Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1420580 | G7JN22 | 76.482 | 523 | 53 | 5 | 1 | 457 | 1 | 519 | 0.0 | 751 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1420580 | Msa1425520 | 0.970362 | 1.675031e-131 | -8.615850e-47 |
| Msa0667660 | Msa1420580 | 0.808406 | 3.145566e-50 | -8.615850e-47 |
| Msa0220580 | Msa1420580 | 0.809678 | 1.680049e-50 | -8.615850e-47 |
| Msa1075220 | Msa1420580 | -0.811126 | 8.183797e-51 | -8.615850e-47 |
| Msa0333720 | Msa1420580 | -0.806240 | 9.054965e-50 | -8.615850e-47 |
| Msa1116130 | Msa1420580 | -0.812930 | 3.308146e-51 | -8.615850e-47 |
| Msa1139000 | Msa1420580 | -0.807428 | 5.079911e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1420580 | MtrunA17_Chr4g0006171 | 76.482 | 523 | 53 | 5 | 1 | 457 | 1 | 519 | 0.0 | 751 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1420580 | AT5G01260.2 | 31.773 | 406 | 221 | 12 | 2 | 385 | 6 | 377 | 5.00e-48 | 170 |
| Msa1420580 | AT5G01260.1 | 34.675 | 323 | 173 | 8 | 2 | 310 | 6 | 304 | 2.91e-46 | 163 |
| Msa1420580 | AT5G01260.3 | 34.494 | 316 | 169 | 8 | 2 | 303 | 6 | 297 | 1.54e-45 | 160 |
Find 98 sgRNAs with CRISPR-Local
Find 269 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGATCCTAAACTTGGTTTA+TGG | 0.208760 | tig0024833:+2349 | Msa1420580:CDS |
| GAAAAGAAGGTGATATTATT+TGG | 0.215755 | tig0024833:+2879 | Msa1420580:CDS |
| TTGTATTATTCTTTCAGTTT+TGG | 0.258568 | tig0024833:+5548 | Msa1420580:three_prime_UTR |
| TGTTCATAGTTTCCCATGTT+TGG | 0.263305 | tig0024833:-2925 | None:intergenic |
| TTAGATTCTTCTTCCATTGT+TGG | 0.308755 | tig0024833:-5210 | None:intergenic |
| CGCAAGGCATTACCATGAAT+TGG | 0.309591 | tig0024833:-4566 | None:intergenic |
| CGCAAGGCATTACCATGAAT+TGG | 0.309591 | tig0024833:-5240 | None:intergenic |
| CTATACAAGTTGATACTAAA+AGG | 0.314326 | tig0024833:+2857 | Msa1420580:CDS |
| CTACTAAAAGATTGCGACTT+TGG | 0.316881 | tig0024833:+2303 | Msa1420580:CDS |
| GGAGAACAGTTTCTAATAGT+TGG | 0.352666 | tig0024833:+2324 | Msa1420580:CDS |
| CAACACAATGATGTTTGGTT+TGG | 0.352722 | tig0024833:-1070 | None:intergenic |
| AATAATTGTTCTTGAGGATT+GGG | 0.356549 | tig0024833:+2949 | Msa1420580:CDS |
| GGGTTCCATAAACCAAGTTT+AGG | 0.360824 | tig0024833:-2354 | None:intergenic |
| GCTATGTTTGCCGAAAATAT+AGG | 0.378453 | tig0024833:+3058 | Msa1420580:CDS |
| AGAACCGGAGGTTCTTCATT+TGG | 0.386077 | tig0024833:-3019 | None:intergenic |
| AACATAGCCATTGGCTTCTC+TGG | 0.387237 | tig0024833:-3043 | None:intergenic |
| GATCCTAGCTTATGAACTAT+AGG | 0.387560 | tig0024833:-1172 | None:intergenic |
| GCATGAAGAACAGTTTCATT+TGG | 0.387821 | tig0024833:+4511 | Msa1420580:CDS |
| CATGGTCTGATGGTCATATA+TGG | 0.388044 | tig0024833:+2397 | Msa1420580:CDS |
| TAAATTACATAGATTGTGTA+TGG | 0.388589 | tig0024833:+5591 | Msa1420580:three_prime_UTR |
| AGGTGATATTATTTGGCAAC+CGG | 0.392152 | tig0024833:+2886 | Msa1420580:CDS |
| ACATGAAGAGCAGTTTCATT+TGG | 0.393105 | tig0024833:+5185 | Msa1420580:CDS |
| GGAAAGAGTGAAACAAGAAA+AGG | 0.394035 | tig0024833:-1233 | None:intergenic |
| GAATAATTGTTCTTGAGGAT+TGG | 0.398780 | tig0024833:+2948 | Msa1420580:CDS |
| AGACACAACACAATGATGTT+TGG | 0.412139 | tig0024833:-1075 | None:intergenic |
| TGCAGTGCCATCTGAACAAC+AGG | 0.413359 | tig0024833:+1330 | Msa1420580:CDS |
| GTCAATGGTAATGCATCTAA+AGG | 0.413839 | tig0024833:-2375 | None:intergenic |
| TATTATGCTGTCTTGTTACA+TGG | 0.423619 | tig0024833:+5524 | Msa1420580:three_prime_UTR |
| TCTAACTCAGAGCCAATTCA+TGG | 0.434464 | tig0024833:+5228 | Msa1420580:CDS |
| GGAGGTCCTGTTCTTGTACC+TGG | 0.437575 | tig0024833:+3238 | Msa1420580:CDS |
| GAAAGAGTGAAACAAGAAAA+GGG | 0.442955 | tig0024833:-1232 | None:intergenic |
| AGCTCTTATCCATCTTTCCC+AGG | 0.460639 | tig0024833:-5424 | None:intergenic |
| GTTGGAGATGATCCTAAACT+TGG | 0.469158 | tig0024833:+2342 | Msa1420580:CDS |
| TTCTGATCCTGAGTTTCAAA+AGG | 0.469360 | tig0024833:-3343 | None:intergenic |
| ATTAAGCCAGGTACAAGAAC+AGG | 0.470486 | tig0024833:-3244 | None:intergenic |
| ATTGGCTTCTCTGGTAGAAC+CGG | 0.470881 | tig0024833:-3034 | None:intergenic |
| TCTTCTTCAACAACTTCACT+TGG | 0.473052 | tig0024833:-3292 | None:intergenic |
| TAAGAGCTCAAAGTGTTTCA+TGG | 0.475434 | tig0024833:+5439 | Msa1420580:CDS |
| CTTAGAACTAAAACTTGTGA+AGG | 0.476857 | tig0024833:-1149 | None:intergenic |
