0% |
| !! | AAATATAAACCACTACATAA+CGG | - | chr4_4:8245697-8245716 | None:intergenic | 20.0% |
| !!! | CTTTTAGTATAAACTTGTAT+AGG | - | chr4_4:8245759-8245778 | None:intergenic | 20.0% |
| !! | CTATACAAGTTTATACTAAA+AGG | + | chr4_4:8245757-8245776 | Msa0667660:CDS | 20.0% |
| !! | TTTATACTAAAAGGAAAAGA+AGG | + | chr4_4:8245766-8245785 | Msa0667660:CDS | 20.0% |
| !! | TATATAATCAATGCATCTTA+CGG | + | chr4_4:8246612-8246631 | Msa0667660:intron | 20.0% |
| !! | ATTAATGAACTTCATTATAG+TGG | - | chr4_4:8246701-8246720 | None:intergenic | 20.0% |
| !!! | AAATAAATTGTGTGTTGTTA+TGG | - | chr4_4:8246800-8246819 | None:intergenic | 20.0% |
| !!! | TATTTTAATCTGAAATAAGC+TGG | + | chr4_4:8246815-8246834 | Msa0667660:intron | 20.0% |
| !!! | ATATAATTTTAGTGCTTGTT+TGG | - | chr4_4:8247159-8247178 | None:intergenic | 20.0% |
| !! | AAGAGTTCTTGTAAATAAAA+CGG | - | chr4_4:8247881-8247900 | None:intergenic | 20.0% |
| !! | AAGAAGTTTCTAACAAAATT+TGG | + | chr4_4:8248323-8248342 | Msa0667660:intron | 20.0% |
| !!! | CTTTTTGCCTAAATTTTTAT+TGG | + | chr4_4:8248430-8248449 | Msa0667660:CDS | 20.0% |
| !!! | TTGTATTATTCTTTCAGTTT+TGG | + | chr4_4:8248577-8248596 | Msa0667660:three_prime_UTR | 20.0% |
| !! | TAAATTACATAGATTGTGTA+TGG | + | chr4_4:8248620-8248639 | Msa0667660:three_prime_UTR | 20.0% |
| !! | ACTTTATACTAAAAGATAAG+TGG | - | chr4_4:8248648-8248667 | None:intergenic | 20.0% |
| !!! | ACTTTTTTGTTCATTTCTGA+AGG | - | chr4_4:8244183-8244202 | None:intergenic | 25.0% |
| ! | TCAAATCAAGAACACAAATT+GGG | - | chr4_4:8244307-8244326 | None:intergenic | 25.0% |
| ! | TTCAAATCAAGAACACAAAT+TGG | - | chr4_4:8244308-8244327 | None:intergenic | 25.0% |
| ! | CATCATAGATTAAAACCAAA+AGG | - | chr4_4:8244403-8244422 | None:intergenic | 25.0% |
| !! | GATGTTACTGTTATACTTTT+TGG | + | chr4_4:8244488-8244507 | Msa0667660:intron | 25.0% |
| !!! | ATTGGTTTTTCTGTTTTTAG+TGG | + | chr4_4:8244753-8244772 | Msa0667660:intron | 25.0% |
| ! | ATATACATTAAGGGTCTATT+TGG | + | chr4_4:8244813-8244832 | Msa0667660:intron | 25.0% |
| ! | AGATTGTTTAAGTGAACTAA+TGG | + | chr4_4:8244877-8244896 | Msa0667660:intron | 25.0% |
| !!! | ACGCAAAAATAGCTTTATTT+TGG | + | chr4_4:8244985-8245004 | Msa0667660:intron | 25.0% |
| !! | TTGTTCTACATGAATTTTAC+AGG | + | chr4_4:8245027-8245046 | Msa0667660:intron | 25.0% |
| ! | AAAAGTGAAAACAACGTAAT+TGG | - | chr4_4:8245441-8245460 | None:intergenic | 25.0% |
| ! | GAAAAGAAGGTGATATTATT+TGG | + | chr4_4:8245779-8245798 | Msa0667660:CDS | 25.0% |
| ! | AATAATTGTTCTTGAGGATT+GGG | + | chr4_4:8245849-8245868 | Msa0667660:CDS | 25.0% |
| ! | AGAACTTCAGAAAATAATAG+AGG | + | chr4_4:8245879-8245898 | Msa0667660:CDS | 25.0% |
| ! | CAGCGTTAAAGAATAAAAAA+GGG | + | chr4_4:8246211-8246230 | Msa0667660:CDS | 25.0% |
| ! | ATGATGATACAAACAAAACA+AGG | - | chr4_4:8246525-8246544 | None:intergenic | 25.0% |
| ! | GATTATATATGTACGAAACA+AGG | - | chr4_4:8246601-8246620 | None:intergenic | 25.0% |
| !!! | GTTTGTTAAGTTTTTGTAAC+AGG | - | chr4_4:8247005-8247024 | None:intergenic | 25.0% |
| !!! | ACATTGGTTTAAATGATTAC+TGG | - | chr4_4:8247338-8247357 | None:intergenic | 25.0% |
