AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0688480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0688480 MtrunA17_Chr8g0392301 92.661 109 8 0 5 113 875 983 1.62e-64 217
Msa0688480 MtrunA17_Chr8g0392301 75.188 133 12 2 132 243 116 248 1.51e-54 189
Msa0688480 MtrunA17_Chr8g0377481 64.815 108 31 1 5 112 855 955 7.45e-40 147
Msa0688480 MtrunA17_Chr8g0377481 45.638 149 44 3 132 243 111 259 2.83e-27 110
Msa0688480 MtrunA17_Chr3g0122391 62.963 108 32 1 5 112 913 1012 4.41e-37 139
Msa0688480 MtrunA17_Chr3g0122391 46.980 149 42 3 132 243 159 307 4.24e-28 113
Msa0688480 MtrunA17_Chr5g0447641 57.265 117 41 2 4 113 1087 1201 4.58e-35 133
Msa0688480 MtrunA17_Chr5g0447641 45.223 157 50 4 125 246 332 487 2.19e-29 117
Msa0688480 MtrunA17_Chr2g0311191 67.442 86 18 3 174 258 22 98 5.04e-26 102
Msa0688480 MtrunA17_Chr3g0136601 31.148 122 71 2 1 110 814 934 1.45e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0688480 AT2G01830.2 69.725 109 26 1 5 113 959 1060 2.43e-43 157
Msa0688480 AT2G01830.2 65.909 132 23 3 132 241 204 335 3.18e-43 157
Msa0688480 AT2G01830.1 69.725 109 26 1 5 113 936 1037 2.59e-43 157
Msa0688480 AT2G01830.1 65.909 132 23 3 132 241 181 312 3.32e-43 157
Msa0688480 AT2G01830.4 69.725 109 26 1 5 113 936 1037 2.59e-43 157
Msa0688480 AT2G01830.4 65.909 132 23 3 132 241 181 312 3.32e-43 157
Msa0688480 AT2G01830.6 69.725 109 26 1 5 113 936 1037 2.59e-43 157
Msa0688480 AT2G01830.6 65.909 132 23 3 132 241 181 312 3.32e-43 157
Msa0688480 AT2G01830.3 69.725 109 26 1 5 113 936 1037 2.59e-43 157
Msa0688480 AT2G01830.3 65.909 132 23 3 132 241 181 312 3.32e-43 157
Msa0688480 AT2G01830.5 69.725 109 26 1 5 113 948 1049 2.65e-43 157
Msa0688480 AT2G01830.5 65.909 132 23 3 132 241 193 324 2.86e-43 157
Msa0688480 AT1G27320.1 64.103 117 37 2 1 112 900 1016 9.14e-43 156
Msa0688480 AT1G27320.1 44.295 149 46 3 132 243 169 317 7.23e-26 107
Msa0688480 AT5G35750.1 64.103 117 37 2 5 116 1049 1165 6.56e-42 153
Msa0688480 AT5G35750.1 48.667 150 42 3 132 246 308 457 2.96e-31 122

Find 364 sgRNAs with CRISPR-Local

Find 714 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCTGCACCTTTCTCTTTC+TGG 0.090871 4_4:-54504907 None:intergenic
CCTTGAGCTGTCTAGAAATT+TGG 0.120024 4_4:+54502083 Msa0688480:five_prime_UTR
ACCTTCTTCACCTCAGTTAT+TGG 0.154797 4_4:-54508150 None:intergenic
CATTATTAAGTTTGTACTTT+TGG 0.162606 4_4:+54503207 Msa0688480:five_prime_UTR
TAAATTCCGTTTACCTATAT+TGG 0.165693 4_4:+54509564 Msa0688480:CDS
ACACTGCCAGTTATGAATTT+TGG 0.177356 4_4:-54507370 None:intergenic
AGCTACTGGTAAAGCATTTC+TGG 0.184947 4_4:+54506558 Msa0688480:five_prime_UTR
TGTAATCTCAAAACGCTAAA+TGG 0.252633 4_4:+54507754 Msa0688480:five_prime_UTR
GCTGTGCTCGTTGGCTCTTT+TGG 0.262041 4_4:+54511364 Msa0688480:three_prime_UTR
AGCTTGCCTTCAGCAAGTTT+TGG 0.267697 4_4:+54508833 Msa0688480:five_prime_UTR
TTTCACATTACTATTACTAT+TGG 0.267792 4_4:+54511595 Msa0688480:three_prime_UTR
TGAGAACCCAACAACCTAAA+AGG 0.270552 4_4:-54506586 None:intergenic
TGAGAACCCAACAACCTAAA+AGG 0.270552 4_4:-54510567 None:intergenic
TTGAAGCAACTCGTCGAATT+CGG 0.272691 4_4:+54509485 Msa0688480:CDS
AGTGAGAAGGAAAGAGGTTT+TGG 0.273718 4_4:+54505952 Msa0688480:five_prime_UTR
AATAAATTTATCGGGCCTTT+TGG 0.277715 4_4:+54511289 Msa0688480:three_prime_UTR
TCCAATCTGAAGCTCGAAAA+TGG 0.279042 4_4:+54501346 Msa0688480:five_prime_UTR
AGCTCTTCTGTTGTTGGGTT+GGG 0.283441 4_4:-54510639 None:intergenic
ATTGGTTGCCATACATGATT+AGG 0.284727 4_4:-54507086 None:intergenic
AAGAATATTGTTCTTATAGA+AGG 0.285105 4_4:+54503504 Msa0688480:five_prime_UTR
TCTGATTAAGATTAATGTTA+TGG 0.285743 4_4:+54507398 Msa0688480:five_prime_UTR
CTAAGCGCGAGACTAATATT+TGG 0.289326 4_4:+54511330 Msa0688480:three_prime_UTR
AGCTGGAGATATCAAGAAAT+TGG 0.296400 4_4:+54504592 Msa0688480:five_prime_UTR
CAAAAGTACAAACTTAATAA+TGG 0.297310 4_4:-54503206 None:intergenic
TGAATGCTTGGATATCTATT+AGG 0.305363 4_4:-54503735 None:intergenic
AAAACTCTTCATCAGCAATT+AGG 0.316824 4_4:-54507830 None:intergenic
TGAAGCAACTCGTCGAATTC+GGG 0.321951 4_4:+54509486 Msa0688480:CDS
CCATTATCTCTTTCCTATAC+AGG 0.329932 4_4:+54504977 Msa0688480:five_prime_UTR
TAGAAAATAGAAGTTTATAG+AGG 0.332862 4_4:-54503594 None:intergenic
GTCAAAATAAATAAATTTAT+CGG 0.334602 4_4:+54511280 Msa0688480:three_prime_UTR
GTAACAAAGCACATATAAAA+AGG 0.337845 4_4:+54504861 Msa0688480:five_prime_UTR
CTGATTAAGATTAATGTTAT+GGG 0.339688 4_4:+54507399 Msa0688480:five_prime_UTR
GAGTGCAGAAGTAATGTAAA+AGG 0.340817 4_4:+54504676 Msa0688480:five_prime_UTR
GGCTTTAAACCCTCTAAAAC+TGG 0.340964 4_4:-54508193 None:intergenic
GTGTTAGCTGGTGTTGTAAT+GGG 0.347004 4_4:+54505737 Msa0688480:intron
TTCACATTACTATTACTATT+GGG 0.347971 4_4:+54511596 Msa0688480:three_prime_UTR
AGCTCTTATGTTGTTGGGTT+GGG 0.355867 4_4:-54506658 None:intergenic
ATCTAGACTCCGACACGTTC+CGG 0.356468 4_4:+54511235 Msa0688480:three_prime_UTR
ATGTGCTAAACTCCGCATTC+TGG 0.359839 4_4:-54511147 None:intergenic
CTCTGAATCTGAACAGTCTT+AGG 0.361731 4_4:-54501991 None:intergenic
CAAGTTTGATGCTTGCTTCA+AGG 0.362213 4_4:+54509050 Msa0688480:CDS
CTAACAACCCTCTTACTCAT+TGG 0.363261 4_4:+54505014 Msa0688480:five_prime_UTR
GGGAGCTTAAATTTGTAAAC+AGG 0.365651 4_4:-54506634 None:intergenic
GGGAGCTTAAATTTGTAAAC+AGG 0.365651 4_4:-54510615 None:intergenic
AAACATCACCTTCTTTGTAT+TGG 0.366658 4_4:-54507104 None:intergenic
CCTCGTCGCAATGGCGGTTC+CGG 0.368561 4_4:+54504763 Msa0688480:five_prime_UTR
TAATGAGCTCTTATGTTGTT+GGG 0.369742 4_4:-54506663 None:intergenic
TTAATGAGCTCTTCTGTTGT+TGG 0.370178 4_4:-54510645 None:intergenic
CTTAGGCCACTTGTCGAATC+TGG 0.370934 4_4:-54501974 None:intergenic
TATCCGTGTATCAGTCTATA+TGG 0.371241 4_4:+54502147 Msa0688480:five_prime_UTR
TCTAATCCTATTTGATCTCC+TGG 0.371886 4_4:-54503775 None:intergenic
AATTTACTTGGTCAACTTGC+TGG 0.372381 4_4:+54507029 Msa0688480:five_prime_UTR
AACTTTCAGGTTGGGTCTGC+CGG 0.373589 4_4:-54511254 None:intergenic
GGATATTCAAATGCAAGAAA+TGG 0.373656 4_4:+54509071 Msa0688480:CDS
TTTAAAGCCGTTGTGGTTGA+TGG 0.373929 4_4:+54508207 Msa0688480:five_prime_UTR
TTGACTCCAACTTTCAGGTT+GGG 0.377248 4_4:-54511262 None:intergenic
AGTCGCAAACGCCATCAATA+AGG 0.379169 4_4:+54508290 Msa0688480:five_prime_UTR
TTATTGCATCTACAGCAAAA+TGG 0.379494 4_4:+54505916 Msa0688480:five_prime_UTR
GATCTTCAGTGTGCGGCAAC+TGG 0.379917 4_4:+54508670 Msa0688480:five_prime_UTR
GAAACAATGTTTACCTGTAT+AGG 0.381243 4_4:-54504990 None:intergenic
TAATGAGCTCTTCTGTTGTT+GGG 0.382581 4_4:-54510644 None:intergenic
GCATGACGACTTGGATTTCA+TGG 0.383364 4_4:+54511203 Msa0688480:three_prime_UTR
TTAATGAGCTCTTATGTTGT+TGG 0.383934 4_4:-54506664 None:intergenic
TTGGTTGCCATACATGATTA+GGG 0.384098 4_4:-54507085 None:intergenic
CTAGTCACAGCAGCTCTAAC+AGG 0.385909 4_4:-54508234 None:intergenic
TCAAGCTTTCCATTTGTTGC+GGG 0.386642 4_4:-54507682 None:intergenic
ATTTAATGGACCACACACTA+TGG 0.386966 4_4:+54503365 Msa0688480:five_prime_UTR
TTTCACTTCGCAAATTTCAT+TGG 0.387078 4_4:+54501425 Msa0688480:five_prime_UTR
AAAGAGAGGCTTCACAGGTT+AGG 0.389296 4_4:+54506340 Msa0688480:five_prime_UTR
AAAGAGAGGCTTCACAGGTT+AGG 0.389296 4_4:+54510326 Msa0688480:CDS
AACTTGTTGATGCTTCAATA+TGG 0.391748 4_4:-54503675 None:intergenic
GAAAACCCAGGAGATCAAAT+AGG 0.395401 4_4:+54503769 Msa0688480:five_prime_UTR
GCTACAAATTCAATTAATAA+AGG 0.396305 4_4:-54503555 None:intergenic
TCTGCTGTCATGGCCAATAT+AGG 0.397938 4_4:-54509577 None:intergenic
TTATGAACAAGTCACCTAGA+TGG 0.407870 4_4:+54507893 Msa0688480:five_prime_UTR
CTTCTGTTGTTGGGTTGGGA+GGG 0.408038 4_4:-54510635 None:intergenic
TGAACAATTCCTTCCTCAAA+AGG 0.408776 4_4:-54509661 None:intergenic
TGGGTAGTCTTTGTGATCAA+AGG 0.412517 4_4:+54505972 Msa0688480:five_prime_UTR
TAAGTGCCTAGCTGAACTAA+TGG 0.413074 4_4:+54508044 Msa0688480:five_prime_UTR
TGTGTCGAAGACACTGGAAT+TGG 0.420012 4_4:+54507919 Msa0688480:five_prime_UTR
CACAGAACCCAATGAGTAAG+AGG 0.421143 4_4:-54505022 None:intergenic
GTTGCTTTGTATTCTTCTGA+TGG 0.422242 4_4:+54505883 Msa0688480:five_prime_UTR
CTCAAGCTTTCCATTTGTTG+CGG 0.424158 4_4:-54507683 None:intergenic
ACCGAGCCAAAATTCATAAC+TGG 0.425503 4_4:+54507364 Msa0688480:five_prime_UTR
AACTATGGTGGTACCGGCAT+TGG 0.427397 4_4:+54508009 Msa0688480:five_prime_UTR
ATGAAGGTGGTGGAGGGGAA+AGG 0.429376 4_4:+54504210 Msa0688480:intron
TAACAACCCTCTTACTCATT+GGG 0.429622 4_4:+54505015 Msa0688480:five_prime_UTR
TGAAATTTGCGAAGTGAAAA+CGG 0.429932 4_4:-54501421 None:intergenic
CCAATCGGATATTGAATGCT+TGG 0.430148 4_4:-54503747 None:intergenic
CCTGTATAGGAAAGAGATAA+TGG 0.430433 4_4:-54504977 None:intergenic
AGCTCGACTTCTAGAAACTA+TGG 0.431958 4_4:+54507994 Msa0688480:five_prime_UTR
GAGCTCTTCTGTTGTTGGGT+TGG 0.436168 4_4:-54510640 None:intergenic
AAGAGAGGCTTCACAGGTTA+GGG 0.436592 4_4:+54506341 Msa0688480:five_prime_UTR
AAGAGAGGCTTCACAGGTTA+GGG 0.436592 4_4:+54510327 Msa0688480:CDS
TTTATAAGCCAGCCGCAGAT+TGG 0.437065 4_4:+54508081 Msa0688480:five_prime_UTR
GGCTTCTACGGGTAATGTTG+TGG 0.441520 4_4:+54511179 Msa0688480:exon
CGAGTTAACTCTTTGTGCAT+TGG 0.441555 4_4:-54506268 None:intergenic
AGTGTTAGCTGGTGTTGTAA+TGG 0.441960 4_4:+54505736 Msa0688480:intron
TTAATTGGAGGTAGTTATGT+TGG 0.442968 4_4:+54506975 Msa0688480:intron
TATCAGTCTATATGGTTTGT+AGG 0.444423 4_4:+54502155 Msa0688480:five_prime_UTR
AGCGGTCCTAGCCGTATATT+CGG 0.445484 4_4:-54506217 None:intergenic
ACCGGAGATGAAGGTGGTGG+AGG 0.445680 4_4:+54504203 Msa0688480:intron
GTTGGTGGCGATGGCGGTTG+CGG 0.446160 4_4:+54504302 Msa0688480:five_prime_UTR
AATAGAAAGCCCGCAACAAA+TGG 0.447886 4_4:+54507673 Msa0688480:five_prime_UTR
GCTTCTACGGGTAATGTTGT+GGG 0.449565 4_4:+54511180 Msa0688480:exon
TCCCTTGTGGAAAATTTACT+TGG 0.449628 4_4:+54507017 Msa0688480:five_prime_UTR
TCTTCTGTTGTTGGGTTGGG+AGG 0.450263 4_4:-54510636 None:intergenic
GCCACCACCACCTTCAGCTC+CGG 0.450368 4_4:-54503850 None:intergenic
CCGGAGATGAAGGTGGTGGA+GGG 0.450669 4_4:+54504204 Msa0688480:intron
CAAAGAAACAGCCTTATTGA+TGG 0.453163 4_4:-54508301 None:intergenic
TAAGCGCGAGACTAATATTT+GGG 0.454578 4_4:+54511331 Msa0688480:three_prime_UTR
GAAGAAGTTGTGCATACATC+TGG 0.454754 4_4:+54507727 Msa0688480:five_prime_UTR
CATACGGGGACTGGCTTCTA+CGG 0.455310 4_4:+54511167 Msa0688480:CDS
ACTTGAACCTTCAGCTGAAA+AGG 0.457162 4_4:-54503649 None:intergenic
TTTCAACATTTAGCATGTAC+TGG 0.457331 4_4:+54502259 Msa0688480:five_prime_UTR
AGATGTATGCACAACTTCTT+CGG 0.457816 4_4:-54507725 None:intergenic
TCAAAATAAATAAATTTATC+GGG 0.458085 4_4:+54511281 Msa0688480:three_prime_UTR
TTCAAAGTTCCAAGAACAAA+CGG 0.459844 4_4:+54505805 Msa0688480:five_prime_UTR
GGGTAGTCTTTGTGATCAAA+GGG 0.462700 4_4:+54505973 Msa0688480:five_prime_UTR
TCCAATAACTGAGGTGAAGA+AGG 0.463469 4_4:+54508149 Msa0688480:five_prime_UTR
TCAAAGTTCCAAGAACAAAC+GGG 0.463568 4_4:+54505806 Msa0688480:five_prime_UTR
AATAAGGCTGTTTCTTTGTG+TGG 0.465190 4_4:+54508306 Msa0688480:five_prime_UTR
GCAAAATCAGCACCACCCTT+TGG 0.468680 4_4:+54505781 Msa0688480:five_prime_UTR
GCAAAATCAGCACCACCCTT+TGG 0.468680 4_4:+54510153 Msa0688480:CDS
TCTTATGTTGTTGGGTTGGG+AGG 0.468813 4_4:-54506655 None:intergenic
GTGACGGCCACACCTGATAT+AGG 0.469948 4_4:+54504703 Msa0688480:five_prime_UTR
CTTATGTTGTTGGGTTGGGA+GGG 0.470141 4_4:-54506654 None:intergenic
ATGGATGAAGTTGGTGGCGA+TGG 0.473168 4_4:+54504293 Msa0688480:five_prime_UTR
CTTGGAACTTTGAAGCCAAA+GGG 0.475089 4_4:-54505796 None:intergenic
TTTGACTCCAACTTTCAGGT+TGG 0.476261 4_4:-54511263 None:intergenic