| GAACAGAATAATTGTTCTTG+AGG | 0.486338 | tig0024833:+2943 | Msa1420580:CDS |
| TCAAACTCAGAGCCAATTCA+TGG | 0.486763 | tig0024833:+4554 | Msa1420580:CDS |
| CTTGAAACATGTACAAAACA+AGG | 0.506329 | tig0024833:+1291 | Msa1420580:CDS |
| ATCATGTGTTCAGGATATGC+TGG | 0.508543 | tig0024833:+2820 | Msa1420580:intron |
| GTACTTGTACTTATCTCTTG+TGG | 0.509169 | tig0024833:-5138 | None:intergenic |
| TCAATGGTAATGCATCTAAA+GGG | 0.510357 | tig0024833:-2374 | None:intergenic |
| TTACCGTTTCGAAGCCCCAC+TGG | 0.512596 | tig0024833:-4598 | None:intergenic |
| TGCCGAAAATATAGGTTCCT+CGG | 0.514374 | tig0024833:+3066 | Msa1420580:CDS |
| TTGATACTAAAAGGAAAAGA+AGG | 0.516269 | tig0024833:+2866 | Msa1420580:CDS |
| ACTTTATACTAAAAGATAAG+TGG | 0.522726 | tig0024833:-5616 | None:intergenic |
| TTGGCATCAACAATGGAAGA+AGG | 0.534614 | tig0024833:+4530 | Msa1420580:CDS |
| CATCCAGTGGGGCTTCGAAA+CGG | 0.535005 | tig0024833:+4595 | Msa1420580:CDS |
| TCAACCAAATGAAGAACCTC+CGG | 0.536881 | tig0024833:+3015 | Msa1420580:CDS |
| TATTATTTGGCAACCGGGGT+CGG | 0.540226 | tig0024833:+2892 | Msa1420580:CDS |
| TCAGTCAACGGTATTAAGCC+AGG | 0.540479 | tig0024833:-3256 | None:intergenic |
| AAATAAACCTGTTGTTCAGA+TGG | 0.543697 | tig0024833:-1337 | None:intergenic |
| TGTTCGCTTTGTTGAACTTG+AGG | 0.544102 | tig0024833:-2151 | None:intergenic |
| CGGATCGAGTAATCCAAACA+TGG | 0.544820 | tig0024833:+2912 | Msa1420580:CDS |
| CAGATGGCACTGCATGCAAA+GGG | 0.546614 | tig0024833:-1321 | None:intergenic |
| AGAACTTCAGAAAATAATAG+AGG | 0.549395 | tig0024833:+2979 | Msa1420580:CDS |
| AAGCCTATAGTTCATAAGCT+AGG | 0.553146 | tig0024833:+1169 | Msa1420580:CDS |
| CAACAAAATCTAAACGTACA+AGG | 0.553450 | tig0024833:+1045 | Msa1420580:five_prime_UTR |
| GTTTCAAAAGGTTCAACTGA+TGG | 0.554167 | tig0024833:-3331 | None:intergenic |
| AAGAGTGAAGAATCTGAAGA+TGG | 0.555921 | tig0024833:+3142 | Msa1420580:CDS |
| TGGATTACTCGATCCGACCC+CGG | 0.556713 | tig0024833:-2905 | None:intergenic |
| TGACCATCAGACCATGTCAA+TGG | 0.564403 | tig0024833:-2390 | None:intergenic |
| GTTTCATTTGGCATCAACAA+TGG | 0.568666 | tig0024833:+4523 | Msa1420580:CDS |
| TCAGATGGCACTGCATGCAA+AGG | 0.568931 | tig0024833:-1322 | None:intergenic |
| GGCTTCTCTGGTAGAACCGG+AGG | 0.575456 | tig0024833:-3031 | None:intergenic |
| TCATATATGGACTGTTGAGC+TGG | 0.575955 | tig0024833:+2410 | Msa1420580:CDS |
| GTTTCATTTGGCACCAACAA+TGG | 0.578517 | tig0024833:+5197 | Msa1420580:CDS |
| AATGAAGAACTTTCTCCTAG+TGG | 0.580536 | tig0024833:-5345 | None:intergenic |
| CCAGCTTCTTCTTCAGTCAA+CGG | 0.590556 | tig0024833:-3268 | None:intergenic |
| TGTGTTCAGGATATGCTGGC+TGG | 0.594337 | tig0024833:+2824 | Msa1420580:intron |
| AGCATGAATTCAACAAACAA+TGG | 0.595879 | tig0024833:-5472 | None:intergenic |
| CCACTGGATGTCATTTCGCA+AGG | 0.596297 | tig0024833:-4582 | None:intergenic |
| TGGCATCAACAATGGAAGAA+GGG | 0.602203 | tig0024833:+4531 | Msa1420580:CDS |
| TGAAAATGTTCAGTTGAGCA+AGG | 0.604858 | tig0024833:+5092 | Msa1420580:intron |
| TAGATGCATTACCATTGACA+TGG | 0.613812 | tig0024833:+2379 | Msa1420580:CDS |
| CCTTGCGAAATGACATCCAG+TGG | 0.615325 | tig0024833:+4582 | Msa1420580:CDS |
| GGTGATATTATTTGGCAACC+GGG | 0.626598 | tig0024833:+2887 | Msa1420580:CDS |
| TGAAAATGCTCAGTTAAGCA+AGG | 0.630052 | tig0024833:+4424 | Msa1420580:intron |
| ACTTCAGAAAATAATAGAGG+AGG | 0.634094 | tig0024833:+2982 | Msa1420580:CDS |
| TTACCATTGACATGGTCTGA+TGG | 0.637869 | tig0024833:+2387 | Msa1420580:CDS |
| CTTGCGAAATGACATCCAGT+GGG | 0.638788 | tig0024833:+4583 | Msa1420580:CDS |
| GAAACATGAAAAGCAACACT+AGG | 0.641404 | tig0024833:-1202 | None:intergenic |
| TTGAAACATGTACAAAACAA+GGG | 0.648807 | tig0024833:+1292 | Msa1420580:CDS |
| AAGTGTTTCATGGTGATGCA+TGG | 0.648971 | tig0024833:+5449 | Msa1420580:exon |
| GGTTCTACCAGAGAAGCCAA+TGG | 0.652910 | tig0024833:+3036 | Msa1420580:CDS |
| CCGTTGACTGAAGAAGAAGC+TGG | 0.654789 | tig0024833:+3268 | Msa1420580:CDS |
| GTGATATTATTTGGCAACCG+GGG | 0.662994 | tig0024833:+2888 | Msa1420580:CDS |
| TTCAACTGATGGCTCTACCA+CGG | 0.664103 | tig0024833:-3320 | None:intergenic |
| GGATCGAGTAATCCAAACAT+GGG | 0.665164 | tig0024833:+2913 | Msa1420580:CDS |
| ACTTTCTGTGAGATCCTCCG+AGG | 0.674643 | tig0024833:-3083 | None:intergenic |
| CGAAAATATAGGTTCCTCGG+AGG | 0.707768 | tig0024833:+3069 | Msa1420580:CDS |
