Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523780 | XP_024635309.1 | 83.205 | 518 | 28 | 4 | 1 | 459 | 1 | 518 | 0.0 | 859 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523780 | sp|Q00081|GLGL1_SOLTU | 79.683 | 379 | 73 | 1 | 85 | 459 | 92 | 470 | 0.0 | 651 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523780 | G7J745 | 83.205 | 518 | 28 | 4 | 1 | 459 | 1 | 518 | 0.0 | 859 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0051020 | Msa0523780 | 0.807386 | 5.183799e-50 | -8.615850e-47 |
| Msa0144360 | Msa0523780 | 0.802591 | 5.217464e-49 | -8.615850e-47 |
| Msa0152400 | Msa0523780 | 0.802117 | 6.533115e-49 | -8.615850e-47 |
| Msa0225680 | Msa0523780 | 0.805916 | 1.059220e-49 | -8.615850e-47 |
| Msa0386740 | Msa0523780 | 0.837055 | 6.514985e-57 | -8.615850e-47 |
| Msa0277420 | Msa0523780 | 0.811384 | 7.190787e-51 | -8.615850e-47 |
| Msa0485240 | Msa0523780 | 0.814039 | 1.887398e-51 | -8.615850e-47 |
| Msa0523780 | Msa0594290 | 0.813334 | 2.698041e-51 | -8.615850e-47 |
| Msa0523780 | Msa0638350 | 0.805410 | 1.352924e-49 | -8.615850e-47 |
| Msa0523780 | Msa0638360 | 0.812817 | 3.502553e-51 | -8.615850e-47 |
| Msa0523780 | Msa0670160 | 0.839737 | 1.324793e-57 | -8.615850e-47 |
| Msa0523780 | Msa0716410 | 0.802126 | 6.503954e-49 | -8.615850e-47 |
| Msa0523780 | Msa0784480 | 0.800223 | 1.594229e-48 | -8.615850e-47 |
| Msa0523780 | Msa0873220 | 0.804928 | 1.707052e-49 | -8.615850e-47 |
| Msa0523780 | Msa0938480 | 0.821742 | 3.433855e-53 | -8.615850e-47 |
| Msa0523780 | Msa1059960 | 0.823015 | 1.738695e-53 | -8.615850e-47 |
| Msa0523780 | Msa1079860 | 0.800357 | 1.497316e-48 | -8.615850e-47 |
| Msa0523780 | Msa1105160 | 0.805517 | 1.285162e-49 | -8.615850e-47 |
| Msa0523780 | Msa1179940 | 0.806479 | 8.061817e-50 | -8.615850e-47 |
| Msa0523780 | Msa1179970 | 0.807981 | 3.875939e-50 | -8.615850e-47 |
| Msa0523780 | Msa1188710 | 0.822189 | 2.705316e-53 | -8.615850e-47 |
| Msa0523780 | Msa1227460 | 0.800641 | 1.310113e-48 | -8.615850e-47 |
| Msa0523780 | Msa1227640 | 0.804692 | 1.912387e-49 | -8.615850e-47 |
| Msa0523780 | Msa1264420 | 0.806343 | 8.612165e-50 | -8.615850e-47 |
| Msa0523780 | Msa1270420 | 0.804333 | 2.271412e-49 | -8.615850e-47 |
| Msa0523780 | Msa1323690 | 0.802622 | 5.141563e-49 | -8.615850e-47 |
| Msa0523780 | Msa1330180 | 0.801829 | 7.487259e-49 | -8.615850e-47 |
| Msa0523780 | Msa1368500 | 0.874181 | 8.253750e-68 | -8.615850e-47 |
| Msa0523780 | Msa1418240 | 0.824529 | 7.683384e-54 | -8.615850e-47 |
| Msa0523780 | Msa1459180 | 0.806409 | 8.344308e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523780 | MtrunA17_Chr4g0035171 | 68.561 | 528 | 97 | 6 | 1 | 459 | 1 | 528 | 0.0 | 723 |
| Msa0523780 | MtrunA17_Chr3g0141761 | 73.351 | 379 | 96 | 2 | 86 | 459 | 152 | 530 | 0.0 | 589 |
| Msa0523780 | MtrunA17_Chr4g0074531 | 66.755 | 379 | 121 | 2 | 86 | 459 | 143 | 521 | 0.0 | 548 |
| Msa0523780 | MtrunA17_Chr7g0271011 | 64.858 | 387 | 123 | 3 | 86 | 459 | 150 | 536 | 0.0 | 526 |
| Msa0523780 | MtrunA17_Chr3g0144741 | 76.036 | 338 | 26 | 3 | 1 | 283 | 1 | 338 | 1.95e-177 | 501 |
| Msa0523780 | MtrunA17_Chr5g0447341 | 52.880 | 382 | 168 | 7 | 85 | 459 | 139 | 515 | 3.35e-138 | 407 |
| Msa0523780 | MtrunA17_Chr3g0120471 | 53.403 | 382 | 163 | 8 | 85 | 459 | 138 | 511 | 1.64e-136 | 402 |
