Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0669870 | Msa0678930 | 0.818516 | 1.881614e-52 | -8.615850e-47 |
| Msa0669870 | Msa0811080 | 0.817228 | 3.677593e-52 | -8.615850e-47 |
| Msa0669870 | Msa0885290 | 0.816252 | 6.086594e-52 | -8.615850e-47 |
| Msa0669870 | Msa0887990 | 0.820393 | 7.022456e-53 | -8.615850e-47 |
| Msa0669870 | Msa1146110 | 0.814495 | 1.496216e-51 | -8.615850e-47 |
| Msa0669870 | Msa1187940 | 0.820806 | 5.646357e-53 | -8.615850e-47 |
| Msa0669870 | Msa1187950 | 0.807474 | 4.967187e-50 | -8.615850e-47 |
| Msa0669870 | Msa1438250 | 0.805241 | 1.467957e-49 | -8.615850e-47 |
| Msa0326200 | Msa0669870 | 0.800112 | 1.678993e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 26 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACAATCTTTGAATCATAT+TGG | 0.304668 | 4_4:+11849131 | None:intergenic |
| TCTCTAAACTGGTCACTAAT+TGG | 0.307249 | 4_4:-11852753 | Msa0669870:five_prime_UTR |
| ATGCAGTGACTAATTTATTT+CGG | 0.317760 | 4_4:-11852776 | None:intergenic |
| GGTATTAAGTAAGTTCTATA+AGG | 0.327374 | 4_4:-11849028 | Msa0669870:three_prime_UTR |
| ATTTATTTCGGTCTCTAAAC+TGG | 0.346102 | 4_4:-11852764 | Msa0669870:five_prime_UTR |
| CACATGAAGTGTTTGAAACT+TGG | 0.361134 | 4_4:+11852661 | None:intergenic |
| CTCCGTTCTAGTTTCTTAAG+AGG | 0.374795 | 4_4:-11849099 | Msa0669870:three_prime_UTR |
| TATTGTAGGTTTGCTTTACT+AGG | 0.380164 | 4_4:-11849307 | Msa0669870:intron |
| GTTTGCTTTACTAGGATGTC+AGG | 0.381932 | 4_4:-11849299 | Msa0669870:CDS |
| TTGAAACTTGGTATTCTTCA+AGG | 0.385349 | 4_4:+11852673 | None:intergenic |
| AACTATTGATGACTTAAGCT+TGG | 0.453768 | 4_4:+11849051 | None:intergenic |
| GAGCACAATGACTCCACAAC+AGG | 0.490241 | 4_4:-11849236 | Msa0669870:CDS |
| AAATTTCAGAAGATTAAGAA+TGG | 0.497382 | 4_4:-11849260 | Msa0669870:CDS |
| AAGCTTAAGTCATCAATAGT+TGG | 0.526133 | 4_4:-11849049 | Msa0669870:three_prime_UTR |
| TTTGCTTTACTAGGATGTCA+GGG | 0.545993 | 4_4:-11849298 | Msa0669870:CDS |
| GTTCTATAAGGATAAGAGCT+TGG | 0.551288 | 4_4:-11849016 | Msa0669870:three_prime_UTR |
| ACTTCTCTTCAGACCTTGCA+AGG | 0.566682 | 4_4:-11852618 | Msa0669870:intron |
| CAATCTTTGAATCATATTGG+AGG | 0.579282 | 4_4:+11849134 | None:intergenic |
| TTAAGAAACTAGAACGGAGA+AGG | 0.582678 | 4_4:+11849103 | None:intergenic |
| TACAAACTAACAAAGCTACA+TGG | 0.599307 | 4_4:+11848991 | None:intergenic |
| ATAATAGGAAGTACCTTGCA+AGG | 0.599340 | 4_4:+11852605 | None:intergenic |
| TTGCAAGGTCTGAAGAGAAG+TGG | 0.616653 | 4_4:+11852620 | None:intergenic |
| CTCCTCTTAAGAAACTAGAA+CGG | 0.632518 | 4_4:+11849097 | None:intergenic |
| ATAACCGCTGAAGTGTGTAT+CGG | 0.655618 | 4_4:-11849157 | Msa0669870:three_prime_UTR |
| ATCTTGTAGACAAGTGACAG+TGG | 0.672934 | 4_4:-11849205 | Msa0669870:exon |
| GAGGCCGATACACACTTCAG+CGG | 0.712025 | 4_4:+11849153 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTATATTATAATTCTTAA+TGG | + | chr4_4:11852340-11852359 | None:intergenic | 10.0% |
| !! | TAAATTGTAATTATTATTGT+AGG | - | chr4_4:11852397-11852416 | Msa0669870:intron | 10.0% |
| !!! | CATATATCAAAATTTCATTT+TGG | - | chr4_4:11851368-11851387 | Msa0669870:intron | 15.0% |
| !! | AAAATAAATCTAACGAAAAT+CGG | - | chr4_4:11852299-11852318 | Msa0669870:intron | 15.0% |