| TCAGGATCAGAATATACCAG+AGG | 0.719056 | tig0024833:+3354 | Msa1420580:CDS |
| TGTTGAAGAAGAAAAGACCG+TGG | 0.738151 | tig0024833:+3303 | Msa1420580:CDS |
| TTGCGAAATGACATCCAGTG+GGG | 0.750769 | tig0024833:+4584 | Msa1420580:CDS |
| TTAGTAGCTGAAACTCAACA+CGG | 0.751100 | tig0024833:-2287 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTTGAATTTGATAAAT+GGG | + | tig0024833:1392-1411 | Msa1420580:intron | 10.0% |
| !!! | CTTTATTTGAATTTGATAAA+TGG | + | tig0024833:1391-1410 | Msa1420580:intron | 15.0% |
| !!! | GATTTTAATGTTATACTTTT+TGG | + | tig0024833:1567-1586 | Msa1420580:intron | 15.0% |
| !! | AAAACAAAAGTTTCTTAAAA+GGG | - | tig0024833:1663-1682 | None:intergenic | 15.0% |
| !! | AAAAACAAAAGTTTCTTAAA+AGG | - | tig0024833:1664-1683 | None:intergenic | 15.0% |
| !!! | TGTTTTTGATTTTTTGTTTT+TGG | + | tig0024833:1677-1696 | Msa1420580:intron | 15.0% |
| !! | ACATATGAGTAAAAATTAAT+TGG | + | tig0024833:1814-1833 | Msa1420580:intron | 15.0% |
| !! | TGATTGTTATATATACATTA+AGG | + | tig0024833:1882-1901 | Msa1420580:intron | 15.0% |
| !! | GATTGTTATATATACATTAA+GGG | + | tig0024833:1883-1902 | Msa1420580:intron | 15.0% |
| !!! | ACACACAAATTAAAATTTTA+GGG | - | tig0024833:2244-2263 | None:intergenic | 15.0% |
| !!! | AACACACAAATTAAAATTTT+AGG | - | tig0024833:2245-2264 | None:intergenic | 15.0% |
| !! | TTGGAAACAAAATAAAAAAA+AGG | - | tig0024833:2537-2556 | None:intergenic | 15.0% |
| !! | TCTTAATTTCAAAGATTTAA+CGG | - | tig0024833:2683-2702 | None:intergenic | 15.0% |
| !! | ATTAATGATAACAATCAATT+TGG | - | tig0024833:3634-3653 | None:intergenic | 15.0% |
| !! | ATAAAATGAGAAAATTTGTA+TGG | - | tig0024833:4168-4187 | None:intergenic | 15.0% |
| !!! | TTGCACATTTTTTTAATATA+TGG | + | tig0024833:4335-4354 | Msa1420580:intron | 15.0% |
| !!! | TCATTGCTTTAAATAATTAA+TGG | - | tig0024833:4983-5002 | None:intergenic | 15.0% |
| !! | TCAAATAAAGAACACAAATT+GGG | - | tig0024833:1381-1400 | None:intergenic | 20.0% |
| !! | TTCAAATAAAGAACACAAAT+TGG | - | tig0024833:1382-1401 | None:intergenic | 20.0% |
| !! | GTTGTAGTTATTTATTTGTT+TGG | + | tig0024833:1414-1433 | Msa1420580:intron | 20.0% |
| !! | ATAACTTCAAATAGGAAAAA+GGG | - | tig0024833:1715-1734 | None:intergenic | 20.0% |
| !! | AATAACTTCAAATAGGAAAA+AGG | - | tig0024833:1716-1735 | None:intergenic | 20.0% |
| !! | AAAAGAGAATAACTTCAAAT+AGG | - | tig0024833:1723-1742 | None:intergenic | 20.0% |
| !! | CAAATCATTAAGATATTGTT+TGG | + | tig0024833:2448-2467 | Msa1420580:intron | 20.0% |
| !! | CAGCGTTAAAAAATAAAAAA+GGG | + | tig0024833:3182-3201 | Msa1420580:CDS | 20.0% |
| !!! | AAATAAATTGTGTGTTGTTA+TGG | - | tig0024833:3770-3789 | None:intergenic | 20.0% |
| !!! | ATATAATTTTAGTGCTTGTT+TGG | - | tig0024833:4130-4149 | None:intergenic | 20.0% |
| !! | AAGAGTTCTTGTAAATAAAA+CGG | - | tig0024833:4852-4871 | None:intergenic | 20.0% |
| !! | AAGAAGTTTCTAACAAAATT+TGG | + | tig0024833:5294-5313 | Msa1420580:intron | 20.0% |
| !!! | CTTTTTGCCTAAATTTTTAT+TGG | + | tig0024833:5401-5420 | Msa1420580:CDS | 20.0% |
| !!! | TTGTATTATTCTTTCAGTTT+TGG | + | tig0024833:5548-5567 | Msa1420580:three_prime_UTR | 20.0% |
| !! | TAAATTACATAGATTGTGTA+TGG | + | tig0024833:5591-5610 | Msa1420580:three_prime_UTR | 20.0% |
| !! | ACTTTATACTAAAAGATAAG+TGG | - | tig0024833:5619-5638 | None:intergenic | 20.0% |
| !!! | ACTTTTTTGTTCATTTCTGA+AGG | - | tig0024833:1257-1276 | None:intergenic | 25.0% |
| ! | ATGTTTCAAGAGACAAAAAA+TGG | - | tig0024833:1281-1300 | None:intergenic | 25.0% |
| ! | TTGAAACATGTACAAAACAA+GGG | + | tig0024833:1292-1311 | Msa1420580:CDS | 25.0% |
| ! | CAAATAAAGAACACAAATTG+GGG | - | tig0024833:1380-1399 | None:intergenic | 25.0% |
| ! | CATCATAGATTAAAACCAAA+AGG | - | tig0024833:1482-1501 | None:intergenic | 25.0% |
| ! | TAACTTCAAATAGGAAAAAG+GGG | - | tig0024833:1714-1733 | None:intergenic | 25.0% |
| ! | GTATTTATGTAGAATTCAAG+AGG | + | tig0024833:1791-1810 | Msa1420580:intron | 25.0% |
| ! | ATATACATTAAGGGTCTATT+TGG | + | tig0024833:1892-1911 | Msa1420580:intron | 25.0% |
| ! | AAGATGTTTAAGTGAACTAA+TGG | + | tig0024833:1955-1974 | Msa1420580:intron | 25.0% |
| !! | TTGTTCTGCATAAATTTTAC+AGG | + | tig0024833:2105-2124 | Msa1420580:intron | 25.0% |
| ! | AACAAACAAGTATGTTCTAA+TGG | + | tig0024833:2170-2189 | Msa1420580:intron | 25.0% |