| ! | AAAAAAGATGTCCAAAATCT+GGG | - | chr4_4:8247766-8247785 | None:intergenic | 25.0% |
| ! | AAAAAAAGATGTCCAAAATC+TGG | - | chr4_4:8247767-8247786 | None:intergenic | 25.0% |
| ! | AGAGTTCTTGTAAATAAAAC+GGG | - | chr4_4:8247880-8247899 | None:intergenic | 25.0% |
| ! | ATCAGATATATTCTAGTCAA+TGG | - | chr4_4:8247906-8247925 | None:intergenic | 25.0% |
| CTTAGAACTAAAACTTGTGA+AGG | - | chr4_4:8244078-8244097 | None:intergenic | 30.0% | |
| GAAAGAGTGAAACAAGAAAA+GGG | - | chr4_4:8244161-8244180 | None:intergenic | 30.0% | |
| AAGCTTCAAGAGACAAAAAA+TGG | - | chr4_4:8244207-8244226 | None:intergenic | 30.0% | |
| TTGAAGCTTGTACAAAACAA+GGG | + | chr4_4:8244218-8244237 | Msa0667660:CDS | 30.0% | |
| AAATAAACCTGATGTTCAGA+TGG | - | chr4_4:8244266-8244285 | None:intergenic | 30.0% | |
| CAAATCAAGAACACAAATTG+GGG | - | chr4_4:8244306-8244325 | None:intergenic | 30.0% | |
| ! | ATGGGTTGTAGTTATTTGTT+TGG | + | chr4_4:8244336-8244355 | Msa0667660:intron | 30.0% |
| TTGAGCTTATTTACTCACAT+AGG | + | chr4_4:8244846-8244865 | Msa0667660:intron | 30.0% | |
| ! | TTCTACATGAATTTTACAGG+AGG | + | chr4_4:8245030-8245049 | Msa0667660:intron | 30.0% |
| TACTAAAAGATTGCGACTTT+GGG | + | chr4_4:8245226-8245245 | Msa0667660:CDS | 30.0% | |
| ! | TCAATGGTAATGCATCTAAA+GGG | - | chr4_4:8245299-8245318 | None:intergenic | 30.0% |
| AAACAACGTAATTGGCAATT+CGG | - | chr4_4:8245433-8245452 | None:intergenic | 30.0% | |
| ! | ATATTTTTCGTCATGTGTTC+AGG | + | chr4_4:8245711-8245730 | Msa0667660:intron | 30.0% |
| GAACAGAATAATTGTTCTTG+AGG | + | chr4_4:8245843-8245862 | Msa0667660:CDS | 30.0% | |
| GAATAATTGTTCTTGAGGAT+TGG | + | chr4_4:8245848-8245867 | Msa0667660:CDS | 30.0% | |
| ACTTCAGAAAATAATAGAGG+AGG | + | chr4_4:8245882-8245901 | Msa0667660:CDS | 30.0% | |
| AATTTGTGTTTCTTCAATGC+TGG | - | chr4_4:8245977-8245996 | None:intergenic | 30.0% | |
| AGAAACACAAATTGATGCTT+TGG | + | chr4_4:8245984-8246003 | Msa0667660:CDS | 30.0% | |
| ! | TTTTTATTCTTTAACGCTGC+AGG | - | chr4_4:8246210-8246229 | None:intergenic | 30.0% |
| GCAGCGTTAAAGAATAAAAA+AGG | + | chr4_4:8246210-8246229 | Msa0667660:CDS | 30.0% | |
| TCAAACAATTTGAAAAGGAG+CGG | - | chr4_4:8246428-8246447 | None:intergenic | 30.0% | |
| CGGAATCAAACAATTTGAAA+AGG | - | chr4_4:8246433-8246452 | None:intergenic | 30.0% | |
| !! | CGAATGAGCTTTTAAAGAAA+CGG | - | chr4_4:8246453-8246472 | None:intergenic | 30.0% |
| ! | CGTTTCTTTAAAAGCTCATT+CGG | + | chr4_4:8246451-8246470 | Msa0667660:intron | 30.0% |
| ! | GTTTCTTTAAAAGCTCATTC+GGG | + | chr4_4:8246452-8246471 | Msa0667660:intron | 30.0% |
| ! | CTAATTAGTTCTTCTCTAAG+TGG | - | chr4_4:8246486-8246505 | None:intergenic | 30.0% |
| CACTTAGAGAAGAACTAATT+AGG | + | chr4_4:8246484-8246503 | Msa0667660:intron | 30.0% | |
| !! | GGTTTTAACAAAAAGGTTTG+CGG | - | chr4_4:8246975-8246994 | None:intergenic | 30.0% |
| !! | ATTTTAGTGCTTGTTTGGAT+TGG | - | chr4_4:8247154-8247173 | None:intergenic | 30.0% |
| CTTCTGATGAAAAAACAACA+GGG | + | chr4_4:8247274-8247293 | Msa0667660:intron | 30.0% | |
| ! | TTTACTTGTAGGCTTTAGTT+AGG | + | chr4_4:8247298-8247317 | Msa0667660:intron | 30.0% |
| AAATGTGCAAGTTTACACAT+TGG | - | chr4_4:8247354-8247373 | None:intergenic | 30.0% | |
