AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0670160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 149 sgRNAs with CRISPR-Local

Find 590 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAGAACTTTCCATAATTT+TGG 0.113166 4_4:-12283256 None:intergenic
CTCCATGACAACGTAAATTT+TGG 0.128920 4_4:-12282731 None:intergenic
TTGGACGCTGATGGAGTATT+TGG 0.175096 4_4:+12283339 Msa0670160:three_prime_UTR
ACAACATGTCACAATATTAT+TGG 0.196900 4_4:+12279517 Msa0670160:CDS
TTTCAGCATTCCCTGAATTT+TGG 0.200187 4_4:-12282237 None:intergenic
ATTATGCAACGATATGAATT+AGG 0.208804 4_4:+12282505 Msa0670160:three_prime_UTR
TGTGTACTTAATCGCTTATT+TGG 0.222415 4_4:+12284022 Msa0670160:three_prime_UTR
ATGAATTTATATCCTTAATT+TGG 0.230579 4_4:+12283885 Msa0670160:three_prime_UTR
GCAATTGATATCCTTGTCTT+TGG 0.238131 4_4:-12283234 None:intergenic
GATATCAATTGCCAAAATTA+TGG 0.251618 4_4:+12283245 Msa0670160:three_prime_UTR
CTCTTTGTCAATAACTTTGA+TGG 0.256511 4_4:-12282599 None:intergenic
CCCTTTCGGTTTATCACTTC+CGG 0.257569 4_4:-12283021 None:intergenic
TTGGTGTCACACCAAAATTC+AGG 0.263487 4_4:+12282226 Msa0670160:three_prime_UTR
ATCAAATTCGGATCTCTAAA+TGG 0.267037 4_4:-12283114 None:intergenic
GAGGAACAGGCTTCTGATTC+TGG 0.267605 4_4:+12283825 Msa0670160:three_prime_UTR
CCAAAATTATGGAAAGTTCT+TGG 0.269642 4_4:+12283256 Msa0670160:three_prime_UTR
TAATCGCTTATTTGGCCCTT+TGG 0.278789 4_4:+12284030 Msa0670160:three_prime_UTR
ATTTGAAGGTCTCAGATTTC+GGG 0.280852 4_4:+12282923 Msa0670160:three_prime_UTR
TATGAATTAGGGAAATTATT+AGG 0.281229 4_4:+12282517 Msa0670160:three_prime_UTR
AATTTGAAGGTCTCAGATTT+CGG 0.285326 4_4:+12282922 Msa0670160:three_prime_UTR
TTTACAAATTCTGTATTCTT+TGG 0.286553 4_4:+12282207 Msa0670160:three_prime_UTR
CATTCTCCTTCACAAGCTTT+TGG 0.304368 4_4:-12283722 None:intergenic
TGGACGCTGATGGAGTATTT+GGG 0.306333 4_4:+12283340 Msa0670160:three_prime_UTR
CACAACGTTGTTACGAGAAA+TGG 0.318974 4_4:+12282465 Msa0670160:three_prime_UTR
CGTAATCTTGTATGTTCTAT+TGG 0.320139 4_4:+12283080 Msa0670160:three_prime_UTR
TTAAGGACATTGTTTGGAAT+TGG 0.327211 4_4:+12283757 Msa0670160:three_prime_UTR
ATCATACAGAAACCAAATTA+AGG 0.331475 4_4:-12283897 None:intergenic
TAGTTCCATCGTATCCCTTT+CGG 0.343888 4_4:-12283035 None:intergenic
CGATACATCTCTATCAAATT+CGG 0.345492 4_4:-12283126 None:intergenic
TCAATCATCCTTGATGAGAT+TGG 0.350111 4_4:+12282327 Msa0670160:three_prime_UTR
GGAGGTTTGTTCAAGATAGA+AGG 0.355234 4_4:+12283588 Msa0670160:three_prime_UTR
AATCGCTTATTTGGCCCTTT+GGG 0.355390 4_4:+12284031 Msa0670160:three_prime_UTR
TTAAAAGATAAACGAGTTGC+TGG 0.357975 4_4:+12282157 Msa0670160:three_prime_UTR
AGTTCTTTGTTGTCTGTGTC+AGG 0.365658 4_4:-12283309 None:intergenic
GATATCCTTGTCTTTGGATT+CGG 0.367866 4_4:-12283228 None:intergenic
TTGTCTGTGTCAGGAACAAT+AGG 0.369967 4_4:-12283300 None:intergenic
ACGTCCTTTCCTTCCTTCCT+TGG 0.370560 4_4:-12283613 None:intergenic
GAATGTTAGGCCTTCACTTA+AGG 0.372040 4_4:+12283740 Msa0670160:three_prime_UTR
ATCTTGTATGTTCTATTGGC+TGG 0.377876 4_4:+12283084 Msa0670160:three_prime_UTR
CAACATGTCACAATATTATT+GGG 0.389711 4_4:+12279518 Msa0670160:CDS
CAACAAAGAACTAGCTCCTT+TGG 0.400837 4_4:+12283320 Msa0670160:three_prime_UTR
CTTCACTTAAGGACATTGTT+TGG 0.406995 4_4:+12283751 Msa0670160:three_prime_UTR
CAATATTATTGGGTCAATAT+AGG 0.410837 4_4:+12279528 Msa0670160:CDS
AAGAAATTTGTAATCGTCTC+GGG 0.416115 4_4:+12283544 Msa0670160:three_prime_UTR
ATGGAACTAAAGCCGATATA+TGG 0.416883 4_4:+12283049 Msa0670160:three_prime_UTR
TGACTTGTCTGGTTTGTTTG+AGG 0.420676 4_4:+12283449 Msa0670160:three_prime_UTR
ATTACAAATTTCTTCAAACT+TGG 0.426779 4_4:-12283535 None:intergenic
GTTGTCATGGAGTATGTAAA+AGG 0.433503 4_4:+12282742 Msa0670160:three_prime_UTR
GGAAGGAAGGAAAGGACGTC+TGG 0.437410 4_4:+12283617 Msa0670160:three_prime_UTR
CAACTCGACTAAATGGAAAA+CGG 0.439456 4_4:-12283670 None:intergenic
AGCTTGTGAAGGAGAATGTT+AGG 0.440102 4_4:+12283727 Msa0670160:three_prime_UTR
TCATGTTGTTGAGCTTTATG+AGG 0.440621 4_4:+12282693 Msa0670160:three_prime_UTR
TTATGCAACGATATGAATTA+GGG 0.440883 4_4:+12282506 Msa0670160:three_prime_UTR
CAGGGGTGCCACATGTTGTA+TGG 0.441398 4_4:-12282987 None:intergenic
AACTCGACTAAATGGAAAAC+GGG 0.442606 4_4:-12283669 None:intergenic
ATAGAGATGTATCGGAAAAT+CGG 0.445444 4_4:+12283135 Msa0670160:three_prime_UTR
GTATTTGGGGCTTGTGAGAA+TGG 0.450132 4_4:+12283354 Msa0670160:three_prime_UTR
TTTCAGTGATGAGACTAATC+AGG 0.455139 4_4:+12282665 Msa0670160:three_prime_UTR
CAGATTTCAAGTATCCCAAC+TGG 0.463961 4_4:+12283163 Msa0670160:three_prime_UTR
GAAACCAGAAAATCTTCTGT+TGG 0.464498 4_4:+12282888 Msa0670160:three_prime_UTR
AGCATTGCAGAAAGAGGAAC+AGG 0.468575 4_4:+12283812 Msa0670160:three_prime_UTR
GGAAAGTTCTTGGTTCAAGA+AGG 0.469309 4_4:+12283266 Msa0670160:three_prime_UTR
GAAAGTTCTTGGTTCAAGAA+GGG 0.478280 4_4:+12283267 Msa0670160:three_prime_UTR
GAAGAAATTTGTAATCGTCT+CGG 0.482682 4_4:+12283543 Msa0670160:three_prime_UTR
TGTTGAGCTTTATGAGGTAA+TGG 0.491773 4_4:+12282699 Msa0670160:three_prime_UTR
AAATTCATTAACTAAGAAGT+TGG 0.492930 4_4:-12283870 None:intergenic
AACCAAAATTTACGTTGTCA+TGG 0.493973 4_4:+12282729 Msa0670160:three_prime_UTR
GGATGAAAACGAAAATTTGA+AGG 0.495220 4_4:+12282909 Msa0670160:three_prime_UTR
CACCCCTGCGTATGTCGCTC+CGG 0.499909 4_4:+12283002 Msa0670160:three_prime_UTR
GGACGCTGATGGAGTATTTG+GGG 0.504064 4_4:+12283341 Msa0670160:three_prime_UTR
CGAATTTGATAGAGATGTAT+CGG 0.506429 4_4:+12283127 Msa0670160:three_prime_UTR
CAATGAAACGTAAGCGGGGA+AGG 0.506881 4_4:+12279453 None:intergenic
TCCATCTTGGTGTTTAGTCT+CGG 0.507741 4_4:-12282959 None:intergenic
CGGGGAAGGCTCTACTTGGC+TGG 0.507970 4_4:+12279467 Msa0670160:CDS
TGGTGTCACACCAAAATTCA+GGG 0.508260 4_4:+12282227 Msa0670160:three_prime_UTR
CAAGTCAAAACCTGACGAAA+AGG 0.521893 4_4:-12283433 None:intergenic
TACGCCACAAGACCATATAT+CGG 0.523277 4_4:-12283061 None:intergenic
CAGTACAGCCTCGTTGGCAC+CGG 0.523377 4_4:-12282289 None:intergenic
AATAATATTGTGACATGTTG+TGG 0.523601 4_4:-12279515 None:intergenic
AAGATAGAAGGTTCCAAGGA+AGG 0.523913 4_4:+12283600 Msa0670160:three_prime_UTR
GATGAAGAAGAATGAGGTGG+AGG 0.524745 4_4:-12280736 None:intergenic
CTATTCAACAAGGTATCAAA+AGG 0.526155 4_4:+12282772 Msa0670160:three_prime_UTR
CTTGTCAATGAAACGTAAGC+GGG 0.527031 4_4:+12279448 None:intergenic
CAAAGTTATTGACAAAGAGA+AGG 0.527341 4_4:+12282603 Msa0670160:three_prime_UTR
TTACCGTGCTCAAGTGATTG+AGG 0.527454 4_4:+12282374 Msa0670160:three_prime_UTR
TAAGCGGGGAAGGCTCTACT+TGG 0.528046 4_4:+12279463 Msa0670160:CDS
CTAGCTCCTTTGGACGCTGA+TGG 0.528051 4_4:+12283330 Msa0670160:three_prime_UTR
CTGAAAGTATCGCCTAGCTT+CGG 0.528962 4_4:-12282809 None:intergenic
TTCATTAACTAAGAAGTTGG+TGG 0.529014 4_4:-12283867 None:intergenic
ACATCCGATGCAAACCAGTT+GGG 0.530921 4_4:-12283177 None:intergenic
TACATCCGATGCAAACCAGT+TGG 0.532836 4_4:-12283178 None:intergenic
GACATTGTTTGGAATTGGCA+AGG 0.533982 4_4:+12283762 Msa0670160:three_prime_UTR
TAGAAGGTTCCAAGGAAGGA+AGG 0.537234 4_4:+12283604 Msa0670160:three_prime_UTR
AGCTGAAGCATGCCGAAGCT+AGG 0.540981 4_4:+12282797 Msa0670160:three_prime_UTR
TTGTAAGATTTCTTGAGAAG+CGG 0.541052 4_4:+12282416 Msa0670160:three_prime_UTR
TTGGAGATGATGATTGAAGC+AGG 0.541079 4_4:-12283516 None:intergenic
TCATTATAAGTTCTGATACT+CGG 0.543292 4_4:+12282130 Msa0670160:exon
AAAGTTCTTGGTTCAAGAAG+GGG 0.545093 4_4:+12283268 Msa0670160:three_prime_UTR
AAGGCATTTAAATTATTACA+AGG 0.551526 4_4:-12283399 None:intergenic
ATGATTGAAGATAGCTCAGA+AGG 0.553225 4_4:-12282312 None:intergenic
ACACAAATCATCACAACTCA+TGG 0.554542 4_4:+12280815 Msa0670160:CDS
CACGGTAAAGATATTGACAT+TGG 0.557917 4_4:-12282359 None:intergenic