| !! | TTTGGTCGAAAACATTTTTA+AGG | + | tig0024833:2466-2485 | Msa1420580:intron | 25.0% |
| ! | TATAAACAACCACTACATAA+CGG | - | tig0024833:2794-2813 | None:intergenic | 25.0% |
| !! | ATATTTTTCATCATGTGTTC+AGG | + | tig0024833:2811-2830 | Msa1420580:intron | 25.0% |
| !! | CTTTTAGTATCAACTTGTAT+AGG | - | tig0024833:2859-2878 | None:intergenic | 25.0% |
| !!! | CTATACAAGTTGATACTAAA+AGG | + | tig0024833:2857-2876 | Msa1420580:CDS | 25.0% |
| ! | TTGATACTAAAAGGAAAAGA+AGG | + | tig0024833:2866-2885 | Msa1420580:CDS | 25.0% |
| ! | GAAAAGAAGGTGATATTATT+TGG | + | tig0024833:2879-2898 | Msa1420580:CDS | 25.0% |
| ! | AATAATTGTTCTTGAGGATT+GGG | + | tig0024833:2949-2968 | Msa1420580:CDS | 25.0% |
| ! | AGAACTTCAGAAAATAATAG+AGG | + | tig0024833:2979-2998 | Msa1420580:CDS | 25.0% |
| !!! | TTTTTATTTTTTAACGCTGC+AGG | - | tig0024833:3181-3200 | None:intergenic | 25.0% |
| ! | GCAGCGTTAAAAAATAAAAA+AGG | + | tig0024833:3181-3200 | Msa1420580:CDS | 25.0% |
| ! | ATGATGATACAAACAAAACA+AGG | - | tig0024833:3496-3515 | None:intergenic | 25.0% |
| ! | GATTATATATGTACGAAACA+AGG | - | tig0024833:3572-3591 | None:intergenic | 25.0% |
| ! | TATATAATCAATGCATCTTG+AGG | + | tig0024833:3583-3602 | Msa1420580:intron | 25.0% |
| !!! | TATTTTAATCTGAAACAAGC+TGG | + | tig0024833:3785-3804 | Msa1420580:intron | 25.0% |
| !!! | GGTTTTAATAAAAAGGTTTG+CGG | - | tig0024833:3945-3964 | None:intergenic | 25.0% |
| !!! | GTTTGTTAAGTTTTTGTAAC+AGG | - | tig0024833:3975-3994 | None:intergenic | 25.0% |
| !!! | ACATTGGTTTAAATGATTAC+TGG | - | tig0024833:4309-4328 | None:intergenic | 25.0% |
| ! | AAAAAAGATGTCCAAAATCT+GGG | - | tig0024833:4737-4756 | None:intergenic | 25.0% |
| ! | AAAAAAAGATGTCCAAAATC+TGG | - | tig0024833:4738-4757 | None:intergenic | 25.0% |
| ! | AGAGTTCTTGTAAATAAAAC+GGG | - | tig0024833:4851-4870 | None:intergenic | 25.0% |
| ! | ATCAGATATATTCTAGTCAA+TGG | - | tig0024833:4877-4896 | None:intergenic | 25.0% |
| CAACAAAATCTAAACGTACA+AGG | + | tig0024833:1045-1064 | Msa1420580:five_prime_UTR | 30.0% | |
| CTTAGAACTAAAACTTGTGA+AGG | - | tig0024833:1152-1171 | None:intergenic | 30.0% | |
| GAAAGAGTGAAACAAGAAAA+GGG | - | tig0024833:1235-1254 | None:intergenic | 30.0% | |
| CTTGAAACATGTACAAAACA+AGG | + | tig0024833:1291-1310 | Msa1420580:CDS | 30.0% | |
| AAATAAACCTGTTGTTCAGA+TGG | - | tig0024833:1340-1359 | None:intergenic | 30.0% | |
| !! | TTTGTTCTTTGTTGTTGAAG+TGG | - | tig0024833:1628-1647 | None:intergenic | 30.0% |
| !!! | ATTGGTTTTTCTGTGTTTAG+TGG | + | tig0024833:1832-1851 | Msa1420580:intron | 30.0% |
| ! | ACGCAAAAATAGCTTGATTT+TGG | + | tig0024833:2063-2082 | Msa1420580:intron | 30.0% |
| ! | TTCTGCATAAATTTTACAGG+AGG | + | tig0024833:2108-2127 | Msa1420580:intron | 30.0% |
| ATGATCCTAAACTTGGTTTA+TGG | + | tig0024833:2349-2368 | Msa1420580:CDS | 30.0% | |
| ! | TCAATGGTAATGCATCTAAA+GGG | - | tig0024833:2377-2396 | None:intergenic | 30.0% |
| GAACAGAATAATTGTTCTTG+AGG | + | tig0024833:2943-2962 | Msa1420580:CDS | 30.0% | |
| GAATAATTGTTCTTGAGGAT+TGG | + | tig0024833:2948-2967 | Msa1420580:CDS | 30.0% | |
| ACTTCAGAAAATAATAGAGG+AGG | + | tig0024833:2982-3001 | Msa1420580:CDS | 30.0% | |
| AAATAAAAAAGGGACGATTG+TGG | + | tig0024833:3192-3211 | Msa1420580:CDS | 30.0% | |
| TCAAACAATTTGAAAAGGAG+CGG | - | tig0024833:3399-3418 | None:intergenic | 30.0% | |
| CGGAATCAAACAATTTGAAA+AGG | - | tig0024833:3404-3423 | None:intergenic | 30.0% | |
| !! | CGAATGAGCTTTTAAAGAAA+CGG | - | tig0024833:3424-3443 | None:intergenic | 30.0% |
| ! | CGTTTCTTTAAAAGCTCATT+CGG | + | tig0024833:3422-3441 | Msa1420580:intron | 30.0% |
| ! | GTTTCTTTAAAAGCTCATTC+GGG | + | tig0024833:3423-3442 | Msa1420580:intron | 30.0% |
| ! | CTAATTAGTTCTTCTCTAAG+TGG | - | tig0024833:3457-3476 | None:intergenic | 30.0% |
| CACTTAGAGAAGAACTAATT+AGG | + | tig0024833:3455-3474 | Msa1420580:intron | 30.0% | |
| !! | TCTGCAGGGTTTTAATAAAA+AGG | - | tig0024833:3952-3971 | None:intergenic | 30.0% |
| !! | ATTTTAGTGCTTGTTTGGAT+TGG | - | tig0024833:4125-4144 | None:intergenic | 30.0% |
| CTTCTGATGAAAAAACAACA+GGG | + | tig0024833:4245-4264 | Msa1420580:intron | 30.0% | |
| AAATGTGCAAGTTTACACAT+TGG | - | tig0024833:4325-4344 | None:intergenic | 30.0% | |
| !!! | GATTGTTTTGATGTCAAATG+TGG | + | tig0024833:4642-4661 | Msa1420580:intron | 30.0% |