| !!! | GATTGTTTTGATGTCAAATG+TGG | + | chr4_4:8247671-8247690 | Msa0667660:intron | 30.0% |
| GAGTTCTTGTAAATAAAACG+GGG | - | chr4_4:8247879-8247898 | None:intergenic | 30.0% | |
| TTAGATTCTTCTTCCATTGT+TGG | - | chr4_4:8248242-8248261 | None:intergenic | 30.0% | |
| ! | TATTATGCTGTCTTGTTACA+TGG | + | chr4_4:8248553-8248572 | Msa0667660:three_prime_UTR | 30.0% |
| CAACACAATGATGTTTGGTT+TGG | - | chr4_4:8244019-8244038 | None:intergenic | 35.0% | |
| CAACACAACACAATGATGTT+TGG | - | chr4_4:8244024-8244043 | None:intergenic | 35.0% | |
| AAGCCTATAGTTCATAAGCT+AGG | + | chr4_4:8244095-8244114 | Msa0667660:CDS | 35.0% | |
| GATCCTAGCTTATGAACTAT+AGG | - | chr4_4:8244101-8244120 | None:intergenic | 35.0% | |
| GAAACATGAAAAGCAACACT+AGG | - | chr4_4:8244131-8244150 | None:intergenic | 35.0% | |
| GGAAAGAGTGAAACAAGAAA+AGG | - | chr4_4:8244162-8244181 | None:intergenic | 35.0% | |
| CTTGAAGCTTGTACAAAACA+AGG | + | chr4_4:8244217-8244236 | Msa0667660:CDS | 35.0% | |
| !! | TTCCATGAGTTTGTTCCTTT+TGG | + | chr4_4:8244385-8244404 | Msa0667660:intron | 35.0% |
| AACCAAAAGGAACAAACTCA+TGG | - | chr4_4:8244390-8244409 | None:intergenic | 35.0% | |
| !! | GTTGTTCTTTGTTGTTGAAG+TGG | - | chr4_4:8244549-8244568 | None:intergenic | 35.0% |
| ! | TTTTCCATCCATGTCAATGA+TGG | + | chr4_4:8244660-8244679 | Msa0667660:intron | 35.0% |
| GTTATACTCCATCATTGACA+TGG | - | chr4_4:8244671-8244690 | None:intergenic | 35.0% | |
| GAGTGAAAGTTGTTAAGAAG+TGG | + | chr4_4:8244775-8244794 | Msa0667660:intron | 35.0% | |
| ! | AATTTTACAGGAGGTAGAGT+TGG | + | chr4_4:8245039-8245058 | Msa0667660:intron | 35.0% |
| AACAAAGCGAACAAACAAGT+AGG | + | chr4_4:8245083-8245102 | Msa0667660:intron | 35.0% | |
| AACAAACAAGTAGGTTCTAC+TGG | + | chr4_4:8245092-8245111 | Msa0667660:intron | 35.0% | |
| TTTAGGGATTTGAGTCCTAA+AGG | - | chr4_4:8245150-8245169 | None:intergenic | 35.0% | |
| CTACTAAAAGATTGCGACTT+TGG | + | chr4_4:8245225-8245244 | Msa0667660:CDS | 35.0% | |
| ACTAAAAGATTGCGACTTTG+GGG | + | chr4_4:8245227-8245246 | Msa0667660:CDS | 35.0% | |
| ATGATCCTAAGCTTGGTTTA+TGG | + | chr4_4:8245271-8245290 | Msa0667660:CDS | 35.0% | |
| ! | GTCAATGGTAATGCATCTAA+AGG | - | chr4_4:8245300-8245319 | None:intergenic | 35.0% |
| TAGATGCATTACCATTGACA+TGG | + | chr4_4:8245301-8245320 | Msa0667660:CDS | 35.0% | |
| CGGTAATAATAACGATTTCG+AGG | - | chr4_4:8245413-8245432 | None:intergenic | 35.0% | |
| TCCAAAATGTTCTCAAAACC+TGG | + | chr4_4:8245472-8245491 | Msa0667660:intron | 35.0% | |
| !! | TATAGGATTGATTTTCCAGC+CGG | - | chr4_4:8245742-8245761 | None:intergenic | 35.0% |
| AGGTGATATTATTTGGCAAC+CGG | + | chr4_4:8245786-8245805 | Msa0667660:CDS | 35.0% | |
| TGTTCATAGTTTCCCATGTT+TGG | - | chr4_4:8245828-8245847 | None:intergenic | 35.0% | |
| TTCATCAATAGAGAAGCCAA+TGG | + | chr4_4:8246065-8246084 | Msa0667660:CDS | 35.0% | |
| GCTATGTTTGCCGAAAATAT+AGG | + | chr4_4:8246087-8246106 | Msa0667660:CDS | 35.0% | |
| AAGAGTGAAGAATCTGAAGA+TGG | + | chr4_4:8246171-8246190 | Msa0667660:CDS | 35.0% | |
| GAATAAAAAAGGGACGATTG+TGG | + | chr4_4:8246221-8246240 | Msa0667660:CDS | 35.0% | |
| !! | GGAAGCTTAATCGATTTTGA+AGG | + | chr4_4:8246246-8246265 | Msa0667660:CDS | 35.0% |