| !!! | TCAAATGATAATGGTATAAT+AGG | + | chr4_4:11849131-11849150 | None:intergenic | 20.0% |
| !! | TATTATACCATTATCATTTG+AGG | - | chr4_4:11849130-11849149 | Msa0669870:three_prime_UTR | 20.0% |
| !! | ATTATACCATTATCATTTGA+GGG | - | chr4_4:11849131-11849150 | Msa0669870:three_prime_UTR | 20.0% |
| !! | TGATACATTTGTATTTAGTT+TGG | + | chr4_4:11849677-11849696 | None:intergenic | 20.0% |
| !!! | GTTTATTTGACTTTGTATTT+TGG | + | chr4_4:11849734-11849753 | None:intergenic | 20.0% |
| !!! | AGATTCTTGTTAATTTTAAG+TGG | + | chr4_4:11849930-11849949 | None:intergenic | 20.0% |
| !!! | TTGTTAATTGTTGATTAAGA+TGG | + | chr4_4:11850094-11850113 | None:intergenic | 20.0% |
| !! | AACAAAAACATCATTATCAA+CGG | - | chr4_4:11850231-11850250 | Msa0669870:intron | 20.0% |
| !!! | GTTGTAATTGTTCTTTTATT+TGG | + | chr4_4:11850441-11850460 | None:intergenic | 20.0% |
| !!! | AGGAAATAACTTTGTTTAAA+GGG | + | chr4_4:11850805-11850824 | None:intergenic | 20.0% |
| !!! | AAGGAAATAACTTTGTTTAA+AGG | + | chr4_4:11850806-11850825 | None:intergenic | 20.0% |
| !!! | TTGAAGAAAAATGCATTTTT+AGG | - | chr4_4:11850893-11850912 | Msa0669870:intron | 20.0% |
| !!! | TGAAGAAAAATGCATTTTTA+GGG | - | chr4_4:11850894-11850913 | Msa0669870:intron | 20.0% |
| !! | TCAAAAACACTAAAATTTCT+GGG | - | chr4_4:11850977-11850996 | Msa0669870:intron | 20.0% |
| !!! | ATCATACTCATTTTTCAAAA+TGG | - | chr4_4:11851214-11851233 | Msa0669870:intron | 20.0% |
| !!! | ATTTTGATATATGAAGTTGT+TGG | + | chr4_4:11851361-11851380 | None:intergenic | 20.0% |
| !!! | TTTTCATGAAATTGATGAAT+TGG | + | chr4_4:11851714-11851733 | None:intergenic | 20.0% |
| !! | ATTCATCAATTTCATGAAAA+TGG | - | chr4_4:11851714-11851733 | Msa0669870:intron | 20.0% |
| !! | TTCATCAATTTCATGAAAAT+GGG | - | chr4_4:11851715-11851734 | Msa0669870:intron | 20.0% |
| !! | AAATAAATCTAACGAAAATC+GGG | - | chr4_4:11852300-11852319 | Msa0669870:intron | 20.0% |
| !!! | CAATTGCAAGTATTTTAATT+AGG | + | chr4_4:11852369-11852388 | None:intergenic | 20.0% |
| !! | AAATTTCAGAAGATTAAGAA+TGG | - | chr4_4:11852458-11852477 | Msa0669870:intron | 20.0% |
| !!! | ATGTTAAACCTACTTTTACA+TGG | - | chr4_4:11849264-11849283 | Msa0669870:CDS | 25.0% |
| !!! | TTGTTGATGAGATTTCTTTT+AGG | - | chr4_4:11849300-11849319 | Msa0669870:CDS | 25.0% |
| ! | TACAATAACAAAACACAACA+GGG | + | chr4_4:11849342-11849361 | None:intergenic | 25.0% |
| ! | TTTACCGCTTATTAGAAATA+GGG | + | chr4_4:11849521-11849540 | None:intergenic | 25.0% |
| !! | TTTTACCGCTTATTAGAAAT+AGG | + | chr4_4:11849522-11849541 | None:intergenic | 25.0% |
| ! | ATGTATGAATTGTGGTTATT+CGG | + | chr4_4:11849589-11849608 | None:intergenic | 25.0% |
| ! | TATATAACTCATAAACACTC+TGG | - | chr4_4:11849647-11849666 | Msa0669870:intron | 25.0% |
| !! | ATATTCTGTTATTTGAGGTT+TGG | + | chr4_4:11849701-11849720 | None:intergenic | 25.0% |
| !! | TTGAGATATTCTGTTATTTG+AGG | + | chr4_4:11849706-11849725 | None:intergenic | 25.0% |
| ! | AATTCAACGACTATAATCAA+CGG | - | chr4_4:11850343-11850362 | Msa0669870:intron | 25.0% |
| !!! | GTTCTTTTATTTGGAATGTA+AGG | + | chr4_4:11850432-11850451 | None:intergenic | 25.0% |