CAGAAGTAATGTAAAAGGTA+AGG 0.479588 4_4:+54504681 Msa0688480:five_prime_UTR
GAGCTCTTATGTTGTTGGGT+TGG 0.479818 4_4:-54506659 None:intergenic
AACATACTGAGAGCTCCTAC+TGG 0.482031 4_4:+54510525 Msa0688480:CDS
AGATACCATTTGAAGAGACT+TGG 0.482768 4_4:+54508255 Msa0688480:five_prime_UTR
ACTGATCCCCTAATCATGTA+TGG 0.483235 4_4:+54507078 Msa0688480:five_prime_UTR
AGGACCGATGGAGTTGTAGA+TGG 0.484578 4_4:+54504233 Msa0688480:five_prime_UTR
ACTATTGCTGCTGTGCTCGT+TGG 0.485368 4_4:+54511355 Msa0688480:three_prime_UTR
CATGGGTTTGTGGAGAGGAC+GGG 0.486989 4_4:+54508648 Msa0688480:five_prime_UTR
GAGCTATCTGCCTTCACAAA+AGG 0.487515 4_4:-54507976 None:intergenic
AGACGAACAAACTACCAATC+TGG 0.488070 4_4:+54504931 Msa0688480:five_prime_UTR
TCTTCGACACAGACCCATCT+AGG 0.488222 4_4:-54507907 None:intergenic
AAAATCCGCGGTAAATGAAA+AGG 0.489053 4_4:-54508109 None:intergenic
TATGAACAAGTCACCTAGAT+GGG 0.489195 4_4:+54507894 Msa0688480:five_prime_UTR
ATAAGGCTGTTTCTTTGTGT+GGG 0.489234 4_4:+54508307 Msa0688480:five_prime_UTR
TTGTAGATGGTGGTGGCGAA+AGG 0.493499 4_4:+54504246 Msa0688480:five_prime_UTR
GAGAACCCAACAACCTAAAA+GGG 0.497618 4_4:-54506585 None:intergenic
GAGAACCCAACAACCTAAAA+GGG 0.497618 4_4:-54510566 None:intergenic
GTTGAAGTTGGCGGTGGCAC+CGG 0.498250 4_4:+54503831 Msa0688480:five_prime_UTR
GTATCCCAAGTCTCTTCAAA+TGG 0.499078 4_4:-54508260 None:intergenic
AAGTGCCTAGCTGAACTAAT+GGG 0.499182 4_4:+54508045 Msa0688480:five_prime_UTR
TCATGGCCAATATAGGTAAA+CGG 0.499301 4_4:-54509570 None:intergenic
TCTGAAAATATCACGCCAAA+AGG 0.500549 4_4:-54511304 None:intergenic
TTCAGATTCAGAGGAAGAAG+AGG 0.501652 4_4:+54502001 Msa0688480:five_prime_UTR
TCTTGTAACTTTGAAGCCAA+AGG 0.501836 4_4:-54510169 None:intergenic
GTGAATAAACACGCTCTTGG+TGG 0.502131 4_4:+54511528 Msa0688480:three_prime_UTR
GAGTTCGATGCGATGGCGAA+AGG 0.502422 4_4:+54503796 Msa0688480:five_prime_UTR
AAGCTTGAGACTTATCGAAA+TGG 0.503401 4_4:+54507697 Msa0688480:five_prime_UTR
AATGGAAAGAGAGGCTTCAC+AGG 0.503470 4_4:+54506335 Msa0688480:five_prime_UTR
AATGGAAAGAGAGGCTTCAC+AGG 0.503470 4_4:+54510321 Msa0688480:CDS
GGCGGTGGCACCGGAGCTGA+AGG 0.503621 4_4:+54503840 Msa0688480:five_prime_UTR
CTTGTAACTTTGAAGCCAAA+GGG 0.504290 4_4:-54510168 None:intergenic
TACTAAAGTGAGAAGGAAAG+AGG 0.504630 4_4:+54505946 Msa0688480:five_prime_UTR
CTAATCCTATTTGATCTCCT+GGG 0.505911 4_4:-54503774 None:intergenic
TTAAAGCCGTTGTGGTTGAT+GGG 0.511535 4_4:+54508208 Msa0688480:five_prime_UTR
GGCAGACCCAACCTGAAAGT+TGG 0.512293 4_4:+54511256 Msa0688480:three_prime_UTR
ATTGGAGGTAGTTATGTTGG+AGG 0.513150 4_4:+54506978 Msa0688480:intron
TGAGCTATCTTGATGGATGT+AGG 0.513496 4_4:+54503094 Msa0688480:five_prime_UTR
GATGGCGGTTGCGGTGGTGT+TGG 0.513633 4_4:+54504311 Msa0688480:five_prime_UTR
AATGCGGAGTTTAGCACATA+CGG 0.514945 4_4:+54511151 Msa0688480:CDS
ATTAGGGCAATGGATGAAGT+TGG 0.517441 4_4:+54504284 Msa0688480:five_prime_UTR
AGTTTAGCACATACGGGGAC+TGG 0.518029 4_4:+54511158 Msa0688480:CDS
AGAAAATAGAAGTTTATAGA+GGG 0.518998 4_4:-54503593 None:intergenic
TTAACATGGTTTAATCATTG+AGG 0.522179 4_4:-54502991 None:intergenic
TCATGGGTTTGTGGAGAGGA+CGG 0.522273 4_4:+54508647 Msa0688480:five_prime_UTR
TTCAAATGCAAGAAATGGAC+GGG 0.522978 4_4:+54509076 Msa0688480:CDS
ATGAAGAGTGTTTGAAATGT+GGG 0.523905 4_4:+54509617 Msa0688480:CDS
AACACTCTTCATATGTAGCA+TGG 0.525664 4_4:-54509606 None:intergenic
GAAGCCACTGAGAACTAGTA+TGG 0.525821 4_4:+54508806 Msa0688480:five_prime_UTR
GGAGGGGAAAGGAGGACCGA+TGG 0.526035 4_4:+54504221 Msa0688480:five_prime_UTR
ATAATGATAGCTAGAGCTAC+TGG 0.526297 4_4:+54506544 Msa0688480:five_prime_UTR
GGAGATGTACATGGTGGTTG+TGG 0.527779 4_4:+54504338 Msa0688480:five_prime_UTR
GATGGAGAGGACGGCGAATG+AGG 0.528403 4_4:+54509510 Msa0688480:CDS
GAGCTATCTTGATGGATGTA+GGG 0.529146 4_4:+54503095 Msa0688480:five_prime_UTR
CAAATTGTAACAAATCTAGT+TGG 0.529505 4_4:+54507431 Msa0688480:five_prime_UTR
ATTGTGAATAAACACGCTCT+TGG 0.529790 4_4:+54511525 Msa0688480:three_prime_UTR
ATGGATTACATCTGCTGTCA+TGG 0.530208 4_4:-54509587 None:intergenic
CTATTGATATGATGTCTTGA+GGG 0.530839 4_4:+54506415 Msa0688480:five_prime_UTR
AGTCTGAAAGGAGATTAAAC+AGG 0.531683 4_4:-54501266 None:intergenic
AATCTAGTCCAGAAAGAGAA+AGG 0.531970 4_4:+54504899 Msa0688480:five_prime_UTR
CCAAATTTCTAGACAGCTCA+AGG 0.532517 4_4:-54502083 None:intergenic
CAAACTGAAGTTGAACCATC+AGG 0.532569 4_4:-54508891 None:intergenic
AACAGGCAAGAAGAGACAGC+CGG 0.534721 4_4:+54508857 Msa0688480:five_prime_UTR
CATCTACAGCAAAATGGATG+TGG 0.534726 4_4:+54505922 Msa0688480:five_prime_UTR
TCAAGCACAAACCTGGTCAA+TGG 0.535029 4_4:-54506072 None:intergenic
AAACCCTTCTGCCATTGACC+AGG 0.535215 4_4:+54506061 Msa0688480:five_prime_UTR
TCATTCAAGCACATAGAGCC+CGG 0.535674 4_4:+54505846 Msa0688480:five_prime_UTR
CGGTAGCGGCCTTTCGAAAG+TGG 0.535841 4_4:-54510218 None:intergenic
TTTAAAGACAATGGAAAGAG+AGG 0.538091 4_4:+54506326 Msa0688480:five_prime_UTR
AGTCTGAGCATAGCCACGTT+GGG 0.538627 4_4:-54507292 None:intergenic
AACTCGTCGAATTCGGGAGA+TGG 0.539466 4_4:+54509492 Msa0688480:CDS
AGGTACTTCCAATCTGCGGC+TGG 0.542185 4_4:-54508089 None:intergenic
TCTTGGAACTTTGAAGCCAA+AGG 0.542220 4_4:-54505797 None:intergenic
TGTGCATTGGCCACTCCACT+CGG 0.542366 4_4:-54506255 None:intergenic
GGTTGCGGTGGTGTTGGCGA+TGG 0.542582 4_4:+54504317 Msa0688480:five_prime_UTR
TGTTGTGGGGCATGACGACT+TGG 0.542613 4_4:+54511194 Msa0688480:three_prime_UTR
TAGCTATCATTATGTTCTCT+CGG 0.543918 4_4:-54506534 None:intergenic
TCGAATGATCCTTCTTGCTA+CGG 0.544219 4_4:+54508722 Msa0688480:five_prime_UTR
TGTTTGAAATGTGGGATGGA+TGG 0.544805 4_4:+54509625 Msa0688480:CDS
CTGTTCCCAAAACTTGCTGA+AGG 0.546763 4_4:-54508839 None:intergenic
CGAGGACATCACGGATTTAG+CGG 0.548208 4_4:-54504745 None:intergenic
TTGTTGGGTTCTCATCATCT+CGG 0.549046 4_4:+54506595 Msa0688480:five_prime_UTR
TTGTTGGGTTCTCATCATCT+CGG 0.549046 4_4:+54510576 Msa0688480:CDS
CGAGCTTCAGATTGGAAGAG+CGG 0.549147 4_4:-54501339 None:intergenic
GGAAGCTATTCGAGAAGAAG+AGG 0.554823 4_4:+54501944 Msa0688480:intron
GTTAACAACTCTTTGTGCAT+AGG 0.556014 4_4:-54510251 None:intergenic
GAGAAAGATTCATGGGTTTG+TGG 0.557247 4_4:+54508638 Msa0688480:five_prime_UTR
GAGCTCATTAAAGCGACCAC+AGG 0.557353 4_4:+54506676 Msa0688480:five_prime_UTR
TGTTGGAGGATCCTTTGATG+TGG 0.558720 4_4:+54506992 Msa0688480:five_prime_UTR
CAGAGAAGAGAGCTAAAGAT+CGG 0.559209 4_4:-54501390 None:intergenic
CGACTACGTTGCAGAGAAGA+GGG 0.560726 4_4:-54501473 None:intergenic
CAATGCACAAAGAGTTAACT+CGG 0.560953 4_4:+54506269 Msa0688480:five_prime_UTR
AGATTCATGGGTTTGTGGAG+AGG 0.561266 4_4:+54508643 Msa0688480:five_prime_UTR
TATGGCAACCAATACAAAGA+AGG 0.561778 4_4:+54507096 Msa0688480:five_prime_UTR
CCAAGCATTCAATATCCGAT+TGG 0.562018 4_4:+54503747 Msa0688480:five_prime_UTR
TTGGCCACTCCACTCGGTAG+CGG 0.563486 4_4:-54506249 None:intergenic
TAGGCCACTCCACTCGGTAG+CGG 0.563486 4_4:-54510232 None:intergenic
GATACCATTTGAAGAGACTT+GGG 0.564437 4_4:+54508256 Msa0688480:five_prime_UTR
ATACGGGGACTGGCTTCTAC+GGG 0.565321 4_4:+54511168 Msa0688480:CDS
ACTGATACTCAAACCAATGC+CGG 0.566091 4_4:-54508022 None:intergenic
TATGAAGAGTGTTTGAAATG+TGG 0.566182 4_4:+54509616 Msa0688480:CDS
ACGACTACGTTGCAGAGAAG+AGG 0.566453 4_4:-54501474 None:intergenic
TCTAGAAACTATGGTGGTAC+CGG 0.567665 4_4:+54508003 Msa0688480:five_prime_UTR
GTTTGCTGAGCAAATGTGAC+AGG 0.567803 4_4:-54506375 None:intergenic
TACTAATATCCGTAGCAAGA+AGG 0.568540 4_4:-54508731 None:intergenic
ATGACGGATGGTGTTGAAGT+TGG 0.569733 4_4:+54503819 Msa0688480:five_prime_UTR
TGTGCATAGGCCACTCCACT+CGG 0.569929 4_4:-54510238 None:intergenic
ATGGTGGTGGCGAAAGGAGA+AGG 0.570011 4_4:+54504252 Msa0688480:five_prime_UTR
ACGGATGGTGTTGAAGTTGG+CGG 0.570486 4_4:+54503822 Msa0688480:five_prime_UTR
ACAGGCAAGAAGAGACAGCC+GGG 0.572058 4_4:+54508858 Msa0688480:five_prime_UTR
CTTTGATGTGGAGTCCCTTG+TGG 0.572959 4_4:+54507004 Msa0688480:five_prime_UTR
CACAAGGGACTCCACATCAA+AGG 0.573882 4_4:-54507003 None:intergenic
CCGTGATGTCCTCGTCGCAA+TGG 0.574492 4_4:+54504754 Msa0688480:five_prime_UTR
GGTGGCGATGGCGGTTGCGG+TGG 0.575133 4_4:+54504305 Msa0688480:five_prime_UTR
AGGATTAGAGTTCGATGCGA+TGG 0.575134 4_4:+54503789 Msa0688480:five_prime_UTR
TATAAAGACAATGGAAAGAG+AGG 0.575171 4_4:+54510312 Msa0688480:CDS
TAGAGGGTTTAAAGCCGTTG+TGG 0.575392 4_4:+54508200 Msa0688480:five_prime_UTR
ATGCGGAGTTTAGCACATAC+GGG 0.576002 4_4:+54511152 Msa0688480:CDS
AAGGTGGTGGAGGGGAAAGG+AGG 0.576569 4_4:+54504213 Msa0688480:intron
GCAGAAGGGTTTCTGTAGGA+TGG 0.576930 4_4:-54506050 None:intergenic
GACTGCTCAAGCGTGTGGGA+AGG 0.578235 4_4:+54507311 Msa0688480:five_prime_UTR
CTCAGACTGCTCAAGCGTGT+GGG 0.579543 4_4:+54507307 Msa0688480:five_prime_UTR
CTAAGACTGTTCAGATTCAG+AGG 0.581573 4_4:+54501992 Msa0688480:five_prime_UTR
TAGAGTGGTTATAAAGACAA+TGG 0.582498 4_4:+54510303 Msa0688480:CDS
TATTGTTCTTATAGAAGGTG+AGG 0.583167 4_4:+54503509 Msa0688480:five_prime_UTR
CAAACCTGGTCAATGGCAGA+AGG 0.584600 4_4:-54506065 None:intergenic
CGAATGGTGAATGTAGTGAA+AGG 0.586436 4_4:+54509536 Msa0688480:CDS
ATAACTGAAACTAAATCGAT+CGG 0.586558 4_4:-54504795 None:intergenic
ATTCAAATGCAAGAAATGGA+CGG 0.588460 4_4:+54509075 Msa0688480:CDS
TTGGGTCTGCCGGAACGTGT+CGG 0.588603 4_4:-54511244 None:intergenic
CGGTAGCGGCCTTTCGAAAG+CGG 0.589335 4_4:-54506235 None:intergenic
TGGGTCTGTGTCGAAGACAC+TGG 0.590108 4_4:+54507913 Msa0688480:five_prime_UTR
CCACTGAGAACTAGTATGGT+GGG 0.590558 4_4:+54508810 Msa0688480:five_prime_UTR
CAATGGAGAAAGAGTCTGAA+AGG 0.590894 4_4:-54501278 None:intergenic
GCTCAGACTGCTCAAGCGTG+TGG 0.592158 4_4:+54507306 Msa0688480:five_prime_UTR
AGCAAGCATCAAACTTGTGA+GGG 0.592861 4_4:-54509044 None:intergenic
CGGAGATGAAGGTGGTGGAG+GGG 0.593160 4_4:+54504205 Msa0688480:intron
AATCGATCGGAGAGTTCTAC+CGG 0.594959 4_4:-54504782 None:intergenic
ATGCGATGGCGAAAGGATGA+CGG 0.597203 4_4:+54503803 Msa0688480:five_prime_UTR
GAACACAGTTGAAACCAGAT+TGG 0.599444 4_4:-54504945 None:intergenic
ACACTATGGCATGATAGAGT+TGG 0.601658 4_4:+54503379 Msa0688480:five_prime_UTR
GCTGTCTAGAAATTTGGATG+TGG 0.601699 4_4:+54502089 Msa0688480:five_prime_UTR
GTCGAATTCGGGAGATGGAG+AGG 0.601823 4_4:+54509497 Msa0688480:CDS
CTTGAGACTTATCGAAATGG+AGG 0.602255 4_4:+54507700 Msa0688480:five_prime_UTR
GTTTGAGAAGCAGCATAGAG+TGG 0.605018 4_4:+54510288 Msa0688480:CDS
ATCTTGATGGATGTAGGGAA+AGG 0.606230 4_4:+54503100 Msa0688480:five_prime_UTR
CTCTATCATGCCATAGTGTG+TGG 0.606806 4_4:-54503375 None:intergenic
GCCACTGAGAACTAGTATGG+TGG 0.607785 4_4:+54508809 Msa0688480:five_prime_UTR
GTCTTGACTCTTGAGAGCTA+AGG 0.608110 4_4:+54511633 Msa0688480:three_prime_UTR
GATTTAGCGGAGGCTTTGTG+CGG 0.608415 4_4:-54504732 None:intergenic
ATTTGACCAGATTCGACAAG+TGG 0.608851 4_4:+54501968 Msa0688480:five_prime_UTR
TTAAACCCTCTAAAACTGGA+TGG 0.609462 4_4:-54508189 None:intergenic
CCGGGAAAAGAGATGCCTGA+TGG 0.609734 4_4:+54508876 Msa0688480:five_prime_UTR
ACCACCATCTACAACTCCAT+CGG 0.611181 4_4:-54504237 None:intergenic
ATGTCAATGGAAGTGACTGC+AGG 0.612140 4_4:+54508949 Msa0688480:CDS
AAGCAAGCATCAAACTTGTG+AGG 0.613257 4_4:-54509045 None:intergenic
CAGTCTGAGCATAGCCACGT+TGG 0.613747 4_4:-54507293 None:intergenic
AGGGCAATGGATGAAGTTGG+TGG 0.613865 4_4:+54504287 Msa0688480:five_prime_UTR
TTTATAGAGGGAATCACGCG+TGG 0.614222 4_4:-54503581 None:intergenic
TAGAGTTGGTGTGTGAATGT+AGG 0.614643 4_4:+54503393 Msa0688480:five_prime_UTR
GATGGAGTTGTAGATGGTGG+TGG 0.615734 4_4:+54504239 Msa0688480:five_prime_UTR