| GAGTTCTTGTAAATAAAACG+GGG | - | tig0024833:4850-4869 | None:intergenic | 30.0% | |
| TTAGATTCTTCTTCCATTGT+TGG | - | tig0024833:5213-5232 | None:intergenic | 30.0% | |
| AGCATGAATTCAACAAACAA+TGG | - | tig0024833:5475-5494 | None:intergenic | 30.0% | |
| ! | TATTATGCTGTCTTGTTACA+TGG | + | tig0024833:5524-5543 | Msa1420580:three_prime_UTR | 30.0% |
| CAACACAATGATGTTTGGTT+TGG | - | tig0024833:1073-1092 | None:intergenic | 35.0% | |
| AGACACAACACAATGATGTT+TGG | - | tig0024833:1078-1097 | None:intergenic | 35.0% | |
| AAGCCTATAGTTCATAAGCT+AGG | + | tig0024833:1169-1188 | Msa1420580:CDS | 35.0% | |
| GATCCTAGCTTATGAACTAT+AGG | - | tig0024833:1175-1194 | None:intergenic | 35.0% | |
| GAAACATGAAAAGCAACACT+AGG | - | tig0024833:1205-1224 | None:intergenic | 35.0% | |
| GGAAAGAGTGAAACAAGAAA+AGG | - | tig0024833:1236-1255 | None:intergenic | 35.0% | |
| !! | TTCCATGAGTTTGTTCCTTT+TGG | + | tig0024833:1464-1483 | Msa1420580:intron | 35.0% |
| AACCAAAAGGAACAAACTCA+TGG | - | tig0024833:1469-1488 | None:intergenic | 35.0% | |
| ! | TTTTCCATCCATGTCAATGA+TGG | + | tig0024833:1739-1758 | Msa1420580:intron | 35.0% |
| GTTATACTCCATCATTGACA+TGG | - | tig0024833:1750-1769 | None:intergenic | 35.0% | |
| GAGTGAAAGTTGTTAAGAAG+TGG | + | tig0024833:1854-1873 | Msa1420580:intron | 35.0% | |
| TTTAGGGATTTGAGTCCTAA+AGG | - | tig0024833:2228-2247 | None:intergenic | 35.0% | |
| TTAGTAGCTGAAACTCAACA+CGG | - | tig0024833:2290-2309 | None:intergenic | 35.0% | |
| CTACTAAAAGATTGCGACTT+TGG | + | tig0024833:2303-2322 | Msa1420580:CDS | 35.0% | |
| GGAGAACAGTTTCTAATAGT+TGG | + | tig0024833:2324-2343 | Msa1420580:CDS | 35.0% | |
| ! | GTCAATGGTAATGCATCTAA+AGG | - | tig0024833:2378-2397 | None:intergenic | 35.0% |
| TAGATGCATTACCATTGACA+TGG | + | tig0024833:2379-2398 | Msa1420580:CDS | 35.0% | |
| AAAGGTGAAAACAACGTAAC+TGG | - | tig0024833:2519-2538 | None:intergenic | 35.0% | |
| ! | CTTAAAACTCTGGTTTCCAT+CGG | - | tig0024833:2639-2658 | None:intergenic | 35.0% |
| !!! | CTCTTTTGGTCTTAAAACTC+TGG | - | tig0024833:2649-2668 | None:intergenic | 35.0% |
| AGGTGATATTATTTGGCAAC+CGG | + | tig0024833:2886-2905 | Msa1420580:CDS | 35.0% | |
| TGTTCATAGTTTCCCATGTT+TGG | - | tig0024833:2928-2947 | None:intergenic | 35.0% | |
| GCTATGTTTGCCGAAAATAT+AGG | + | tig0024833:3058-3077 | Msa1420580:CDS | 35.0% | |
| AAGAGTGAAGAATCTGAAGA+TGG | + | tig0024833:3142-3161 | Msa1420580:CDS | 35.0% | |
| !! | GGAAGCTTAATCGATTTTGA+AGG | + | tig0024833:3217-3236 | Msa1420580:CDS | 35.0% |
| !! | AGCTTAATCGATTTTGAAGG+AGG | + | tig0024833:3220-3239 | Msa1420580:CDS | 35.0% |
| TCTTCTTCAACAACTTCACT+TGG | - | tig0024833:3295-3314 | None:intergenic | 35.0% | |
| GTTTCAAAAGGTTCAACTGA+TGG | - | tig0024833:3334-3353 | None:intergenic | 35.0% | |
| !!! | AGTTGAACCTTTTGAAACTC+AGG | + | tig0024833:3336-3355 | Msa1420580:CDS | 35.0% |
| TTCTGATCCTGAGTTTCAAA+AGG | - | tig0024833:3346-3365 | None:intergenic | 35.0% | |
| ! | GAGATGTTACCATGAACTTT+TGG | + | tig0024833:3727-3746 | Msa1420580:intron | 35.0% |
| ATTCAACAGCCAAAAGTTCA+TGG | - | tig0024833:3739-3758 | None:intergenic | 35.0% | |
| AGACACTTAGTAATGCTAGA+TGG | - | tig0024833:4001-4020 | None:intergenic | 35.0% | |
| AGCATTACTAAGTGTCTGTT+TGG | + | tig0024833:4004-4023 | Msa1420580:intron | 35.0% | |
| GCTTCTGATGAAAAAACAAC+AGG | + | tig0024833:4244-4263 | Msa1420580:intron | 35.0% | |
| ! | TTCACTTGTAGGCTTTAGTT+AGG | + | tig0024833:4269-4288 | Msa1420580:intron | 35.0% |
| TGAAAATGCTCAGTTAAGCA+AGG | + | tig0024833:4424-4443 | Msa1420580:intron | 35.0% | |
| GCATGAAGAACAGTTTCATT+TGG | + | tig0024833:4511-4530 | Msa1420580:CDS | 35.0% | |
| GTTTCATTTGGCATCAACAA+TGG | + | tig0024833:4523-4542 | Msa1420580:CDS | 35.0% | |
| !! | AAAGTCGATGCTAGTCTTAA+TGG | + | tig0024833:5037-5056 | Msa1420580:intron | 35.0% |
| TGAAAATGTTCAGTTGAGCA+AGG | + | tig0024833:5092-5111 | Msa1420580:intron | 35.0% | |
| GTACTTGTACTTATCTCTTG+TGG | - | tig0024833:5141-5160 | None:intergenic | 35.0% | |
| ACATGAAGAGCAGTTTCATT+TGG | + | tig0024833:5185-5204 | Msa1420580:CDS | 35.0% | |
| AATGAAGAACTTTCTCCTAG+TGG | - | tig0024833:5348-5367 | None:intergenic | 35.0% | |
| ! | TGCCTAAATTTTTATTGGCC+TGG | + | tig0024833:5406-5425 | Msa1420580:CDS | 35.0% |