ACATGGAGCATTGCAGAAAG+AGG 0.564436 4_4:+12283806 Msa0670160:three_prime_UTR
GAGAGCACAGAAGACCCAAA+GGG 0.570917 4_4:-12284045 None:intergenic
CCGGAAGTGATAAACCGAAA+GGG 0.572944 4_4:+12283021 Msa0670160:three_prime_UTR
GTTCAAGATAGAAGGTTCCA+AGG 0.573083 4_4:+12283596 Msa0670160:three_prime_UTR
GCTCCATGTTGCAACTGCTG+TGG 0.577683 4_4:-12283792 None:intergenic
AGAAGGCAGTACAGCCTCGT+TGG 0.584463 4_4:-12282295 None:intergenic
CTAAACATCCAATCTCATCA+AGG 0.585759 4_4:-12282335 None:intergenic
CAACCACAGCAGTTGCAACA+TGG 0.588655 4_4:+12283789 Msa0670160:three_prime_UTR
CGAAAAGGAGATGATATCGA+AGG 0.590821 4_4:-12283418 None:intergenic
GGTTCCAAGGAAGGAAGGAA+AGG 0.591975 4_4:+12283609 Msa0670160:three_prime_UTR
AAAGTCAAACGGTGACACAT+TGG 0.593515 4_4:+12283695 Msa0670160:three_prime_UTR
AGAGAGCACAGAAGACCCAA+AGG 0.600777 4_4:-12284046 None:intergenic
GAAGATGAAGAAGAATGAGG+TGG 0.610827 4_4:-12280739 None:intergenic
GTATCCCAACTGGTTTGCAT+CGG 0.612090 4_4:+12283173 Msa0670160:three_prime_UTR
CAAACAATGTCCTTAAGTGA+AGG 0.612165 4_4:-12283750 None:intergenic
GCCGAGACTAAACACCAAGA+TGG 0.612772 4_4:+12282958 Msa0670160:three_prime_UTR
TGCATGATAGACCTTTGCAA+AGG 0.612821 4_4:-12282548 None:intergenic
TTGTATGGAGTAATCCATCT+TGG 0.613186 4_4:-12282972 None:intergenic
TCCGGAAGTGATAAACCGAA+AGG 0.614848 4_4:+12283020 Msa0670160:three_prime_UTR
GAAGGAAGGAAAGGACGTCT+GGG 0.617468 4_4:+12283618 Msa0670160:three_prime_UTR
CTTCCGGAGCGACATACGCA+GGG 0.621299 4_4:-12283005 None:intergenic
AAAGCCGATATATGGTCTTG+TGG 0.626192 4_4:+12283057 Msa0670160:three_prime_UTR
TTGCAAAGGTCTATCATGCA+AGG 0.628875 4_4:+12282551 Msa0670160:three_prime_UTR
AGGACAAGGAACCTTTGCAA+AGG 0.630604 4_4:+12282537 Msa0670160:three_prime_UTR
TCATAAAGCTCAACAACATG+AGG 0.636821 4_4:-12282691 None:intergenic
GGAGTACCAAAAGCTTGTGA+AGG 0.636958 4_4:+12283716 Msa0670160:three_prime_UTR
ACTTCCGGAGCGACATACGC+AGG 0.640992 4_4:-12283006 None:intergenic
TTAGGGAAATTATTAGGACA+AGG 0.643969 4_4:+12282523 Msa0670160:three_prime_UTR
GTGACATGTTGTGGAACAGA+AGG 0.644908 4_4:-12279506 None:intergenic
AATACTCCATCAGCGTCCAA+AGG 0.649063 4_4:-12283336 None:intergenic
GTTGATTACTGTCATAGTAG+AGG 0.652436 4_4:+12282847 Msa0670160:three_prime_UTR
CCGTGCTCAAGTGATTGAGG+TGG 0.653509 4_4:+12282377 Msa0670160:three_prime_UTR
ATAAACCGAAAGGGATACGA+TGG 0.654426 4_4:+12283030 Msa0670160:three_prime_UTR
AATGAAGATGAAGAAGAATG+AGG 0.658740 4_4:-12280742 None:intergenic
GGGTCAATATAGGTGTCTCG+TGG 0.662377 4_4:+12279538 Msa0670160:CDS
GGATTACTCCATACAACATG+TGG 0.662874 4_4:+12282979 Msa0670160:three_prime_UTR
TGGATCCGAATCCAAAGACA+AGG 0.665065 4_4:+12283223 Msa0670160:three_prime_UTR
ACTTGTCAATGAAACGTAAG+CGG 0.667405 4_4:+12279447 None:intergenic
CCACCTCAATCACTTGAGCA+CGG 0.680086 4_4:-12282377 None:intergenic
AGGTGGTGAGCTATTCAACA+AGG 0.685647 4_4:+12282762 Msa0670160:three_prime_UTR
GATGTATCGGAAAATCGGCA+AGG 0.686504 4_4:+12283140 Msa0670160:three_prime_UTR
TTGTCAATGAAACGTAAGCG+GGG 0.715748 4_4:+12279449 None:intergenic
CAATTGTCATATGATAACTG+TGG 0.722823 4_4:+12283970 Msa0670160:three_prime_UTR
TTCCGGAGCGACATACGCAG+GGG 0.725599 4_4:-12283004 None:intergenic
TTACGAGAAATGGAACGAAG+CGG 0.737200 4_4:+12282475 Msa0670160:three_prime_UTR
GTCATGGAGTATGTAAAAGG+TGG 0.739728 4_4:+12282745 Msa0670160:three_prime_UTR
AAGAACGAAAGACAGAAGTG+CGG 0.740422 4_4:+12283478 Msa0670160:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTACTTACTTTTTTTAT+GGG - chr4_4:12280040-12280059 None:intergenic 10.0%
!!! TTATTTACTTACTTTTTTTA+TGG - chr4_4:12280041-12280060 None:intergenic 10.0%
!! AAGTTTAAATTAAAAACTTT+AGG + chr4_4:12280061-12280080 Msa0670160:intron 10.0%
!!! AAATTTTGGTTATTTTTATT+AGG + chr4_4:12280096-12280115 Msa0670160:intron 10.0%
!!! AATTTTGGTTATTTTTATTA+GGG + chr4_4:12280097-12280116 Msa0670160:intron 10.0%
!! ATAAATTACATAAAATCTTA+TGG - chr4_4:12282047-12282066 None:intergenic 10.0%
!!! TATTTACTTACTTTTTTTAT+GGG - chr4_4:12280040-12280059 None:intergenic 10.0%
!!! TTATTTACTTACTTTTTTTA+TGG - chr4_4:12280041-12280060 None:intergenic 10.0%
!! AAGTTTAAATTAAAAACTTT+AGG + chr4_4:12280061-12280080 Msa0670160:intron 10.0%
!!! AAATTTTGGTTATTTTTATT+AGG + chr4_4:12280096-12280115 Msa0670160:intron 10.0%
!!! AATTTTGGTTATTTTTATTA+GGG + chr4_4:12280097-12280116 Msa0670160:intron 10.0%
!! ATAAATTACATAAAATCTTA+TGG - chr4_4:12282047-12282066 None:intergenic 10.0%
!!! TCTAATAATTTTAGTTTTGT+TGG - chr4_4:12279935-12279954 None:intergenic 15.0%
!!! TAAAAACTTTAGGTTTTTTT+AGG + chr4_4:12280071-12280090 Msa0670160:intron 15.0%
!!! AAAAACTTTAGGTTTTTTTA+GGG + chr4_4:12280072-12280091 Msa0670160:intron 15.0%
!! ATTTAGTGTTATATTGTATT+GGG - chr4_4:12280397-12280416 None:intergenic 15.0%
!! TATTTAGTGTTATATTGTAT+TGG - chr4_4:12280398-12280417 None:intergenic 15.0%
!! AAGAAAAATGTATAGATAAA+GGG - chr4_4:12280462-12280481 None:intergenic 15.0%
!! TAAGAAAAATGTATAGATAA+AGG - chr4_4:12280463-12280482 None:intergenic 15.0%
!!! AAGAAAAGTGTATAAATAAA+GGG - chr4_4:12280574-12280593 None:intergenic 15.0%
!!! TAAGAAAAGTGTATAAATAA+AGG - chr4_4:12280575-12280594 None:intergenic 15.0%
!!! ATAATTCCGTATAATTTTAT+GGG - chr4_4:12281199-12281218 None:intergenic 15.0%
!!! TTTTATGTAATTTATTTCAC+AGG + chr4_4:12282052-12282071 Msa0670160:intron 15.0%
!!! TTTTTTTCGTTATTATTCTA+CGG + chr4_4:12282180-12282199 Msa0670160:three_prime_UTR 15.0%
!! ATGAATTTATATCCTTAATT+TGG + chr4_4:12283885-12283904 Msa0670160:three_prime_UTR 15.0%
!!! TCTAATAATTTTAGTTTTGT+TGG - chr4_4:12279935-12279954 None:intergenic 15.0%
!!! TAAAAACTTTAGGTTTTTTT+AGG + chr4_4:12280071-12280090 Msa0670160:intron 15.0%
!!! AAAAACTTTAGGTTTTTTTA+GGG + chr4_4:12280072-12280091 Msa0670160:intron 15.0%
!! ATTTAGTGTTATATTGTATT+GGG - chr4_4:12280397-12280416 None:intergenic 15.0%
!! TATTTAGTGTTATATTGTAT+TGG - chr4_4:12280398-12280417 None:intergenic 15.0%
!! AAGAAAAATGTATAGATAAA+GGG - chr4_4:12280462-12280481 None:intergenic 15.0%
!! TAAGAAAAATGTATAGATAA+AGG - chr4_4:12280463-12280482 None:intergenic 15.0%
!!! AAGAAAAGTGTATAAATAAA+GGG - chr4_4:12280574-12280593 None:intergenic 15.0%
!!! TAAGAAAAGTGTATAAATAA+AGG - chr4_4:12280575-12280594 None:intergenic 15.0%
!!! ATAATTCCGTATAATTTTAT+GGG - chr4_4:12281199-12281218 None:intergenic 15.0%
!!! TTTTATGTAATTTATTTCAC+AGG + chr4_4:12282052-12282071 Msa0670160:intron 15.0%
!!! TTTTTTTCGTTATTATTCTA+CGG + chr4_4:12282180-12282199 Msa0670160:three_prime_UTR 15.0%
!! ATGAATTTATATCCTTAATT+TGG + chr4_4:12283885-12283904 Msa0670160:three_prime_UTR 15.0%
!!! TAACATTTGATTTGATTGAT+TGG + chr4_4:12279616-12279635 Msa0670160:intron 20.0%
!! TCTAGATAGAAATATAACAA+CGG - chr4_4:12279662-12279681 None:intergenic 20.0%
!! ATGTCATCATAAAAACAATT+AGG - chr4_4:12279723-12279742 None:intergenic 20.0%
!!! TTTTTATAGCTCAATTAGTA+AGG + chr4_4:12279854-12279873 Msa0670160:intron 20.0%
!!! ATTAGAGTAAACATTTTTCA+TGG + chr4_4:12279949-12279968 Msa0670160:intron 20.0%
!!! AAAACTTTAGGTTTTTTTAG+GGG + chr4_4:12280073-12280092 Msa0670160:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+AGG - chr4_4:12280208-12280227 None:intergenic 20.0%
!!! TGAAATGAATCAGTTATTTT+GGG - chr4_4:12280230-12280249 None:intergenic 20.0%
!!! TTGAAATGAATCAGTTATTT+TGG - chr4_4:12280231-12280250 None:intergenic 20.0%
!! ATTTAGTGTTATGTTGTATT+GGG - chr4_4:12280277-12280296 None:intergenic 20.0%
!! TATTTAGTGTTATGTTGTAT+TGG - chr4_4:12280278-12280297 None:intergenic 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG - chr4_4:12280208-12280227 None:intergenic 20.0%
!!! TGAAATGAGTCAATTATTTT+GGG - chr4_4:12280350-12280369 None:intergenic 20.0%
