AlfalfaGEDB | Msa0670160

M. sativa cultivar zhongmu-4 / Msa0670160

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0142460	Msa0670160	0.802268	6.081004e-49	-8.615850e-47
Msa0436370	Msa0670160	0.804583	2.015213e-49	-8.615850e-47
Msa0523780	Msa0670160	0.839737	1.324793e-57	-8.615850e-47
Msa0538490	Msa0670160	0.950287	2.250017e-108	-8.615850e-47
Msa0594290	Msa0670160	0.868597	5.800070e-66	-8.615850e-47
Msa0634320	Msa0670160	0.876878	9.838331e-69	-8.615850e-47
Msa0658570	Msa0670160	0.802447	5.587190e-49	-8.615850e-47
Msa0670160	Msa1379850	0.803041	4.211993e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 149 sgRNAs with CRISPR-Local

Find 590 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCCGATATATGGTCTTG+TGG	0.626192	4_4:+12283057	Msa0670160:three_prime_UTR
AAAGTCAAACGGTGACACAT+TGG	0.593515	4_4:+12283695	Msa0670160:three_prime_UTR
AAAGTTCTTGGTTCAAGAAG+GGG	0.545093	4_4:+12283268	Msa0670160:three_prime_UTR
AAATTCATTAACTAAGAAGT+TGG	0.492930	4_4:-12283870	None:intergenic
AACCAAAATTTACGTTGTCA+TGG	0.493973	4_4:+12282729	Msa0670160:three_prime_UTR
AACTCGACTAAATGGAAAAC+GGG	0.442606	4_4:-12283669	None:intergenic
AAGAAATTTGTAATCGTCTC+GGG	0.416115	4_4:+12283544	Msa0670160:three_prime_UTR
AAGAACGAAAGACAGAAGTG+CGG	0.740422	4_4:+12283478	Msa0670160:three_prime_UTR
AAGATAGAAGGTTCCAAGGA+AGG	0.523913	4_4:+12283600	Msa0670160:three_prime_UTR
AAGGCATTTAAATTATTACA+AGG	0.551526	4_4:-12283399	None:intergenic

Showing 1 to 10 of 149 entries

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAGCTTACTAGCATTATT+AGG	-	chr4_4:12279756-12279775	None:intergenic	30.0%
CATAATGACGTAATGATTTG+GGG	+	chr4_4:12280146-12280165	Msa0670160:intron	30.0%
AGAAAATAGGTCAGTTATTC+CGG	-	chr4_4:12280195-12280214	None:intergenic	30.0%
AATGAAGATGAAGAAGAATG+AGG	-	chr4_4:12280745-12280764	None:intergenic	30.0%
CCTGAAAAATATATGATGAG+TGG	+	chr4_4:12281519-12281538	Msa0670160:intron	30.0%
TTAAAAGATAAACGAGTTGC+TGG	+	chr4_4:12282157-12282176	Msa0670160:three_prime_UTR	30.0%
TTGTAAGATTTCTTGAGAAG+CGG	+	chr4_4:12282416-12282435	Msa0670160:three_prime_UTR	30.0%
TTAGGGAAATTATTAGGACA+AGG	+	chr4_4:12282523-12282542	Msa0670160:three_prime_UTR	30.0%
CTCTTTGTCAATAACTTTGA+TGG	-	chr4_4:12282602-12282621	None:intergenic	30.0%
CAAAGTTATTGACAAAGAGA+AGG	+	chr4_4:12282603-12282622	Msa0670160:three_prime_UTR	30.0%

Showing 1 to 10 of 590 entries

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	12279455	12284133	12279455	ID=Msa0670160;Name=Msa0670160
chr4_4	mRNA	12279455	12284133	12279455	ID=Msa0670160-mRNA-1;Parent=Msa0670160;Name=Msa0670160-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0\|0.5\|0.33\|0.66\|0.5\|0.66\|3\|1995\|92
chr4_4	exon	12279455	12279598	12279455	ID=Msa0670160-mRNA-1:exon:3692;Parent=Msa0670160-mRNA-1
chr4_4	exon	12280736	12280852	12280736	ID=Msa0670160-mRNA-1:exon:3693;Parent=Msa0670160-mRNA-1
chr4_4	exon	12282121	12284133	12282121	ID=Msa0670160-mRNA-1:exon:3694;Parent=Msa0670160-mRNA-1
chr4_4	CDS	12279455	12279598	12279455	ID=Msa0670160-mRNA-1:cds;Parent=Msa0670160-mRNA-1
chr4_4	CDS	12280736	12280852	12280736	ID=Msa0670160-mRNA-1:cds;Parent=Msa0670160-mRNA-1
chr4_4	CDS	12282121	12282138	12282121	ID=Msa0670160-mRNA-1:cds;Parent=Msa0670160-mRNA-1
chr4_4	three_prime_UTR	12282139	12284133	12282139	ID=Msa0670160-mRNA-1:three_prime_utr;Parent=Msa0670160-mRNA-1

Gene Sequence	>Msa0670160 ATGAAACGTAAGCGGGGAAGGCTCTACTTGGCTGGTGAAGAAGCTGTACTTCCTTCTGTTCCACAACATGTCACAATATTATTGGGTCAATATAGGTGTCTCGTGGAAAGATCGTACTCATGCTTTGATTTGTCTTTGATTAACCCTCCACCTCATTCTTCTTCATCTTCATTTCATTTCATTTCACCCCAAAATCAGAGAACACAAAAATATTCAAAACAACACACAAATCATCACAACTCATGGCAAATCTTTTGTAAGGCATGCTTGTCATTATAA
Protein sequence	>Msa0670160 MKRKRGRLYLAGEEAVLPSVPQHVTILLGQYRCLVERSYSCFDLSLINPPPHSSSSSFHFISPQNQRTQKYSKQHTNHHNSWQIFCKACLSL*