| ! | ATTATGAGATGATGTATGAA+TGG | + | chr4_4:11850498-11850517 | None:intergenic | 25.0% |
| ! | TCATATCAATCTAATCATAG+AGG | - | chr4_4:11850517-11850536 | Msa0669870:intron | 25.0% |
| ! | CATATCAATCTAATCATAGA+GGG | - | chr4_4:11850518-11850537 | Msa0669870:intron | 25.0% |
| ! | TGATTGAAAATGATCATTGA+AGG | + | chr4_4:11850559-11850578 | None:intergenic | 25.0% |
| ! | AGATTACATAAGCAATTCAT+CGG | - | chr4_4:11850693-11850712 | Msa0669870:intron | 25.0% |
| !! | GGAAATAACTTTGTTTAAAG+GGG | + | chr4_4:11850804-11850823 | None:intergenic | 25.0% |
| !!! | AATTTTAGTGTTTTTGACTC+TGG | + | chr4_4:11850974-11850993 | None:intergenic | 25.0% |
| ! | GTCAAAAACACTAAAATTTC+TGG | - | chr4_4:11850976-11850995 | Msa0669870:intron | 25.0% |
| !!! | AGGTTTTGGAAAATGATTTT+GGG | + | chr4_4:11851191-11851210 | None:intergenic | 25.0% |
| ! | GTTGAATTTGTATGTCAAAA+TGG | + | chr4_4:11851612-11851631 | None:intergenic | 25.0% |
| ! | TCACTAACACAAGTTTATAA+AGG | - | chr4_4:11851921-11851940 | Msa0669870:intron | 25.0% |
| ! | TTTATAAAGGCTCACTTAAT+GGG | - | chr4_4:11851934-11851953 | Msa0669870:intron | 25.0% |
| !! | TTTGAGGTTGAATTAGAAAT+GGG | + | chr4_4:11851988-11852007 | None:intergenic | 25.0% |
| !!! | TTTTGAGGTTGAATTAGAAA+TGG | + | chr4_4:11851989-11852008 | None:intergenic | 25.0% |
| !!! | GGTTTTATTTTACTAAGTGT+TGG | + | chr4_4:11852087-11852106 | None:intergenic | 25.0% |
| !!! | TTATTTTTAGTGCTTAGTGA+GGG | + | chr4_4:11852108-11852127 | None:intergenic | 25.0% |
| ! | TAAGCACTAAAAATAACCTT+CGG | - | chr4_4:11852112-11852131 | Msa0669870:intron | 25.0% |
| !! | AATTTTGTAATTTTTGCCGA+AGG | + | chr4_4:11852131-11852150 | None:intergenic | 25.0% |
| !!! | TTTTAGTCATTTTGGACTTA+GGG | + | chr4_4:11852182-11852201 | None:intergenic | 25.0% |
| !!! | ATTTTAGTCATTTTGGACTT+AGG | + | chr4_4:11852183-11852202 | None:intergenic | 25.0% |
| !!! | GAAGGATATTTTAGTCATTT+TGG | + | chr4_4:11852190-11852209 | None:intergenic | 25.0% |
| ! | ACACAATCTTTGAATCATAT+TGG | + | chr4_4:11852590-11852609 | None:intergenic | 25.0% |
| ! | GGTATTAAGTAAGTTCTATA+AGG | - | chr4_4:11852690-11852709 | Msa0669870:CDS | 25.0% |
| ATTTATTTCGGTCTCTAAAC+TGG | - | chr4_4:11848954-11848973 | Msa0669870:three_prime_UTR | 30.0% | |
| TTGAAACTTGGTATTCTTCA+AGG | + | chr4_4:11849048-11849067 | None:intergenic | 30.0% | |
| ATTAGTCCCTCAAATGATAA+TGG | + | chr4_4:11849140-11849159 | None:intergenic | 30.0% | |
| CTACAATAACAAAACACAAC+AGG | + | chr4_4:11849343-11849362 | None:intergenic | 30.0% | |
| !!! | CTGTTGTGTTTTGTTATTGT+AGG | - | chr4_4:11849341-11849360 | Msa0669870:intron | 30.0% |
| !!! | GTTTTGTTATTGTAGGATGT+AGG | - | chr4_4:11849348-11849367 | Msa0669870:intron | 30.0% |
| !! | AACACCCTATTTCTAATAAG+CGG | - | chr4_4:11849514-11849533 | Msa0669870:intron | 30.0% |
| CCTTATGTATGTATGAATTG+TGG | + | chr4_4:11849597-11849616 | None:intergenic | 30.0% | |
| CCACAATTCATACATACATA+AGG | - | chr4_4:11849594-11849613 | Msa0669870:intron | 30.0% | |
| !! | TGATGTTTTTGTTGCATCAT+GGG | + | chr4_4:11850224-11850243 | None:intergenic | 30.0% |
| !! | ATGATGTTTTTGTTGCATCA+TGG | + | chr4_4:11850225-11850244 | None:intergenic | 30.0% |