| !! | AGCTTAATCGATTTTGAAGG+AGG | + | chr4_4:8246249-8246268 | Msa0667660:CDS | 35.0% |
| TCTTCTTCAACAACTTCACT+TGG | - | chr4_4:8246324-8246343 | None:intergenic | 35.0% | |
| GTTTCAAAAGGTTCAACTGA+TGG | - | chr4_4:8246363-8246382 | None:intergenic | 35.0% | |
| !!! | AGTTGAACCTTTTGAAACTC+AGG | + | chr4_4:8246365-8246384 | Msa0667660:CDS | 35.0% |
| TTCTGATCCTGAGTTTCAAA+AGG | - | chr4_4:8246375-8246394 | None:intergenic | 35.0% | |
| ATCTTACGGCCAAAAGAAAA+GGG | + | chr4_4:8246626-8246645 | Msa0667660:intron | 35.0% | |
| ! | CAATGTTTCCCCTTTTCTTT+TGG | - | chr4_4:8246638-8246657 | None:intergenic | 35.0% |
| ! | GAGATGTTACCATGAACTTT+TGG | + | chr4_4:8246757-8246776 | Msa0667660:intron | 35.0% |
| ATTCAACAGCCAAAAGTTCA+TGG | - | chr4_4:8246769-8246788 | None:intergenic | 35.0% | |
| !! | TCTGCAGGGTTTTAACAAAA+AGG | - | chr4_4:8246982-8247001 | None:intergenic | 35.0% |
| GCTTCTGATGAAAAAACAAC+AGG | + | chr4_4:8247273-8247292 | Msa0667660:intron | 35.0% | |
| TGAAAATGCTCAGTTAAGCA+AGG | + | chr4_4:8247453-8247472 | Msa0667660:intron | 35.0% | |
| GCATGAAGAACAGTTTCATT+TGG | + | chr4_4:8247540-8247559 | Msa0667660:CDS | 35.0% | |
| GTTTCATTTGGCATCAACAA+TGG | + | chr4_4:8247552-8247571 | Msa0667660:CDS | 35.0% | |
| !! | AAAGTCGATGCTAGTCTTAA+TGG | + | chr4_4:8248066-8248085 | Msa0667660:intron | 35.0% |
| TGAAAATGTTCAGTTGAGCA+AGG | + | chr4_4:8248121-8248140 | Msa0667660:intron | 35.0% | |
| GTACTTGTACTTATCTCTTG+TGG | - | chr4_4:8248170-8248189 | None:intergenic | 35.0% | |
| ACATGAAGAGCAGTTTCATT+TGG | + | chr4_4:8248214-8248233 | Msa0667660:CDS | 35.0% | |
| AATGAAGAACTTTCTCCTAG+TGG | - | chr4_4:8248377-8248396 | None:intergenic | 35.0% | |
| ! | TGCCTAAATTTTTATTGGCC+TGG | + | chr4_4:8248435-8248454 | Msa0667660:CDS | 35.0% |
| !! | GCCTAAATTTTTATTGGCCT+GGG | + | chr4_4:8248436-8248455 | Msa0667660:CDS | 35.0% |
| TCCCAGGCCAATAAAAATTT+AGG | - | chr4_4:8248440-8248459 | None:intergenic | 35.0% | |
| ! | TAAGAGCTCAAAGTGTTTGA+TGG | + | chr4_4:8248468-8248487 | Msa0667660:CDS | 35.0% |
| TACTCCATCATTGACATGGA+TGG | - | chr4_4:8244667-8244686 | None:intergenic | 40.0% | |
| ! | TGTTCGCTTTGTTGAACTTG+AGG | - | chr4_4:8245076-8245095 | None:intergenic | 40.0% |
| TCTTCTGCATGTCTTCCTTT+AGG | + | chr4_4:8245132-8245151 | Msa0667660:intron | 40.0% | |
| ! | CTTTGGGGAACAGTTTCTAA+TGG | + | chr4_4:8245242-8245261 | Msa0667660:CDS | 40.0% |
| TTACCATTGACATGGTCTGA+TGG | + | chr4_4:8245309-8245328 | Msa0667660:CDS | 40.0% | |
| !!! | GCCAGGTTTTGAGAACATTT+TGG | - | chr4_4:8245476-8245495 | None:intergenic | 40.0% |
| AAATGTTCTCAAAACCTGGC+TGG | + | chr4_4:8245476-8245495 | Msa0667660:intron | 40.0% | |
| ! | AACAACACTCTGGTTTCCAT+CGG | - | chr4_4:8245559-8245578 | None:intergenic | 40.0% |
| TAACGGTGAAAACAACACTC+TGG | - | chr4_4:8245569-8245588 | None:intergenic | 40.0% | |
| GGTGATATTATTTGGCAACC+GGG | + | chr4_4:8245787-8245806 | Msa0667660:CDS | 40.0% | |
| GTGATATTATTTGGCAACCG+GGG | + | chr4_4:8245788-8245807 | Msa0667660:CDS | 40.0% | |
| GGATCGAGTAATCCAAACAT+GGG | + | chr4_4:8245813-8245832 | Msa0667660:CDS | 40.0% | |