!!! TTGAAATGAGTCAATTATTT+TGG - chr4_4:12280351-12280370 None:intergenic 20.0%
!! AAAGTGGAATATATTGTATT+GGG - chr4_4:12280438-12280457 None:intergenic 20.0%
!! AGAAAAATGTATAGATAAAG+GGG - chr4_4:12280461-12280480 None:intergenic 20.0%
!!! AGAAAAGTGTATAAATAAAG+GGG - chr4_4:12280573-12280592 None:intergenic 20.0%
!! GAATATTCTCTAATATTCTT+TGG + chr4_4:12280658-12280677 Msa0670160:intron 20.0%
!!! CATAATTCCGTATAATTTTA+TGG - chr4_4:12281200-12281219 None:intergenic 20.0%
!!! TGATTTTCTCAAATTATTAG+CGG + chr4_4:12281220-12281239 Msa0670160:intron 20.0%
!! ATATTCTTTATCTTACAAGT+TGG + chr4_4:12281336-12281355 Msa0670160:intron 20.0%
!!! ATATAGCAATTGTGTAATTT+TGG + chr4_4:12281720-12281739 Msa0670160:intron 20.0%
!! TTTACAAATTCTGTATTCTT+TGG + chr4_4:12282207-12282226 Msa0670160:three_prime_UTR 20.0%
!! TATGAATTAGGGAAATTATT+AGG + chr4_4:12282517-12282536 Msa0670160:three_prime_UTR 20.0%
!!! AAGGCATTTAAATTATTACA+AGG - chr4_4:12283402-12283421 None:intergenic 20.0%
!! ATTACAAATTTCTTCAAACT+TGG - chr4_4:12283538-12283557 None:intergenic 20.0%
!! AAATTCATTAACTAAGAAGT+TGG - chr4_4:12283873-12283892 None:intergenic 20.0%
!!! TAACATTTGATTTGATTGAT+TGG + chr4_4:12279616-12279635 Msa0670160:intron 20.0%
!! TCTAGATAGAAATATAACAA+CGG - chr4_4:12279662-12279681 None:intergenic 20.0%
!! ATGTCATCATAAAAACAATT+AGG - chr4_4:12279723-12279742 None:intergenic 20.0%
!!! TTTTTATAGCTCAATTAGTA+AGG + chr4_4:12279854-12279873 Msa0670160:intron 20.0%
!!! ATTAGAGTAAACATTTTTCA+TGG + chr4_4:12279949-12279968 Msa0670160:intron 20.0%
!!! AAAACTTTAGGTTTTTTTAG+GGG + chr4_4:12280073-12280092 Msa0670160:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+AGG - chr4_4:12280208-12280227 None:intergenic 20.0%
!!! TGAAATGAATCAGTTATTTT+GGG - chr4_4:12280230-12280249 None:intergenic 20.0%
!!! TTGAAATGAATCAGTTATTT+TGG - chr4_4:12280231-12280250 None:intergenic 20.0%
!! ATTTAGTGTTATGTTGTATT+GGG - chr4_4:12280277-12280296 None:intergenic 20.0%
!! TATTTAGTGTTATGTTGTAT+TGG - chr4_4:12280278-12280297 None:intergenic 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG - chr4_4:12280208-12280227 None:intergenic 20.0%
!!! TGAAATGAGTCAATTATTTT+GGG - chr4_4:12280350-12280369 None:intergenic 20.0%
!!! TTGAAATGAGTCAATTATTT+TGG - chr4_4:12280351-12280370 None:intergenic 20.0%
!! AAAGTGGAATATATTGTATT+GGG - chr4_4:12280438-12280457 None:intergenic 20.0%
!! AGAAAAATGTATAGATAAAG+GGG - chr4_4:12280461-12280480 None:intergenic 20.0%
!!! AGAAAAGTGTATAAATAAAG+GGG - chr4_4:12280573-12280592 None:intergenic 20.0%
!! GAATATTCTCTAATATTCTT+TGG + chr4_4:12280658-12280677 Msa0670160:intron 20.0%
!!! CATAATTCCGTATAATTTTA+TGG - chr4_4:12281200-12281219 None:intergenic 20.0%
!!! TGATTTTCTCAAATTATTAG+CGG + chr4_4:12281220-12281239 Msa0670160:intron 20.0%
!! ATATTCTTTATCTTACAAGT+TGG + chr4_4:12281336-12281355 Msa0670160:intron 20.0%
!!! ATATAGCAATTGTGTAATTT+TGG + chr4_4:12281720-12281739 Msa0670160:intron 20.0%
!! TTTACAAATTCTGTATTCTT+TGG + chr4_4:12282207-12282226 Msa0670160:three_prime_UTR 20.0%
!! TATGAATTAGGGAAATTATT+AGG + chr4_4:12282517-12282536 Msa0670160:three_prime_UTR 20.0%
!!! AAGGCATTTAAATTATTACA+AGG - chr4_4:12283402-12283421 None:intergenic 20.0%
!! ATTACAAATTTCTTCAAACT+TGG - chr4_4:12283538-12283557 None:intergenic 20.0%
!! AAATTCATTAACTAAGAAGT+TGG - chr4_4:12283873-12283892 None:intergenic 20.0%
! AATAATATTGTGACATGTTG+TGG - chr4_4:12279518-12279537 None:intergenic 25.0%
! ACAACATGTCACAATATTAT+TGG + chr4_4:12279517-12279536 Msa0670160:CDS 25.0%
! CAACATGTCACAATATTATT+GGG + chr4_4:12279518-12279537 Msa0670160:CDS 25.0%
! CAATATTATTGGGTCAATAT+AGG + chr4_4:12279528-12279547 Msa0670160:CDS 25.0%
! TCATAAAAACAATTAGGCAT+GGG - chr4_4:12279717-12279736 None:intergenic 25.0%
! ATCATAAAAACAATTAGGCA+TGG - chr4_4:12279718-12279737 None:intergenic 25.0%
!!! TTTAGTTTTGTTGGTTCATA+TGG - chr4_4:12279926-12279945 None:intergenic 25.0%
! GAAAATCTTGAATTCAAACT+TGG - chr4_4:12279979-12279998 None:intergenic 25.0%
! ATCATAATGACGTAATGATT+TGG + chr4_4:12280144-12280163 Msa0670160:intron 25.0%
! TCATAATGACGTAATGATTT+GGG + chr4_4:12280145-12280164 Msa0670160:intron 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG - chr4_4:12280209-12280228 None:intergenic 25.0%
! GAAAGTGGAATATATTGTAT+TGG - chr4_4:12280439-12280458 None:intergenic 25.0%
! TGTATAAATAAAGGGGAAAA+TGG - chr4_4:12280566-12280585 None:intergenic 25.0%
!! TTTTTGTGTTCTCTGATTTT+GGG - chr4_4:12280782-12280801 None:intergenic 25.0%
!! ATTTTTGTGTTCTCTGATTT+TGG - chr4_4:12280783-12280802 None:intergenic 25.0%
! TCTGATACCATGTTAAAATT+TGG - chr4_4:12281388-12281407 None:intergenic 25.0%
! CTGAAAAATATATGATGAGT+GGG + chr4_4:12281520-12281539 Msa0670160:intron 25.0%
! TCTTGCAATGAATCAAATTT+GGG - chr4_4:12281596-12281615 None:intergenic 25.0%
! TTCTTGCAATGAATCAAATT+TGG - chr4_4:12281597-12281616 None:intergenic 25.0%
!! TTTGAGTTTCAAATCCAAAA+TGG - chr4_4:12281632-12281651 None:intergenic 25.0%
! GAGAAGAAGTCATAATAATA+AGG + chr4_4:12281674-12281693 Msa0670160:intron 25.0%
!! TCATTATAAGTTCTGATACT+CGG + chr4_4:12282130-12282149 Msa0670160:exon 25.0%
! ATTATGCAACGATATGAATT+AGG + chr4_4:12282505-12282524 Msa0670160:three_prime_UTR 25.0%
! TTATGCAACGATATGAATTA+GGG + chr4_4:12282506-12282525 Msa0670160:three_prime_UTR 25.0%
! CAGATTGTTGTCAAAAATAT+TGG + chr4_4:12283203-12283222 Msa0670160:three_prime_UTR 25.0%
! GATATCAATTGCCAAAATTA+TGG + chr4_4:12283245-12283264 Msa0670160:three_prime_UTR 25.0%
! CTAAAAGTGAAGAAAAAAGA+TGG + chr4_4:12283567-12283586 Msa0670160:three_prime_UTR 25.0%
! ATCATACAGAAACCAAATTA+AGG - chr4_4:12283900-12283919 None:intergenic 25.0%
! AATAATATTGTGACATGTTG+TGG - chr4_4:12279518-12279537 None:intergenic 25.0%
! ACAACATGTCACAATATTAT+TGG + chr4_4:12279517-12279536 Msa0670160:CDS 25.0%
! CAACATGTCACAATATTATT+GGG + chr4_4:12279518-12279537 Msa0670160:CDS 25.0%
! CAATATTATTGGGTCAATAT+AGG + chr4_4:12279528-12279547 Msa0670160:CDS 25.0%
! TCATAAAAACAATTAGGCAT+GGG - chr4_4:12279717-12279736 None:intergenic 25.0%
! ATCATAAAAACAATTAGGCA+TGG - chr4_4:12279718-12279737 None:intergenic 25.0%
!!! TTTAGTTTTGTTGGTTCATA+TGG - chr4_4:12279926-12279945 None:intergenic 25.0%
! GAAAATCTTGAATTCAAACT+TGG - chr4_4:12279979-12279998 None:intergenic 25.0%
! ATCATAATGACGTAATGATT+TGG + chr4_4:12280144-12280163 Msa0670160:intron 25.0%
! TCATAATGACGTAATGATTT+GGG + chr4_4:12280145-12280164 Msa0670160:intron 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG - chr4_4:12280209-12280228 None:intergenic 25.0%
! GAAAGTGGAATATATTGTAT+TGG - chr4_4:12280439-12280458 None:intergenic 25.0%
! TGTATAAATAAAGGGGAAAA+TGG - chr4_4:12280566-12280585 None:intergenic 25.0%
!! TTTTTGTGTTCTCTGATTTT+GGG - chr4_4:12280782-12280801 None:intergenic 25.0%
!! ATTTTTGTGTTCTCTGATTT+TGG - chr4_4:12280783-12280802 None:intergenic 25.0%
! TCTGATACCATGTTAAAATT+TGG - chr4_4:12281388-12281407 None:intergenic 25.0%
! CTGAAAAATATATGATGAGT+GGG + chr4_4:12281520-12281539 Msa0670160:intron 25.0%
! TCTTGCAATGAATCAAATTT+GGG - chr4_4:12281596-12281615 None:intergenic 25.0%
! TTCTTGCAATGAATCAAATT+TGG - chr4_4:12281597-12281616 None:intergenic 25.0%
!! TTTGAGTTTCAAATCCAAAA+TGG - chr4_4:12281632-12281651 None:intergenic 25.0%
! GAGAAGAAGTCATAATAATA+AGG + chr4_4:12281674-12281693 Msa0670160:intron 25.0%
!! TCATTATAAGTTCTGATACT+CGG + chr4_4:12282130-12282149 Msa0670160:exon 25.0%
! ATTATGCAACGATATGAATT+AGG + chr4_4:12282505-12282524 Msa0670160:three_prime_UTR 25.0%
! TTATGCAACGATATGAATTA+GGG + chr4_4:12282506-12282525 Msa0670160:three_prime_UTR 25.0%