| ATGATGTATGAATGGTTGTT+AGG | + | chr4_4:11850490-11850509 | None:intergenic | 30.0% | |
| ! | TTGAACTGTTTACTTGGTTT+TGG | + | chr4_4:11850628-11850647 | None:intergenic | 30.0% |
| ATGTGACTTATGAGAATACA+TGG | + | chr4_4:11850660-11850679 | None:intergenic | 30.0% | |
| TATTGAGTTCTTATGTTGCT+TGG | + | chr4_4:11850779-11850798 | None:intergenic | 30.0% | |
| TTATGATAGAGCTAAGTGTT+AGG | + | chr4_4:11851140-11851159 | None:intergenic | 30.0% | |
| !! | TTTGGAAAATGATTTTGGGA+TGG | + | chr4_4:11851187-11851206 | None:intergenic | 30.0% |
| !!! | GAGGTTTTGGAAAATGATTT+TGG | + | chr4_4:11851192-11851211 | None:intergenic | 30.0% |
| TGAAAAATGAGTATGATGTG+AGG | + | chr4_4:11851211-11851230 | None:intergenic | 30.0% | |
| ! | GTTGATGGATGAATTTAACT+TGG | + | chr4_4:11851325-11851344 | None:intergenic | 30.0% |
| !! | TATGATGAGATTTGTTGTTG+TGG | + | chr4_4:11851435-11851454 | None:intergenic | 30.0% |
| ! | TGTTGATGAATTGATGCATT+GGG | + | chr4_4:11851476-11851495 | None:intergenic | 30.0% |
| ! | TTGTTGATGAATTGATGCAT+TGG | + | chr4_4:11851477-11851496 | None:intergenic | 30.0% |
| AAGTTGTGGTTGTTAAATTG+TGG | + | chr4_4:11851543-11851562 | None:intergenic | 30.0% | |
| ATTGATGAAGAATGAAGTTG+TGG | + | chr4_4:11851557-11851576 | None:intergenic | 30.0% | |
| !!! | AAAAAGGGTTTTGAAGAGAA+GGG | + | chr4_4:11851822-11851841 | None:intergenic | 30.0% |
| GTTTATAAAGGCTCACTTAA+TGG | - | chr4_4:11851933-11851952 | Msa0669870:intron | 30.0% | |
| CTTATCTCACAAACCTTAAT+GGG | - | chr4_4:11851957-11851976 | Msa0669870:intron | 30.0% | |
| ! | AGTGAGTAGTAACATTTTTG+AGG | + | chr4_4:11852004-11852023 | None:intergenic | 30.0% |
| AAATGTTACTACTCACTTAC+CGG | - | chr4_4:11852007-11852026 | Msa0669870:intron | 30.0% | |
| !!! | GTTATTTTTAGTGCTTAGTG+AGG | + | chr4_4:11852109-11852128 | None:intergenic | 30.0% |
| !! | TTTAGTCATTTTGGACTTAG+GGG | + | chr4_4:11852181-11852200 | None:intergenic | 30.0% |
| ! | TATTGTAGGTTTGCTTTACT+AGG | - | chr4_4:11852411-11852430 | Msa0669870:intron | 30.0% |
| CAATCTTTGAATCATATTGG+AGG | + | chr4_4:11852587-11852606 | None:intergenic | 30.0% | |
| ! | AACTATTGATGACTTAAGCT+TGG | + | chr4_4:11852670-11852689 | None:intergenic | 30.0% |
| AAGCTTAAGTCATCAATAGT+TGG | - | chr4_4:11852669-11852688 | Msa0669870:CDS | 30.0% | |
| TACAAACTAACAAAGCTACA+TGG | + | chr4_4:11852730-11852749 | None:intergenic | 30.0% | |
| TCTCTAAACTGGTCACTAAT+TGG | - | chr4_4:11848965-11848984 | Msa0669870:three_prime_UTR | 35.0% | |
| ! | CACATGAAGTGTTTGAAACT+TGG | + | chr4_4:11849060-11849079 | None:intergenic | 35.0% |
| !! | ATAATAGGAAGTACCTTGCA+AGG | + | chr4_4:11849116-11849135 | None:intergenic | 35.0% |
| AAATATGACCGAGATGTTAG+CGG | - | chr4_4:11849236-11849255 | Msa0669870:CDS | 35.0% | |
| ! | TTTTCTTGTACAACACAGTC+AGG | + | chr4_4:11849422-11849441 | None:intergenic | 35.0% |
| TATATTATTCCGCTGCTATG+TGG | + | chr4_4:11849631-11849650 | None:intergenic | 35.0% | |
| TCATGCAAGTGTCTAGATTA+GGG | + | chr4_4:11849785-11849804 | None:intergenic | 35.0% | |
| TTCATGCAAGTGTCTAGATT+AGG | + | chr4_4:11849786-11849805 | None:intergenic | 35.0% | |
| TAGACACTTGCATGAAAAAG+AGG | - | chr4_4:11849790-11849809 | Msa0669870:intron | 35.0% | |