GTAGCAAGAAGGATCATTCG+AGG 0.616557 4_4:-54508720 None:intergenic
TGATGTCCTCGTCGCAATGG+CGG 0.616829 4_4:+54504757 Msa0688480:five_prime_UTR
CACTGTATCACTAAAACATG+CGG 0.616849 4_4:-54508778 None:intergenic
CTTCTACGGGTAATGTTGTG+GGG 0.617417 4_4:+54511181 Msa0688480:exon
ACATACTGAGAGCTCCTACT+GGG 0.618378 4_4:+54510526 Msa0688480:CDS
TCTATTGATATGATGTCTTG+AGG 0.618511 4_4:+54506414 Msa0688480:five_prime_UTR
CATGGTTTGATCAGTCTGCA+AGG 0.618845 4_4:-54503029 None:intergenic
AGCTCATTAAAGCGACCACA+GGG 0.619676 4_4:+54506677 Msa0688480:five_prime_UTR
TTCGAAAGGCCGCTACCGAG+TGG 0.621158 4_4:+54506240 Msa0688480:five_prime_UTR
GATGGTGTTGAAGTTGGCGG+TGG 0.623232 4_4:+54503825 Msa0688480:five_prime_UTR
TGGTTGCCATACATGATTAG+GGG 0.623830 4_4:-54507084 None:intergenic
AGAGTGTTTGAAATGTGGGA+TGG 0.624246 4_4:+54509621 Msa0688480:CDS
TGCACAAAGAGTTGTTAACT+CGG 0.624623 4_4:+54510255 Msa0688480:CDS
ATGTGGATACTAAAGTGAGA+AGG 0.624715 4_4:+54505939 Msa0688480:five_prime_UTR
GAAGCTATTCGAGAAGAAGA+GGG 0.626506 4_4:+54501945 Msa0688480:intron
AATGGCAGAAGGGTTTCTGT+AGG 0.630365 4_4:-54506054 None:intergenic
TTCGAAAGGCCGCTACCGAG+TGG 0.630559 4_4:+54510223 Msa0688480:CDS
ACTCTTCATCAGCAATTAGG+TGG 0.632287 4_4:-54507827 None:intergenic
AATATCCGATTGGAAAACCC+AGG 0.633825 4_4:+54503757 Msa0688480:five_prime_UTR
ATGGCAATTGAAGCTCGTTG+AGG 0.635193 4_4:+54501365 Msa0688480:five_prime_UTR
GGTTAGGGATGAGTATGCAC+CGG 0.635635 4_4:+54510342 Msa0688480:CDS
GATGAAGTTGGTGGCGATGG+CGG 0.635723 4_4:+54504296 Msa0688480:five_prime_UTR
AAACCTGGTCAATGGCAGAA+GGG 0.635904 4_4:-54506064 None:intergenic
CGGCTAGGACCGCTTTCGAA+AGG 0.636060 4_4:+54506226 Msa0688480:five_prime_UTR
TAATGTAAAAGGTAAGGTGA+CGG 0.636801 4_4:+54504687 Msa0688480:five_prime_UTR
AAGGCCGCTACCGAGTGGAG+TGG 0.637244 4_4:+54510228 Msa0688480:CDS
AAGGCCGCTACCGAGTGGAG+TGG 0.638011 4_4:+54506245 Msa0688480:five_prime_UTR
AATTCGGGAGATGGAGAGGA+CGG 0.638289 4_4:+54509501 Msa0688480:CDS
GCTTGGATATCTATTAGGCA+TGG 0.639413 4_4:-54503730 None:intergenic
GTTTGAGAAGCAGCATAGAG+CGG 0.639672 4_4:+54506302 Msa0688480:five_prime_UTR
GGAACTTTGAAGCCAAAGGG+TGG 0.640019 4_4:-54505793 None:intergenic
GAGTTAACTCGGAAAGAAAG+CGG 0.640585 4_4:+54506280 Msa0688480:five_prime_UTR
TTGTTAACTCGGAAAGAGAG+CGG 0.640754 4_4:+54510266 Msa0688480:CDS
AACAACCTAAAAGGGCTAGT+CGG 0.642277 4_4:-54510558 None:intergenic
GGGTTCTCATCATCTCGGTG+TGG 0.642737 4_4:+54506600 Msa0688480:five_prime_UTR
GGGTTCTCATCATCTCGGTG+TGG 0.642737 4_4:+54510581 Msa0688480:CDS
AAAATGGTGCTTCCAGCACA+GGG 0.643044 4_4:+54508331 Msa0688480:five_prime_UTR
GACCGCCCATTAGTTCAGCT+AGG 0.643366 4_4:-54508050 None:intergenic
CGTAAATATTCCAAAATCCG+CGG 0.647005 4_4:-54508121 None:intergenic
GTAACTTTGAAGCCAAAGGG+TGG 0.650789 4_4:-54510165 None:intergenic
GAAGTTGTGCATACATCTGG+CGG 0.651844 4_4:+54507730 Msa0688480:five_prime_UTR
AGTCAATAACACAATTAACA+TGG 0.652172 4_4:-54503047 None:intergenic
CCATTGCGACGAGGACATCA+CGG 0.652805 4_4:-54504754 None:intergenic
TGCGGCAACTGGAAACAGAA+CGG 0.653414 4_4:+54508681 Msa0688480:five_prime_UTR
ACGGCGAATGAGGAGACGAA+TGG 0.653590 4_4:+54509520 Msa0688480:CDS
GCGAGATATTAGAAAAGCTG+AGG 0.654014 4_4:+54504360 Msa0688480:five_prime_UTR
ATAATGCAGTTCAATAAGCG+AGG 0.657195 4_4:+54507619 Msa0688480:intron
ACATCATATCAATAGACTCA+AGG 0.658508 4_4:-54506407 None:intergenic
GTCGGAACAAACTTCCCAGT+AGG 0.660421 4_4:-54510540 None:intergenic
AGGACGGGATCTTCAGTGTG+CGG 0.664290 4_4:+54508663 Msa0688480:five_prime_UTR
CGGCTAGGACCACTTTCGAA+AGG 0.665380 4_4:+54510209 Msa0688480:CDS
CCGGAACCGCCATTGCGACG+AGG 0.668033 4_4:-54504763 None:intergenic
GTTGGCGATGGAGATGTACA+TGG 0.668187 4_4:+54504329 Msa0688480:five_prime_UTR
GATGTGAAGTGTGCAGACAG+CGG 0.669637 4_4:+54508994 Msa0688480:CDS
ACAGAACCCAATGAGTAAGA+GGG 0.670609 4_4:-54505021 None:intergenic
TCAGTTTGAAGCCTTCTGTG+CGG 0.678971 4_4:+54508906 Msa0688480:five_prime_UTR
GGACATCACGGATTTAGCGG+AGG 0.683899 4_4:-54504742 None:intergenic
TCGACTTCTAGAAACTATGG+TGG 0.684605 4_4:+54507997 Msa0688480:five_prime_UTR
CAAAGTTCCAAGAACAAACG+GGG 0.685277 4_4:+54505807 Msa0688480:five_prime_UTR
TTATAGAGGGAATCACGCGT+GGG 0.688730 4_4:-54503580 None:intergenic
TACGAAGAATCCAATAACTG+AGG 0.689869 4_4:+54508140 Msa0688480:five_prime_UTR
ACCGATGGAGTTGTAGATGG+TGG 0.690749 4_4:+54504236 Msa0688480:five_prime_UTR
GGATGGCTAGAGCATGAACA+TGG 0.693348 4_4:-54506033 None:intergenic
TGTCAGGGAAACATTGCTGA+AGG 0.696155 4_4:+54511098 Msa0688480:intron
TGCCTAGCTGAACTAATGGG+CGG 0.697388 4_4:+54508048 Msa0688480:five_prime_UTR
AGGTTTCCCATCAACCACAA+CGG 0.697501 4_4:-54508214 None:intergenic
GAAAAGGTACTTCCAATCTG+CGG 0.703004 4_4:-54508093 None:intergenic
ACAAATGCAATCATTCAACA+AGG 0.705448 4_4:-54503152 None:intergenic
AAACCATATAGACTGATACA+CGG 0.717551 4_4:-54502150 None:intergenic
TGCGGAGTTTAGCACATACG+GGG 0.722432 4_4:+54511153 Msa0688480:CDS
GAATTGAACTCAACCCAACG+TGG 0.724034 4_4:+54507279 Msa0688480:five_prime_UTR
CCCACCATACTAGTTCTCAG+TGG 0.729319 4_4:-54508810 None:intergenic
GATGGCGAAAGGATGACGGA+TGG 0.756508 4_4:+54503807 Msa0688480:five_prime_UTR
GGCGATGGAGATGTACATGG+TGG 0.786952 4_4:+54504332 Msa0688480:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTTTTTTTTTTTTTTT+TGG + chr4_4:54509120-54509139 Msa0688480:intron 0.0%
!!! TGATTAATTAACTTTTTAAT+TGG + chr4_4:54506960-54506979 Msa0688480:intron 10.0%
!! ATTAAATGAGTTAAAATATT+TGG + chr4_4:54508578-54508597 Msa0688480:intron 10.0%
!! TGATTTATAAAAAACAATAT+GGG - chr4_4:54509443-54509462 None:intergenic 10.0%
!! ATGATTTATAAAAAACAATA+TGG - chr4_4:54509444-54509463 None:intergenic 10.0%
!! GTCAAAATAAATAAATTTAT+CGG + chr4_4:54511280-54511299 Msa0688480:three_prime_UTR 10.0%
!! TCAAAATAAATAAATTTATC+GGG + chr4_4:54511281-54511300 Msa0688480:three_prime_UTR 10.0%
!!! ACACAAAGTTTTTTATATAT+AGG - chr4_4:54505641-54505660 None:intergenic 15.0%
!!! TTAATTAACTTTTTAATTGG+AGG + chr4_4:54506963-54506982 Msa0688480:intron 15.0%
!!! TTTTTAGTGAATTAAAGTTA+AGG + chr4_4:54508395-54508414 Msa0688480:intron 15.0%
!! ATCACTATCATTTATTAAAA+TGG - chr4_4:54511025-54511044 None:intergenic 15.0%
!! AAAAACTTCAGTTATTTATT+TGG - chr4_4:54511439-54511458 None:intergenic 15.0%
!! AATTGAATATAGAATCCTTA+GGG - chr4_4:54501563-54501582 None:intergenic 20.0%
!! ACTTATTTGAACTTATTTAG+TGG + chr4_4:54501728-54501747 Msa0688480:intron 20.0%
!!! AAGTTTTTACACAATTAACA+TGG - chr4_4:54502350-54502369 None:intergenic 20.0%
!! AAAAATTCAGAGAATTTCAA+TGG - chr4_4:54502849-54502868 None:intergenic 20.0%
!!! AAGTTTTAACACAATTAACA+TGG - chr4_4:54503008-54503027 None:intergenic 20.0%
!!! CAAAAGTACAAACTTAATAA+TGG - chr4_4:54503209-54503228 None:intergenic 20.0%
!!! CATTATTAAGTTTGTACTTT+TGG + chr4_4:54503207-54503226 Msa0688480:five_prime_UTR 20.0%
!! AGCAAACGAAAAAAATTTAA+TGG + chr4_4:54503351-54503370 Msa0688480:five_prime_UTR 20.0%
!! AAGAATATTGTTCTTATAGA+AGG + chr4_4:54503504-54503523 Msa0688480:five_prime_UTR 20.0%
!! GCTACAAATTCAATTAATAA+AGG - chr4_4:54503558-54503577 None:intergenic 20.0%
!! AGAAAATAGAAGTTTATAGA+GGG - chr4_4:54503596-54503615 None:intergenic 20.0%
!! TAGAAAATAGAAGTTTATAG+AGG - chr4_4:54503597-54503616 None:intergenic 20.0%
!! TCATTAAAATGCACAAATAT+TGG + chr4_4:54505190-54505209 Msa0688480:intron 20.0%
!! CAATAAAAAAAGGAAAGAAA+GGG - chr4_4:54505321-54505340 None:intergenic 20.0%
!! ACAATAAAAAAAGGAAAGAA+AGG - chr4_4:54505322-54505341 None:intergenic 20.0%
!! GAAAATTCGACAATAAAAAA+AGG - chr4_4:54505331-54505350 None:intergenic 20.0%
!!! TTTCTGTGTAATTTTTGAAA+TGG + chr4_4:54505347-54505366 Msa0688480:intron 20.0%
!!! CTGTTAATTGAGTATTTTTT+GGG + chr4_4:54505662-54505681 Msa0688480:intron 20.0%
!! TCTGATTAAGATTAATGTTA+TGG + chr4_4:54507398-54507417 Msa0688480:five_prime_UTR 20.0%
!! CTGATTAAGATTAATGTTAT+GGG + chr4_4:54507399-54507418 Msa0688480:five_prime_UTR 20.0%
!! TTAGTAATGCAAATAACTTA+GGG - chr4_4:54507497-54507516 None:intergenic 20.0%
!! ATTAGTAATGCAAATAACTT+AGG - chr4_4:54507498-54507517 None:intergenic 20.0%
!! CAATGTCATTAATTACAAAA+AGG - chr4_4:54508372-54508391 None:intergenic 20.0%
!! TCTCAACAAAAATAATATCA+GGG - chr4_4:54508622-54508641 None:intergenic 20.0%
!! TTCTCAACAAAAATAATATC+AGG - chr4_4:54508623-54508642 None:intergenic 20.0%
!!! AGTTTTTTCTAAATCATCAA+AGG - chr4_4:54509172-54509191 None:intergenic 20.0%
!!! TTTCTGTGTAATTTTTGAAA+TGG + chr4_4:54505347-54505366 Msa0688480:intron 20.0%
!!! ATAAAAGTATCTGAGATTTT+AGG + chr4_4:54509951-54509970 Msa0688480:intron 20.0%
!!! ACTGTTAATTGAGTATTTTT+TGG + chr4_4:54510030-54510049 Msa0688480:intron 20.0%
!!! CTGTTAATTGAGTATTTTTT+GGG + chr4_4:54505662-54505681 Msa0688480:intron 20.0%
!! TGTGTTTAGTATAAAAATCT+TGG + chr4_4:54510766-54510785 Msa0688480:intron 20.0%
!! GTGTTTAGTATAAAAATCTT+GGG + chr4_4:54510767-54510786 Msa0688480:intron 20.0%
!!! AACTGAAGTTTTTTAAGTAA+CGG + chr4_4:54511446-54511465 Msa0688480:three_prime_UTR 20.0%
!! TTTCACATTACTATTACTAT+TGG + chr4_4:54511595-54511614 Msa0688480:three_prime_UTR 20.0%
!! TTCACATTACTATTACTATT+GGG + chr4_4:54511596-54511615 Msa0688480:three_prime_UTR 20.0%
! CAATTGAATATAGAATCCTT+AGG - chr4_4:54501564-54501583 None:intergenic 25.0%
! CATGATACAAAAACAGAATT+TGG - chr4_4:54501619-54501638 None:intergenic 25.0%
! ATCAAATCTAATGTCCTTAT+TGG + chr4_4:54501906-54501925 Msa0688480:intron 25.0%
! TTAACATGGTTTAATCATTG+AGG - chr4_4:54502336-54502355 None:intergenic 25.0%
! TATTTAGCAATTGATCTGTA+TGG - chr4_4:54502392-54502411 None:intergenic 25.0%
! TACAGATCAATTGCTAAATA+TGG + chr4_4:54502392-54502411 Msa0688480:intron 25.0%
!! ATACTTCTAAAGAAAACACT+TGG - chr4_4:54502435-54502454 None:intergenic 25.0%
! AAAAACTACCAAAGGAAATA+AGG - chr4_4:54502498-54502517 None:intergenic 25.0%
!!! TATTTCCTTTGGTAGTTTTT+TGG + chr4_4:54502498-54502517 Msa0688480:intron 25.0%
! TTAAACCAAAAAACTACCAA+AGG - chr4_4:54502506-54502525 None:intergenic 25.0%
! AAATTTGTACTACTTTGCTT+TGG + chr4_4:54502698-54502717 Msa0688480:intron 25.0%
! ATTATCACTAAGTGAATCAT+TGG - chr4_4:54502725-54502744 None:intergenic 25.0%
! TCAATTTCCTGATTTAATTG+AGG - chr4_4:54502820-54502839 None:intergenic 25.0%
! ATAAAAGGAAATTGAGTTTG+TGG - chr4_4:54502891-54502910 None:intergenic 25.0%
! ATGTTGAAATGCTAGATAAA+AGG - chr4_4:54502906-54502925 None:intergenic 25.0%
! TTAACATGGTTTAATCATTG+AGG - chr4_4:54502336-54502355 None:intergenic 25.0%
! AGTCAATAACACAATTAACA+TGG - chr4_4:54503050-54503069 None:intergenic 25.0%
!!! TGTGTTATTGACTATGTTTT+TGG + chr4_4:54503057-54503076 Msa0688480:five_prime_UTR 25.0%
!!! TAGTTGTTTTTGTGAATCAA+AGG + chr4_4:54503443-54503462 Msa0688480:five_prime_UTR 25.0%
! TGAAAATACAATTAGTGTGA+TGG - chr4_4:54504540-54504559 None:intergenic 25.0%
! ATAACTGAAACTAAATCGAT+CGG - chr4_4:54504798-54504817 None:intergenic 25.0%
! GTAACAAAGCACATATAAAA+AGG + chr4_4:54504861-54504880 Msa0688480:five_prime_UTR 25.0%
!!! GTGTTTTTTAAGTCAATGTT+TGG + chr4_4:54505058-54505077 Msa0688480:five_prime_UTR 25.0%
! AGAGAGAGAATTAAAAAGAA+GGG - chr4_4:54505296-54505315 None:intergenic 25.0%
! AAGAGAGAGAATTAAAAAGA+AGG - chr4_4:54505297-54505316 None:intergenic 25.0%
!!! GATACTTTACTTTTATCTGA+TGG - chr4_4:54505573-54505592 None:intergenic 25.0%
!!! AGTAAAGTATCTGAGATTTT+AGG + chr4_4:54505582-54505601 Msa0688480:intron 25.0%
!!! GCTGTTAATTGAGTATTTTT+TGG + chr4_4:54505661-54505680 Msa0688480:intron 25.0%