| !! | GCCTAAATTTTTATTGGCCT+GGG | + | tig0024833:5407-5426 | Msa1420580:CDS | 35.0% |
| TCCCAGGCCAATAAAAATTT+AGG | - | tig0024833:5411-5430 | None:intergenic | 35.0% | |
| ! | TAAGAGCTCAAAGTGTTTCA+TGG | + | tig0024833:5439-5458 | Msa1420580:CDS | 35.0% |
| TACTCCATCATTGACATGGA+TGG | - | tig0024833:1746-1765 | None:intergenic | 40.0% | |
| ! | TGTTCGCTTTGTTGAACTTG+AGG | - | tig0024833:2154-2173 | None:intergenic | 40.0% |
| TCTTCTGCATGTCTTCCTTT+AGG | + | tig0024833:2210-2229 | Msa1420580:intron | 40.0% | |
| GTTGGAGATGATCCTAAACT+TGG | + | tig0024833:2342-2361 | Msa1420580:CDS | 40.0% | |
| GGGTTCCATAAACCAAGTTT+AGG | - | tig0024833:2357-2376 | None:intergenic | 40.0% | |
| TTACCATTGACATGGTCTGA+TGG | + | tig0024833:2387-2406 | Msa1420580:CDS | 40.0% | |
| CATGGTCTGATGGTCATATA+TGG | + | tig0024833:2397-2416 | Msa1420580:CDS | 40.0% | |
| ! | TCATATATGGACTGTTGAGC+TGG | + | tig0024833:2410-2429 | Msa1420580:CDS | 40.0% |
| TCCAAAATGTTCTCGAAACC+TGG | + | tig0024833:2552-2571 | Msa1420580:intron | 40.0% | |
| ! | CGGTGAAAACAACACTCTTT+TGG | - | tig0024833:2663-2682 | None:intergenic | 40.0% |
| ATCATGTGTTCAGGATATGC+TGG | + | tig0024833:2820-2839 | Msa1420580:intron | 40.0% | |
| GGTGATATTATTTGGCAACC+GGG | + | tig0024833:2887-2906 | Msa1420580:CDS | 40.0% | |
| GTGATATTATTTGGCAACCG+GGG | + | tig0024833:2888-2907 | Msa1420580:CDS | 40.0% | |
| GGATCGAGTAATCCAAACAT+GGG | + | tig0024833:2913-2932 | Msa1420580:CDS | 40.0% | |
| TCAACCAAATGAAGAACCTC+CGG | + | tig0024833:3015-3034 | Msa1420580:CDS | 40.0% | |
| ! | TTTTCGGCAAACATAGCCAT+TGG | - | tig0024833:3055-3074 | None:intergenic | 40.0% |
| TGCCGAAAATATAGGTTCCT+CGG | + | tig0024833:3066-3085 | Msa1420580:CDS | 40.0% | |
| ! | CTCCGAGGAACCTATATTTT+CGG | - | tig0024833:3071-3090 | None:intergenic | 40.0% |
| TAAAAAAGGGACGATTGTGG+AGG | + | tig0024833:3195-3214 | Msa1420580:CDS | 40.0% | |
| AAAAAAGGGACGATTGTGGA+GGG | + | tig0024833:3196-3215 | Msa1420580:CDS | 40.0% | |
| ATTAAGCCAGGTACAAGAAC+AGG | - | tig0024833:3247-3266 | None:intergenic | 40.0% | |
| TGTTGAAGAAGAAAAGACCG+TGG | + | tig0024833:3303-3322 | Msa1420580:CDS | 40.0% | |
| TCAGGATCAGAATATACCAG+AGG | + | tig0024833:3354-3373 | Msa1420580:CDS | 40.0% | |
| CATCTTGAGGCCAAAAGAAA+GGG | + | tig0024833:3596-3615 | Msa1420580:intron | 40.0% | |
| ATCTTGAGGCCAAAAGAAAG+GGG | + | tig0024833:3597-3616 | Msa1420580:intron | 40.0% | |
| ! | GCAATGTTTCCCCTTTCTTT+TGG | - | tig0024833:3609-3628 | None:intergenic | 40.0% |
| AGTCACGATCCTTGATATTG+CGG | + | tig0024833:3830-3849 | Msa1420580:intron | 40.0% | |
| ! | TGCGATTTTCCGCAATATCA+AGG | - | tig0024833:3842-3861 | None:intergenic | 40.0% |
| ! | GTTTTTGTAACAGGTCTGCA+GGG | - | tig0024833:3966-3985 | None:intergenic | 40.0% |
| ! | AGTTTTTGTAACAGGTCTGC+AGG | - | tig0024833:3967-3986 | None:intergenic | 40.0% |
| CGGTGAATTTGACACAATCA+TGG | - | tig0024833:4102-4121 | None:intergenic | 40.0% | |
| ! | TTAGTGCTTGTTTGGATTGG+CGG | - | tig0024833:4122-4141 | None:intergenic | 40.0% |
| TTGGCATCAACAATGGAAGA+AGG | + | tig0024833:4530-4549 | Msa1420580:CDS | 40.0% | |
| TGGCATCAACAATGGAAGAA+GGG | + | tig0024833:4531-4550 | Msa1420580:CDS | 40.0% | |
| TCAAACTCAGAGCCAATTCA+TGG | + | tig0024833:4554-4573 | Msa1420580:CDS | 40.0% | |
| GATGTATGCAACCTCAATTG+TGG | + | tig0024833:4667-4686 | Msa1420580:intron | 40.0% | |
| GAGTCTTTGCAACAAGTCTA+GGG | - | tig0024833:4765-4784 | None:intergenic | 40.0% | |
| TGAGTCTTTGCAACAAGTCT+AGG | - | tig0024833:4766-4785 | None:intergenic | 40.0% | |
| ACTTCCTGTGATATACCGTT+AGG | + | tig0024833:4913-4932 | Msa1420580:intron | 40.0% | |
| CTTCCTGTGATATACCGTTA+GGG | + | tig0024833:4914-4933 | Msa1420580:intron | 40.0% | |
| GTTTCATTTGGCACCAACAA+TGG | + | tig0024833:5197-5216 | Msa1420580:CDS | 40.0% | |
| TCTAACTCAGAGCCAATTCA+TGG | + | tig0024833:5228-5247 | Msa1420580:CDS | 40.0% | |
| CTTGCGAAATGACATCGAAT+GGG | + | tig0024833:5257-5276 | Msa1420580:intron | 40.0% | |
| TTGCGAAATGACATCGAATG+GGG | + | tig0024833:5258-5277 | Msa1420580:intron | 40.0% | |
| GAAACTTCTTTACCGTTTCG+CGG | - | tig0024833:5284-5303 | None:intergenic | 40.0% | |
| ! | CTCCTTTTTACAGAACCACT+AGG | + | tig0024833:5330-5349 | Msa1420580:intron | 40.0% |
| ! | CTCCTAGTGGTTCTGTAAAA+AGG | - | tig0024833:5335-5354 | None:intergenic | 40.0% |