| ATGTGTGTATGATACACTTG+TGG | + | chr4_4:11850060-11850079 | None:intergenic | 35.0% | |
| ! | TTGCATACTTGTTGGTGAAT+TGG | + | chr4_4:11850148-11850167 | None:intergenic | 35.0% |
| ATTCACCAACAAGTATGCAA+TGG | - | chr4_4:11850148-11850167 | Msa0669870:intron | 35.0% | |
| TTATCAACGGCTATAGTCAA+CGG | - | chr4_4:11850244-11850263 | Msa0669870:intron | 35.0% | |
| AATCAACGGCTATAAGTCAA+CGG | - | chr4_4:11850357-11850376 | Msa0669870:intron | 35.0% | |
| TTGGAATGTAAGGAACTATG+TGG | + | chr4_4:11850422-11850441 | None:intergenic | 35.0% | |
| ATAGAGGGTTCATAAGCAAT+TGG | - | chr4_4:11850533-11850552 | Msa0669870:intron | 35.0% | |
| !!! | TGTTTACTTGGTTTTGGCTT+AGG | + | chr4_4:11850622-11850641 | None:intergenic | 35.0% |
| AGGCAATTGAACTGTTTACT+TGG | + | chr4_4:11850634-11850653 | None:intergenic | 35.0% | |
| CTTATGAGAATACATGGCAT+AGG | + | chr4_4:11850654-11850673 | None:intergenic | 35.0% | |
| ! | AAACTTGTTCCAAAGTGTAG+GGG | + | chr4_4:11850860-11850879 | None:intergenic | 35.0% |
| ! | CAAACTTGTTCCAAAGTGTA+GGG | + | chr4_4:11850861-11850880 | None:intergenic | 35.0% |
| ! | TTTTATGCTCGAAAACGTGA+AGG | + | chr4_4:11851072-11851091 | None:intergenic | 35.0% |
| ! | ATGAGTATGATGTGAGGTTT+TGG | + | chr4_4:11851205-11851224 | None:intergenic | 35.0% |
| ! | TTTTGTTAGTCGAGTCGTTT+GGG | + | chr4_4:11851277-11851296 | None:intergenic | 35.0% |
| ! | ATTTTGTTAGTCGAGTCGTT+TGG | + | chr4_4:11851278-11851297 | None:intergenic | 35.0% |
| ! | GTGTTAAGTTGTTCATGTGA+AGG | + | chr4_4:11851395-11851414 | None:intergenic | 35.0% |
| ATGCATTGGGTATCATGAAT+TGG | + | chr4_4:11851463-11851482 | None:intergenic | 35.0% | |
| AGAATTAAGGTAAGAGGGTT+AGG | + | chr4_4:11851774-11851793 | None:intergenic | 35.0% | |
| GCTAGAGAATTAAGGTAAGA+GGG | + | chr4_4:11851779-11851798 | None:intergenic | 35.0% | |
| TAGAAGAGGCTAGAGAATTA+AGG | + | chr4_4:11851787-11851806 | None:intergenic | 35.0% | |
| !!! | GAAAAAGGGTTTTGAAGAGA+AGG | + | chr4_4:11851823-11851842 | None:intergenic | 35.0% |
| AAAGCTCAAGAGGAGAAAAA+GGG | + | chr4_4:11851837-11851856 | None:intergenic | 35.0% | |
| AAAAGCTCAAGAGGAGAAAA+AGG | + | chr4_4:11851838-11851857 | None:intergenic | 35.0% | |
| CTTGTGTTAGTGAAGAGATA+GGG | + | chr4_4:11851914-11851933 | None:intergenic | 35.0% | |
| ACTTGTGTTAGTGAAGAGAT+AGG | + | chr4_4:11851915-11851934 | None:intergenic | 35.0% | |
| GCTTATCTCACAAACCTTAA+TGG | - | chr4_4:11851956-11851975 | Msa0669870:intron | 35.0% | |
| ! | GGTTGAATTAGAAATGGGTT+AGG | + | chr4_4:11851983-11852002 | None:intergenic | 35.0% |
| !!! | CCGTTGGTGTTATATTTTAC+CGG | + | chr4_4:11852029-11852048 | None:intergenic | 35.0% |
| CCGGTAAAATATAACACCAA+CGG | - | chr4_4:11852026-11852045 | Msa0669870:intron | 35.0% | |
| !!! | GGGTATTTTGGTCATTTTGA+GGG | + | chr4_4:11852161-11852180 | None:intergenic | 35.0% |
| !!! | TTTTGGACTTAGGGGTATTT+TGG | + | chr4_4:11852173-11852192 | None:intergenic | 35.0% |
| !!! | TCTGTGTGTATTTTTGGTTG+GGG | + | chr4_4:11852232-11852251 | None:intergenic | 35.0% |
| !!! | CTCTGTGTGTATTTTTGGTT+GGG | + | chr4_4:11852233-11852252 | None:intergenic | 35.0% |
| ! | ATTGCCTCTGTGTGTATTTT+TGG | + | chr4_4:11852238-11852257 | None:intergenic | 35.0% |