! CAGATTGTTGTCAAAAATAT+TGG + chr4_4:12283203-12283222 Msa0670160:three_prime_UTR 25.0%
! GATATCAATTGCCAAAATTA+TGG + chr4_4:12283245-12283264 Msa0670160:three_prime_UTR 25.0%
! CTAAAAGTGAAGAAAAAAGA+TGG + chr4_4:12283567-12283586 Msa0670160:three_prime_UTR 25.0%
! ATCATACAGAAACCAAATTA+AGG - chr4_4:12283900-12283919 None:intergenic 25.0%
AACAGCTTACTAGCATTATT+AGG - chr4_4:12279756-12279775 None:intergenic 30.0%
!! CTAGTAAGCTGTTTTATGAT+TGG + chr4_4:12279763-12279782 Msa0670160:intron 30.0%
!!! GGTTTTTTTAGGGGAAATTT+TGG + chr4_4:12280082-12280101 Msa0670160:intron 30.0%
CATAATGACGTAATGATTTG+GGG + chr4_4:12280146-12280165 Msa0670160:intron 30.0%
! ATAATGACGTAATGATTTGG+GGG + chr4_4:12280147-12280166 Msa0670160:intron 30.0%
AGAAAATAGGTCAGTTATTC+CGG - chr4_4:12280195-12280214 None:intergenic 30.0%
AATGAAGATGAAGAAGAATG+AGG - chr4_4:12280745-12280764 None:intergenic 30.0%
! TTTTGTGTTCTCTGATTTTG+GGG - chr4_4:12280781-12280800 None:intergenic 30.0%
! TTGATTCAAGTTTGTATCTG+AGG + chr4_4:12280951-12280970 Msa0670160:intron 30.0%
! TTCCGTATAATTTTATGGGT+CGG - chr4_4:12281195-12281214 None:intergenic 30.0%
! ATCTCTCGCTTATAATTTTC+AGG - chr4_4:12281318-12281337 None:intergenic 30.0%
!! GGTTTTGTAGAATTGAGTTA+TGG + chr4_4:12281357-12281376 Msa0670160:intron 30.0%
!! GGTCTATCCAAATTTTAACA+TGG + chr4_4:12281378-12281397 Msa0670160:intron 30.0%
! CCACTCATCATATATTTTTC+AGG - chr4_4:12281522-12281541 None:intergenic 30.0%
CCTGAAAAATATATGATGAG+TGG + chr4_4:12281519-12281538 Msa0670160:intron 30.0%
!! ACCTTACAAATCGATTTTGT+AGG + chr4_4:12281554-12281573 Msa0670160:intron 30.0%
!! CCTTACAAATCGATTTTGTA+GGG + chr4_4:12281555-12281574 Msa0670160:intron 30.0%
! CAATGAATCAAATTTGGGTT+TGG - chr4_4:12281591-12281610 None:intergenic 30.0%
! ATAAAACGGTCTCTGATTTT+AGG + chr4_4:12281796-12281815 Msa0670160:intron 30.0%
!!! TCTCTGATTTTAGGTTGTTT+TGG + chr4_4:12281805-12281824 Msa0670160:intron 30.0%
! ATTTTGCTTGTCTTTCTTTC+AGG + chr4_4:12282099-12282118 Msa0670160:intron 30.0%
TTAAAAGATAAACGAGTTGC+TGG + chr4_4:12282157-12282176 Msa0670160:three_prime_UTR 30.0%
! CTAGTTAAAAACTCTTTTGC+CGG + chr4_4:12282270-12282289 Msa0670160:three_prime_UTR 30.0%
TTGTAAGATTTCTTGAGAAG+CGG + chr4_4:12282416-12282435 Msa0670160:three_prime_UTR 30.0%
TTAGGGAAATTATTAGGACA+AGG + chr4_4:12282523-12282542 Msa0670160:three_prime_UTR 30.0%
CTCTTTGTCAATAACTTTGA+TGG - chr4_4:12282602-12282621 None:intergenic 30.0%
CAAAGTTATTGACAAAGAGA+AGG + chr4_4:12282603-12282622 Msa0670160:three_prime_UTR 30.0%
AACCAAAATTTACGTTGTCA+TGG + chr4_4:12282729-12282748 Msa0670160:three_prime_UTR 30.0%
! CTATTCAACAAGGTATCAAA+AGG + chr4_4:12282772-12282791 Msa0670160:three_prime_UTR 30.0%
GGATGAAAACGAAAATTTGA+AGG + chr4_4:12282909-12282928 Msa0670160:three_prime_UTR 30.0%
AATTTGAAGGTCTCAGATTT+CGG + chr4_4:12282922-12282941 Msa0670160:three_prime_UTR 30.0%
CGTAATCTTGTATGTTCTAT+TGG + chr4_4:12283080-12283099 Msa0670160:three_prime_UTR 30.0%
ATCAAATTCGGATCTCTAAA+TGG - chr4_4:12283117-12283136 None:intergenic 30.0%
CGATACATCTCTATCAAATT+CGG - chr4_4:12283129-12283148 None:intergenic 30.0%
CGAATTTGATAGAGATGTAT+CGG + chr4_4:12283127-12283146 Msa0670160:three_prime_UTR 30.0%
ATAGAGATGTATCGGAAAAT+CGG + chr4_4:12283135-12283154 Msa0670160:three_prime_UTR 30.0%
! CCAAGAACTTTCCATAATTT+TGG - chr4_4:12283259-12283278 None:intergenic 30.0%
CCAAAATTATGGAAAGTTCT+TGG + chr4_4:12283256-12283275 Msa0670160:three_prime_UTR 30.0%
GAAGAAATTTGTAATCGTCT+CGG + chr4_4:12283543-12283562 Msa0670160:three_prime_UTR 30.0%
AAGAAATTTGTAATCGTCTC+GGG + chr4_4:12283544-12283563 Msa0670160:three_prime_UTR 30.0%
AAAGTGAAGAAAAAAGATGG+AGG + chr4_4:12283570-12283589 Msa0670160:three_prime_UTR 30.0%
!!! ACTTTTTCAACTCGACTAAA+TGG - chr4_4:12283680-12283699 None:intergenic 30.0%
! TTAAGGACATTGTTTGGAAT+TGG + chr4_4:12283757-12283776 Msa0670160:three_prime_UTR 30.0%
TTCATTAACTAAGAAGTTGG+TGG - chr4_4:12283870-12283889 None:intergenic 30.0%
! ATGCTTTTGCATTATGTTCT+TGG + chr4_4:12283922-12283941 Msa0670160:three_prime_UTR 30.0%
CAATTGTCATATGATAACTG+TGG + chr4_4:12283970-12283989 Msa0670160:three_prime_UTR 30.0%
TGTGTACTTAATCGCTTATT+TGG + chr4_4:12284022-12284041 Msa0670160:three_prime_UTR 30.0%
AACAGCTTACTAGCATTATT+AGG - chr4_4:12279756-12279775 None:intergenic 30.0%
!! CTAGTAAGCTGTTTTATGAT+TGG + chr4_4:12279763-12279782 Msa0670160:intron 30.0%
!!! GGTTTTTTTAGGGGAAATTT+TGG + chr4_4:12280082-12280101 Msa0670160:intron 30.0%
CATAATGACGTAATGATTTG+GGG + chr4_4:12280146-12280165 Msa0670160:intron 30.0%
! ATAATGACGTAATGATTTGG+GGG + chr4_4:12280147-12280166 Msa0670160:intron 30.0%
AGAAAATAGGTCAGTTATTC+CGG - chr4_4:12280195-12280214 None:intergenic 30.0%
AATGAAGATGAAGAAGAATG+AGG - chr4_4:12280745-12280764 None:intergenic 30.0%
! TTTTGTGTTCTCTGATTTTG+GGG - chr4_4:12280781-12280800 None:intergenic 30.0%
! TTGATTCAAGTTTGTATCTG+AGG + chr4_4:12280951-12280970 Msa0670160:intron 30.0%
! TTCCGTATAATTTTATGGGT+CGG - chr4_4:12281195-12281214 None:intergenic 30.0%
! ATCTCTCGCTTATAATTTTC+AGG - chr4_4:12281318-12281337 None:intergenic 30.0%
!! GGTTTTGTAGAATTGAGTTA+TGG + chr4_4:12281357-12281376 Msa0670160:intron 30.0%
!! GGTCTATCCAAATTTTAACA+TGG + chr4_4:12281378-12281397 Msa0670160:intron 30.0%
! CCACTCATCATATATTTTTC+AGG - chr4_4:12281522-12281541 None:intergenic 30.0%
CCTGAAAAATATATGATGAG+TGG + chr4_4:12281519-12281538 Msa0670160:intron 30.0%
!! ACCTTACAAATCGATTTTGT+AGG + chr4_4:12281554-12281573 Msa0670160:intron 30.0%
!! CCTTACAAATCGATTTTGTA+GGG + chr4_4:12281555-12281574 Msa0670160:intron 30.0%
! CAATGAATCAAATTTGGGTT+TGG - chr4_4:12281591-12281610 None:intergenic 30.0%
! ATAAAACGGTCTCTGATTTT+AGG + chr4_4:12281796-12281815 Msa0670160:intron 30.0%
!!! TCTCTGATTTTAGGTTGTTT+TGG + chr4_4:12281805-12281824 Msa0670160:intron 30.0%
! ATTTTGCTTGTCTTTCTTTC+AGG + chr4_4:12282099-12282118 Msa0670160:intron 30.0%
TTAAAAGATAAACGAGTTGC+TGG + chr4_4:12282157-12282176 Msa0670160:three_prime_UTR 30.0%
! CTAGTTAAAAACTCTTTTGC+CGG + chr4_4:12282270-12282289 Msa0670160:three_prime_UTR 30.0%
TTGTAAGATTTCTTGAGAAG+CGG + chr4_4:12282416-12282435 Msa0670160:three_prime_UTR 30.0%
TTAGGGAAATTATTAGGACA+AGG + chr4_4:12282523-12282542 Msa0670160:three_prime_UTR 30.0%
CTCTTTGTCAATAACTTTGA+TGG - chr4_4:12282602-12282621 None:intergenic 30.0%
CAAAGTTATTGACAAAGAGA+AGG + chr4_4:12282603-12282622 Msa0670160:three_prime_UTR 30.0%
AACCAAAATTTACGTTGTCA+TGG + chr4_4:12282729-12282748 Msa0670160:three_prime_UTR 30.0%
! CTATTCAACAAGGTATCAAA+AGG + chr4_4:12282772-12282791 Msa0670160:three_prime_UTR 30.0%
GGATGAAAACGAAAATTTGA+AGG + chr4_4:12282909-12282928 Msa0670160:three_prime_UTR 30.0%
AATTTGAAGGTCTCAGATTT+CGG + chr4_4:12282922-12282941 Msa0670160:three_prime_UTR 30.0%
CGTAATCTTGTATGTTCTAT+TGG + chr4_4:12283080-12283099 Msa0670160:three_prime_UTR 30.0%
ATCAAATTCGGATCTCTAAA+TGG - chr4_4:12283117-12283136 None:intergenic 30.0%
CGATACATCTCTATCAAATT+CGG - chr4_4:12283129-12283148 None:intergenic 30.0%
CGAATTTGATAGAGATGTAT+CGG + chr4_4:12283127-12283146 Msa0670160:three_prime_UTR 30.0%
ATAGAGATGTATCGGAAAAT+CGG + chr4_4:12283135-12283154 Msa0670160:three_prime_UTR 30.0%
! CCAAGAACTTTCCATAATTT+TGG - chr4_4:12283259-12283278 None:intergenic 30.0%
CCAAAATTATGGAAAGTTCT+TGG + chr4_4:12283256-12283275 Msa0670160:three_prime_UTR 30.0%
GAAGAAATTTGTAATCGTCT+CGG + chr4_4:12283543-12283562 Msa0670160:three_prime_UTR 30.0%
AAGAAATTTGTAATCGTCTC+GGG + chr4_4:12283544-12283563 Msa0670160:three_prime_UTR 30.0%
AAAGTGAAGAAAAAAGATGG+AGG + chr4_4:12283570-12283589 Msa0670160:three_prime_UTR 30.0%