! TATGTTTCATGAGTAATTAG+AGG + chr4_4:54506752-54506771 Msa0688480:intron 25.0%
! GTGTTTGGTATAAAAATCTT+AGG + chr4_4:54506784-54506803 Msa0688480:intron 25.0%
! CAAATTGTAACAAATCTAGT+TGG + chr4_4:54507431-54507450 Msa0688480:five_prime_UTR 25.0%
! TACTAATATGCATGTTATGT+TGG + chr4_4:54507511-54507530 Msa0688480:intron 25.0%
! TTGTTCATAAAAATCATTCG+AGG - chr4_4:54507883-54507902 None:intergenic 25.0%
! AGGCATAAAAATTCTATCTT+GGG - chr4_4:54507959-54507978 None:intergenic 25.0%
! AAGGCATAAAAATTCTATCT+TGG - chr4_4:54507960-54507979 None:intergenic 25.0%
!! AATTTTTATGCCTTTTGTGA+AGG + chr4_4:54507966-54507985 Msa0688480:five_prime_UTR 25.0%
! TGAGTTAAAATATTTGGTTG+TGG + chr4_4:54508584-54508603 Msa0688480:intron 25.0%
!! TTTTTGTTGAGAAAGATTCA+TGG + chr4_4:54508630-54508649 Msa0688480:five_prime_UTR 25.0%
!! TTTTGTTGAGAAAGATTCAT+GGG + chr4_4:54508631-54508650 Msa0688480:five_prime_UTR 25.0%
! TATCATTGAATTTATCAGCA+AGG - chr4_4:54509228-54509247 None:intergenic 25.0%
! ACAAACATAACATGTATAGA+GGG - chr4_4:54509394-54509413 None:intergenic 25.0%
! AACAAACATAACATGTATAG+AGG - chr4_4:54509395-54509414 None:intergenic 25.0%
!! CATGTACTTACATTATTTTC+AGG + chr4_4:54509461-54509480 Msa0688480:intron 25.0%
! TAAATTCCGTTTACCTATAT+TGG + chr4_4:54509564-54509583 Msa0688480:CDS 25.0%
!!! TTGTTTTGTATGAGCATATA+TGG + chr4_4:54509704-54509723 Msa0688480:intron 25.0%
!! TGTATTAGTTAGTATTGAAC+TGG + chr4_4:54509736-54509755 Msa0688480:intron 25.0%
! AATAAAGAGAAAAGTGACAA+AGG - chr4_4:54509789-54509808 None:intergenic 25.0%
!!! GCACGAACTTTTTTATATAT+AGG - chr4_4:54510010-54510029 None:intergenic 25.0%
!! AGAAACTTTTGCAGAATATA+CGG + chr4_4:54510189-54510208 Msa0688480:CDS 25.0%
! TGTTTCATATGAGTAATTAG+AGG + chr4_4:54510735-54510754 Msa0688480:intron 25.0%
!!! TGATGTTTCTTTTTTATGTC+TGG + chr4_4:54510919-54510938 Msa0688480:intron 25.0%
!! CTGAATGTTGACATTTTTAT+TGG + chr4_4:54511075-54511094 Msa0688480:intron 25.0%
!! TTTTCTCAGACAATTATCAA+AGG - chr4_4:54511506-54511525 None:intergenic 25.0%
TGAAATTTGCGAAGTGAAAA+CGG - chr4_4:54501424-54501443 None:intergenic 30.0%
TTTCACTTCGCAAATTTCAT+TGG + chr4_4:54501425-54501444 Msa0688480:five_prime_UTR 30.0%
!! TATCTGATATTTGCTATCTC+AGG + chr4_4:54501682-54501701 Msa0688480:intron 30.0%
TAAACTGAAACAATCCAAAC+AGG - chr4_4:54501709-54501728 None:intergenic 30.0%
!! TAGTGGAATAAGTTTTGTAG+TGG + chr4_4:54501745-54501764 Msa0688480:intron 30.0%
! TGACTTATTTGACTTATCTC+AGG + chr4_4:54501774-54501793 Msa0688480:intron 30.0%
! GACTTATTTGACTTATCTCA+GGG + chr4_4:54501775-54501794 Msa0688480:intron 30.0%
AACACCAATCAAAACAAAAC+AGG - chr4_4:54501801-54501820 None:intergenic 30.0%
TTTGTGCTCACTACTAAAAT+GGG - chr4_4:54501850-54501869 None:intergenic 30.0%
! TTTTGTGCTCACTACTAAAA+TGG - chr4_4:54501851-54501870 None:intergenic 30.0%
!! AATGTCCTTATTGGTTGTTT+TGG + chr4_4:54501915-54501934 Msa0688480:intron 30.0%
TTCATCCAAAACAACCAATA+AGG - chr4_4:54501923-54501942 None:intergenic 30.0%
!!! TATTGGTTGTTTTGGATGAA+TGG + chr4_4:54501923-54501942 Msa0688480:intron 30.0%
AAACCATATAGACTGATACA+CGG - chr4_4:54502153-54502172 None:intergenic 30.0%
! TATCAGTCTATATGGTTTGT+AGG + chr4_4:54502155-54502174 Msa0688480:five_prime_UTR 30.0%
TTTCAACATTTAGCATGTAC+TGG + chr4_4:54502259-54502278 Msa0688480:five_prime_UTR 30.0%
! ATACCATACCTTATTTCCTT+TGG + chr4_4:54502487-54502506 Msa0688480:intron 30.0%
TGCAACTTTATCAGCTTAAA+AGG - chr4_4:54502582-54502601 None:intergenic 30.0%
! TTTTAAGCTGATAAAGTTGC+AGG + chr4_4:54502581-54502600 Msa0688480:intron 30.0%
TGATTTAATTGAGGCAATGT+TGG - chr4_4:54502811-54502830 None:intergenic 30.0%
AACATTGCCTCAATTAAATC+AGG + chr4_4:54502810-54502829 Msa0688480:intron 30.0%
TTTCAACATTTAGCATGTAC+TGG + chr4_4:54502259-54502278 Msa0688480:five_prime_UTR 30.0%
ACAAATGCAATCATTCAACA+AGG - chr4_4:54503155-54503174 None:intergenic 30.0%
! TTCTAAGTGTGACACATTTT+TGG - chr4_4:54503307-54503326 None:intergenic 30.0%
TATTGTTCTTATAGAAGGTG+AGG + chr4_4:54503509-54503528 Msa0688480:five_prime_UTR 30.0%
!! AACTTGTTGATGCTTCAATA+TGG - chr4_4:54503678-54503697 None:intergenic 30.0%
TGAATGCTTGGATATCTATT+AGG - chr4_4:54503738-54503757 None:intergenic 30.0%
GAGAAAGTCCAAAAGAATTA+GGG + chr4_4:54504094-54504113 Msa0688480:intron 30.0%
GAGAAGGTCAAAAAGAATTA+GGG + chr4_4:54504268-54504287 Msa0688480:five_prime_UTR 30.0%
! TCTATTTTGCATTTGACACA+CGG + chr4_4:54504431-54504450 Msa0688480:intron 30.0%
TCGTTTGTCAGAAAAAAATG+TGG + chr4_4:54504562-54504581 Msa0688480:intron 30.0%
CAGAAGTAATGTAAAAGGTA+AGG + chr4_4:54504681-54504700 Msa0688480:five_prime_UTR 30.0%
TAATGTAAAAGGTAAGGTGA+CGG + chr4_4:54504687-54504706 Msa0688480:five_prime_UTR 30.0%
GAAACAATGTTTACCTGTAT+AGG - chr4_4:54504993-54505012 None:intergenic 30.0%
! TTTTGTCTTTAAGCAAAGAC+TGG + chr4_4:54505124-54505143 Msa0688480:intron 30.0%
TATGAAGAGTTCAGAGAAAT+AGG + chr4_4:54505696-54505715 Msa0688480:intron 30.0%
TTCAAAGTTCCAAGAACAAA+CGG + chr4_4:54505805-54505824 Msa0688480:five_prime_UTR 30.0%
TTATTGCATCTACAGCAAAA+TGG + chr4_4:54505916-54505935 Msa0688480:five_prime_UTR 30.0%
!!! ATGTTTTGATCATTCTGTGT+TGG + chr4_4:54506095-54506114 Msa0688480:intron 30.0%
CATACATAAAGTTTCCTGAA+GGG - chr4_4:54506181-54506200 None:intergenic 30.0%
TTTAAAGACAATGGAAAGAG+AGG + chr4_4:54506326-54506345 Msa0688480:five_prime_UTR 30.0%
ACATCATATCAATAGACTCA+AGG - chr4_4:54506410-54506429 None:intergenic 30.0%
TCTATTGATATGATGTCTTG+AGG + chr4_4:54506414-54506433 Msa0688480:five_prime_UTR 30.0%
CTATTGATATGATGTCTTGA+GGG + chr4_4:54506415-54506434 Msa0688480:five_prime_UTR 30.0%
ATTAAAAACAAGCAGTGGAA+TGG - chr4_4:54506461-54506480 None:intergenic 30.0%
!! ATTTCTCATTTTTGCAATGC+AGG + chr4_4:54506507-54506526 Msa0688480:intron 30.0%
TAGCTATCATTATGTTCTCT+CGG - chr4_4:54506537-54506556 None:intergenic 30.0%
TAATGAGCTCTTATGTTGTT+GGG - chr4_4:54506666-54506685 None:intergenic 30.0%
TTAATGAGCTCTTATGTTGT+TGG - chr4_4:54506667-54506686 None:intergenic 30.0%
TGTGTCAATAACACTAATAG+TGG - chr4_4:54506853-54506872 None:intergenic 30.0%
!! AGTAAACTGTTTCTGTTACA+AGG + chr4_4:54506892-54506911 Msa0688480:intron 30.0%
TTAATTGGAGGTAGTTATGT+TGG + chr4_4:54506975-54506994 Msa0688480:intron 30.0%
! ACCAAGTAAATTTTCCACAA+GGG - chr4_4:54507021-54507040 None:intergenic 30.0%
AAACATCACCTTCTTTGTAT+TGG - chr4_4:54507107-54507126 None:intergenic 30.0%
CCAAAAACAAGTTACATTCA+TGG - chr4_4:54507137-54507156 None:intergenic 30.0%
!!! CCATGAATGTAACTTGTTTT+TGG + chr4_4:54507134-54507153 Msa0688480:intron 30.0%
TGTAATCTCAAAACGCTAAA+TGG + chr4_4:54507754-54507773 Msa0688480:five_prime_UTR 30.0%
AAAACTCTTCATCAGCAATT+AGG - chr4_4:54507833-54507852 None:intergenic 30.0%
TTAAAATATTTGGTTGTGGC+AGG + chr4_4:54508588-54508607 Msa0688480:intron 30.0%
CAACAAAAATAATATCAGGG+TGG - chr4_4:54508619-54508638 None:intergenic 30.0%
!! ATTTTAGTGGTTGATGTCAA+TGG + chr4_4:54508936-54508955 Msa0688480:exon 30.0%
GGATATTCAAATGCAAGAAA+TGG + chr4_4:54509071-54509090 Msa0688480:CDS 30.0%
ATTCAAATGCAAGAAATGGA+CGG + chr4_4:54509075-54509094 Msa0688480:CDS 30.0%
!! TATGAAGAGTGTTTGAAATG+TGG + chr4_4:54509616-54509635 Msa0688480:CDS 30.0%
!! ATGAAGAGTGTTTGAAATGT+GGG + chr4_4:54509617-54509636 Msa0688480:CDS 30.0%
! TTATGTCTCAAAACCTTTTG+AGG + chr4_4:54509648-54509667 Msa0688480:CDS 30.0%
! ATTAGTTAGTATTGAACTGG+TGG + chr4_4:54509739-54509758 Msa0688480:intron 30.0%
!!! TAGTCTAAGATGTTTTGGTT+TGG + chr4_4:54509850-54509869 Msa0688480:intron 30.0%
TGTTGTAATGTTACTGTACT+TGG + chr4_4:54509892-54509911 Msa0688480:intron 30.0%
TGAACTCTTCTTCATATCTA+TGG - chr4_4:54510061-54510080 None:intergenic 30.0%
GAAAGAGATTTAGTGTTAGT+TGG + chr4_4:54510097-54510116 Msa0688480:intron 30.0%
TAGAGTGGTTATAAAGACAA+TGG + chr4_4:54510303-54510322 Msa0688480:CDS 30.0%
TATAAAGACAATGGAAAGAG+AGG + chr4_4:54510312-54510331 Msa0688480:CDS 30.0%
AATAAAAACAAGCAGAGGAA+TGG - chr4_4:54510446-54510465 None:intergenic 30.0%
!! ATTTCTCATTTTTGCAATGC+AGG + chr4_4:54506507-54506526 Msa0688480:intron 30.0%
AGCTGAAACATAGTGAAATA+AGG - chr4_4:54510689-54510708 None:intergenic 30.0%
TATGAGTAATTAGAGGATGA+AGG + chr4_4:54510742-54510761 Msa0688480:intron 30.0%
!! TTGACATTTTTATTGGTGTC+AGG + chr4_4:54511082-54511101 Msa0688480:intron 30.0%
!!! TGACATTTTTATTGGTGTCA+GGG + chr4_4:54511083-54511102 Msa0688480:intron 30.0%
!! ACTTTTAACCGACTTTTTGA+TGG + chr4_4:54511124-54511143 Msa0688480:CDS 30.0%
!!! TTATTTTGACTCCAACTTTC+AGG - chr4_4:54511270-54511289 None:intergenic 30.0%
! AATAAATTTATCGGGCCTTT+TGG + chr4_4:54511289-54511308 Msa0688480:three_prime_UTR 30.0%
!!! AGACTCGTTATTTTTCAACT+TGG + chr4_4:54511391-54511410 Msa0688480:three_prime_UTR 30.0%
!!! GACTCGTTATTTTTCAACTT+GGG + chr4_4:54511392-54511411 Msa0688480:three_prime_UTR 30.0%
AGTCTGAAAGGAGATTAAAC+AGG - chr4_4:54501269-54501288 None:intergenic 35.0%
TTGTGTCTGAAAAATCGCAA+TGG - chr4_4:54501298-54501317 None:intergenic 35.0%
TGCTTCGAAAACTCTTGATT+AGG + chr4_4:54501522-54501541 Msa0688480:intron 35.0%
GCTTCGAAAACTCTTGATTA+GGG + chr4_4:54501523-54501542 Msa0688480:intron 35.0%
GTTTATACTCTCAAACCCTA+AGG + chr4_4:54501545-54501564 Msa0688480:intron 35.0%
TATCCGTGTATCAGTCTATA+TGG + chr4_4:54502147-54502166 Msa0688480:five_prime_UTR 35.0%
TATGGTTTAATCAGTCTGCA+GGG - chr4_4:54502374-54502393 None:intergenic 35.0%
CTACCAAAGGAAATAAGGTA+TGG - chr4_4:54502493-54502512 None:intergenic 35.0%
GAAGCATGACATTATTGACA+TGG - chr4_4:54502756-54502775 None:intergenic 35.0%
! GTTTTCATGAGCTATCTTGA+TGG + chr4_4:54503087-54503106 Msa0688480:five_prime_UTR 35.0%
! ATTTAATGGACCACACACTA+TGG + chr4_4:54503365-54503384 Msa0688480:five_prime_UTR 35.0%
CTAATCCTATTTGATCTCCT+GGG - chr4_4:54503777-54503796 None:intergenic 35.0%
TCTAATCCTATTTGATCTCC+TGG - chr4_4:54503778-54503797 None:intergenic 35.0%
GAGAAGGTCCAAAAGAATTA+GGG + chr4_4:54503914-54503933 Msa0688480:intron 35.0%
! AACAATGGCCCTAATTCTTT+TGG - chr4_4:54503925-54503944 None:intergenic 35.0%
GGAGAAAGTCCAAAAGAATT+AGG + chr4_4:54504093-54504112 Msa0688480:intron 35.0%
GGAGAAGGTCAAAAAGAATT+AGG + chr4_4:54504267-54504286 Msa0688480:five_prime_UTR 35.0%
GTCAAAAAGAATTAGGGCAA+TGG + chr4_4:54504274-54504293 Msa0688480:five_prime_UTR 35.0%
AAAAATGTGGAGAAACAAGC+TGG + chr4_4:54504575-54504594 Msa0688480:five_prime_UTR 35.0%
AGCTGGAGATATCAAGAAAT+TGG + chr4_4:54504592-54504611 Msa0688480:five_prime_UTR 35.0%
GAGTGCAGAAGTAATGTAAA+AGG + chr4_4:54504676-54504695 Msa0688480:five_prime_UTR 35.0%
AATCTAGTCCAGAAAGAGAA+AGG + chr4_4:54504899-54504918 Msa0688480:five_prime_UTR 35.0%
CCTGTATAGGAAAGAGATAA+TGG - chr4_4:54504980-54504999 None:intergenic 35.0%
CCATTATCTCTTTCCTATAC+AGG + chr4_4:54504977-54504996 Msa0688480:five_prime_UTR 35.0%
TAACAACCCTCTTACTCATT+GGG + chr4_4:54505015-54505034 Msa0688480:five_prime_UTR 35.0%
! AAATATTGGCTGTTGAGAGA+AGG + chr4_4:54505204-54505223 Msa0688480:intron 35.0%
! AATATTGGCTGTTGAGAGAA+GGG + chr4_4:54505205-54505224 Msa0688480:intron 35.0%
CAAGCTTATGTCTCAAAAGA+TGG - chr4_4:54505264-54505283 None:intergenic 35.0%
CCAAACATGATGAATGATTG+AGG - chr4_4:54505417-54505436 None:intergenic 35.0%
CCTCAATCATTCATCATGTT+TGG + chr4_4:54505414-54505433 Msa0688480:intron 35.0%
! TCTTGTTTCCTAAGACTCTT+AGG + chr4_4:54505457-54505476 Msa0688480:intron 35.0%
CTCTGAACTCTTCATATCTA+TGG - chr4_4:54505692-54505711 None:intergenic 35.0%