| TTTGCTTTACTAGGATGTCA+GGG | - | chr4_4:11852420-11852439 | Msa0669870:intron | 35.0% | |
| !! | AAGATTTTGATGACCTGTTG+TGG | + | chr4_4:11852498-11852517 | None:intergenic | 35.0% |
| TTAAGAAACTAGAACGGAGA+AGG | + | chr4_4:11852618-11852637 | None:intergenic | 35.0% | |
| CTCCTCTTAAGAAACTAGAA+CGG | + | chr4_4:11852624-11852643 | None:intergenic | 35.0% | |
| GTTCTATAAGGATAAGAGCT+TGG | - | chr4_4:11852702-11852721 | Msa0669870:exon | 35.0% | |
| AATATGACCGAGATGTTAGC+GGG | - | chr4_4:11849237-11849256 | Msa0669870:CDS | 40.0% | |
| ! | CATTTTTCCCGCTAACATCT+CGG | + | chr4_4:11849247-11849266 | None:intergenic | 40.0% |
| CGTTTACGCCATGTAAAAGT+AGG | + | chr4_4:11849275-11849294 | None:intergenic | 40.0% | |
| ! | TTGGGTGTTGTGTAAACCAA+AGG | - | chr4_4:11849394-11849413 | Msa0669870:intron | 40.0% |
| CATGTTATACCACATAGCAG+CGG | - | chr4_4:11849619-11849638 | Msa0669870:intron | 40.0% | |
| TAGAGCCATTGCATACTTGT+TGG | + | chr4_4:11850156-11850175 | None:intergenic | 40.0% | |
| TAGACTCATCTAGATGCATG+TGG | - | chr4_4:11850174-11850193 | Msa0669870:intron | 40.0% | |
| TCATGCATCATATGTCGTGT+CGG | + | chr4_4:11850287-11850306 | None:intergenic | 40.0% | |
| !!! | CATCTAGGGGTGTTTTATGA+AGG | + | chr4_4:11850825-11850844 | None:intergenic | 40.0% |
| CTTCATAAAACACCCCTAGA+TGG | - | chr4_4:11850823-11850842 | Msa0669870:intron | 40.0% | |
| TAAAACACCCCTAGATGGTT+AGG | - | chr4_4:11850828-11850847 | Msa0669870:intron | 40.0% | |
| GCTTTATCCTAACCATCTAG+GGG | + | chr4_4:11850838-11850857 | None:intergenic | 40.0% | |
| ! | GGCTTTATCCTAACCATCTA+GGG | + | chr4_4:11850839-11850858 | None:intergenic | 40.0% |
| ! | CCAAACTTGTTCCAAAGTGT+AGG | + | chr4_4:11850862-11850881 | None:intergenic | 40.0% |
| !! | CCTACACTTTGGAACAAGTT+TGG | - | chr4_4:11850859-11850878 | Msa0669870:intron | 40.0% |
| GGAACAAGTTTGGAAGCAAT+TGG | - | chr4_4:11850869-11850888 | Msa0669870:intron | 40.0% | |
| ! | TTTAGGGTTCCTTGTCAAAC+AGG | - | chr4_4:11850910-11850929 | Msa0669870:intron | 40.0% |
| TTAGGGTTCCTTGTCAAACA+GGG | - | chr4_4:11850911-11850930 | Msa0669870:intron | 40.0% | |
| ! | AAAATTTCTGGGCAGAATCG+TGG | - | chr4_4:11850988-11851007 | Msa0669870:intron | 40.0% |
| TAGGAGAATGTAGGCGAAAA+CGG | + | chr4_4:11851121-11851140 | None:intergenic | 40.0% | |
| GCTAAGTGTTAGGAGAATGT+AGG | + | chr4_4:11851130-11851149 | None:intergenic | 40.0% | |
| TTTGTTAGTCGAGTCGTTTG+GGG | + | chr4_4:11851276-11851295 | None:intergenic | 40.0% | |
| ! | GGCTGAGTTTTTGATGTTGA+TGG | + | chr4_4:11851340-11851359 | None:intergenic | 40.0% |
| GGCTAGAGAATTAAGGTAAG+AGG | + | chr4_4:11851780-11851799 | None:intergenic | 40.0% | |
| GTTAGAGAGAAAAGCTCAAG+AGG | + | chr4_4:11851847-11851866 | None:intergenic | 40.0% | |
| TAACACCAACGGTCACTTAA+CGG | - | chr4_4:11852037-11852056 | Msa0669870:intron | 40.0% | |
| ATTTACCGTTAAGTGACCGT+TGG | + | chr4_4:11852045-11852064 | None:intergenic | 40.0% | |
| !! | TTTTGGTCATTTTGAGGGCA+GGG | + | chr4_4:11852156-11852175 | None:intergenic | 40.0% |
| !! | ATTTTGGTCATTTTGAGGGC+AGG | + | chr4_4:11852157-11852176 | None:intergenic | 40.0% |