!!! ACTTTTTCAACTCGACTAAA+TGG - chr4_4:12283680-12283699 None:intergenic 30.0%
! TTAAGGACATTGTTTGGAAT+TGG + chr4_4:12283757-12283776 Msa0670160:three_prime_UTR 30.0%
TTCATTAACTAAGAAGTTGG+TGG - chr4_4:12283870-12283889 None:intergenic 30.0%
! ATGCTTTTGCATTATGTTCT+TGG + chr4_4:12283922-12283941 Msa0670160:three_prime_UTR 30.0%
CAATTGTCATATGATAACTG+TGG + chr4_4:12283970-12283989 Msa0670160:three_prime_UTR 30.0%
TGTGTACTTAATCGCTTATT+TGG + chr4_4:12284022-12284041 Msa0670160:three_prime_UTR 30.0%
AAAACAATTAGGCATGGGTT+TGG - chr4_4:12279712-12279731 None:intergenic 35.0%
GAAAATAGGTCAGTTATTCC+GGG - chr4_4:12280194-12280213 None:intergenic 35.0%
TGTATAGATAAAGGGGAAAG+TGG - chr4_4:12280454-12280473 None:intergenic 35.0%
AATAAGTGTGAAATGAGCCA+AGG + chr4_4:12280482-12280501 Msa0670160:intron 35.0%
ATAAGTGTGAAATGAGCCAA+GGG + chr4_4:12280483-12280502 Msa0670160:intron 35.0%
TCTGTGTGAAAAACCAAAGT+AGG + chr4_4:12280596-12280615 Msa0670160:intron 35.0%
CCAAAGTAGGTCAATTAAAC+CGG + chr4_4:12280609-12280628 Msa0670160:intron 35.0%
CAAAGTAGGTCAATTAAACC+GGG + chr4_4:12280610-12280629 Msa0670160:intron 35.0%
ACACAAATCATCACAACTCA+TGG + chr4_4:12280815-12280834 Msa0670160:CDS 35.0%
! CTCATGGCAAATCTTTTGTA+AGG + chr4_4:12280831-12280850 Msa0670160:CDS 35.0%
CTCAGATTAAGTGTATGTGT+CGG + chr4_4:12281139-12281158 Msa0670160:intron 35.0%
CACCGACCCATAAAATTATA+CGG + chr4_4:12281190-12281209 Msa0670160:intron 35.0%
TCTCAAATTATTAGCGGTGT+CGG + chr4_4:12281226-12281245 Msa0670160:intron 35.0%
!! CCCTACAAAATCGATTTGTA+AGG - chr4_4:12281558-12281577 None:intergenic 35.0%
TCAAATCCAAAATGGCGAAA+TGG - chr4_4:12281624-12281643 None:intergenic 35.0%
CTTCTTCTCTCATGTAACAA+AGG - chr4_4:12281663-12281682 None:intergenic 35.0%
TTCCCACTTCTGCAATAAAA+CGG + chr4_4:12281782-12281801 Msa0670160:intron 35.0%
! TTTCAGCATTCCCTGAATTT+TGG - chr4_4:12282240-12282259 None:intergenic 35.0%
ATGATTGAAGATAGCTCAGA+AGG - chr4_4:12282315-12282334 None:intergenic 35.0%
TCAATCATCCTTGATGAGAT+TGG + chr4_4:12282327-12282346 Msa0670160:three_prime_UTR 35.0%
CTAAACATCCAATCTCATCA+AGG - chr4_4:12282338-12282357 None:intergenic 35.0%
CACGGTAAAGATATTGACAT+TGG - chr4_4:12282362-12282381 None:intergenic 35.0%
!! TGACAAAGAGAAGGTTTTGA+AGG + chr4_4:12282612-12282631 Msa0670160:three_prime_UTR 35.0%
!!! AAAGAGAAGGTTTTGAAGGT+TGG + chr4_4:12282616-12282635 Msa0670160:three_prime_UTR 35.0%
!!! AAGAGAAGGTTTTGAAGGTT+GGG + chr4_4:12282617-12282636 Msa0670160:three_prime_UTR 35.0%
TTTCAGTGATGAGACTAATC+AGG + chr4_4:12282665-12282684 Msa0670160:three_prime_UTR 35.0%
TCATAAAGCTCAACAACATG+AGG - chr4_4:12282694-12282713 None:intergenic 35.0%
! TCATGTTGTTGAGCTTTATG+AGG + chr4_4:12282693-12282712 Msa0670160:three_prime_UTR 35.0%
! TGTTGAGCTTTATGAGGTAA+TGG + chr4_4:12282699-12282718 Msa0670160:three_prime_UTR 35.0%
! CTCCATGACAACGTAAATTT+TGG - chr4_4:12282734-12282753 None:intergenic 35.0%
GTTGTCATGGAGTATGTAAA+AGG + chr4_4:12282742-12282761 Msa0670160:three_prime_UTR 35.0%
GTTGATTACTGTCATAGTAG+AGG + chr4_4:12282847-12282866 Msa0670160:three_prime_UTR 35.0%
GAAACCAGAAAATCTTCTGT+TGG + chr4_4:12282888-12282907 Msa0670160:three_prime_UTR 35.0%
! TCATCCAACAGAAGATTTTC+TGG - chr4_4:12282895-12282914 None:intergenic 35.0%
ATTTGAAGGTCTCAGATTTC+GGG + chr4_4:12282923-12282942 Msa0670160:three_prime_UTR 35.0%
TTGTATGGAGTAATCCATCT+TGG - chr4_4:12282975-12282994 None:intergenic 35.0%
ATGGAACTAAAGCCGATATA+TGG + chr4_4:12283049-12283068 Msa0670160:three_prime_UTR 35.0%
ATCTTGTATGTTCTATTGGC+TGG + chr4_4:12283084-12283103 Msa0670160:three_prime_UTR 35.0%
GATATCCTTGTCTTTGGATT+CGG - chr4_4:12283231-12283250 None:intergenic 35.0%
GCAATTGATATCCTTGTCTT+TGG - chr4_4:12283237-12283256 None:intergenic 35.0%
GAAAGTTCTTGGTTCAAGAA+GGG + chr4_4:12283267-12283286 Msa0670160:three_prime_UTR 35.0%
AAAGTTCTTGGTTCAAGAAG+GGG + chr4_4:12283268-12283287 Msa0670160:three_prime_UTR 35.0%
AACTCGACTAAATGGAAAAC+GGG - chr4_4:12283672-12283691 None:intergenic 35.0%
CAACTCGACTAAATGGAAAA+CGG - chr4_4:12283673-12283692 None:intergenic 35.0%
!! GTCGAGTTGAAAAAGTCAAA+CGG + chr4_4:12283684-12283703 Msa0670160:three_prime_UTR 35.0%
CAAACAATGTCCTTAAGTGA+AGG - chr4_4:12283753-12283772 None:intergenic 35.0%
CTTCACTTAAGGACATTGTT+TGG + chr4_4:12283751-12283770 Msa0670160:three_prime_UTR 35.0%
AAAACAATTAGGCATGGGTT+TGG - chr4_4:12279712-12279731 None:intergenic 35.0%
GAAAATAGGTCAGTTATTCC+GGG - chr4_4:12280194-12280213 None:intergenic 35.0%
TGTATAGATAAAGGGGAAAG+TGG - chr4_4:12280454-12280473 None:intergenic 35.0%
AATAAGTGTGAAATGAGCCA+AGG + chr4_4:12280482-12280501 Msa0670160:intron 35.0%
ATAAGTGTGAAATGAGCCAA+GGG + chr4_4:12280483-12280502 Msa0670160:intron 35.0%
TCTGTGTGAAAAACCAAAGT+AGG + chr4_4:12280596-12280615 Msa0670160:intron 35.0%
CCAAAGTAGGTCAATTAAAC+CGG + chr4_4:12280609-12280628 Msa0670160:intron 35.0%
CAAAGTAGGTCAATTAAACC+GGG + chr4_4:12280610-12280629 Msa0670160:intron 35.0%
ACACAAATCATCACAACTCA+TGG + chr4_4:12280815-12280834 Msa0670160:CDS 35.0%
! CTCATGGCAAATCTTTTGTA+AGG + chr4_4:12280831-12280850 Msa0670160:CDS 35.0%
CTCAGATTAAGTGTATGTGT+CGG + chr4_4:12281139-12281158 Msa0670160:intron 35.0%
CACCGACCCATAAAATTATA+CGG + chr4_4:12281190-12281209 Msa0670160:intron 35.0%
TCTCAAATTATTAGCGGTGT+CGG + chr4_4:12281226-12281245 Msa0670160:intron 35.0%
!! CCCTACAAAATCGATTTGTA+AGG - chr4_4:12281558-12281577 None:intergenic 35.0%
TCAAATCCAAAATGGCGAAA+TGG - chr4_4:12281624-12281643 None:intergenic 35.0%
CTTCTTCTCTCATGTAACAA+AGG - chr4_4:12281663-12281682 None:intergenic 35.0%
TTCCCACTTCTGCAATAAAA+CGG + chr4_4:12281782-12281801 Msa0670160:intron 35.0%
! TTTCAGCATTCCCTGAATTT+TGG - chr4_4:12282240-12282259 None:intergenic 35.0%
ATGATTGAAGATAGCTCAGA+AGG - chr4_4:12282315-12282334 None:intergenic 35.0%
TCAATCATCCTTGATGAGAT+TGG + chr4_4:12282327-12282346 Msa0670160:three_prime_UTR 35.0%
CTAAACATCCAATCTCATCA+AGG - chr4_4:12282338-12282357 None:intergenic 35.0%
CACGGTAAAGATATTGACAT+TGG - chr4_4:12282362-12282381 None:intergenic 35.0%
!! TGACAAAGAGAAGGTTTTGA+AGG + chr4_4:12282612-12282631 Msa0670160:three_prime_UTR 35.0%
!!! AAAGAGAAGGTTTTGAAGGT+TGG + chr4_4:12282616-12282635 Msa0670160:three_prime_UTR 35.0%
!!! AAGAGAAGGTTTTGAAGGTT+GGG + chr4_4:12282617-12282636 Msa0670160:three_prime_UTR 35.0%
TTTCAGTGATGAGACTAATC+AGG + chr4_4:12282665-12282684 Msa0670160:three_prime_UTR 35.0%
TCATAAAGCTCAACAACATG+AGG - chr4_4:12282694-12282713 None:intergenic 35.0%
! TCATGTTGTTGAGCTTTATG+AGG + chr4_4:12282693-12282712 Msa0670160:three_prime_UTR 35.0%
! TGTTGAGCTTTATGAGGTAA+TGG + chr4_4:12282699-12282718 Msa0670160:three_prime_UTR 35.0%
! CTCCATGACAACGTAAATTT+TGG - chr4_4:12282734-12282753 None:intergenic 35.0%
GTTGTCATGGAGTATGTAAA+AGG + chr4_4:12282742-12282761 Msa0670160:three_prime_UTR 35.0%
GTTGATTACTGTCATAGTAG+AGG + chr4_4:12282847-12282866 Msa0670160:three_prime_UTR 35.0%
GAAACCAGAAAATCTTCTGT+TGG + chr4_4:12282888-12282907 Msa0670160:three_prime_UTR 35.0%
! TCATCCAACAGAAGATTTTC+TGG - chr4_4:12282895-12282914 None:intergenic 35.0%
ATTTGAAGGTCTCAGATTTC+GGG + chr4_4:12282923-12282942 Msa0670160:three_prime_UTR 35.0%
TTGTATGGAGTAATCCATCT+TGG - chr4_4:12282975-12282994 None:intergenic 35.0%
ATGGAACTAAAGCCGATATA+TGG + chr4_4:12283049-12283068 Msa0670160:three_prime_UTR 35.0%
ATCTTGTATGTTCTATTGGC+TGG + chr4_4:12283084-12283103 Msa0670160:three_prime_UTR 35.0%
GATATCCTTGTCTTTGGATT+CGG - chr4_4:12283231-12283250 None:intergenic 35.0%
GCAATTGATATCCTTGTCTT+TGG - chr4_4:12283237-12283256 None:intergenic 35.0%