GAAAGAGATTTAGTGTTAGC+TGG + chr4_4:54505725-54505744 Msa0688480:intron 35.0%
TCAAAGTTCCAAGAACAAAC+GGG + chr4_4:54505806-54505825 Msa0688480:five_prime_UTR 35.0%
CAACAAAAATTTGAGAAGCC+GGG - chr4_4:54505867-54505886 None:intergenic 35.0%
GCAACAAAAATTTGAGAAGC+CGG - chr4_4:54505868-54505887 None:intergenic 35.0%
! GTTGCTTTGTATTCTTCTGA+TGG + chr4_4:54505883-54505902 Msa0688480:five_prime_UTR 35.0%
ATGTGGATACTAAAGTGAGA+AGG + chr4_4:54505939-54505958 Msa0688480:five_prime_UTR 35.0%
TACTAAAGTGAGAAGGAAAG+AGG + chr4_4:54505946-54505965 Msa0688480:five_prime_UTR 35.0%
AAAACATTCAAGCACAAACC+TGG - chr4_4:54506082-54506101 None:intergenic 35.0%
GCATACATAAAGTTTCCTGA+AGG - chr4_4:54506182-54506201 None:intergenic 35.0%
GGAAACTTTATGTATGCTTC+AGG + chr4_4:54506185-54506204 Msa0688480:intron 35.0%
! GGAAACTTTTGCCGAATATA+CGG + chr4_4:54506206-54506225 Msa0688480:intron 35.0%
CAATGCACAAAGAGTTAACT+CGG + chr4_4:54506269-54506288 Msa0688480:five_prime_UTR 35.0%
!!! TAGAGCGGTTTTAAAGACAA+TGG + chr4_4:54506317-54506336 Msa0688480:five_prime_UTR 35.0%
CCACAATTAAAAACAAGCAG+TGG - chr4_4:54506466-54506485 None:intergenic 35.0%
!!! CCACTGCTTGTTTTTAATTG+TGG + chr4_4:54506463-54506482 Msa0688480:intron 35.0%
!!! CTGCTTGTTTTTAATTGTGG+AGG + chr4_4:54506466-54506485 Msa0688480:intron 35.0%
GGGAGCTTAAATTTGTAAAC+AGG - chr4_4:54506637-54506656 None:intergenic 35.0%
TGAAATAAGGATATACCCTG+TGG - chr4_4:54506695-54506714 None:intergenic 35.0%
CATGAGTAATTAGAGGATGA+AGG + chr4_4:54506759-54506778 Msa0688480:intron 35.0%
! AACACTAATAGTGGCATTGA+CGG - chr4_4:54506844-54506863 None:intergenic 35.0%
TCTGTTACAAGGCTTGTATT+TGG + chr4_4:54506903-54506922 Msa0688480:intron 35.0%
TCCCTTGTGGAAAATTTACT+TGG + chr4_4:54507017-54507036 Msa0688480:five_prime_UTR 35.0%
! GACCAAGTAAATTTTCCACA+AGG - chr4_4:54507022-54507041 None:intergenic 35.0%
AATTTACTTGGTCAACTTGC+TGG + chr4_4:54507029-54507048 Msa0688480:five_prime_UTR 35.0%
TTGGTTGCCATACATGATTA+GGG - chr4_4:54507088-54507107 None:intergenic 35.0%
ATTGGTTGCCATACATGATT+AGG - chr4_4:54507089-54507108 None:intergenic 35.0%
TATGGCAACCAATACAAAGA+AGG + chr4_4:54507096-54507115 Msa0688480:five_prime_UTR 35.0%
GGAAACATCAAATGACATGT+AGG + chr4_4:54507168-54507187 Msa0688480:intron 35.0%
ACATCAAATGACATGTAGGT+AGG + chr4_4:54507172-54507191 Msa0688480:intron 35.0%
! GCTACTGTCATTACATTTTC+TGG + chr4_4:54507203-54507222 Msa0688480:intron 35.0%
!!! CATTTTCTGGAACTGACTTT+CGG + chr4_4:54507216-54507235 Msa0688480:intron 35.0%
! ACACTGCCAGTTATGAATTT+TGG - chr4_4:54507373-54507392 None:intergenic 35.0%
! AACAGCAAAAGTGTACTTGA+AGG - chr4_4:54507556-54507575 None:intergenic 35.0%
ATAATGCAGTTCAATAAGCG+AGG + chr4_4:54507619-54507638 Msa0688480:intron 35.0%
AAGCTTGAGACTTATCGAAA+TGG + chr4_4:54507697-54507716 Msa0688480:five_prime_UTR 35.0%
AGATGTATGCACAACTTCTT+CGG - chr4_4:54507728-54507747 None:intergenic 35.0%
CGATGCTTCAACTAAAAAAG+TGG + chr4_4:54507857-54507876 Msa0688480:five_prime_UTR 35.0%
TTATGAACAAGTCACCTAGA+TGG + chr4_4:54507893-54507912 Msa0688480:five_prime_UTR 35.0%
TATGAACAAGTCACCTAGAT+GGG + chr4_4:54507894-54507913 Msa0688480:five_prime_UTR 35.0%
! AAGTACCTTTTCATTTACCG+CGG + chr4_4:54508104-54508123 Msa0688480:five_prime_UTR 35.0%
AAAATCCGCGGTAAATGAAA+AGG - chr4_4:54508112-54508131 None:intergenic 35.0%
! TTTTCATTTACCGCGGATTT+TGG + chr4_4:54508111-54508130 Msa0688480:five_prime_UTR 35.0%
CGTAAATATTCCAAAATCCG+CGG - chr4_4:54508124-54508143 None:intergenic 35.0%
TACGAAGAATCCAATAACTG+AGG + chr4_4:54508140-54508159 Msa0688480:five_prime_UTR 35.0%
!!! ATCTACCATCCAGTTTTAGA+GGG + chr4_4:54508184-54508203 Msa0688480:five_prime_UTR 35.0%
!! TTAAACCCTCTAAAACTGGA+TGG - chr4_4:54508192-54508211 None:intergenic 35.0%
AGATACCATTTGAAGAGACT+TGG + chr4_4:54508255-54508274 Msa0688480:five_prime_UTR 35.0%
GATACCATTTGAAGAGACTT+GGG + chr4_4:54508256-54508275 Msa0688480:five_prime_UTR 35.0%
!! CAAAGAAACAGCCTTATTGA+TGG - chr4_4:54508304-54508323 None:intergenic 35.0%
!! AATAAGGCTGTTTCTTTGTG+TGG + chr4_4:54508306-54508325 Msa0688480:five_prime_UTR 35.0%
!! ATAAGGCTGTTTCTTTGTGT+GGG + chr4_4:54508307-54508326 Msa0688480:five_prime_UTR 35.0%
GTTTCTTTGTGTGGGAAAAA+TGG + chr4_4:54508315-54508334 Msa0688480:five_prime_UTR 35.0%
ATTAAAAACTTACCCTGTGC+TGG - chr4_4:54508346-54508365 None:intergenic 35.0%
! CATCTAAAGTCACACATGAT+CGG + chr4_4:54508440-54508459 Msa0688480:intron 35.0%
TTTACACTGTCAACAAGTCA+CGG - chr4_4:54508466-54508485 None:intergenic 35.0%
! TTGCATTTGTTCTTGTTGTG+TGG + chr4_4:54508539-54508558 Msa0688480:intron 35.0%
TACTAATATCCGTAGCAAGA+AGG - chr4_4:54508734-54508753 None:intergenic 35.0%
CACTGTATCACTAAAACATG+CGG - chr4_4:54508781-54508800 None:intergenic 35.0%
! AAATTTTCATTCCGCACAGA+AGG - chr4_4:54508920-54508939 None:intergenic 35.0%
! GTGCGGAATGAAAATTTTAG+TGG + chr4_4:54508923-54508942 Msa0688480:five_prime_UTR 35.0%
TTCAAATGCAAGAAATGGAC+GGG + chr4_4:54509076-54509095 Msa0688480:CDS 35.0%
TTACGTGCATTCAATTTACG+TGG - chr4_4:54509252-54509271 None:intergenic 35.0%
TCATGGCCAATATAGGTAAA+CGG - chr4_4:54509573-54509592 None:intergenic 35.0%
AACACTCTTCATATGTAGCA+TGG - chr4_4:54509609-54509628 None:intergenic 35.0%
TGAACAATTCCTTCCTCAAA+AGG - chr4_4:54509664-54509683 None:intergenic 35.0%
!! TTTTGAGGAAGGAATTGTTC+AGG + chr4_4:54509663-54509682 Msa0688480:CDS 35.0%
!! GGTCTTAGTCTAAGATGTTT+TGG + chr4_4:54509845-54509864 Msa0688480:intron 35.0%
! TCTCAGATACTTTTATCTGC+TGG - chr4_4:54509947-54509966 None:intergenic 35.0%
GAAGAAGAGTTCAGAGAAAT+AGG + chr4_4:54510068-54510087 Msa0688480:intron 35.0%
!! AGTGTTAGTTGGTGTTGTAA+TGG + chr4_4:54510108-54510127 Msa0688480:intron 35.0%
!! GTGTTAGTTGGTGTTGTAAT+GGG + chr4_4:54510109-54510128 Msa0688480:intron 35.0%
!! CTTGTAACTTTGAAGCCAAA+GGG - chr4_4:54510171-54510190 None:intergenic 35.0%
!! TCTTGTAACTTTGAAGCCAA+AGG - chr4_4:54510172-54510191 None:intergenic 35.0%
GTTAACAACTCTTTGTGCAT+AGG - chr4_4:54510254-54510273 None:intergenic 35.0%
TGCACAAAGAGTTGTTAACT+CGG + chr4_4:54510255-54510274 Msa0688480:CDS 35.0%
ACATCGTATCAATAGACTCA+AGG - chr4_4:54510394-54510413 None:intergenic 35.0%
CCACAAATAAAAACAAGCAG+AGG - chr4_4:54510451-54510470 None:intergenic 35.0%
!!! CCTCTGCTTGTTTTTATTTG+TGG + chr4_4:54510448-54510467 Msa0688480:intron 35.0%
!!! CTGCTTGTTTTTATTTGTGG+AGG + chr4_4:54510451-54510470 Msa0688480:intron 35.0%
GGGAGCTTAAATTTGTAAAC+AGG - chr4_4:54506637-54506656 None:intergenic 35.0%
TAATGAGCTCTTCTGTTGTT+GGG - chr4_4:54510647-54510666 None:intergenic 35.0%
TTAATGAGCTCTTCTGTTGT+TGG - chr4_4:54510648-54510667 None:intergenic 35.0%
! AACACTAATAGTGGCATTGA+CGG - chr4_4:54506844-54506863 None:intergenic 35.0%
! TGTGTCGATAACACTAATAG+TGG - chr4_4:54510844-54510863 None:intergenic 35.0%
GTTGAAGAAAACGTTGTACT+TGG + chr4_4:54510878-54510897 Msa0688480:intron 35.0%
TACAGTCCTTGATTTCTTGA+AGG + chr4_4:54511048-54511067 Msa0688480:intron 35.0%
ACAGTCCTTGATTTCTTGAA+GGG + chr4_4:54511049-54511068 Msa0688480:intron 35.0%
AGTTACCCTTCAAGAAATCA+AGG - chr4_4:54511057-54511076 None:intergenic 35.0%
TCTGAAAATATCACGCCAAA+AGG - chr4_4:54511307-54511326 None:intergenic 35.0%
TAAGCGCGAGACTAATATTT+GGG + chr4_4:54511331-54511350 Msa0688480:three_prime_UTR 35.0%
ATTGTGAATAAACACGCTCT+TGG + chr4_4:54511525-54511544 Msa0688480:three_prime_UTR 35.0%
CAATGGAGAAAGAGTCTGAA+AGG - chr4_4:54501281-54501300 None:intergenic 40.0%
! TCCAATCTGAAGCTCGAAAA+TGG + chr4_4:54501346-54501365 Msa0688480:five_prime_UTR 40.0%
CAGAGAAGAGAGCTAAAGAT+CGG - chr4_4:54501393-54501412 None:intergenic 40.0%
GGGAAAAAAGGAGCTTCAAT+CGG - chr4_4:54501456-54501475 None:intergenic 40.0%
TTGCAGAGAAGAGGGAAAAA+AGG - chr4_4:54501468-54501487 None:intergenic 40.0%
!! TAGTCGTTTTCTCTCTCACA+AGG + chr4_4:54501490-54501509 Msa0688480:five_prime_UTR 40.0%
!!! AGGGCCTGTTTTGTTTTGAT+TGG + chr4_4:54501794-54501813 Msa0688480:intron 40.0%
GAAGCTATTCGAGAAGAAGA+GGG + chr4_4:54501945-54501964 Msa0688480:intron 40.0%
ATTTGACCAGATTCGACAAG+TGG + chr4_4:54501968-54501987 Msa0688480:five_prime_UTR 40.0%
CTCTGAATCTGAACAGTCTT+AGG - chr4_4:54501994-54502013 None:intergenic 40.0%
CTAAGACTGTTCAGATTCAG+AGG + chr4_4:54501992-54502011 Msa0688480:five_prime_UTR 40.0%
TTCAGATTCAGAGGAAGAAG+AGG + chr4_4:54502001-54502020 Msa0688480:five_prime_UTR 40.0%
!!! AGAAGAGGATTTTGAAGCAG+AGG + chr4_4:54502016-54502035 Msa0688480:five_prime_UTR 40.0%
!!! GATTTTGAAGCAGAGGTTGA+AGG + chr4_4:54502023-54502042 Msa0688480:five_prime_UTR 40.0%
! CCAAATTTCTAGACAGCTCA+AGG - chr4_4:54502086-54502105 None:intergenic 40.0%
CCTTGAGCTGTCTAGAAATT+TGG + chr4_4:54502083-54502102 Msa0688480:five_prime_UTR 40.0%
GCTGTCTAGAAATTTGGATG+TGG + chr4_4:54502089-54502108 Msa0688480:five_prime_UTR 40.0%
GTATGGTTTAATCAGTCTGC+AGG - chr4_4:54502375-54502394 None:intergenic 40.0%
! ACATTTAGCATGTACTGGTG+CGG + chr4_4:54502264-54502283 Msa0688480:five_prime_UTR 40.0%
! TGAGCTATCTTGATGGATGT+AGG + chr4_4:54503094-54503113 Msa0688480:five_prime_UTR 40.0%
! GAGCTATCTTGATGGATGTA+GGG + chr4_4:54503095-54503114 Msa0688480:five_prime_UTR 40.0%
! ATCTTGATGGATGTAGGGAA+AGG + chr4_4:54503100-54503119 Msa0688480:five_prime_UTR 40.0%
ACACTATGGCATGATAGAGT+TGG + chr4_4:54503379-54503398 Msa0688480:five_prime_UTR 40.0%
!! TAGAGTTGGTGTGTGAATGT+AGG + chr4_4:54503393-54503412 Msa0688480:five_prime_UTR 40.0%
! AACACTACCTTTTCAGCTGA+AGG + chr4_4:54503642-54503661 Msa0688480:five_prime_UTR 40.0%
ACTTGAACCTTCAGCTGAAA+AGG - chr4_4:54503652-54503671 None:intergenic 40.0%
ATGGTCTCAGCGAAAAAGAA+AGG - chr4_4:54503714-54503733 None:intergenic 40.0%
GCTTGGATATCTATTAGGCA+TGG - chr4_4:54503733-54503752 None:intergenic 40.0%
CCAATCGGATATTGAATGCT+TGG - chr4_4:54503750-54503769 None:intergenic 40.0%
CCAAGCATTCAATATCCGAT+TGG + chr4_4:54503747-54503766 Msa0688480:five_prime_UTR 40.0%
AATATCCGATTGGAAAACCC+AGG + chr4_4:54503757-54503776 Msa0688480:five_prime_UTR 40.0%
GAAAACCCAGGAGATCAAAT+AGG + chr4_4:54503769-54503788 Msa0688480:five_prime_UTR 40.0%
ACCACCACCTACTTCAATAT+CGG - chr4_4:54503886-54503905 None:intergenic 40.0%
! ATATTGAAGTAGGTGGTGGT+GGG + chr4_4:54503886-54503905 Msa0688480:intron 40.0%
GGAGAAGGTCCAAAAGAATT+AGG + chr4_4:54503913-54503932 Msa0688480:intron 40.0%
ATTAGGGCCATTGTTGAAGT+TGG + chr4_4:54503930-54503949 Msa0688480:intron 40.0%
!! TAGATGGTGGTGGAGAAATA+AGG + chr4_4:54503973-54503992 Msa0688480:intron 40.0%
! AACCATGGCCCTAATTCTTT+TGG - chr4_4:54504105-54504124 None:intergenic 40.0%
ATTAGGGCAATGGATGAAGT+TGG + chr4_4:54504284-54504303 Msa0688480:five_prime_UTR 40.0%
GCGAGATATTAGAAAAGCTG+AGG + chr4_4:54504360-54504379 Msa0688480:five_prime_UTR 40.0%
TGAAATGGAGCTATGAAGCA+CGG - chr4_4:54504514-54504533 None:intergenic 40.0%
TGCTTCATAGCTCCATTTCA+AGG + chr4_4:54504514-54504533 Msa0688480:intron 40.0%
! TTAGTGTGATGGCCTTGAAA+TGG - chr4_4:54504529-54504548 None:intergenic 40.0%
! GCTTTTACCTATATCAGGTG+TGG - chr4_4:54504713-54504732 None:intergenic 40.0%
AGACGAACAAACTACCAATC+TGG + chr4_4:54504931-54504950 Msa0688480:five_prime_UTR 40.0%
GAACACAGTTGAAACCAGAT+TGG - chr4_4:54504948-54504967 None:intergenic 40.0%
CTAACAACCCTCTTACTCAT+TGG + chr4_4:54505014-54505033 Msa0688480:five_prime_UTR 40.0%
ACAGAACCCAATGAGTAAGA+GGG - chr4_4:54505024-54505043 None:intergenic 40.0%
! ACTCTTAGGCTAAGAGGTTT+TGG + chr4_4:54505471-54505490 Msa0688480:intron 40.0%