| !!! | GGGGTATTTTGGTCATTTTG+AGG | + | chr4_4:11852162-11852181 | None:intergenic | 40.0% |
| !! | TCGTAGAATTCGGTGTTAGA+AGG | + | chr4_4:11852208-11852227 | None:intergenic | 40.0% |
| !!! | CCTCTGTGTGTATTTTTGGT+TGG | + | chr4_4:11852234-11852253 | None:intergenic | 40.0% |
| CCAACCAAAAATACACACAG+AGG | - | chr4_4:11852231-11852250 | Msa0669870:intron | 40.0% | |
| GTTTGCTTTACTAGGATGTC+AGG | - | chr4_4:11852419-11852438 | Msa0669870:intron | 40.0% | |
| ATCTTGTAGACAAGTGACAG+TGG | - | chr4_4:11852513-11852532 | Msa0669870:intron | 40.0% | |
| ATAACCGCTGAAGTGTGTAT+CGG | - | chr4_4:11852561-11852580 | Msa0669870:intron | 40.0% | |
| !! | CTCCGTTCTAGTTTCTTAAG+AGG | - | chr4_4:11852619-11852638 | Msa0669870:CDS | 40.0% |
| TTGCAAGGTCTGAAGAGAAG+TGG | + | chr4_4:11849101-11849120 | None:intergenic | 45.0% | |
| ACTTCTCTTCAGACCTTGCA+AGG | - | chr4_4:11849100-11849119 | Msa0669870:three_prime_UTR | 45.0% | |
| ! | TGTAGGATGTAGGCTTTGTG+TGG | - | chr4_4:11849358-11849377 | Msa0669870:intron | 45.0% |
| TGTGGTGTGTGTTTCCTGTT+GGG | - | chr4_4:11849376-11849395 | Msa0669870:intron | 45.0% | |
| TGGTTTACACAACACCCAAC+AGG | + | chr4_4:11849393-11849412 | None:intergenic | 45.0% | |
| ACAACACAGTCAGGATCCTT+TGG | + | chr4_4:11849413-11849432 | None:intergenic | 45.0% | |
| ! | CTAGATTAGGGCTCTGATCT+AGG | + | chr4_4:11849773-11849792 | None:intergenic | 45.0% |
| AAAAGAGGAACTCCACTCCT+CGG | - | chr4_4:11849805-11849824 | Msa0669870:intron | 45.0% | |
| TTACCACCTACCTTTCCGTA+TGG | + | chr4_4:11849875-11849894 | None:intergenic | 45.0% | |
| TGTGGTACCAATTCTCCTCA+AGG | - | chr4_4:11850192-11850211 | Msa0669870:intron | 45.0% | |
| GGCTATAGTCAACGGCAATA+TGG | - | chr4_4:11850252-11850271 | Msa0669870:intron | 45.0% | |
| ! | GGGCTTTATCCTAACCATCT+AGG | + | chr4_4:11850840-11850859 | None:intergenic | 45.0% |
| AGGATAAAGCCCCTACACTT+TGG | - | chr4_4:11850848-11850867 | Msa0669870:intron | 45.0% | |
| TGGAAAAATCGTGCCACGAT+GGG | + | chr4_4:11850954-11850973 | None:intergenic | 45.0% | |
| !! | CGGCATCGAAAACGGATTAA+CGG | + | chr4_4:11851101-11851120 | None:intergenic | 45.0% |
| TTGTTAGTCGAGTCGTTTGG+GGG | + | chr4_4:11851275-11851294 | None:intergenic | 45.0% | |
| !! | GAAATGGGTTAGGCCCATTA+AGG | + | chr4_4:11851973-11851992 | None:intergenic | 45.0% |
| !! | TTTGGTCATTTTGAGGGCAG+GGG | + | chr4_4:11852155-11852174 | None:intergenic | 45.0% |
| TGGTTGGGGTTCGTAGAATT+CGG | + | chr4_4:11852218-11852237 | None:intergenic | 45.0% | |
| GTGTGGTGTGTGTTTCCTGT+TGG | - | chr4_4:11849375-11849394 | Msa0669870:intron | 50.0% | |
| ! | GTTGTTGCTTGTTGATGCCG+AGG | + | chr4_4:11849825-11849844 | None:intergenic | 50.0% |
| ACTCCATCTACCCGTCCATA+CGG | - | chr4_4:11849857-11849876 | Msa0669870:intron | 50.0% | |
| TTTCCGTATGGACGGGTAGA+TGG | + | chr4_4:11849863-11849882 | None:intergenic | 50.0% | |
| ATCTACCCGTCCATACGGAA+AGG | - | chr4_4:11849862-11849881 | Msa0669870:intron | 50.0% | |
| ACCTACCTTTCCGTATGGAC+GGG | + | chr4_4:11849870-11849889 | None:intergenic | 50.0% | |
| CACCTACCTTTCCGTATGGA+CGG | + | chr4_4:11849871-11849890 | None:intergenic | 50.0% | |
| AGGTAGGTGGTAAACCACTG+AGG | - | chr4_4:11849882-11849901 | Msa0669870:intron | 50.0% | |