| !! | TTTTATTGGCCTGGGAAAGA+TGG | + | tig0024833:5415-5434 | Msa1420580:CDS | 40.0% |
| ! | AAGTGTTTCATGGTGATGCA+TGG | + | tig0024833:5449-5468 | Msa1420580:exon | 40.0% |
| TGACCATCAGACCATGTCAA+TGG | - | tig0024833:2393-2412 | None:intergenic | 45.0% | |
| ! | GCCAGGTTTCGAGAACATTT+TGG | - | tig0024833:2556-2575 | None:intergenic | 45.0% |
| AAATGTTCTCGAAACCTGGC+TGG | + | tig0024833:2556-2575 | Msa1420580:intron | 45.0% | |
| ! | ACTCTGGTTTCCATCGGAAA+GGG | - | tig0024833:2633-2652 | None:intergenic | 45.0% |
| ! | AACTCTGGTTTCCATCGGAA+AGG | - | tig0024833:2634-2653 | None:intergenic | 45.0% |
| GAAAGCAGACCGTTATGTAG+TGG | + | tig0024833:2782-2801 | Msa1420580:intron | 45.0% | |
| TATTATTTGGCAACCGGGGT+CGG | + | tig0024833:2892-2911 | Msa1420580:CDS | 45.0% | |
| CGGATCGAGTAATCCAAACA+TGG | + | tig0024833:2912-2931 | Msa1420580:CDS | 45.0% | |
| AGAACCGGAGGTTCTTCATT+TGG | - | tig0024833:3022-3041 | None:intergenic | 45.0% | |
| ! | ATTGGCTTCTCTGGTAGAAC+CGG | - | tig0024833:3037-3056 | None:intergenic | 45.0% |
| !! | AACATAGCCATTGGCTTCTC+TGG | - | tig0024833:3046-3065 | None:intergenic | 45.0% |
| CGAAAATATAGGTTCCTCGG+AGG | + | tig0024833:3069-3088 | Msa1420580:CDS | 45.0% | |
| TCAGTCAACGGTATTAAGCC+AGG | - | tig0024833:3259-3278 | None:intergenic | 45.0% | |
| CCAGCTTCTTCTTCAGTCAA+CGG | - | tig0024833:3271-3290 | None:intergenic | 45.0% | |
| ! | TTCAACTGATGGCTCTACCA+CGG | - | tig0024833:3323-3342 | None:intergenic | 45.0% |
| ! | AACAAGGTGATGATGAGCGT+TGG | - | tig0024833:3556-3575 | None:intergenic | 45.0% |
| GCATCTTGAGGCCAAAAGAA+AGG | + | tig0024833:3595-3614 | Msa1420580:intron | 45.0% | |
| ! | GCTGGCAATGTTCTAAGTCA+TGG | + | tig0024833:3803-3822 | Msa1420580:intron | 45.0% |
| AGTCTTTGCAACCACAACTG+AGG | - | tig0024833:3889-3908 | None:intergenic | 45.0% | |
| TGATGTTGCAACCCAGATCA+CGG | + | tig0024833:3919-3938 | Msa1420580:intron | 45.0% | |
| ! | TGTCTGTTTGGAACCAATCG+CGG | + | tig0024833:4016-4035 | Msa1420580:intron | 45.0% |
| ! | ATGGCGACTCATGGTGATTT+TGG | - | tig0024833:4083-4102 | None:intergenic | 45.0% |
| AACAACAGGGCTTCACTTGT+AGG | + | tig0024833:4258-4277 | Msa1420580:intron | 45.0% | |
| ! | CGCAAGGCATTACCATGAAT+TGG | - | tig0024833:4569-4588 | None:intergenic | 45.0% |
| CTTGCGAAATGACATCCAGT+GGG | + | tig0024833:4583-4602 | Msa1420580:CDS | 45.0% | |
| TTGCGAAATGACATCCAGTG+GGG | + | tig0024833:4584-4603 | Msa1420580:CDS | 45.0% | |
| ! | CTCAATTGTGGTTTGCGTTG+CGG | + | tig0024833:4679-4698 | Msa1420580:intron | 45.0% |
| AATCTGGGCAGCAACATCAA+TGG | - | tig0024833:4722-4741 | None:intergenic | 45.0% | |
| ! | TGATGTTGCTGCCCAGATTT+TGG | + | tig0024833:4723-4742 | Msa1420580:intron | 45.0% |
| AAGCCCTAACGGTATATCAC+AGG | - | tig0024833:4920-4939 | None:intergenic | 45.0% | |
| CTAACTCAACCCTACAAAGC+TGG | - | tig0024833:4945-4964 | None:intergenic | 45.0% | |
| ! | CAGCTTTGTAGGGTTGAGTT+AGG | + | tig0024833:4943-4962 | Msa1420580:intron | 45.0% |
| ! | CGCAAGGCATTACCATGAAT+TGG | - | tig0024833:4569-4588 | None:intergenic | 45.0% |
| ! | CCATTCGATGTCATTTCGCA+AGG | - | tig0024833:5259-5278 | None:intergenic | 45.0% |
| CCTTGCGAAATGACATCGAA+TGG | + | tig0024833:5256-5275 | Msa1420580:intron | 45.0% | |
| AGCTCTTATCCATCTTTCCC+AGG | - | tig0024833:5427-5446 | None:intergenic | 45.0% | |
| CAGATGGCACTGCATGCAAA+GGG | - | tig0024833:1324-1343 | None:intergenic | 50.0% | |
| TCAGATGGCACTGCATGCAA+AGG | - | tig0024833:1325-1344 | None:intergenic | 50.0% | |
| TGCAGTGCCATCTGAACAAC+AGG | + | tig0024833:1330-1349 | Msa1420580:CDS | 50.0% | |
| TGGTAATCCAGAGTTCGGTC+GGG | - | tig0024833:2607-2626 | None:intergenic | 50.0% | |
| CTGGTAATCCAGAGTTCGGT+CGG | - | tig0024833:2608-2627 | None:intergenic | 50.0% | |
| ! | GGCTCTGGTAATCCAGAGTT+CGG | - | tig0024833:2612-2631 | None:intergenic | 50.0% |
| ATTACCAGAGCCCTTTCCGA+TGG | + | tig0024833:2620-2639 | Msa1420580:intron | 50.0% | |
| TGTGTTCAGGATATGCTGGC+TGG | + | tig0024833:2824-2843 | Msa1420580:intron | 50.0% | |
| GGTTCTACCAGAGAAGCCAA+TGG | + | tig0024833:3036-3055 | Msa1420580:CDS | 50.0% | |
| ACTTTCTGTGAGATCCTCCG+AGG | - | tig0024833:3086-3105 | None:intergenic | 50.0% | |
| ! | CCGTTGACTGAAGAAGAAGC+TGG | + | tig0024833:3268-3287 | Msa1420580:CDS | 50.0% |
| ACTCATCAAGCGGTTACCTC+TGG | - | tig0024833:3373-3392 | None:intergenic | 50.0% | |