| TCAACCAAATGAAGAACCTC+CGG | + | chr4_4:8245915-8245934 | Msa0667660:CDS | 40.0% | |
| TCAGTAGAAGTTGACACTTC+TGG | - | chr4_4:8245946-8245965 | None:intergenic | 40.0% | |
| CTTACTGTCATGATCATCAG+TGG | - | chr4_4:8246043-8246062 | None:intergenic | 40.0% | |
| ! | TTTTCGGCAAACATAGCCAT+TGG | - | chr4_4:8246084-8246103 | None:intergenic | 40.0% |
| TGCCGAAAATATAGGTTCCT+CGG | + | chr4_4:8246095-8246114 | Msa0667660:CDS | 40.0% | |
| ! | CTCCGAGGAACCTATATTTT+CGG | - | chr4_4:8246100-8246119 | None:intergenic | 40.0% |
| TAAAAAAGGGACGATTGTGG+AGG | + | chr4_4:8246224-8246243 | Msa0667660:CDS | 40.0% | |
| AAAAAAGGGACGATTGTGGA+GGG | + | chr4_4:8246225-8246244 | Msa0667660:CDS | 40.0% | |
| ATTAAGCCAGGTACAAGAAC+AGG | - | chr4_4:8246276-8246295 | None:intergenic | 40.0% | |
| TGTTGAAGAAGAAAAGACCG+TGG | + | chr4_4:8246332-8246351 | Msa0667660:CDS | 40.0% | |
| TCAGGATCAGAATATACCAG+AGG | + | chr4_4:8246383-8246402 | Msa0667660:CDS | 40.0% | |
| CATCTTACGGCCAAAAGAAA+AGG | + | chr4_4:8246625-8246644 | Msa0667660:intron | 40.0% | |
| TCTTACGGCCAAAAGAAAAG+GGG | + | chr4_4:8246627-8246646 | Msa0667660:intron | 40.0% | |
| ! | TGCGATTTTCCGCAATATCA+AGG | - | chr4_4:8246872-8246891 | None:intergenic | 40.0% |
| ! | GTTTTTGTAACAGGTCTGCA+GGG | - | chr4_4:8246996-8247015 | None:intergenic | 40.0% |
| ! | AGTTTTTGTAACAGGTCTGC+AGG | - | chr4_4:8246997-8247016 | None:intergenic | 40.0% |
| !! | AGACACTTGGTAATGCTAGA+TGG | - | chr4_4:8247031-8247050 | None:intergenic | 40.0% |
| AGCATTACCAAGTGTCTGTT+TGG | + | chr4_4:8247034-8247053 | Msa0667660:intron | 40.0% | |
| ! | ATTGGTTCCAAACAGACACT+TGG | - | chr4_4:8247044-8247063 | None:intergenic | 40.0% |
| CGGTGAATTTGACACAATCA+TGG | - | chr4_4:8247131-8247150 | None:intergenic | 40.0% | |
| ! | TTAGTGCTTGTTTGGATTGG+CGG | - | chr4_4:8247151-8247170 | None:intergenic | 40.0% |
| AACAACAGGGCTTTACTTGT+AGG | + | chr4_4:8247287-8247306 | Msa0667660:intron | 40.0% | |
| TTGGCATCAACAATGGAAGA+AGG | + | chr4_4:8247559-8247578 | Msa0667660:CDS | 40.0% | |
| TGGCATCAACAATGGAAGAA+GGG | + | chr4_4:8247560-8247579 | Msa0667660:CDS | 40.0% | |
| TCAAACTCAGAGCCAATTCA+TGG | + | chr4_4:8247583-8247602 | Msa0667660:CDS | 40.0% | |
| GATGTATGCAACCTCAATTG+TGG | + | chr4_4:8247696-8247715 | Msa0667660:intron | 40.0% | |
| GAGTCTTTGCAACAAGTCTA+GGG | - | chr4_4:8247794-8247813 | None:intergenic | 40.0% | |
| TGAGTCTTTGCAACAAGTCT+AGG | - | chr4_4:8247795-8247814 | None:intergenic | 40.0% | |
| ACTTCCTGTGATATACCGTT+AGG | + | chr4_4:8247942-8247961 | Msa0667660:intron | 40.0% | |
| CTTCCTGTGATATACCGTTA+GGG | + | chr4_4:8247943-8247962 | Msa0667660:intron | 40.0% | |
| GTTTCATTTGGCACCAACAA+TGG | + | chr4_4:8248226-8248245 | Msa0667660:CDS | 40.0% | |
| TCTAACTCAGAGCCAATTCA+TGG | + | chr4_4:8248257-8248276 | Msa0667660:CDS | 40.0% | |
| CTTGCGAAATGACATCGAAT+GGG | + | chr4_4:8248286-8248305 | Msa0667660:intron | 40.0% | |
| TTGCGAAATGACATCGAATG+GGG | + | chr4_4:8248287-8248306 | Msa0667660:intron | 40.0% | |
| GAAACTTCTTTACCGTTTCG+CGG | - | chr4_4:8248313-8248332 | None:intergenic | 40.0% | |
| ! | CTCCTTTTTACAGAACCACT+AGG | + | chr4_4:8248359-8248378 | Msa0667660:intron | 40.0% |