| GGTAGGTGGTAAACCACTGA+GGG | - | chr4_4:11849883-11849902 | Msa0669870:intron | 50.0% | |
| GATGTAACGCTAACCCTCAG+TGG | + | chr4_4:11849899-11849918 | None:intergenic | 50.0% | |
| GTGACGACCTTGAGGAGAAT+TGG | + | chr4_4:11850202-11850221 | None:intergenic | 50.0% | |
| TTCCTTGTCAAACAGGGTCG+TGG | - | chr4_4:11850917-11850936 | Msa0669870:intron | 50.0% | |
| CTGGAAAAATCGTGCCACGA+TGG | + | chr4_4:11850955-11850974 | None:intergenic | 50.0% | |
| ACTAAGAACGTGCCACGATG+CGG | + | chr4_4:11851024-11851043 | None:intergenic | 50.0% | |
| ! | GGCGAAAACGGCATCGAAAA+CGG | + | chr4_4:11851109-11851128 | None:intergenic | 50.0% |
| TCGAGTCGTTTGGGGGAAAA+CGG | + | chr4_4:11851268-11851287 | None:intergenic | 50.0% | |
| GGACTAGAGAGAGCTAGAAG+AGG | + | chr4_4:11851801-11851820 | None:intergenic | 50.0% | |
| GAGCACAATGACTCCACAAC+AGG | - | chr4_4:11852482-11852501 | Msa0669870:intron | 50.0% | |
| ! | TGCTTGTTGATGCCGAGGAG+TGG | + | chr4_4:11849820-11849839 | None:intergenic | 55.0% |
| ACCCGTCCATACGGAAAGGT+AGG | - | chr4_4:11849866-11849885 | Msa0669870:intron | 55.0% | |
| CGTCCATACGGAAAGGTAGG+TGG | - | chr4_4:11849869-11849888 | Msa0669870:intron | 55.0% | |
| CATCATGGGTGACGACCTTG+AGG | + | chr4_4:11850210-11850229 | None:intergenic | 55.0% | |
| TGCCACGACCCTGTTTGACA+AGG | + | chr4_4:11850922-11850941 | None:intergenic | 55.0% | |
| CTAAGAACGTGCCACGATGC+GGG | + | chr4_4:11851023-11851042 | None:intergenic | 55.0% | |
| CGAGTCGTTTGGGGGAAAAC+GGG | + | chr4_4:11851267-11851286 | None:intergenic | 55.0% | |
| GAGGCCGATACACACTTCAG+CGG | + | chr4_4:11852568-11852587 | None:intergenic | 55.0% | |
| TGGACGGGTAGATGGAGTGC+AGG | + | chr4_4:11849855-11849874 | None:intergenic | 60.0% | |
| TCAAACAGGGTCGTGGCACG+TGG | - | chr4_4:11850924-11850943 | Msa0669870:intron | 60.0% | |
| CAAACAGGGTCGTGGCACGT+GGG | - | chr4_4:11850925-11850944 | Msa0669870:intron | 60.0% | |
| TGGGCAGAATCGTGGCACGT+TGG | - | chr4_4:11850996-11851015 | Msa0669870:intron | 60.0% | |
| GGCACGTGGGTCTCCCATCG+TGG | - | chr4_4:11850938-11850957 | Msa0669870:intron | 70.0% | |
| GGCACGTTGGTCCCGCATCG+TGG | - | chr4_4:11851009-11851028 | Msa0669870:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 11848950 | 11852790 | 11848950 | ID=Msa0669870;Name=Msa0669870 |
| chr4_4 | mRNA | 11848950 | 11852790 | 11848950 | ID=Msa0669870-mRNA-1;Parent=Msa0669870;Name=Msa0669870-mRNA-1;_AED=0.23;_eAED=0.23;_QI=79|1|1|1|1|1|2|261|67 |
| chr4_4 | exon | 11848950 | 11849321 | 11848950 | ID=Msa0669870-mRNA-1:exon:3561;Parent=Msa0669870-mRNA-1 |
| chr4_4 | exon | 11852619 | 11852790 | 11852619 | ID=Msa0669870-mRNA-1:exon:3560;Parent=Msa0669870-mRNA-1 |
| chr4_4 | five_prime_UTR | 11852712 | 11852790 | 11852712 | ID=Msa0669870-mRNA-1:five_prime_utr;Parent=Msa0669870-mRNA-1 |
| chr4_4 | CDS | 11852619 | 11852711 | 11852619 | ID=Msa0669870-mRNA-1:cds;Parent=Msa0669870-mRNA-1 |
| chr4_4 | CDS | 11849211 | 11849321 | 11849211 | ID=Msa0669870-mRNA-1:cds;Parent=Msa0669870-mRNA-1 |
| chr4_4 | three_prime_UTR | 11848950 | 11849210 | 11848950 | ID=Msa0669870-mRNA-1:three_prime_utr;Parent=Msa0669870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