GAAAGTTCTTGGTTCAAGAA+GGG + chr4_4:12283267-12283286 Msa0670160:three_prime_UTR 35.0%
AAAGTTCTTGGTTCAAGAAG+GGG + chr4_4:12283268-12283287 Msa0670160:three_prime_UTR 35.0%
AACTCGACTAAATGGAAAAC+GGG - chr4_4:12283672-12283691 None:intergenic 35.0%
CAACTCGACTAAATGGAAAA+CGG - chr4_4:12283673-12283692 None:intergenic 35.0%
!! GTCGAGTTGAAAAAGTCAAA+CGG + chr4_4:12283684-12283703 Msa0670160:three_prime_UTR 35.0%
CAAACAATGTCCTTAAGTGA+AGG - chr4_4:12283753-12283772 None:intergenic 35.0%
CTTCACTTAAGGACATTGTT+TGG + chr4_4:12283751-12283770 Msa0670160:three_prime_UTR 35.0%
AAATAATACTCCCTCCGTCT+CGG + chr4_4:12280293-12280312 Msa0670160:intron 40.0%
TAAGTGTGAAATGAGCCAAG+GGG + chr4_4:12280484-12280503 Msa0670160:intron 40.0%
AGCCAAGGGGTCAATTAATT+CGG + chr4_4:12280497-12280516 Msa0670160:intron 40.0%
CCGGTTTAATTGACCTACTT+TGG - chr4_4:12280612-12280631 None:intergenic 40.0%
GATGACAACGAAGTTACTGT+TGG - chr4_4:12280691-12280710 None:intergenic 40.0%
GAAGATGAAGAAGAATGAGG+TGG - chr4_4:12280742-12280761 None:intergenic 40.0%
CGACACATACACTTAATCTG+AGG - chr4_4:12281141-12281160 None:intergenic 40.0%
TAACCTATGAAGCACAGATC+CGG - chr4_4:12281269-12281288 None:intergenic 40.0%
CTCATCTTGTGGATCTTGAA+AGG - chr4_4:12281413-12281432 None:intergenic 40.0%
! AAGTCACCATTTCGCCATTT+TGG + chr4_4:12281615-12281634 Msa0670160:intron 40.0%
!! GACCGTTTTATTGCAGAAGT+GGG - chr4_4:12281787-12281806 None:intergenic 40.0%
!! AGACCGTTTTATTGCAGAAG+TGG - chr4_4:12281788-12281807 None:intergenic 40.0%
!! TTGGTGTCACACCAAAATTC+AGG + chr4_4:12282226-12282245 Msa0670160:three_prime_UTR 40.0%
!! TGGTGTCACACCAAAATTCA+GGG + chr4_4:12282227-12282246 Msa0670160:three_prime_UTR 40.0%
CACAACGTTGTTACGAGAAA+TGG + chr4_4:12282465-12282484 Msa0670160:three_prime_UTR 40.0%
TTACGAGAAATGGAACGAAG+CGG + chr4_4:12282475-12282494 Msa0670160:three_prime_UTR 40.0%
TGCATGATAGACCTTTGCAA+AGG - chr4_4:12282551-12282570 None:intergenic 40.0%
TTGCAAAGGTCTATCATGCA+AGG + chr4_4:12282551-12282570 Msa0670160:three_prime_UTR 40.0%
!!! CCACACTCATGTTGTTTTTG+AGG - chr4_4:12282579-12282598 None:intergenic 40.0%
CCTCAAAAACAACATGAGTG+TGG + chr4_4:12282576-12282595 Msa0670160:three_prime_UTR 40.0%
GTCATGGAGTATGTAAAAGG+TGG + chr4_4:12282745-12282764 Msa0670160:three_prime_UTR 40.0%
!! TCCATCTTGGTGTTTAGTCT+CGG - chr4_4:12282962-12282981 None:intergenic 40.0%
GGATTACTCCATACAACATG+TGG + chr4_4:12282979-12282998 Msa0670160:three_prime_UTR 40.0%
ATAAACCGAAAGGGATACGA+TGG + chr4_4:12283030-12283049 Msa0670160:three_prime_UTR 40.0%
TAGTTCCATCGTATCCCTTT+CGG - chr4_4:12283038-12283057 None:intergenic 40.0%
! AAAGCCGATATATGGTCTTG+TGG + chr4_4:12283057-12283076 Msa0670160:three_prime_UTR 40.0%
TACGCCACAAGACCATATAT+CGG - chr4_4:12283064-12283083 None:intergenic 40.0%
! CAGATTTCAAGTATCCCAAC+TGG + chr4_4:12283163-12283182 Msa0670160:three_prime_UTR 40.0%
GGAAAGTTCTTGGTTCAAGA+AGG + chr4_4:12283266-12283285 Msa0670160:three_prime_UTR 40.0%
TTGTCTGTGTCAGGAACAAT+AGG - chr4_4:12283303-12283322 None:intergenic 40.0%
! AGTTCTTTGTTGTCTGTGTC+AGG - chr4_4:12283312-12283331 None:intergenic 40.0%
CAACAAAGAACTAGCTCCTT+TGG + chr4_4:12283320-12283339 Msa0670160:three_prime_UTR 40.0%
CGAAAAGGAGATGATATCGA+AGG - chr4_4:12283421-12283440 None:intergenic 40.0%
! GATATCATCTCCTTTTCGTC+AGG + chr4_4:12283423-12283442 Msa0670160:three_prime_UTR 40.0%
CAAGTCAAAACCTGACGAAA+AGG - chr4_4:12283436-12283455 None:intergenic 40.0%
!! TGACTTGTCTGGTTTGTTTG+AGG + chr4_4:12283449-12283468 Msa0670160:three_prime_UTR 40.0%
AAGAACGAAAGACAGAAGTG+CGG + chr4_4:12283478-12283497 Msa0670160:three_prime_UTR 40.0%
TTGGAGATGATGATTGAAGC+AGG - chr4_4:12283519-12283538 None:intergenic 40.0%
! GGAGGTTTGTTCAAGATAGA+AGG + chr4_4:12283588-12283607 Msa0670160:three_prime_UTR 40.0%
GTTCAAGATAGAAGGTTCCA+AGG + chr4_4:12283596-12283615 Msa0670160:three_prime_UTR 40.0%
AAGATAGAAGGTTCCAAGGA+AGG + chr4_4:12283600-12283619 Msa0670160:three_prime_UTR 40.0%
AAAGTCAAACGGTGACACAT+TGG + chr4_4:12283695-12283714 Msa0670160:three_prime_UTR 40.0%
! CATTCTCCTTCACAAGCTTT+TGG - chr4_4:12283725-12283744 None:intergenic 40.0%
AGCTTGTGAAGGAGAATGTT+AGG + chr4_4:12283727-12283746 Msa0670160:three_prime_UTR 40.0%
GAATGTTAGGCCTTCACTTA+AGG + chr4_4:12283740-12283759 Msa0670160:three_prime_UTR 40.0%
! GACATTGTTTGGAATTGGCA+AGG + chr4_4:12283762-12283781 Msa0670160:three_prime_UTR 40.0%
TAATCGCTTATTTGGCCCTT+TGG + chr4_4:12284030-12284049 Msa0670160:three_prime_UTR 40.0%
AATCGCTTATTTGGCCCTTT+GGG + chr4_4:12284031-12284050 Msa0670160:three_prime_UTR 40.0%
AAATAATACTCCCTCCGTCT+CGG + chr4_4:12280293-12280312 Msa0670160:intron 40.0%
TAAGTGTGAAATGAGCCAAG+GGG + chr4_4:12280484-12280503 Msa0670160:intron 40.0%
AGCCAAGGGGTCAATTAATT+CGG + chr4_4:12280497-12280516 Msa0670160:intron 40.0%
CCGGTTTAATTGACCTACTT+TGG - chr4_4:12280612-12280631 None:intergenic 40.0%
GATGACAACGAAGTTACTGT+TGG - chr4_4:12280691-12280710 None:intergenic 40.0%
GAAGATGAAGAAGAATGAGG+TGG - chr4_4:12280742-12280761 None:intergenic 40.0%
CGACACATACACTTAATCTG+AGG - chr4_4:12281141-12281160 None:intergenic 40.0%
TAACCTATGAAGCACAGATC+CGG - chr4_4:12281269-12281288 None:intergenic 40.0%
CTCATCTTGTGGATCTTGAA+AGG - chr4_4:12281413-12281432 None:intergenic 40.0%
! AAGTCACCATTTCGCCATTT+TGG + chr4_4:12281615-12281634 Msa0670160:intron 40.0%
!! GACCGTTTTATTGCAGAAGT+GGG - chr4_4:12281787-12281806 None:intergenic 40.0%
!! AGACCGTTTTATTGCAGAAG+TGG - chr4_4:12281788-12281807 None:intergenic 40.0%
!! TTGGTGTCACACCAAAATTC+AGG + chr4_4:12282226-12282245 Msa0670160:three_prime_UTR 40.0%
!! TGGTGTCACACCAAAATTCA+GGG + chr4_4:12282227-12282246 Msa0670160:three_prime_UTR 40.0%
CACAACGTTGTTACGAGAAA+TGG + chr4_4:12282465-12282484 Msa0670160:three_prime_UTR 40.0%
TTACGAGAAATGGAACGAAG+CGG + chr4_4:12282475-12282494 Msa0670160:three_prime_UTR 40.0%
TGCATGATAGACCTTTGCAA+AGG - chr4_4:12282551-12282570 None:intergenic 40.0%
TTGCAAAGGTCTATCATGCA+AGG + chr4_4:12282551-12282570 Msa0670160:three_prime_UTR 40.0%
!!! CCACACTCATGTTGTTTTTG+AGG - chr4_4:12282579-12282598 None:intergenic 40.0%
CCTCAAAAACAACATGAGTG+TGG + chr4_4:12282576-12282595 Msa0670160:three_prime_UTR 40.0%
GTCATGGAGTATGTAAAAGG+TGG + chr4_4:12282745-12282764 Msa0670160:three_prime_UTR 40.0%
!! TCCATCTTGGTGTTTAGTCT+CGG - chr4_4:12282962-12282981 None:intergenic 40.0%
GGATTACTCCATACAACATG+TGG + chr4_4:12282979-12282998 Msa0670160:three_prime_UTR 40.0%
ATAAACCGAAAGGGATACGA+TGG + chr4_4:12283030-12283049 Msa0670160:three_prime_UTR 40.0%
TAGTTCCATCGTATCCCTTT+CGG - chr4_4:12283038-12283057 None:intergenic 40.0%
! AAAGCCGATATATGGTCTTG+TGG + chr4_4:12283057-12283076 Msa0670160:three_prime_UTR 40.0%
TACGCCACAAGACCATATAT+CGG - chr4_4:12283064-12283083 None:intergenic 40.0%
! CAGATTTCAAGTATCCCAAC+TGG + chr4_4:12283163-12283182 Msa0670160:three_prime_UTR 40.0%
GGAAAGTTCTTGGTTCAAGA+AGG + chr4_4:12283266-12283285 Msa0670160:three_prime_UTR 40.0%
TTGTCTGTGTCAGGAACAAT+AGG - chr4_4:12283303-12283322 None:intergenic 40.0%
! AGTTCTTTGTTGTCTGTGTC+AGG - chr4_4:12283312-12283331 None:intergenic 40.0%
CAACAAAGAACTAGCTCCTT+TGG + chr4_4:12283320-12283339 Msa0670160:three_prime_UTR 40.0%
CGAAAAGGAGATGATATCGA+AGG - chr4_4:12283421-12283440 None:intergenic 40.0%
! GATATCATCTCCTTTTCGTC+AGG + chr4_4:12283423-12283442 Msa0670160:three_prime_UTR 40.0%
CAAGTCAAAACCTGACGAAA+AGG - chr4_4:12283436-12283455 None:intergenic 40.0%
!! TGACTTGTCTGGTTTGTTTG+AGG + chr4_4:12283449-12283468 Msa0670160:three_prime_UTR 40.0%
AAGAACGAAAGACAGAAGTG+CGG + chr4_4:12283478-12283497 Msa0670160:three_prime_UTR 40.0%