| ! | CTCCTAGTGGTTCTGTAAAA+AGG | - | chr4_4:8248364-8248383 | None:intergenic | 40.0% |
| !! | TTTTATTGGCCTGGGAAAGA+TGG | + | chr4_4:8248444-8248463 | Msa0667660:CDS | 40.0% |
| !! | AAGTGTTTGATGGTGATGCA+TGG | + | chr4_4:8248478-8248497 | Msa0667660:exon | 40.0% |
| GGGGAACAGTTTCTAATGGT+TGG | + | chr4_4:8245246-8245265 | Msa0667660:CDS | 45.0% | |
| GTTGGAGATGATCCTAAGCT+TGG | + | chr4_4:8245264-8245283 | Msa0667660:CDS | 45.0% | |
| GGGTTCCATAAACCAAGCTT+AGG | - | chr4_4:8245279-8245298 | None:intergenic | 45.0% | |
| CATGGTCTGATGGCCATATA+TGG | + | chr4_4:8245319-8245338 | Msa0667660:CDS | 45.0% | |
| CCAGCTCAACAGTCCATATA+TGG | - | chr4_4:8245335-8245354 | None:intergenic | 45.0% | |
| ! | CCATATATGGACTGTTGAGC+TGG | + | chr4_4:8245332-8245351 | Msa0667660:CDS | 45.0% |
| ! | ACTCTGGTTTCCATCGGAAA+GGG | - | chr4_4:8245553-8245572 | None:intergenic | 45.0% |
| GAAAGCAGACCGTTATGTAG+TGG | + | chr4_4:8245685-8245704 | Msa0667660:intron | 45.0% | |
| GTCATGTGTTCAGGATATGC+CGG | + | chr4_4:8245720-8245739 | Msa0667660:intron | 45.0% | |
| TATTATTTGGCAACCGGGGT+CGG | + | chr4_4:8245792-8245811 | Msa0667660:CDS | 45.0% | |
| CGGATCGAGTAATCCAAACA+TGG | + | chr4_4:8245812-8245831 | Msa0667660:CDS | 45.0% | |
| AGAACCGGAGGTTCTTCATT+TGG | - | chr4_4:8245922-8245941 | None:intergenic | 45.0% | |
| GTTGACACTTCTGGTAGAAC+CGG | - | chr4_4:8245937-8245956 | None:intergenic | 45.0% | |
| !! | TCCAGGACTGGTTCATCAAT+TGG | - | chr4_4:8246015-8246034 | None:intergenic | 45.0% |
| !! | GATCATCAGTGGTTTGTTCC+AGG | - | chr4_4:8246032-8246051 | None:intergenic | 45.0% |
| CGAAAATATAGGTTCCTCGG+AGG | + | chr4_4:8246098-8246117 | Msa0667660:CDS | 45.0% | |
| TCAGTCAACGGTATTAAGCC+AGG | - | chr4_4:8246288-8246307 | None:intergenic | 45.0% | |
| CCAGCTTCTTCTTCAGTCAA+CGG | - | chr4_4:8246300-8246319 | None:intergenic | 45.0% | |
| ! | TTCAACTGATGGCTCTACCA+CGG | - | chr4_4:8246352-8246371 | None:intergenic | 45.0% |
| ! | AACAAGGTGATGATGAGCGT+TGG | - | chr4_4:8246585-8246604 | None:intergenic | 45.0% |
| AGTCGCGATCCTTGATATTG+CGG | + | chr4_4:8246860-8246879 | Msa0667660:intron | 45.0% | |
| AGTCTTTGCAACCACAACTG+AGG | - | chr4_4:8246919-8246938 | None:intergenic | 45.0% | |
| ! | TGTCTGTTTGGAACCAATCG+CGG | + | chr4_4:8247046-8247065 | Msa0667660:intron | 45.0% |
| ! | CATGGCGACTCATGGTATTT+TGG | - | chr4_4:8247113-8247132 | None:intergenic | 45.0% |
| ! | CGCAAGGCATTACCATGAAT+TGG | - | chr4_4:8247598-8247617 | None:intergenic | 45.0% |
| CTTGCGAAATGACATCCAGT+GGG | + | chr4_4:8247612-8247631 | Msa0667660:intron | 45.0% | |
| TTGCGAAATGACATCCAGTG+GGG | + | chr4_4:8247613-8247632 | Msa0667660:intron | 45.0% | |
| ! | CTCAATTGTGGTTTGCGTTG+CGG | + | chr4_4:8247708-8247727 | Msa0667660:intron | 45.0% |
| AATCTGGGCAGCAACATCAA+TGG | - | chr4_4:8247751-8247770 | None:intergenic | 45.0% | |
| ! | TGATGTTGCTGCCCAGATTT+TGG | + | chr4_4:8247752-8247771 | Msa0667660:intron | 45.0% |
| AAGCCCTAACGGTATATCAC+AGG | - | chr4_4:8247949-8247968 | None:intergenic | 45.0% | |
| CTAACTCAACCCTACAAAGC+TGG | - | chr4_4:8247974-8247993 | None:intergenic | 45.0% | |
| ! | CAGCTTTGTAGGGTTGAGTT+AGG | + | chr4_4:8247972-8247991 | Msa0667660:CDS | 45.0% |