| CGGAAAATCGCAGTCAAGTG+TGG | + | tig0024833:3850-3869 | Msa1420580:intron | 50.0% | |
| GATGCATGCAACCTCAGTTG+TGG | + | tig0024833:3875-3894 | Msa1420580:intron | 50.0% | |
| GACACAATCATGGCGACTCA+TGG | - | tig0024833:4092-4111 | None:intergenic | 50.0% | |
| ! | CCACTGGATGTCATTTCGCA+AGG | - | tig0024833:4585-4604 | None:intergenic | 50.0% |
| CCTTGCGAAATGACATCCAG+TGG | + | tig0024833:4582-4601 | Msa1420580:CDS | 50.0% | |
| CGCAACGCAAACCACAATTG+AGG | - | tig0024833:4681-4700 | None:intergenic | 50.0% | |
| CAAAGCTGGTGAAGCCCTAA+CGG | - | tig0024833:4931-4950 | None:intergenic | 50.0% | |
| ! | TAGGGCTTCACCAGCTTTGT+AGG | + | tig0024833:4932-4951 | Msa1420580:intron | 50.0% |
| ! | AGGGCTTCACCAGCTTTGTA+GGG | + | tig0024833:4933-4952 | Msa1420580:intron | 50.0% |
| TAATCCAGAGTTCGGTCGGG+AGG | - | tig0024833:2604-2623 | None:intergenic | 55.0% | |
| GTTTCCATCGGAAAGGGCTC+TGG | - | tig0024833:2627-2646 | None:intergenic | 55.0% | |
| TGGATTACTCGATCCGACCC+CGG | - | tig0024833:2908-2927 | None:intergenic | 55.0% | |
| GGAGGTCCTGTTCTTGTACC+TGG | + | tig0024833:3238-3257 | Msa1420580:CDS | 55.0% | |
| AAGGTTTGCGGCCGTGATCT+GGG | - | tig0024833:3933-3952 | None:intergenic | 55.0% | |
| AAAGGTTTGCGGCCGTGATC+TGG | - | tig0024833:3934-3953 | None:intergenic | 55.0% | |
| ! | CTGTTTGGAACCAATCGCGG+TGG | + | tig0024833:4019-4038 | Msa1420580:intron | 55.0% |
| CATCCAGTGGGGCTTCGAAA+CGG | + | tig0024833:4595-4614 | Msa1420580:CDS | 55.0% | |
| TTACCGTTTCGAAGCCCCAC+TGG | - | tig0024833:4601-4620 | None:intergenic | 55.0% | |
| AACCTGGCTGGAGCAGTCCT+TGG | + | tig0024833:2568-2587 | Msa1420580:intron | 60.0% | |
| TTCGGTCGGGAGGTGAAGTC+TGG | - | tig0024833:2594-2613 | None:intergenic | 60.0% | |
| TTCACCTCCCGACCGAACTC+TGG | + | tig0024833:2597-2616 | Msa1420580:intron | 60.0% | |
| GGCTTCTCTGGTAGAACCGG+AGG | - | tig0024833:3034-3053 | None:intergenic | 60.0% | |
| GGAGCGGCACACTCATCAAG+CGG | - | tig0024833:3383-3402 | None:intergenic | 60.0% | |
| AATCACAGCGCCACCGCGAT+TGG | - | tig0024833:4032-4051 | None:intergenic | 60.0% | |
| CATCGAATGGGGCCGCGAAA+CGG | + | tig0024833:5269-5288 | Msa1420580:intron | 60.0% | |
| CGGGAGGTGAAGTCTGGCCA+AGG | - | tig0024833:2588-2607 | None:intergenic | 65.0% | |
| GGCCAAGGACTGCTCCAGCC+AGG | - | tig0024833:2573-2592 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024833 | gene | 1017 | 5666 | 1017 | ID=Msa1420580;Name=Msa1420580 |
| tig0024833 | mRNA | 1017 | 5666 | 1017 | ID=Msa1420580-mRNA-1;Parent=Msa1420580;Name=Msa1420580-mRNA-1;_AED=0.22;_eAED=0.22;_QI=125|0.83|0.71|1|1|1|7|202|470 |
| tig0024833 | exon | 1017 | 1351 | 1017 | ID=Msa1420580-mRNA-1:exon:1613;Parent=Msa1420580-mRNA-1 |
| tig0024833 | exon | 2127 | 2178 | 2127 | ID=Msa1420580-mRNA-1:exon:1614;Parent=Msa1420580-mRNA-1 |
| tig0024833 | exon | 2271 | 2431 | 2271 | ID=Msa1420580-mRNA-1:exon:1615;Parent=Msa1420580-mRNA-1 |
| tig0024833 | exon | 2833 | 3375 | 2833 | ID=Msa1420580-mRNA-1:exon:1616;Parent=Msa1420580-mRNA-1 |
| tig0024833 | exon | 4437 | 4616 | 4437 | ID=Msa1420580-mRNA-1:exon:1617;Parent=Msa1420580-mRNA-1 |
| tig0024833 | exon | 5105 | 5249 | 5105 | ID=Msa1420580-mRNA-1:exon:1618;Parent=Msa1420580-mRNA-1 |
| tig0024833 | exon | 5343 | 5666 | 5343 | ID=Msa1420580-mRNA-1:exon:1619;Parent=Msa1420580-mRNA-1 |
| tig0024833 | five_prime_UTR | 1017 | 1141 | 1017 | ID=Msa1420580-mRNA-1:five_prime_utr;Parent=Msa1420580-mRNA-1 |
| tig0024833 | CDS | 1142 | 1351 | 1142 | ID=Msa1420580-mRNA-1:cds;Parent=Msa1420580-mRNA-1 |
| tig0024833 | CDS | 2127 | 2178 | 2127 | ID=Msa1420580-mRNA-1:cds;Parent=Msa1420580-mRNA-1 |
| tig0024833 | CDS | 2271 | 2431 | 2271 | ID=Msa1420580-mRNA-1:cds;Parent=Msa1420580-mRNA-1 |
| tig0024833 | CDS | 2833 | 3375 | 2833 | ID=Msa1420580-mRNA-1:cds;Parent=Msa1420580-mRNA-1 |
| tig0024833 | CDS | 4437 | 4616 | 4437 | ID=Msa1420580-mRNA-1:cds;Parent=Msa1420580-mRNA-1 |
| tig0024833 | CDS | 5105 | 5249 | 5105 | ID=Msa1420580-mRNA-1:cds;Parent=Msa1420580-mRNA-1 |
| tig0024833 | CDS | 5343 | 5464 | 5343 | ID=Msa1420580-mRNA-1:cds;Parent=Msa1420580-mRNA-1 |
| tig0024833 | three_prime_UTR | 5465 | 5666 | 5465 | ID=Msa1420580-mRNA-1:three_prime_utr;Parent=Msa1420580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