!!! TAGGCTAAGAGGTTTTGGTT+TGG + chr4_4:54505476-54505495 Msa0688480:intron 40.0%
!! AGTGTTAGCTGGTGTTGTAA+TGG + chr4_4:54505736-54505755 Msa0688480:intron 40.0%
!! GTGTTAGCTGGTGTTGTAAT+GGG + chr4_4:54505737-54505756 Msa0688480:intron 40.0%
!! CTTGGAACTTTGAAGCCAAA+GGG - chr4_4:54505799-54505818 None:intergenic 40.0%
!! TCTTGGAACTTTGAAGCCAA+AGG - chr4_4:54505800-54505819 None:intergenic 40.0%
CAAAGTTCCAAGAACAAACG+GGG + chr4_4:54505807-54505826 Msa0688480:five_prime_UTR 40.0%
! TTTTGTTCCCCGTTTGTTCT+TGG - chr4_4:54505817-54505836 None:intergenic 40.0%
CATCTACAGCAAAATGGATG+TGG + chr4_4:54505922-54505941 Msa0688480:five_prime_UTR 40.0%
! AGTGAGAAGGAAAGAGGTTT+TGG + chr4_4:54505952-54505971 Msa0688480:five_prime_UTR 40.0%
! GTGAGAAGGAAAGAGGTTTT+GGG + chr4_4:54505953-54505972 Msa0688480:five_prime_UTR 40.0%
TGGGTAGTCTTTGTGATCAA+AGG + chr4_4:54505972-54505991 Msa0688480:five_prime_UTR 40.0%
GGGTAGTCTTTGTGATCAAA+GGG + chr4_4:54505973-54505992 Msa0688480:five_prime_UTR 40.0%
! TGCTTTGATGATTTCCCTTC+AGG + chr4_4:54506164-54506183 Msa0688480:intron 40.0%
CGAGTTAACTCTTTGTGCAT+TGG - chr4_4:54506271-54506290 None:intergenic 40.0%
GAGTTAACTCGGAAAGAAAG+CGG + chr4_4:54506280-54506299 Msa0688480:five_prime_UTR 40.0%
GAGAACCCAACAACCTAAAA+GGG - chr4_4:54506588-54506607 None:intergenic 40.0%
TGAGAACCCAACAACCTAAA+AGG - chr4_4:54506589-54506608 None:intergenic 40.0%
TTGTTGGGTTCTCATCATCT+CGG + chr4_4:54506595-54506614 Msa0688480:five_prime_UTR 40.0%
AGCTCTTATGTTGTTGGGTT+GGG - chr4_4:54506661-54506680 None:intergenic 40.0%
AGCTGACACGTAGTGAAATA+AGG - chr4_4:54506708-54506727 None:intergenic 40.0%
ATTGGAGGTAGTTATGTTGG+AGG + chr4_4:54506978-54506997 Msa0688480:intron 40.0%
ACTGATCCCCTAATCATGTA+TGG + chr4_4:54507078-54507097 Msa0688480:five_prime_UTR 40.0%
TGGTTGCCATACATGATTAG+GGG - chr4_4:54507087-54507106 None:intergenic 40.0%
!!! TTGTTTTTGGAGATCCACAC+AGG + chr4_4:54507147-54507166 Msa0688480:intron 40.0%
GTCATTTGATGTTTCCTGTG+TGG - chr4_4:54507164-54507183 None:intergenic 40.0%
! GACATGTAGGTAGGTTTTTC+TGG + chr4_4:54507181-54507200 Msa0688480:intron 40.0%
ACCGAGCCAAAATTCATAAC+TGG + chr4_4:54507364-54507383 Msa0688480:five_prime_UTR 40.0%
!!! GCCAGTTATGAATTTTGGCT+CGG - chr4_4:54507368-54507387 None:intergenic 40.0%
GGCAACTCTGTTAAAGTAAG+TGG + chr4_4:54507452-54507471 Msa0688480:intron 40.0%
AATAGAAAGCCCGCAACAAA+TGG + chr4_4:54507673-54507692 Msa0688480:five_prime_UTR 40.0%
! TCAAGCTTTCCATTTGTTGC+GGG - chr4_4:54507685-54507704 None:intergenic 40.0%
! CTCAAGCTTTCCATTTGTTG+CGG - chr4_4:54507686-54507705 None:intergenic 40.0%
CTTGAGACTTATCGAAATGG+AGG + chr4_4:54507700-54507719 Msa0688480:five_prime_UTR 40.0%
GAAGAAGTTGTGCATACATC+TGG + chr4_4:54507727-54507746 Msa0688480:five_prime_UTR 40.0%
ACTCTTCATCAGCAATTAGG+TGG - chr4_4:54507830-54507849 None:intergenic 40.0%
! AGCTCGACTTCTAGAAACTA+TGG + chr4_4:54507994-54508013 Msa0688480:five_prime_UTR 40.0%
! TCGACTTCTAGAAACTATGG+TGG + chr4_4:54507997-54508016 Msa0688480:five_prime_UTR 40.0%
TCTAGAAACTATGGTGGTAC+CGG + chr4_4:54508003-54508022 Msa0688480:five_prime_UTR 40.0%
ACTGATACTCAAACCAATGC+CGG - chr4_4:54508025-54508044 None:intergenic 40.0%
TAAGTGCCTAGCTGAACTAA+TGG + chr4_4:54508044-54508063 Msa0688480:five_prime_UTR 40.0%
AAGTGCCTAGCTGAACTAAT+GGG + chr4_4:54508045-54508064 Msa0688480:five_prime_UTR 40.0%
!! GAAAAGGTACTTCCAATCTG+CGG - chr4_4:54508096-54508115 None:intergenic 40.0%
TCCAATAACTGAGGTGAAGA+AGG + chr4_4:54508149-54508168 Msa0688480:five_prime_UTR 40.0%
ACCTTCTTCACCTCAGTTAT+TGG - chr4_4:54508153-54508172 None:intergenic 40.0%
!! GATCTACCATCCAGTTTTAG+AGG + chr4_4:54508183-54508202 Msa0688480:five_prime_UTR 40.0%
!! GGCTTTAAACCCTCTAAAAC+TGG - chr4_4:54508196-54508215 None:intergenic 40.0%
! TTTAAAGCCGTTGTGGTTGA+TGG + chr4_4:54508207-54508226 Msa0688480:five_prime_UTR 40.0%
TTAAAGCCGTTGTGGTTGAT+GGG + chr4_4:54508208-54508227 Msa0688480:five_prime_UTR 40.0%
GTATCCCAAGTCTCTTCAAA+TGG - chr4_4:54508263-54508282 None:intergenic 40.0%
CGATCATGTGTGACTTTAGA+TGG - chr4_4:54508442-54508461 None:intergenic 40.0%
GAGAAAGATTCATGGGTTTG+TGG + chr4_4:54508638-54508657 Msa0688480:five_prime_UTR 40.0%
TCGAATGATCCTTCTTGCTA+CGG + chr4_4:54508722-54508741 Msa0688480:five_prime_UTR 40.0%
CAAACTGAAGTTGAACCATC+AGG - chr4_4:54508894-54508913 None:intergenic 40.0%
! ATCCGCTCCAAAGTTTTTCA+AGG - chr4_4:54508977-54508996 None:intergenic 40.0%
AGCAAGCATCAAACTTGTGA+GGG - chr4_4:54509047-54509066 None:intergenic 40.0%
AAGCAAGCATCAAACTTGTG+AGG - chr4_4:54509048-54509067 None:intergenic 40.0%
CAAGTTTGATGCTTGCTTCA+AGG + chr4_4:54509050-54509069 Msa0688480:CDS 40.0%
! AATGCACGTAACTTGCATGT+TGG + chr4_4:54509261-54509280 Msa0688480:intron 40.0%
TTGAAGCAACTCGTCGAATT+CGG + chr4_4:54509485-54509504 Msa0688480:CDS 40.0%
CGAATGGTGAATGTAGTGAA+AGG + chr4_4:54509536-54509555 Msa0688480:CDS 40.0%
! ATGGATTACATCTGCTGTCA+TGG - chr4_4:54509590-54509609 None:intergenic 40.0%
! AGAGTGTTTGAAATGTGGGA+TGG + chr4_4:54509621-54509640 Msa0688480:CDS 40.0%
! TGTTTGAAATGTGGGATGGA+TGG + chr4_4:54509625-54509644 Msa0688480:CDS 40.0%
!! GTCTCAAAACCTTTTGAGGA+AGG + chr4_4:54509652-54509671 Msa0688480:CDS 40.0%
! CTTTTGCAGAATATACGGCT+AGG + chr4_4:54510194-54510213 Msa0688480:CDS 40.0%
TTGTTAACTCGGAAAGAGAG+CGG + chr4_4:54510266-54510285 Msa0688480:CDS 40.0%
GTTTCCTGAGCAAATATGAC+CGG - chr4_4:54510364-54510383 None:intergenic 40.0%
GAGTCTATTGATACGATGTC+TGG + chr4_4:54510395-54510414 Msa0688480:intron 40.0%
TATTGATACGATGTCTGGAG+AGG + chr4_4:54510400-54510419 Msa0688480:intron 40.0%
! GAGCTCTCAGTATGTTTTCT+CGG - chr4_4:54510521-54510540 None:intergenic 40.0%
! AACAACCTAAAAGGGCTAGT+CGG - chr4_4:54510561-54510580 None:intergenic 40.0%
!!! ACTAGCCCTTTTAGGTTGTT+GGG + chr4_4:54510561-54510580 Msa0688480:CDS 40.0%
GAGAACCCAACAACCTAAAA+GGG - chr4_4:54506588-54506607 None:intergenic 40.0%
TGAGAACCCAACAACCTAAA+AGG - chr4_4:54506589-54506608 None:intergenic 40.0%
TTGTTGGGTTCTCATCATCT+CGG + chr4_4:54506595-54506614 Msa0688480:five_prime_UTR 40.0%
AGCTCATTAAAGTGACTGCA+GGG + chr4_4:54510658-54510677 Msa0688480:intron 40.0%
AGAAGACAATGCAAACTGCA+GGG - chr4_4:54510989-54511008 None:intergenic 40.0%
CATTCTGGCCATCAAAAAGT+CGG - chr4_4:54511135-54511154 None:intergenic 40.0%
!! ACTTTTTGATGGCCAGAATG+CGG + chr4_4:54511135-54511154 Msa0688480:CDS 40.0%
AATGCGGAGTTTAGCACATA+CGG + chr4_4:54511151-54511170 Msa0688480:CDS 40.0%
!! TTGACTCCAACTTTCAGGTT+GGG - chr4_4:54511265-54511284 None:intergenic 40.0%
! TTTGACTCCAACTTTCAGGT+TGG - chr4_4:54511266-54511285 None:intergenic 40.0%
CTAAGCGCGAGACTAATATT+TGG + chr4_4:54511330-54511349 Msa0688480:three_prime_UTR 40.0%
GAAGAGCGGAAAAATCGCAA+TGG - chr4_4:54501328-54501347 None:intergenic 45.0%
!! GCCATTTTCGAGCTTCAGAT+TGG - chr4_4:54501350-54501369 None:intergenic 45.0%
ATGGCAATTGAAGCTCGTTG+AGG + chr4_4:54501365-54501384 Msa0688480:five_prime_UTR 45.0%
TTGCTATCTCAGGTCCTGTT+TGG + chr4_4:54501692-54501711 Msa0688480:intron 45.0%
GGAAGCTATTCGAGAAGAAG+AGG + chr4_4:54501944-54501963 Msa0688480:intron 45.0%
CATGGTTTGATCAGTCTGCA+AGG - chr4_4:54503032-54503051 None:intergenic 45.0%
CTCTATCATGCCATAGTGTG+TGG - chr4_4:54503378-54503397 None:intergenic 45.0%
TTATAGAGGGAATCACGCGT+GGG - chr4_4:54503583-54503602 None:intergenic 45.0%
TTTATAGAGGGAATCACGCG+TGG - chr4_4:54503584-54503603 None:intergenic 45.0%
! GATCTCCTGGGTTTTCCAAT+CGG - chr4_4:54503765-54503784 None:intergenic 45.0%
AGGATTAGAGTTCGATGCGA+TGG + chr4_4:54503789-54503808 Msa0688480:five_prime_UTR 45.0%
!! ATGACGGATGGTGTTGAAGT+TGG + chr4_4:54503819-54503838 Msa0688480:five_prime_UTR 45.0%
AGGAGGACCGATATTGAAGT+AGG + chr4_4:54503876-54503895 Msa0688480:intron 45.0%
AGGACCGATATTGAAGTAGG+TGG + chr4_4:54503879-54503898 Msa0688480:intron 45.0%
ACCGATATTGAAGTAGGTGG+TGG + chr4_4:54503882-54503901 Msa0688480:intron 45.0%
! GATATTGAAGTAGGTGGTGG+TGG + chr4_4:54503885-54503904 Msa0688480:intron 45.0%
! TATTGAAGTAGGTGGTGGTG+GGG + chr4_4:54503887-54503906 Msa0688480:intron 45.0%
!! TGGTGGTGGAGAAATAAGGA+TGG + chr4_4:54503977-54503996 Msa0688480:intron 45.0%
GGTGGAGAAATAAGGATGGA+TGG + chr4_4:54503981-54504000 Msa0688480:intron 45.0%
! AGGATGGATGGTGTTGAAGT+TGG + chr4_4:54503993-54504012 Msa0688480:intron 45.0%
! ATGGATGGTGTTGAAGTTGG+CGG + chr4_4:54503996-54504015 Msa0688480:intron 45.0%
AGGAGGACAGATGGTGTAAT+AGG + chr4_4:54504056-54504075 Msa0688480:intron 45.0%
AGGACAGATGGTGTAATAGG+TGG + chr4_4:54504059-54504078 Msa0688480:intron 45.0%
ACAGATGGTGTAATAGGTGG+TGG + chr4_4:54504062-54504081 Msa0688480:intron 45.0%
! ATGGTGTAATAGGTGGTGGT+GGG + chr4_4:54504066-54504085 Msa0688480:intron 45.0%
GTCCAAAAGAATTAGGGCCA+TGG + chr4_4:54503920-54503939 Msa0688480:intron 45.0%
ATTAGGGCCATGGTTGAAGT+TGG + chr4_4:54504110-54504129 Msa0688480:intron 45.0%
!! TAGATGGTGGTGGAGAAATG+AGG + chr4_4:54504153-54504172 Msa0688480:intron 45.0%
! AGGATGGATGGTGTTGAAGT+TGG + chr4_4:54503993-54504012 Msa0688480:intron 45.0%
! ATGGATGGTGTTGAAGTTGG+CGG + chr4_4:54503996-54504015 Msa0688480:intron 45.0%
ACCACCATCTACAACTCCAT+CGG - chr4_4:54504240-54504259 None:intergenic 45.0%
TGTGTCTGACACGACACTTA+TGG - chr4_4:54504464-54504483 None:intergenic 45.0%
! GTGCGGCTTTTACCTATATC+AGG - chr4_4:54504718-54504737 None:intergenic 45.0%
AATCGATCGGAGAGTTCTAC+CGG - chr4_4:54504785-54504804 None:intergenic 45.0%
GATCTGCACCTTTCTCTTTC+TGG - chr4_4:54504910-54504929 None:intergenic 45.0%
CACAGAACCCAATGAGTAAG+AGG - chr4_4:54505025-54505044 None:intergenic 45.0%
!!! AAAGACTGGTTTTGCGCCTA+GGG + chr4_4:54505138-54505157 Msa0688480:intron 45.0%
GAGTACTAATCATGCTCCCT+AGG - chr4_4:54505157-54505176 None:intergenic 45.0%
CCTCTTAGCCTAAGAGTCTT+AGG - chr4_4:54505468-54505487 None:intergenic 45.0%
CCTAAGACTCTTAGGCTAAG+AGG + chr4_4:54505465-54505484 Msa0688480:intron 45.0%
TCATTCAAGCACATAGAGCC+CGG + chr4_4:54505846-54505865 Msa0688480:five_prime_UTR 45.0%
AATGGCAGAAGGGTTTCTGT+AGG - chr4_4:54506057-54506076 None:intergenic 45.0%
AAACCTGGTCAATGGCAGAA+GGG - chr4_4:54506067-54506086 None:intergenic 45.0%
TCAAGCACAAACCTGGTCAA+TGG - chr4_4:54506075-54506094 None:intergenic 45.0%
! CTTTTGCCGAATATACGGCT+AGG + chr4_4:54506211-54506230 Msa0688480:five_prime_UTR 45.0%
GTTTGAGAAGCAGCATAGAG+CGG + chr4_4:54506302-54506321 Msa0688480:five_prime_UTR 45.0%
AATGGAAAGAGAGGCTTCAC+AGG + chr4_4:54506335-54506354 Msa0688480:five_prime_UTR 45.0%
AAAGAGAGGCTTCACAGGTT+AGG + chr4_4:54506340-54506359 Msa0688480:five_prime_UTR 45.0%
AAGAGAGGCTTCACAGGTTA+GGG + chr4_4:54506341-54506360 Msa0688480:five_prime_UTR 45.0%
! GTTTGCTGAGCAAATGTGAC+AGG - chr4_4:54506378-54506397 None:intergenic 45.0%
AGCAGTGGAATGGTTCACAA+GGG - chr4_4:54506451-54506470 None:intergenic 45.0%
AAGCAGTGGAATGGTTCACA+AGG - chr4_4:54506452-54506471 None:intergenic 45.0%
!!! CATTTCTGGCTAGCCCTTTT+AGG + chr4_4:54506572-54506591 Msa0688480:five_prime_UTR 45.0%
!!! GCTAGCCCTTTTAGGTTGTT+GGG + chr4_4:54506580-54506599 Msa0688480:five_prime_UTR 45.0%
!! CTTATGTTGTTGGGTTGGGA+GGG - chr4_4:54506657-54506676 None:intergenic 45.0%
!! TCTTATGTTGTTGGGTTGGG+AGG - chr4_4:54506658-54506677 None:intergenic 45.0%
GAGCTCTTATGTTGTTGGGT+TGG - chr4_4:54506662-54506681 None:intergenic 45.0%
AGCTCATTAAAGCGACCACA+GGG + chr4_4:54506677-54506696 Msa0688480:five_prime_UTR 45.0%