TTGGAGATGATGATTGAAGC+AGG - chr4_4:12283519-12283538 None:intergenic 40.0%
! GGAGGTTTGTTCAAGATAGA+AGG + chr4_4:12283588-12283607 Msa0670160:three_prime_UTR 40.0%
GTTCAAGATAGAAGGTTCCA+AGG + chr4_4:12283596-12283615 Msa0670160:three_prime_UTR 40.0%
AAGATAGAAGGTTCCAAGGA+AGG + chr4_4:12283600-12283619 Msa0670160:three_prime_UTR 40.0%
AAAGTCAAACGGTGACACAT+TGG + chr4_4:12283695-12283714 Msa0670160:three_prime_UTR 40.0%
! CATTCTCCTTCACAAGCTTT+TGG - chr4_4:12283725-12283744 None:intergenic 40.0%
AGCTTGTGAAGGAGAATGTT+AGG + chr4_4:12283727-12283746 Msa0670160:three_prime_UTR 40.0%
GAATGTTAGGCCTTCACTTA+AGG + chr4_4:12283740-12283759 Msa0670160:three_prime_UTR 40.0%
! GACATTGTTTGGAATTGGCA+AGG + chr4_4:12283762-12283781 Msa0670160:three_prime_UTR 40.0%
TAATCGCTTATTTGGCCCTT+TGG + chr4_4:12284030-12284049 Msa0670160:three_prime_UTR 40.0%
AATCGCTTATTTGGCCCTTT+GGG + chr4_4:12284031-12284050 Msa0670160:three_prime_UTR 40.0%
GTGACATGTTGTGGAACAGA+AGG - chr4_4:12279509-12279528 None:intergenic 45.0%
ACAATTAGGCATGGGTTTGG+TGG - chr4_4:12279709-12279728 None:intergenic 45.0%
ATATATTACTCCCTCCGTCC+CGG + chr4_4:12280173-12280192 Msa0670160:intron 45.0%
ATAGGTCAGTTATTCCGGGA+CGG - chr4_4:12280190-12280209 None:intergenic 45.0%
ATGGGTCAGTTATTCCGAGA+CGG - chr4_4:12280310-12280329 None:intergenic 45.0%
GCCAAGGGGTCAATTAATTC+GGG + chr4_4:12280498-12280517 Msa0670160:intron 45.0%
TCCCGAATTAATTGACCCCT+TGG - chr4_4:12280502-12280521 None:intergenic 45.0%
AGGGGTCAATTAATTCGGGA+CGG + chr4_4:12280502-12280521 Msa0670160:intron 45.0%
GTCAATTAATTCGGGACGGA+GGG + chr4_4:12280506-12280525 Msa0670160:intron 45.0%
GTAGGTCAATTAAACCGGGA+CGG + chr4_4:12280614-12280633 Msa0670160:intron 45.0%
GATGAAGAAGAATGAGGTGG+AGG - chr4_4:12280739-12280758 None:intergenic 45.0%
TATCACATCTCAACACGCCA+AGG - chr4_4:12281473-12281492 None:intergenic 45.0%
TTACCGTGCTCAAGTGATTG+AGG + chr4_4:12282374-12282393 Msa0670160:three_prime_UTR 45.0%
AGGACAAGGAACCTTTGCAA+AGG + chr4_4:12282537-12282556 Msa0670160:three_prime_UTR 45.0%
AGGTGGTGAGCTATTCAACA+AGG + chr4_4:12282762-12282781 Msa0670160:three_prime_UTR 45.0%
!! CTGAAAGTATCGCCTAGCTT+CGG - chr4_4:12282812-12282831 None:intergenic 45.0%
TCCGGAAGTGATAAACCGAA+AGG + chr4_4:12283020-12283039 Msa0670160:three_prime_UTR 45.0%
CCCTTTCGGTTTATCACTTC+CGG - chr4_4:12283024-12283043 None:intergenic 45.0%
CCGGAAGTGATAAACCGAAA+GGG + chr4_4:12283021-12283040 Msa0670160:three_prime_UTR 45.0%
GATGTATCGGAAAATCGGCA+AGG + chr4_4:12283140-12283159 Msa0670160:three_prime_UTR 45.0%
!! GTATCCCAACTGGTTTGCAT+CGG + chr4_4:12283173-12283192 Msa0670160:three_prime_UTR 45.0%
ACATCCGATGCAAACCAGTT+GGG - chr4_4:12283180-12283199 None:intergenic 45.0%
TACATCCGATGCAAACCAGT+TGG - chr4_4:12283181-12283200 None:intergenic 45.0%
TGGATCCGAATCCAAAGACA+AGG + chr4_4:12283223-12283242 Msa0670160:three_prime_UTR 45.0%
AATACTCCATCAGCGTCCAA+AGG - chr4_4:12283339-12283358 None:intergenic 45.0%
! TTGGACGCTGATGGAGTATT+TGG + chr4_4:12283339-12283358 Msa0670160:three_prime_UTR 45.0%
! TGGACGCTGATGGAGTATTT+GGG + chr4_4:12283340-12283359 Msa0670160:three_prime_UTR 45.0%
! GTATTTGGGGCTTGTGAGAA+TGG + chr4_4:12283354-12283373 Msa0670160:three_prime_UTR 45.0%
!!! TCGTCAGGTTTTGACTTGTC+TGG + chr4_4:12283438-12283457 Msa0670160:three_prime_UTR 45.0%
TAGAAGGTTCCAAGGAAGGA+AGG + chr4_4:12283604-12283623 Msa0670160:three_prime_UTR 45.0%
! GGAGTACCAAAAGCTTGTGA+AGG + chr4_4:12283716-12283735 Msa0670160:three_prime_UTR 45.0%
!! ACATGGAGCATTGCAGAAAG+AGG + chr4_4:12283806-12283825 Msa0670160:three_prime_UTR 45.0%
AGCATTGCAGAAAGAGGAAC+AGG + chr4_4:12283812-12283831 Msa0670160:three_prime_UTR 45.0%
GTGACATGTTGTGGAACAGA+AGG - chr4_4:12279509-12279528 None:intergenic 45.0%
ACAATTAGGCATGGGTTTGG+TGG - chr4_4:12279709-12279728 None:intergenic 45.0%
ATATATTACTCCCTCCGTCC+CGG + chr4_4:12280173-12280192 Msa0670160:intron 45.0%
ATAGGTCAGTTATTCCGGGA+CGG - chr4_4:12280190-12280209 None:intergenic 45.0%
ATGGGTCAGTTATTCCGAGA+CGG - chr4_4:12280310-12280329 None:intergenic 45.0%
GCCAAGGGGTCAATTAATTC+GGG + chr4_4:12280498-12280517 Msa0670160:intron 45.0%
TCCCGAATTAATTGACCCCT+TGG - chr4_4:12280502-12280521 None:intergenic 45.0%
AGGGGTCAATTAATTCGGGA+CGG + chr4_4:12280502-12280521 Msa0670160:intron 45.0%
GTCAATTAATTCGGGACGGA+GGG + chr4_4:12280506-12280525 Msa0670160:intron 45.0%
GTAGGTCAATTAAACCGGGA+CGG + chr4_4:12280614-12280633 Msa0670160:intron 45.0%
GATGAAGAAGAATGAGGTGG+AGG - chr4_4:12280739-12280758 None:intergenic 45.0%
TATCACATCTCAACACGCCA+AGG - chr4_4:12281473-12281492 None:intergenic 45.0%
TTACCGTGCTCAAGTGATTG+AGG + chr4_4:12282374-12282393 Msa0670160:three_prime_UTR 45.0%
AGGACAAGGAACCTTTGCAA+AGG + chr4_4:12282537-12282556 Msa0670160:three_prime_UTR 45.0%
AGGTGGTGAGCTATTCAACA+AGG + chr4_4:12282762-12282781 Msa0670160:three_prime_UTR 45.0%
!! CTGAAAGTATCGCCTAGCTT+CGG - chr4_4:12282812-12282831 None:intergenic 45.0%
TCCGGAAGTGATAAACCGAA+AGG + chr4_4:12283020-12283039 Msa0670160:three_prime_UTR 45.0%
CCCTTTCGGTTTATCACTTC+CGG - chr4_4:12283024-12283043 None:intergenic 45.0%
CCGGAAGTGATAAACCGAAA+GGG + chr4_4:12283021-12283040 Msa0670160:three_prime_UTR 45.0%
GATGTATCGGAAAATCGGCA+AGG + chr4_4:12283140-12283159 Msa0670160:three_prime_UTR 45.0%
!! GTATCCCAACTGGTTTGCAT+CGG + chr4_4:12283173-12283192 Msa0670160:three_prime_UTR 45.0%
ACATCCGATGCAAACCAGTT+GGG - chr4_4:12283180-12283199 None:intergenic 45.0%
TACATCCGATGCAAACCAGT+TGG - chr4_4:12283181-12283200 None:intergenic 45.0%
TGGATCCGAATCCAAAGACA+AGG + chr4_4:12283223-12283242 Msa0670160:three_prime_UTR 45.0%
AATACTCCATCAGCGTCCAA+AGG - chr4_4:12283339-12283358 None:intergenic 45.0%
! TTGGACGCTGATGGAGTATT+TGG + chr4_4:12283339-12283358 Msa0670160:three_prime_UTR 45.0%
! TGGACGCTGATGGAGTATTT+GGG + chr4_4:12283340-12283359 Msa0670160:three_prime_UTR 45.0%
! GTATTTGGGGCTTGTGAGAA+TGG + chr4_4:12283354-12283373 Msa0670160:three_prime_UTR 45.0%
!!! TCGTCAGGTTTTGACTTGTC+TGG + chr4_4:12283438-12283457 Msa0670160:three_prime_UTR 45.0%
TAGAAGGTTCCAAGGAAGGA+AGG + chr4_4:12283604-12283623 Msa0670160:three_prime_UTR 45.0%
! GGAGTACCAAAAGCTTGTGA+AGG + chr4_4:12283716-12283735 Msa0670160:three_prime_UTR 45.0%
!! ACATGGAGCATTGCAGAAAG+AGG + chr4_4:12283806-12283825 Msa0670160:three_prime_UTR 45.0%
AGCATTGCAGAAAGAGGAAC+AGG + chr4_4:12283812-12283831 Msa0670160:three_prime_UTR 45.0%
GGGTCAATATAGGTGTCTCG+TGG + chr4_4:12279538-12279557 Msa0670160:CDS 50.0%
GTCAGTTATTCCGAGACGGA+GGG - chr4_4:12280306-12280325 None:intergenic 50.0%
GGTCAATTAATTCGGGACGG+AGG + chr4_4:12280505-12280524 Msa0670160:intron 50.0%
GTCAATTAAACCGGGACGGA+GGG + chr4_4:12280618-12280637 Msa0670160:intron 50.0%
!! TTTATGGGTCGGTGTCGTGT+CGG - chr4_4:12281184-12281203 None:intergenic 50.0%
ATGAAGCACAGATCCGGACA+CGG - chr4_4:12281263-12281282 None:intergenic 50.0%
TGTCCGGATCTGTGCTTCAT+AGG + chr4_4:12281263-12281282 Msa0670160:intron 50.0%
GCTAATAGCGGCTCATCTTG+TGG - chr4_4:12281424-12281443 None:intergenic 50.0%
ACGACTCGAGTGGCTAATAG+CGG - chr4_4:12281436-12281455 None:intergenic 50.0%
GACATAGAGAACGACTCGAG+TGG - chr4_4:12281446-12281465 None:intergenic 50.0%
CGTTCTCTATGTCCAGTCCT+TGG + chr4_4:12281453-12281472 Msa0670160:intron 50.0%
CCACCTCAATCACTTGAGCA+CGG - chr4_4:12282380-12282399 None:intergenic 50.0%
GCCGAGACTAAACACCAAGA+TGG + chr4_4:12282958-12282977 Msa0670160:three_prime_UTR 50.0%
! GGACGCTGATGGAGTATTTG+GGG + chr4_4:12283341-12283360 Msa0670160:three_prime_UTR 50.0%
GGTTCCAAGGAAGGAAGGAA+AGG + chr4_4:12283609-12283628 Msa0670160:three_prime_UTR 50.0%