| ! | CGCAAGGCATTACCATGAAT+TGG | - | chr4_4:8247598-8247617 | None:intergenic | 45.0% |
| ! | CCATTCGATGTCATTTCGCA+AGG | - | chr4_4:8248288-8248307 | None:intergenic | 45.0% |
| CCTTGCGAAATGACATCGAA+TGG | + | chr4_4:8248285-8248304 | Msa0667660:intron | 45.0% | |
| AGCTCTTATCCATCTTTCCC+AGG | - | chr4_4:8248456-8248475 | None:intergenic | 45.0% | |
| CAGATGGCACAGCATGCAAA+GGG | - | chr4_4:8244250-8244269 | None:intergenic | 50.0% | |
| TCAGATGGCACAGCATGCAA+AGG | - | chr4_4:8244251-8244270 | None:intergenic | 50.0% | |
| TGCTGTGCCATCTGAACATC+AGG | + | chr4_4:8244256-8244275 | Msa0667660:CDS | 50.0% | |
| TGGCCATCAGACCATGTCAA+TGG | - | chr4_4:8245315-8245334 | None:intergenic | 50.0% | |
| TGGTAATCCAGAGTTCGGTC+GGG | - | chr4_4:8245527-8245546 | None:intergenic | 50.0% | |
| CTGGTAATCCAGAGTTCGGT+CGG | - | chr4_4:8245528-8245547 | None:intergenic | 50.0% | |
| ! | GGCTCTGGTAATCCAGAGTT+CGG | - | chr4_4:8245532-8245551 | None:intergenic | 50.0% |
| ATTACCAGAGCCCTTTCCGA+TGG | + | chr4_4:8245540-8245559 | Msa0667660:intron | 50.0% | |
| ! | CACTCTGGTTTCCATCGGAA+AGG | - | chr4_4:8245554-8245573 | None:intergenic | 50.0% |
| GCCAATTGATGAACCAGTCC+TGG | + | chr4_4:8246011-8246030 | Msa0667660:CDS | 50.0% | |
| !! | TCAGTGGTTTGTTCCAGGAC+TGG | - | chr4_4:8246027-8246046 | None:intergenic | 50.0% |
| ACTTTCTGTGAGATCCTCCG+AGG | - | chr4_4:8246115-8246134 | None:intergenic | 50.0% | |
| ! | CCGTTGACTGAAGAAGAAGC+TGG | + | chr4_4:8246297-8246316 | Msa0667660:CDS | 50.0% |
| ACTCATCAAGCGGTTACCTC+TGG | - | chr4_4:8246402-8246421 | None:intergenic | 50.0% | |
| ! | GCTGGCAATGCTCTAAGTCA+TGG | + | chr4_4:8246833-8246852 | Msa0667660:intron | 50.0% |
| CGGAAAATCGCAGTCAAGTG+TGG | + | chr4_4:8246880-8246899 | Msa0667660:intron | 50.0% | |
| GATGCATGCAACCTCAGTTG+TGG | + | chr4_4:8246905-8246924 | Msa0667660:intron | 50.0% | |
| AAGGTTTGCGGCTGTGATCT+GGG | - | chr4_4:8246963-8246982 | None:intergenic | 50.0% | |
| AAAGGTTTGCGGCTGTGATC+TGG | - | chr4_4:8246964-8246983 | None:intergenic | 50.0% | |
| GACACAATCATGGCGACTCA+TGG | - | chr4_4:8247121-8247140 | None:intergenic | 50.0% | |
| ! | CCACTGGATGTCATTTCGCA+AGG | - | chr4_4:8247614-8247633 | None:intergenic | 50.0% |
| CCTTGCGAAATGACATCCAG+TGG | + | chr4_4:8247611-8247630 | Msa0667660:intron | 50.0% | |
| CGCAACGCAAACCACAATTG+AGG | - | chr4_4:8247710-8247729 | None:intergenic | 50.0% | |
| CAAAGCTGGTGAAGCCCTAA+CGG | - | chr4_4:8247960-8247979 | None:intergenic | 50.0% | |
| ! | TAGGGCTTCACCAGCTTTGT+AGG | + | chr4_4:8247961-8247980 | Msa0667660:intron | 50.0% |
| ! | AGGGCTTCACCAGCTTTGTA+GGG | + | chr4_4:8247962-8247981 | Msa0667660:intron | 50.0% |
| TAATCCAGAGTTCGGTCGGG+AGG | - | chr4_4:8245524-8245543 | None:intergenic | 55.0% | |
| GTTTCCATCGGAAAGGGCTC+TGG | - | chr4_4:8245547-8245566 | None:intergenic | 55.0% | |
| TGTGTTCAGGATATGCCGGC+TGG | + | chr4_4:8245724-8245743 | Msa0667660:intron | 55.0% | |
| TGGATTACTCGATCCGACCC+CGG | - | chr4_4:8245808-8245827 | None:intergenic | 55.0% | |
| GACACTTCTGGTAGAACCGG+AGG | - | chr4_4:8245934-8245953 | None:intergenic | 55.0% | |