TAGAGGATGAAGGTCGTGTT+TGG + chr4_4:54506769-54506788 Msa0688480:intron 45.0%
TGTTGGAGGATCCTTTGATG+TGG + chr4_4:54506992-54507011 Msa0688480:five_prime_UTR 45.0%
GAATTGAACTCAACCCAACG+TGG + chr4_4:54507279-54507298 Msa0688480:five_prime_UTR 45.0%
GAAGTTGTGCATACATCTGG+CGG + chr4_4:54507730-54507749 Msa0688480:five_prime_UTR 45.0%
TGTGTCGAAGACACTGGAAT+TGG + chr4_4:54507919-54507938 Msa0688480:five_prime_UTR 45.0%
GAGCTATCTGCCTTCACAAA+AGG - chr4_4:54507979-54507998 None:intergenic 45.0%
TTTATAAGCCAGCCGCAGAT+TGG + chr4_4:54508081-54508100 Msa0688480:five_prime_UTR 45.0%
! TAGAGGGTTTAAAGCCGTTG+TGG + chr4_4:54508200-54508219 Msa0688480:five_prime_UTR 45.0%
AGGTTTCCCATCAACCACAA+CGG - chr4_4:54508217-54508236 None:intergenic 45.0%
AGTCGCAAACGCCATCAATA+AGG + chr4_4:54508290-54508309 Msa0688480:five_prime_UTR 45.0%
AAAAATGGTGCTTCCAGCAC+AGG + chr4_4:54508330-54508349 Msa0688480:five_prime_UTR 45.0%
AAAATGGTGCTTCCAGCACA+GGG + chr4_4:54508331-54508350 Msa0688480:five_prime_UTR 45.0%
AGATTCATGGGTTTGTGGAG+AGG + chr4_4:54508643-54508662 Msa0688480:five_prime_UTR 45.0%
GTAGCAAGAAGGATCATTCG+AGG - chr4_4:54508723-54508742 None:intergenic 45.0%
GAAGCCACTGAGAACTAGTA+TGG + chr4_4:54508806-54508825 Msa0688480:five_prime_UTR 45.0%
CCACTGAGAACTAGTATGGT+GGG + chr4_4:54508810-54508829 Msa0688480:five_prime_UTR 45.0%
! AGCTTGCCTTCAGCAAGTTT+TGG + chr4_4:54508833-54508852 Msa0688480:five_prime_UTR 45.0%
! GCTTGCCTTCAGCAAGTTTT+GGG + chr4_4:54508834-54508853 Msa0688480:five_prime_UTR 45.0%
!! CTGTTCCCAAAACTTGCTGA+AGG - chr4_4:54508842-54508861 None:intergenic 45.0%
!!! CTTCAGCAAGTTTTGGGAAC+AGG + chr4_4:54508840-54508859 Msa0688480:five_prime_UTR 45.0%
! TCAGTTTGAAGCCTTCTGTG+CGG + chr4_4:54508906-54508925 Msa0688480:five_prime_UTR 45.0%
ATGTCAATGGAAGTGACTGC+AGG + chr4_4:54508949-54508968 Msa0688480:CDS 45.0%
! CGCCTTGAAAAACTTTGGAG+CGG + chr4_4:54508972-54508991 Msa0688480:CDS 45.0%
TGAAGCAACTCGTCGAATTC+GGG + chr4_4:54509486-54509505 Msa0688480:CDS 45.0%
TCTGCTGTCATGGCCAATAT+AGG - chr4_4:54509580-54509599 None:intergenic 45.0%
!! GTAACTTTGAAGCCAAAGGG+TGG - chr4_4:54510168-54510187 None:intergenic 45.0%
GTTTGAGAAGCAGCATAGAG+TGG + chr4_4:54506302-54506321 Msa0688480:five_prime_UTR 45.0%
AATGGAAAGAGAGGCTTCAC+AGG + chr4_4:54506335-54506354 Msa0688480:five_prime_UTR 45.0%
AAAGAGAGGCTTCACAGGTT+AGG + chr4_4:54506340-54506359 Msa0688480:five_prime_UTR 45.0%
AAGAGAGGCTTCACAGGTTA+GGG + chr4_4:54506341-54506360 Msa0688480:five_prime_UTR 45.0%
AACATACTGAGAGCTCCTAC+TGG + chr4_4:54510525-54510544 Msa0688480:CDS 45.0%
ACATACTGAGAGCTCCTACT+GGG + chr4_4:54510526-54510545 Msa0688480:CDS 45.0%
!! TTGTTCCGACTAGCCCTTTT+AGG + chr4_4:54510553-54510572 Msa0688480:CDS 45.0%
!!! GACTAGCCCTTTTAGGTTGT+TGG + chr4_4:54510560-54510579 Msa0688480:CDS 45.0%
AGCTCTTCTGTTGTTGGGTT+GGG - chr4_4:54510642-54510661 None:intergenic 45.0%
GAGCTCATTAAAGTGACTGC+AGG + chr4_4:54510657-54510676 Msa0688480:intron 45.0%
GAAGACAATGCAAACTGCAG+GGG - chr4_4:54510988-54511007 None:intergenic 45.0%
GAGAAGACAATGCAAACTGC+AGG - chr4_4:54510990-54511009 None:intergenic 45.0%
TGTCAGGGAAACATTGCTGA+AGG + chr4_4:54511098-54511117 Msa0688480:intron 45.0%
ATGTGCTAAACTCCGCATTC+TGG - chr4_4:54511150-54511169 None:intergenic 45.0%
ATGCGGAGTTTAGCACATAC+GGG + chr4_4:54511152-54511171 Msa0688480:CDS 45.0%
GCTTCTACGGGTAATGTTGT+GGG + chr4_4:54511180-54511199 Msa0688480:exon 45.0%
CTTCTACGGGTAATGTTGTG+GGG + chr4_4:54511181-54511200 Msa0688480:exon 45.0%
! GCATGACGACTTGGATTTCA+TGG + chr4_4:54511203-54511222 Msa0688480:three_prime_UTR 45.0%
GTGAATAAACACGCTCTTGG+TGG + chr4_4:54511528-54511547 Msa0688480:three_prime_UTR 45.0%
GTCTTGACTCTTGAGAGCTA+AGG + chr4_4:54511633-54511652 Msa0688480:three_prime_UTR 45.0%
CGAGCTTCAGATTGGAAGAG+CGG - chr4_4:54501342-54501361 None:intergenic 50.0%
CGACTACGTTGCAGAGAAGA+GGG - chr4_4:54501476-54501495 None:intergenic 50.0%
ACGACTACGTTGCAGAGAAG+AGG - chr4_4:54501477-54501496 None:intergenic 50.0%
CTTAGGCCACTTGTCGAATC+TGG - chr4_4:54501977-54501996 None:intergenic 50.0%
ATGCGATGGCGAAAGGATGA+CGG + chr4_4:54503803-54503822 Msa0688480:five_prime_UTR 50.0%
! ACGGATGGTGTTGAAGTTGG+CGG + chr4_4:54503822-54503841 Msa0688480:five_prime_UTR 50.0%
AGGGCCATTGTTGAAGTTGG+TGG + chr4_4:54503933-54503952 Msa0688480:intron 50.0%
!! GCCATTGTTGAAGTTGGTGG+CGG + chr4_4:54503936-54503955 Msa0688480:intron 50.0%
ACCGCCACCAACTTCAACAA+TGG - chr4_4:54503940-54503959 None:intergenic 50.0%
!! ATTGTTGAAGTTGGTGGCGG+TGG + chr4_4:54503939-54503958 Msa0688480:intron 50.0%
! AATGAGGCTGTAGATGGTGG+TGG + chr4_4:54503963-54503982 Msa0688480:intron 50.0%
! GATGGTGTAATAGGTGGTGG+TGG + chr4_4:54504065-54504084 Msa0688480:intron 50.0%
! TGGTGTAATAGGTGGTGGTG+GGG + chr4_4:54504067-54504086 Msa0688480:intron 50.0%
!! TAATAGGTGGTGGTGGGGAA+AGG + chr4_4:54504072-54504091 Msa0688480:intron 50.0%
! AATGAGGCTGTAGATGGTGG+TGG + chr4_4:54503963-54503982 Msa0688480:intron 50.0%
!! TGGTGGTGGAGAAATGAGGA+TGG + chr4_4:54504157-54504176 Msa0688480:intron 50.0%
GGTGGAGAAATGAGGATGGA+TGG + chr4_4:54504161-54504180 Msa0688480:intron 50.0%
AGGACCGATGGAGTTGTAGA+TGG + chr4_4:54504233-54504252 Msa0688480:five_prime_UTR 50.0%
ACCGATGGAGTTGTAGATGG+TGG + chr4_4:54504236-54504255 Msa0688480:five_prime_UTR 50.0%
! GATGGAGTTGTAGATGGTGG+TGG + chr4_4:54504239-54504258 Msa0688480:five_prime_UTR 50.0%
!! TTGTAGATGGTGGTGGCGAA+AGG + chr4_4:54504246-54504265 Msa0688480:five_prime_UTR 50.0%
AGGGCAATGGATGAAGTTGG+TGG + chr4_4:54504287-54504306 Msa0688480:five_prime_UTR 50.0%
!! ATGGATGAAGTTGGTGGCGA+TGG + chr4_4:54504293-54504312 Msa0688480:five_prime_UTR 50.0%
GTTGGCGATGGAGATGTACA+TGG + chr4_4:54504329-54504348 Msa0688480:five_prime_UTR 50.0%
GGAGATGTACATGGTGGTTG+TGG + chr4_4:54504338-54504357 Msa0688480:five_prime_UTR 50.0%
! AAGTGTCGTGTCAGACACAC+TGG + chr4_4:54504465-54504484 Msa0688480:intron 50.0%
AGTGTCGTGTCAGACACACT+GGG + chr4_4:54504466-54504485 Msa0688480:intron 50.0%
TATGAAGCACGGACACTCCT+CGG - chr4_4:54504503-54504522 None:intergenic 50.0%
! GATTTAGCGGAGGCTTTGTG+CGG - chr4_4:54504735-54504754 None:intergenic 50.0%
CGAGGACATCACGGATTTAG+CGG - chr4_4:54504748-54504767 None:intergenic 50.0%
!!! CAAAGACTGGTTTTGCGCCT+AGG + chr4_4:54505137-54505156 Msa0688480:intron 50.0%
GCAAAATCAGCACCACCCTT+TGG + chr4_4:54505781-54505800 Msa0688480:five_prime_UTR 50.0%
!! GGAACTTTGAAGCCAAAGGG+TGG - chr4_4:54505796-54505815 None:intergenic 50.0%
GGATGGCTAGAGCATGAACA+TGG - chr4_4:54506036-54506055 None:intergenic 50.0%
GCAGAAGGGTTTCTGTAGGA+TGG - chr4_4:54506053-54506072 None:intergenic 50.0%
AAACCCTTCTGCCATTGACC+AGG + chr4_4:54506061-54506080 Msa0688480:five_prime_UTR 50.0%
CAAACCTGGTCAATGGCAGA+AGG - chr4_4:54506068-54506087 None:intergenic 50.0%
AGCGGTCCTAGCCGTATATT+CGG - chr4_4:54506220-54506239 None:intergenic 50.0%
!!! GGCTAGCCCTTTTAGGTTGT+TGG + chr4_4:54506579-54506598 Msa0688480:five_prime_UTR 50.0%
GAGCTCATTAAAGCGACCAC+AGG + chr4_4:54506676-54506695 Msa0688480:five_prime_UTR 50.0%
CACAAGGGACTCCACATCAA+AGG - chr4_4:54507006-54507025 None:intergenic 50.0%
CTTTGATGTGGAGTCCCTTG+TGG + chr4_4:54507004-54507023 Msa0688480:five_prime_UTR 50.0%
AGTCTGAGCATAGCCACGTT+GGG - chr4_4:54507295-54507314 None:intergenic 50.0%
TCTTCGACACAGACCCATCT+AGG - chr4_4:54507910-54507929 None:intergenic 50.0%
!! AACTATGGTGGTACCGGCAT+TGG + chr4_4:54508009-54508028 Msa0688480:five_prime_UTR 50.0%
TGCCTAGCTGAACTAATGGG+CGG + chr4_4:54508048-54508067 Msa0688480:five_prime_UTR 50.0%
! CTAGTCACAGCAGCTCTAAC+AGG - chr4_4:54508237-54508256 None:intergenic 50.0%
TCATGGGTTTGTGGAGAGGA+CGG + chr4_4:54508647-54508666 Msa0688480:five_prime_UTR 50.0%
TGCGGCAACTGGAAACAGAA+CGG + chr4_4:54508681-54508700 Msa0688480:five_prime_UTR 50.0%
GCCACTGAGAACTAGTATGG+TGG + chr4_4:54508809-54508828 Msa0688480:five_prime_UTR 50.0%
! CCCACCATACTAGTTCTCAG+TGG - chr4_4:54508813-54508832 None:intergenic 50.0%
AACAGGCAAGAAGAGACAGC+CGG + chr4_4:54508857-54508876 Msa0688480:five_prime_UTR 50.0%
! CCATCAGGCATCTCTTTTCC+CGG - chr4_4:54508879-54508898 None:intergenic 50.0%
GCAGGCGCCTTGAAAAACTT+TGG + chr4_4:54508967-54508986 Msa0688480:CDS 50.0%
GATGTGAAGTGTGCAGACAG+CGG + chr4_4:54508994-54509013 Msa0688480:CDS 50.0%
AACTCGTCGAATTCGGGAGA+TGG + chr4_4:54509492-54509511 Msa0688480:CDS 50.0%
AATTCGGGAGATGGAGAGGA+CGG + chr4_4:54509501-54509520 Msa0688480:CDS 50.0%
GCAAAATCAGCACCACCCTT+TGG + chr4_4:54505781-54505800 Msa0688480:five_prime_UTR 50.0%
GGTTAGGGATGAGTATGCAC+CGG + chr4_4:54506356-54506375 Msa0688480:five_prime_UTR 50.0%
! TGCACCGGTCATATTTGCTC+AGG + chr4_4:54510357-54510376 Msa0688480:intron 50.0%
GTCGGAACAAACTTCCCAGT+AGG - chr4_4:54510543-54510562 None:intergenic 50.0%
!! CTTCTGTTGTTGGGTTGGGA+GGG - chr4_4:54510638-54510657 None:intergenic 50.0%
!! TCTTCTGTTGTTGGGTTGGG+AGG - chr4_4:54510639-54510658 None:intergenic 50.0%
GAGCTCTTCTGTTGTTGGGT+TGG - chr4_4:54510643-54510662 None:intergenic 50.0%
TGCGGAGTTTAGCACATACG+GGG + chr4_4:54511153-54511172 Msa0688480:CDS 50.0%
AGTTTAGCACATACGGGGAC+TGG + chr4_4:54511158-54511177 Msa0688480:CDS 50.0%
GGCTTCTACGGGTAATGTTG+TGG + chr4_4:54511179-54511198 Msa0688480:exon 50.0%
ATCTAGACTCCGACACGTTC+CGG + chr4_4:54511235-54511254 Msa0688480:three_prime_UTR 50.0%
!! AACTTTCAGGTTGGGTCTGC+CGG - chr4_4:54511257-54511276 None:intergenic 50.0%
ACTATTGCTGCTGTGCTCGT+TGG + chr4_4:54511355-54511374 Msa0688480:three_prime_UTR 50.0%
GAGTTCGATGCGATGGCGAA+AGG + chr4_4:54503796-54503815 Msa0688480:five_prime_UTR 55.0%
!! GATGGCGAAAGGATGACGGA+TGG + chr4_4:54503807-54503826 Msa0688480:five_prime_UTR 55.0%
! GATGGTGTTGAAGTTGGCGG+TGG + chr4_4:54503825-54503844 Msa0688480:five_prime_UTR 55.0%
!! AAGTAGGTGGTGGTGGGGAA+AGG + chr4_4:54503892-54503911 Msa0688480:intron 55.0%
GGTGGCAATGAGGCTGTAGA+TGG + chr4_4:54503957-54503976 Msa0688480:intron 55.0%
GGCAATGAGGCTGTAGATGG+TGG + chr4_4:54503960-54503979 Msa0688480:intron 55.0%
! GATGGTGTTGAAGTTGGCGG+TGG + chr4_4:54503825-54503844 Msa0688480:five_prime_UTR 55.0%
AGGGCCATGGTTGAAGTTGG+TGG + chr4_4:54504113-54504132 Msa0688480:intron 55.0%
!! GCCATGGTTGAAGTTGGTGG+CGG + chr4_4:54504116-54504135 Msa0688480:intron 55.0%
ACCGCCACCAACTTCAACCA+TGG - chr4_4:54504120-54504139 None:intergenic 55.0%
!! ATGGTTGAAGTTGGTGGCGG+TGG + chr4_4:54504119-54504138 Msa0688480:intron 55.0%
GGTGGCAATGAGGCTGTAGA+TGG + chr4_4:54503957-54503976 Msa0688480:intron 55.0%
GGCAATGAGGCTGTAGATGG+TGG + chr4_4:54503960-54503979 Msa0688480:intron 55.0%
! GATGGTGTTGAAGTTGGCGG+TGG + chr4_4:54503825-54503844 Msa0688480:five_prime_UTR 55.0%
!! ATGAAGGTGGTGGAGGGGAA+AGG + chr4_4:54504210-54504229 Msa0688480:intron 55.0%
!! ATGGTGGTGGCGAAAGGAGA+AGG + chr4_4:54504252-54504271 Msa0688480:five_prime_UTR 55.0%
!! GATGAAGTTGGTGGCGATGG+CGG + chr4_4:54504296-54504315 Msa0688480:five_prime_UTR 55.0%
GGCGATGGAGATGTACATGG+TGG + chr4_4:54504332-54504351 Msa0688480:five_prime_UTR 55.0%
GTGACGGCCACACCTGATAT+AGG + chr4_4:54504703-54504722 Msa0688480:five_prime_UTR 55.0%
GGACATCACGGATTTAGCGG+AGG - chr4_4:54504745-54504764 None:intergenic 55.0%
CCATTGCGACGAGGACATCA+CGG - chr4_4:54504757-54504776 None:intergenic 55.0%
TGATGTCCTCGTCGCAATGG+CGG + chr4_4:54504757-54504776 Msa0688480:five_prime_UTR 55.0%
GGCTGTTGAGAGAAGGGAGA+AGG + chr4_4:54505211-54505230 Msa0688480:intron 55.0%