ACGTCCTTTCCTTCCTTCCT+TGG - chr4_4:12283616-12283635 None:intergenic 50.0%
GAAGGAAGGAAAGGACGTCT+GGG + chr4_4:12283618-12283637 Msa0670160:three_prime_UTR 50.0%
CAACCACAGCAGTTGCAACA+TGG + chr4_4:12283789-12283808 Msa0670160:three_prime_UTR 50.0%
GAGGAACAGGCTTCTGATTC+TGG + chr4_4:12283825-12283844 Msa0670160:three_prime_UTR 50.0%
! GAGAGCACAGAAGACCCAAA+GGG - chr4_4:12284048-12284067 None:intergenic 50.0%
! AGAGAGCACAGAAGACCCAA+AGG - chr4_4:12284049-12284068 None:intergenic 50.0%
GGGTCAATATAGGTGTCTCG+TGG + chr4_4:12279538-12279557 Msa0670160:CDS 50.0%
GTCAGTTATTCCGAGACGGA+GGG - chr4_4:12280306-12280325 None:intergenic 50.0%
GGTCAATTAATTCGGGACGG+AGG + chr4_4:12280505-12280524 Msa0670160:intron 50.0%
GTCAATTAAACCGGGACGGA+GGG + chr4_4:12280618-12280637 Msa0670160:intron 50.0%
!! TTTATGGGTCGGTGTCGTGT+CGG - chr4_4:12281184-12281203 None:intergenic 50.0%
ATGAAGCACAGATCCGGACA+CGG - chr4_4:12281263-12281282 None:intergenic 50.0%
TGTCCGGATCTGTGCTTCAT+AGG + chr4_4:12281263-12281282 Msa0670160:intron 50.0%
GCTAATAGCGGCTCATCTTG+TGG - chr4_4:12281424-12281443 None:intergenic 50.0%
ACGACTCGAGTGGCTAATAG+CGG - chr4_4:12281436-12281455 None:intergenic 50.0%
GACATAGAGAACGACTCGAG+TGG - chr4_4:12281446-12281465 None:intergenic 50.0%
CGTTCTCTATGTCCAGTCCT+TGG + chr4_4:12281453-12281472 Msa0670160:intron 50.0%
CCACCTCAATCACTTGAGCA+CGG - chr4_4:12282380-12282399 None:intergenic 50.0%
GCCGAGACTAAACACCAAGA+TGG + chr4_4:12282958-12282977 Msa0670160:three_prime_UTR 50.0%
! GGACGCTGATGGAGTATTTG+GGG + chr4_4:12283341-12283360 Msa0670160:three_prime_UTR 50.0%
GGTTCCAAGGAAGGAAGGAA+AGG + chr4_4:12283609-12283628 Msa0670160:three_prime_UTR 50.0%
ACGTCCTTTCCTTCCTTCCT+TGG - chr4_4:12283616-12283635 None:intergenic 50.0%
GAAGGAAGGAAAGGACGTCT+GGG + chr4_4:12283618-12283637 Msa0670160:three_prime_UTR 50.0%
CAACCACAGCAGTTGCAACA+TGG + chr4_4:12283789-12283808 Msa0670160:three_prime_UTR 50.0%
GAGGAACAGGCTTCTGATTC+TGG + chr4_4:12283825-12283844 Msa0670160:three_prime_UTR 50.0%
! GAGAGCACAGAAGACCCAAA+GGG - chr4_4:12284048-12284067 None:intergenic 50.0%
! AGAGAGCACAGAAGACCCAA+AGG - chr4_4:12284049-12284068 None:intergenic 50.0%
TAAGCGGGGAAGGCTCTACT+TGG + chr4_4:12279463-12279482 Msa0670160:CDS 55.0%
!! GGGTTTGGTGGCTGTTTGCT+GGG - chr4_4:12279697-12279716 None:intergenic 55.0%
!! TGGGTTTGGTGGCTGTTTGC+TGG - chr4_4:12279698-12279717 None:intergenic 55.0%
GTCAGTTATTCCGGGACGGA+GGG - chr4_4:12280186-12280205 None:intergenic 55.0%
GGTCAGTTATTCCGAGACGG+AGG - chr4_4:12280307-12280326 None:intergenic 55.0%
GGTCAATTAAACCGGGACGG+AGG + chr4_4:12280617-12280636 Msa0670160:intron 55.0%
!! TATTAGCGGTGTCGGCGTGT+CGG + chr4_4:12281234-12281253 Msa0670160:intron 55.0%
CATCTCAACACGCCAAGGAC+TGG - chr4_4:12281468-12281487 None:intergenic 55.0%
AGAAGGCAGTACAGCCTCGT+TGG - chr4_4:12282298-12282317 None:intergenic 55.0%
CCGTGCTCAAGTGATTGAGG+TGG + chr4_4:12282377-12282396 Msa0670160:three_prime_UTR 55.0%
AGCTGAAGCATGCCGAAGCT+AGG + chr4_4:12282797-12282816 Msa0670160:three_prime_UTR 55.0%
!! CAGGGGTGCCACATGTTGTA+TGG - chr4_4:12282990-12283009 None:intergenic 55.0%
CTAGCTCCTTTGGACGCTGA+TGG + chr4_4:12283330-12283349 Msa0670160:three_prime_UTR 55.0%
GGAAGGAAGGAAAGGACGTC+TGG + chr4_4:12283617-12283636 Msa0670160:three_prime_UTR 55.0%
GCTCCATGTTGCAACTGCTG+TGG - chr4_4:12283795-12283814 None:intergenic 55.0%
TAAGCGGGGAAGGCTCTACT+TGG + chr4_4:12279463-12279482 Msa0670160:CDS 55.0%
!! GGGTTTGGTGGCTGTTTGCT+GGG - chr4_4:12279697-12279716 None:intergenic 55.0%
!! TGGGTTTGGTGGCTGTTTGC+TGG - chr4_4:12279698-12279717 None:intergenic 55.0%
GTCAGTTATTCCGGGACGGA+GGG - chr4_4:12280186-12280205 None:intergenic 55.0%
GGTCAGTTATTCCGAGACGG+AGG - chr4_4:12280307-12280326 None:intergenic 55.0%
GGTCAATTAAACCGGGACGG+AGG + chr4_4:12280617-12280636 Msa0670160:intron 55.0%
!! TATTAGCGGTGTCGGCGTGT+CGG + chr4_4:12281234-12281253 Msa0670160:intron 55.0%
CATCTCAACACGCCAAGGAC+TGG - chr4_4:12281468-12281487 None:intergenic 55.0%
AGAAGGCAGTACAGCCTCGT+TGG - chr4_4:12282298-12282317 None:intergenic 55.0%
CCGTGCTCAAGTGATTGAGG+TGG + chr4_4:12282377-12282396 Msa0670160:three_prime_UTR 55.0%
AGCTGAAGCATGCCGAAGCT+AGG + chr4_4:12282797-12282816 Msa0670160:three_prime_UTR 55.0%
!! CAGGGGTGCCACATGTTGTA+TGG - chr4_4:12282990-12283009 None:intergenic 55.0%
CTAGCTCCTTTGGACGCTGA+TGG + chr4_4:12283330-12283349 Msa0670160:three_prime_UTR 55.0%
GGAAGGAAGGAAAGGACGTC+TGG + chr4_4:12283617-12283636 Msa0670160:three_prime_UTR 55.0%
GCTCCATGTTGCAACTGCTG+TGG - chr4_4:12283795-12283814 None:intergenic 55.0%
GGTCAGTTATTCCGGGACGG+AGG - chr4_4:12280187-12280206 None:intergenic 60.0%
TTCACGTACTCCCTCCGTCC+CGG - chr4_4:12280631-12280650 None:intergenic 60.0%
!! CTCTTTTGCCGGTGCCAACG+AGG + chr4_4:12282281-12282300 Msa0670160:three_prime_UTR 60.0%
CAGTACAGCCTCGTTGGCAC+CGG - chr4_4:12282292-12282311 None:intergenic 60.0%
TTCCGGAGCGACATACGCAG+GGG - chr4_4:12283007-12283026 None:intergenic 60.0%
CTTCCGGAGCGACATACGCA+GGG - chr4_4:12283008-12283027 None:intergenic 60.0%
ACTTCCGGAGCGACATACGC+AGG - chr4_4:12283009-12283028 None:intergenic 60.0%
GGTCAGTTATTCCGGGACGG+AGG - chr4_4:12280187-12280206 None:intergenic 60.0%
TTCACGTACTCCCTCCGTCC+CGG - chr4_4:12280631-12280650 None:intergenic 60.0%
!! CTCTTTTGCCGGTGCCAACG+AGG + chr4_4:12282281-12282300 Msa0670160:three_prime_UTR 60.0%
CAGTACAGCCTCGTTGGCAC+CGG - chr4_4:12282292-12282311 None:intergenic 60.0%
TTCCGGAGCGACATACGCAG+GGG - chr4_4:12283007-12283026 None:intergenic 60.0%
CTTCCGGAGCGACATACGCA+GGG - chr4_4:12283008-12283027 None:intergenic 60.0%
ACTTCCGGAGCGACATACGC+AGG - chr4_4:12283009-12283028 None:intergenic 60.0%
CGGGGAAGGCTCTACTTGGC+TGG + chr4_4:12279467-12279486 Msa0670160:CDS 65.0%
CACCCCTGCGTATGTCGCTC+CGG + chr4_4:12283002-12283021 Msa0670160:three_prime_UTR 65.0%
CGGGGAAGGCTCTACTTGGC+TGG + chr4_4:12279467-12279486 Msa0670160:CDS 65.0%
CACCCCTGCGTATGTCGCTC+CGG + chr4_4:12283002-12283021 Msa0670160:three_prime_UTR 65.0%
! GGCGTGTCGGTGTCCGTGTC+CGG + chr4_4:12281247-12281266 Msa0670160:intron 70.0%
! GGCGTGTCGGTGTCCGTGTC+CGG + chr4_4:12281247-12281266 Msa0670160:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 12279455 12284133 12279455 ID=Msa0670160;Name=Msa0670160
chr4_4 mRNA 12279455 12284133 12279455 ID=Msa0670160-mRNA-1;Parent=Msa0670160;Name=Msa0670160-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.5|0.33|0.66|0.5|0.66|3|1995|92
chr4_4 exon 12279455 12279598 12279455 ID=Msa0670160-mRNA-1:exon:3692;Parent=Msa0670160-mRNA-1
chr4_4 exon 12280736 12280852 12280736 ID=Msa0670160-mRNA-1:exon:3693;Parent=Msa0670160-mRNA-1
chr4_4 exon 12282121 12284133 12282121 ID=Msa0670160-mRNA-1:exon:3694;Parent=Msa0670160-mRNA-1
chr4_4 CDS 12279455 12279598 12279455 ID=Msa0670160-mRNA-1:cds;Parent=Msa0670160-mRNA-1
chr4_4 CDS 12280736 12280852 12280736 ID=Msa0670160-mRNA-1:cds;Parent=Msa0670160-mRNA-1
chr4_4 CDS 12282121 12282138 12282121 ID=Msa0670160-mRNA-1:cds;Parent=Msa0670160-mRNA-1
chr4_4 three_prime_UTR 12282139 12284133 12282139 ID=Msa0670160-mRNA-1:three_prime_utr;Parent=Msa0670160-mRNA-1
Gene Sequence

>Msa0670160

ATGAAACGTAAGCGGGGAAGGCTCTACTTGGCTGGTGAAGAAGCTGTACTTCCTTCTGTTCCACAACATGTCACAATATTATTGGGTCAATATAGGTGTCTCGTGGAAAGATCGTACTCATGCTTTGATTTGTCTTTGATTAACCCTCCACCTCATTCTTCTTCATCTTCATTTCATTTCATTTCACCCCAAAATCAGAGAACACAAAAATATTCAAAACAACACACAAATCATCACAACTCATGGCAAATCTTTTGTAAGGCATGCTTGTCATTATAA
Protein sequence

>Msa0670160

MKRKRGRLYLAGEEAVLPSVPQHVTILLGQYRCLVERSYSCFDLSLINPPPHSSSSSFHFISPQNQRTQKYSKQHTNHHNSWQIFCKACLSL*