| GGAGGTCCTGTTCTTGTACC+TGG | + | chr4_4:8246267-8246286 | Msa0667660:CDS | 55.0% | |
| ! | CTGTTTGGAACCAATCGCGG+TGG | + | chr4_4:8247049-8247068 | Msa0667660:intron | 55.0% |
| CATCCAGTGGGGCTTCGAAA+CGG | + | chr4_4:8247624-8247643 | Msa0667660:intron | 55.0% | |
| TTACCGTTTCGAAGCCCCAC+TGG | - | chr4_4:8247630-8247649 | None:intergenic | 55.0% | |
| AACCTGGCTGGAGCAGTCCT+TGG | + | chr4_4:8245488-8245507 | Msa0667660:intron | 60.0% | |
| CGGGAGGTGAAGTCTAGCCA+AGG | - | chr4_4:8245508-8245527 | None:intergenic | 60.0% | |
| TTCACCTCCCGACCGAACTC+TGG | + | chr4_4:8245517-8245536 | Msa0667660:intron | 60.0% | |
| GGAGCGGCACACTCATCAAG+CGG | - | chr4_4:8246412-8246431 | None:intergenic | 60.0% | |
| AATCACAGCGCCACCGCGAT+TGG | - | chr4_4:8247062-8247081 | None:intergenic | 60.0% | |
| CATCGAATGGGGCCGCGAAA+CGG | + | chr4_4:8248298-8248317 | Msa0667660:intron | 60.0% | |
| AGCCAAGGACTGCTCCAGCC+AGG | - | chr4_4:8245493-8245512 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 8243993 | 8248695 | 8243993 | ID=Msa0667660;Name=Msa0667660 |
| chr4_4 | mRNA | 8243993 | 8248695 | 8243993 | ID=Msa0667660-mRNA-1;Parent=Msa0667660;Name=Msa0667660-mRNA-1;_AED=0.12;_eAED=0.12;_QI=75|0.57|0.62|0.87|1|1|8|208|502 |
| chr4_4 | exon | 8243993 | 8244277 | 8243993 | ID=Msa0667660-mRNA-1:exon:2664;Parent=Msa0667660-mRNA-1 |
| chr4_4 | exon | 8245073 | 8245100 | 8245073 | ID=Msa0667660-mRNA-1:exon:2665;Parent=Msa0667660-mRNA-1 |
| chr4_4 | exon | 8245193 | 8245353 | 8245193 | ID=Msa0667660-mRNA-1:exon:2666;Parent=Msa0667660-mRNA-1 |
| chr4_4 | exon | 8245733 | 8246404 | 8245733 | ID=Msa0667660-mRNA-1:exon:2667;Parent=Msa0667660-mRNA-1 |
| chr4_4 | exon | 8247466 | 8247604 | 8247466 | ID=Msa0667660-mRNA-1:exon:2668;Parent=Msa0667660-mRNA-1 |
| chr4_4 | exon | 8247964 | 8248001 | 8247964 | ID=Msa0667660-mRNA-1:exon:2669;Parent=Msa0667660-mRNA-1 |
| chr4_4 | exon | 8248134 | 8248278 | 8248134 | ID=Msa0667660-mRNA-1:exon:2670;Parent=Msa0667660-mRNA-1 |
| chr4_4 | exon | 8248372 | 8248695 | 8248372 | ID=Msa0667660-mRNA-1:exon:2671;Parent=Msa0667660-mRNA-1 |
| chr4_4 | five_prime_UTR | 8243993 | 8244067 | 8243993 | ID=Msa0667660-mRNA-1:five_prime_utr;Parent=Msa0667660-mRNA-1 |
| chr4_4 | CDS | 8244068 | 8244277 | 8244068 | ID=Msa0667660-mRNA-1:cds;Parent=Msa0667660-mRNA-1 |
| chr4_4 | CDS | 8245073 | 8245100 | 8245073 | ID=Msa0667660-mRNA-1:cds;Parent=Msa0667660-mRNA-1 |
| chr4_4 | CDS | 8245193 | 8245353 | 8245193 | ID=Msa0667660-mRNA-1:cds;Parent=Msa0667660-mRNA-1 |
| chr4_4 | CDS | 8245733 | 8246404 | 8245733 | ID=Msa0667660-mRNA-1:cds;Parent=Msa0667660-mRNA-1 |
| chr4_4 | CDS | 8247466 | 8247604 | 8247466 | ID=Msa0667660-mRNA-1:cds;Parent=Msa0667660-mRNA-1 |
| chr4_4 | CDS | 8247964 | 8248001 | 8247964 | ID=Msa0667660-mRNA-1:cds;Parent=Msa0667660-mRNA-1 |
| chr4_4 | CDS | 8248134 | 8248278 | 8248134 | ID=Msa0667660-mRNA-1:cds;Parent=Msa0667660-mRNA-1 |
| chr4_4 | CDS | 8248372 | 8248487 | 8248372 | ID=Msa0667660-mRNA-1:cds;Parent=Msa0667660-mRNA-1 |
| chr4_4 | three_prime_UTR | 8248488 | 8248695 | 8248488 | ID=Msa0667660-mRNA-1:three_prime_utr;Parent=Msa0667660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