! TGTGCATTGGCCACTCCACT+CGG - chr4_4:54506258-54506277 None:intergenic 55.0%
GGGTTCTCATCATCTCGGTG+TGG + chr4_4:54506600-54506619 Msa0688480:five_prime_UTR 55.0%
CAGTCTGAGCATAGCCACGT+TGG - chr4_4:54507296-54507315 None:intergenic 55.0%
CTCAGACTGCTCAAGCGTGT+GGG + chr4_4:54507307-54507326 Msa0688480:five_prime_UTR 55.0%
TGGGTCTGTGTCGAAGACAC+TGG + chr4_4:54507913-54507932 Msa0688480:five_prime_UTR 55.0%
GACCGCCCATTAGTTCAGCT+AGG - chr4_4:54508053-54508072 None:intergenic 55.0%
AGGTACTTCCAATCTGCGGC+TGG - chr4_4:54508092-54508111 None:intergenic 55.0%
CATGGGTTTGTGGAGAGGAC+GGG + chr4_4:54508648-54508667 Msa0688480:five_prime_UTR 55.0%
AGGACGGGATCTTCAGTGTG+CGG + chr4_4:54508663-54508682 Msa0688480:five_prime_UTR 55.0%
GATCTTCAGTGTGCGGCAAC+TGG + chr4_4:54508670-54508689 Msa0688480:five_prime_UTR 55.0%
ACAGGCAAGAAGAGACAGCC+GGG + chr4_4:54508858-54508877 Msa0688480:five_prime_UTR 55.0%
CCGGGAAAAGAGATGCCTGA+TGG + chr4_4:54508876-54508895 Msa0688480:five_prime_UTR 55.0%
GTCGAATTCGGGAGATGGAG+AGG + chr4_4:54509497-54509516 Msa0688480:CDS 55.0%
ACGGCGAATGAGGAGACGAA+TGG + chr4_4:54509520-54509539 Msa0688480:CDS 55.0%
CGGCTAGGACCACTTTCGAA+AGG + chr4_4:54510209-54510228 Msa0688480:CDS 55.0%
TGTGCATAGGCCACTCCACT+CGG - chr4_4:54510241-54510260 None:intergenic 55.0%
GGGTTCTCATCATCTCGGTG+TGG + chr4_4:54506600-54506619 Msa0688480:five_prime_UTR 55.0%
!! CATACGGGGACTGGCTTCTA+CGG + chr4_4:54511167-54511186 Msa0688480:CDS 55.0%
!! ATACGGGGACTGGCTTCTAC+GGG + chr4_4:54511168-54511187 Msa0688480:CDS 55.0%
TGTTGTGGGGCATGACGACT+TGG + chr4_4:54511194-54511213 Msa0688480:three_prime_UTR 55.0%
GGCAGACCCAACCTGAAAGT+TGG + chr4_4:54511256-54511275 Msa0688480:three_prime_UTR 55.0%
!!! GCTGTGCTCGTTGGCTCTTT+TGG + chr4_4:54511364-54511383 Msa0688480:three_prime_UTR 55.0%
GTTGAAGTTGGCGGTGGCAC+CGG + chr4_4:54503831-54503850 Msa0688480:five_prime_UTR 60.0%
!! CTGAAGGTGGTGGTGGCGAA+AGG + chr4_4:54503856-54503875 Msa0688480:intron 60.0%
!! AAGGTGGTGGTGGCGAAAGG+AGG + chr4_4:54503859-54503878 Msa0688480:intron 60.0%
!! GTGGTGGTGGGGAAAGGAGA+AGG + chr4_4:54503898-54503917 Msa0688480:intron 60.0%
!! AGTTGGTGGCGGTGGCAATG+AGG + chr4_4:54503947-54503966 Msa0688480:intron 60.0%
! GGTGTTGAAGTTGGCGGTGG+CGG + chr4_4:54503828-54503847 Msa0688480:five_prime_UTR 60.0%
! ACCAGAGCTGAAGGTGGTGG+TGG + chr4_4:54504029-54504048 Msa0688480:intron 60.0%
!! CTGAAGGTGGTGGTGGCGAA+AGG + chr4_4:54503856-54503875 Msa0688480:intron 60.0%
!! AAGGTGGTGGTGGCGAAAGG+AGG + chr4_4:54503859-54503878 Msa0688480:intron 60.0%
GGTGGCGAAAGGAGGACAGA+TGG + chr4_4:54504047-54504066 Msa0688480:intron 60.0%
!! AGTTGGTGGCGGTGGCAATG+AGG + chr4_4:54503947-54503966 Msa0688480:intron 60.0%
GTTGAAGTTGGCGGTGGCAC+CGG + chr4_4:54503831-54503850 Msa0688480:five_prime_UTR 60.0%
! ACCGGAGATGAAGGTGGTGG+AGG + chr4_4:54504203-54504222 Msa0688480:intron 60.0%
CCCTCCACCACCTTCATCTC+CGG - chr4_4:54504207-54504226 None:intergenic 60.0%
!! CCGGAGATGAAGGTGGTGGA+GGG + chr4_4:54504204-54504223 Msa0688480:intron 60.0%
!! CGGAGATGAAGGTGGTGGAG+GGG + chr4_4:54504205-54504224 Msa0688480:intron 60.0%
!! AAGGTGGTGGAGGGGAAAGG+AGG + chr4_4:54504213-54504232 Msa0688480:intron 60.0%
! ACGGACACTCCTCGGATTGG+GGG - chr4_4:54504495-54504514 None:intergenic 60.0%
CACGGACACTCCTCGGATTG+GGG - chr4_4:54504496-54504515 None:intergenic 60.0%
GCACGGACACTCCTCGGATT+GGG - chr4_4:54504497-54504516 None:intergenic 60.0%
AGCACGGACACTCCTCGGAT+TGG - chr4_4:54504498-54504517 None:intergenic 60.0%
CCGTGATGTCCTCGTCGCAA+TGG + chr4_4:54504754-54504773 Msa0688480:five_prime_UTR 60.0%
CGGCTAGGACCGCTTTCGAA+AGG + chr4_4:54506226-54506245 Msa0688480:five_prime_UTR 60.0%
! CGGTAGCGGCCTTTCGAAAG+CGG - chr4_4:54506238-54506257 None:intergenic 60.0%
TTCGAAAGGCCGCTACCGAG+TGG + chr4_4:54506240-54506259 Msa0688480:five_prime_UTR 60.0%
TTGGCCACTCCACTCGGTAG+CGG - chr4_4:54506252-54506271 None:intergenic 60.0%
GCTCAGACTGCTCAAGCGTG+TGG + chr4_4:54507306-54507325 Msa0688480:five_prime_UTR 60.0%
GACTGCTCAAGCGTGTGGGA+AGG + chr4_4:54507311-54507330 Msa0688480:five_prime_UTR 60.0%
GATGGAGAGGACGGCGAATG+AGG + chr4_4:54509510-54509529 Msa0688480:CDS 60.0%
! CGGTAGCGGCCTTTCGAAAG+TGG - chr4_4:54506238-54506257 None:intergenic 60.0%
TTCGAAAGGCCGCTACCGAG+TGG + chr4_4:54506240-54506259 Msa0688480:five_prime_UTR 60.0%
TAGGCCACTCCACTCGGTAG+CGG - chr4_4:54510235-54510254 None:intergenic 60.0%
TTGGGTCTGCCGGAACGTGT+CGG - chr4_4:54511247-54511266 None:intergenic 60.0%
! ACCGGAGCTGAAGGTGGTGG+TGG + chr4_4:54503849-54503868 Msa0688480:intron 65.0%
GCCACCACCACCTTCAGCTC+CGG - chr4_4:54503853-54503872 None:intergenic 65.0%
! GTTGAAGTTGGCGGTGGCGG+TGG + chr4_4:54504005-54504024 Msa0688480:intron 65.0%
GGTGGCACCAGAGCTGAAGG+TGG + chr4_4:54504023-54504042 Msa0688480:intron 65.0%
GGCACCAGAGCTGAAGGTGG+TGG + chr4_4:54504026-54504045 Msa0688480:intron 65.0%
GCCACCACCACCTTCAGCTC+TGG - chr4_4:54503853-54503872 None:intergenic 65.0%
! GGTGGCACCGGAGATGAAGG+TGG + chr4_4:54504197-54504216 Msa0688480:intron 65.0%
! GGCACCGGAGATGAAGGTGG+TGG + chr4_4:54504200-54504219 Msa0688480:intron 65.0%
GGAGGGGAAAGGAGGACCGA+TGG + chr4_4:54504221-54504240 Msa0688480:five_prime_UTR 65.0%
!! GTTGGTGGCGATGGCGGTTG+CGG + chr4_4:54504302-54504321 Msa0688480:five_prime_UTR 65.0%
! GATGGCGGTTGCGGTGGTGT+TGG + chr4_4:54504311-54504330 Msa0688480:five_prime_UTR 65.0%
!! GGTTGCGGTGGTGTTGGCGA+TGG + chr4_4:54504317-54504336 Msa0688480:five_prime_UTR 65.0%
ACTGGGACACCCCCAATCCG+AGG + chr4_4:54504483-54504502 Msa0688480:intron 65.0%
CCTCGTCGCAATGGCGGTTC+CGG + chr4_4:54504763-54504782 Msa0688480:five_prime_UTR 65.0%
AAGGCCGCTACCGAGTGGAG+TGG + chr4_4:54506245-54506264 Msa0688480:five_prime_UTR 65.0%
AAGGCCGCTACCGAGTGGAG+TGG + chr4_4:54506245-54506264 Msa0688480:five_prime_UTR 65.0%
! GGTGGCACCGGAGCTGAAGG+TGG + chr4_4:54503843-54503862 Msa0688480:intron 70.0%
! GGCACCGGAGCTGAAGGTGG+TGG + chr4_4:54503846-54503865 Msa0688480:intron 70.0%
GGCGGTGGCACCAGAGCTGA+AGG + chr4_4:54504020-54504039 Msa0688480:intron 70.0%
! GGCGGTGGCACCGGAGATGA+AGG + chr4_4:54504194-54504213 Msa0688480:intron 70.0%
CCGGAACCGCCATTGCGACG+AGG - chr4_4:54504766-54504785 None:intergenic 70.0%
! GGCGGTGGCACCGGAGCTGA+AGG + chr4_4:54503840-54503859 Msa0688480:five_prime_UTR 75.0%
! GGTGGCGATGGCGGTTGCGG+TGG + chr4_4:54504305-54504324 Msa0688480:five_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 54501265 54511670 54501265 ID=Msa0688480;Name=Msa0688480
chr4_4 mRNA 54501265 54511670 54501265 ID=Msa0688480-mRNA-1;Parent=Msa0688480;Name=Msa0688480-mRNA-1;_AED=0.12;_eAED=0.12;_QI=4340|0.8|0.87|1|0.26|0.25|16|477|271
chr4_4 exon 54501265 54501511 54501265 ID=Msa0688480-mRNA-1:exon:14346;Parent=Msa0688480-mRNA-1
chr4_4 exon 54501949 54502319 54501949 ID=Msa0688480-mRNA-1:exon:14347;Parent=Msa0688480-mRNA-1
chr4_4 exon 54502978 54503861 54502978 ID=Msa0688480-mRNA-1:exon:14348;Parent=Msa0688480-mRNA-1
chr4_4 exon 54504216 54504401 54504216 ID=Msa0688480-mRNA-1:exon:14349;Parent=Msa0688480-mRNA-1
chr4_4 exon 54504573 54505079 54504573 ID=Msa0688480-mRNA-1:exon:14350;Parent=Msa0688480-mRNA-1
chr4_4 exon 54505744 54506082 54505744 ID=Msa0688480-mRNA-1:exon:14351;Parent=Msa0688480-mRNA-1
chr4_4 exon 54506207 54506436 54506207 ID=Msa0688480-mRNA-1:exon:14352;Parent=Msa0688480-mRNA-1
chr4_4 exon 54506529 54506698 54506529 ID=Msa0688480-mRNA-1:exon:14353;Parent=Msa0688480-mRNA-1
chr4_4 exon 54506989 54507117 54506989 ID=Msa0688480-mRNA-1:exon:14354;Parent=Msa0688480-mRNA-1
chr4_4 exon 54507254 54507466 54507254 ID=Msa0688480-mRNA-1:exon:14355;Parent=Msa0688480-mRNA-1
chr4_4 exon 54507628 54508352 54507628 ID=Msa0688480-mRNA-1:exon:14356;Parent=Msa0688480-mRNA-1
chr4_4 exon 54508610 54509097 54508610 ID=Msa0688480-mRNA-1:exon:14357;Parent=Msa0688480-mRNA-1
chr4_4 exon 54509483 54509684 54509483 ID=Msa0688480-mRNA-1:exon:14358;Parent=Msa0688480-mRNA-1
chr4_4 exon 54510145 54510363 54510145 ID=Msa0688480-mRNA-1:exon:14359;Parent=Msa0688480-mRNA-1
chr4_4 exon 54510513 54510668 54510513 ID=Msa0688480-mRNA-1:exon:14360;Parent=Msa0688480-mRNA-1
chr4_4 exon 54511104 54511670 54511104 ID=Msa0688480-mRNA-1:exon:14361;Parent=Msa0688480-mRNA-1
chr4_4 five_prime_UTR 54501265 54501511 54501265 ID=Msa0688480-mRNA-1:five_prime_utr;Parent=Msa0688480-mRNA-1
chr4_4 five_prime_UTR 54501949 54502319 54501949 ID=Msa0688480-mRNA-1:five_prime_utr;Parent=Msa0688480-mRNA-1
chr4_4 five_prime_UTR 54502978 54503861 54502978 ID=Msa0688480-mRNA-1:five_prime_utr;Parent=Msa0688480-mRNA-1
chr4_4 five_prime_UTR 54504216 54504401 54504216 ID=Msa0688480-mRNA-1:five_prime_utr;Parent=Msa0688480-mRNA-1
chr4_4 five_prime_UTR 54504573 54505079 54504573 ID=Msa0688480-mRNA-1:five_prime_utr;Parent=Msa0688480-mRNA-1
chr4_4 five_prime_UTR 54505744 54506082 54505744 ID=Msa0688480-mRNA-1:five_prime_utr;Parent=Msa0688480-mRNA-1
chr4_4 five_prime_UTR 54506207 54506436 54506207 ID=Msa0688480-mRNA-1:five_prime_utr;Parent=Msa0688480-mRNA-1
chr4_4 five_prime_UTR 54506529 54506698 54506529 ID=Msa0688480-mRNA-1:five_prime_utr;Parent=Msa0688480-mRNA-1
chr4_4 five_prime_UTR 54506989 54507117 54506989 ID=Msa0688480-mRNA-1:five_prime_utr;Parent=Msa0688480-mRNA-1
chr4_4 five_prime_UTR 54507254 54507466 54507254 ID=Msa0688480-mRNA-1:five_prime_utr;Parent=Msa0688480-mRNA-1
chr4_4 five_prime_UTR 54507628 54508352 54507628 ID=Msa0688480-mRNA-1:five_prime_utr;Parent=Msa0688480-mRNA-1
chr4_4 five_prime_UTR 54508610 54508948 54508610 ID=Msa0688480-mRNA-1:five_prime_utr;Parent=Msa0688480-mRNA-1
chr4_4 CDS 54508949 54509097 54508949 ID=Msa0688480-mRNA-1:cds;Parent=Msa0688480-mRNA-1
chr4_4 CDS 54509483 54509684 54509483 ID=Msa0688480-mRNA-1:cds;Parent=Msa0688480-mRNA-1
chr4_4 CDS 54510145 54510363 54510145 ID=Msa0688480-mRNA-1:cds;Parent=Msa0688480-mRNA-1
chr4_4 CDS 54510513 54510668 54510513 ID=Msa0688480-mRNA-1:cds;Parent=Msa0688480-mRNA-1
chr4_4 CDS 54511104 54511193 54511104 ID=Msa0688480-mRNA-1:cds;Parent=Msa0688480-mRNA-1
chr4_4 three_prime_UTR 54511194 54511670 54511194 ID=Msa0688480-mRNA-1:three_prime_utr;Parent=Msa0688480-mRNA-1
Gene Sequence

>Msa0688480

ATGTCAATGGAAGTGACTGCAGGCGCCTTGAAAAACTTTGGAGCGGATGTGAAGTGTGCAGACAGCGGCAAAGCTGCTCTTGAAATGCTTCTATTCCCTCACAAGTTTGATGCTTGCTTCAAGGATATTCAAATGCAAGAAATGGACGGGTTTGAAGCAACTCGTCGAATTCGGGAGATGGAGAGGACGGCGAATGAGGAGACGAATGGTGAATGTAGTGAAAGGAAAAGTAAATTCCGTTTACCTATATTGGCCATGACAGCAGATGTAATCCATGCTACATATGAAGAGTGTTTGAAATGTGGGATGGATGGTTATGTCTCAAAACCTTTTGAGGAAGGAATTGTTCAGATGAAGATGCAAAATCAGCACCACCCTTTGGCTTCAAAGTTACAAGAAACTTTTGCAGAATATACGGCTAGGACCACTTTCGAAAGGCCGCTACCGAGTGGAGTGGCCTATGCACAAAGAGTTGTTAACTCGGAAAGAGAGCGGTTTGAGAAGCAGCATAGAGTGGTTATAAAGACAATGGAAAGAGAGGCTTCACAGGTTAGGGATGAGTATGCACCGGATGACCGAGAAAACATACTGAGAGCTCCTACTGGGAAGTTTGTTCCGACTAGCCCTTTTAGGTTGTTGGGTTCTCATCATCTCGGTGTGGTTTTAACATTTCCTGTTTACAAATTTAAGCTCCCTCCCAACCCAACAACAGAAGAGCTCATTAAAGGAAACATTGCTGAAGGTGCACTTTTAACCGACTTTTTGATGGCCAGAATGCGGAGTTTAGCACATACGGGGACTGGCTTCTACGGGTAA
Protein sequence

>Msa0688480

MSMEVTAGALKNFGADVKCADSGKAALEMLLFPHKFDACFKDIQMQEMDGFEATRRIREMERTANEETNGECSERKSKFRLPILAMTADVIHATYEECLKCGMDGYVSKPFEEGIVQMKMQNQHHPLASKLQETFAEYTARTTFERPLPSGVAYAQRVVNSERERFEKQHRVVIKTMEREASQVRDEYAPDDRENILRAPTGKFVPTSPFRLLGSHHLGVVLTFPVYKFKLPPNPTTEELIKGNIAEGALLTDFLMARMRSLAHTGTGFYG*