| Msa0523780 | MtrunA17_Chr0c30g0494071 | 51.697 | 383 | 142 | 6 | 85 | 459 | 68 | 415 | 6.81e-127 | 374 |
| Msa0523780 | MtrunA17_Chr3g0144731 | 94.268 | 157 | 5 | 1 | 307 | 459 | 5 | 161 | 1.16e-103 | 305 |
| Msa0523780 | MtrunA17_Chr4g0077071 | 43.038 | 79 | 44 | 1 | 296 | 373 | 2 | 80 | 5.59e-17 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523780 | AT4G39210.2 | 75.132 | 378 | 90 | 1 | 86 | 459 | 144 | 521 | 0.0 | 615 |
| Msa0523780 | AT4G39210.1 | 75.132 | 378 | 90 | 1 | 86 | 459 | 144 | 521 | 0.0 | 615 |
| Msa0523780 | AT1G27680.1 | 75.000 | 380 | 90 | 2 | 85 | 459 | 139 | 518 | 0.0 | 614 |
| Msa0523780 | AT2G21590.2 | 75.661 | 378 | 88 | 1 | 86 | 459 | 146 | 523 | 0.0 | 598 |
| Msa0523780 | AT2G21590.3 | 75.661 | 378 | 88 | 1 | 86 | 459 | 146 | 523 | 0.0 | 598 |
| Msa0523780 | AT2G21590.5 | 75.661 | 378 | 88 | 1 | 86 | 459 | 146 | 523 | 0.0 | 598 |
| Msa0523780 | AT2G21590.4 | 75.661 | 378 | 88 | 1 | 86 | 459 | 146 | 523 | 0.0 | 598 |
| Msa0523780 | AT2G21590.7 | 75.661 | 378 | 88 | 1 | 86 | 459 | 146 | 523 | 0.0 | 598 |
| Msa0523780 | AT2G21590.1 | 75.661 | 378 | 88 | 1 | 86 | 459 | 146 | 523 | 0.0 | 598 |
| Msa0523780 | AT2G21590.6 | 75.661 | 378 | 88 | 1 | 86 | 459 | 146 | 523 | 0.0 | 598 |
| Msa0523780 | AT5G19220.1 | 65.079 | 378 | 128 | 1 | 86 | 459 | 145 | 522 | 0.0 | 541 |
| Msa0523780 | AT5G48300.1 | 53.665 | 382 | 165 | 7 | 85 | 459 | 144 | 520 | 4.47e-139 | 409 |
| Msa0523780 | AT1G05610.1 | 37.824 | 386 | 211 | 11 | 85 | 459 | 109 | 476 | 7.58e-81 | 258 |
| Msa0523780 | AT1G05610.2 | 37.532 | 389 | 214 | 11 | 85 | 459 | 109 | 482 | 1.25e-80 | 258 |
Find 162 sgRNAs with CRISPR-Local
Find 322 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAAAAGTAAAATAAATTA+AGG | 0.198905 | 3_4:+77244040 | Msa0523780:three_prime_UTR |
| AGGAAAGGAAGTTGCCTTTA+TGG | 0.200848 | 3_4:-77240152 | None:intergenic |
| GAGTAACACTTACTTAATTT+TGG | 0.212813 | 3_4:-77243475 | None:intergenic |
| CATATCGCCCGCACCTATTT+TGG | 0.215257 | 3_4:+77241098 | Msa0523780:CDS |
| AAATCATTCCTTCCGCTATA+AGG | 0.235771 | 3_4:+77242407 | Msa0523780:CDS |
| GAAATGTTGTGTTGGGATTT+TGG | 0.247530 | 3_4:-77240098 | None:intergenic |
| CAGTGATACAATAATTTAAA+AGG | 0.248078 | 3_4:-77244120 | None:intergenic |
| GAGATCACTGCAATGGCTTC+TGG | 0.252509 | 3_4:+77240294 | Msa0523780:exon |
| AACACTCCCTCCCGCATCTT+TGG | 0.256096 | 3_4:+77243896 | Msa0523780:three_prime_UTR |
| GTTGATGCCATTACCAAAAT+AGG | 0.260803 | 3_4:-77241111 | None:intergenic |
| CTCGCCATATATTGCATCTA+TGG | 0.272650 | 3_4:+77242306 | Msa0523780:CDS |
| ATTATTAATTTATTAATTAT+AGG | 0.274466 | 3_4:+77240026 | Msa0523780:five_prime_UTR |
| GAAAGATCACGTTTAGATTA+TGG | 0.279986 | 3_4:+77242959 | Msa0523780:CDS |
| CACTTGCAAGGGAGAGGATA+TGG | 0.290138 | 3_4:-77244088 | None:intergenic |
| ATTTCTTGCACCTACCTCTT+TGG | 0.304070 | 3_4:-77242611 | None:intergenic |
| ACACTCCCTCCCGCATCTTT+GGG | 0.308517 | 3_4:+77243897 | Msa0523780:three_prime_UTR |
| GCAGCATGTTTGATCTTCTT+CGG | 0.326859 | 3_4:-77240447 | None:intergenic |
| TGCAAGAAGAGAAGCAATTT+CGG | 0.328432 | 3_4:-77243418 | None:intergenic |
| GAAAGCGGCATGTGTAAAAT+AGG | 0.331458 | 3_4:+77243960 | Msa0523780:three_prime_UTR |
| CAGCATGTTTGATCTTCTTC+GGG | 0.341531 | 3_4:-77240446 | None:intergenic |
| GGAGACTACTGGGAAGATAT+TGG | 0.344965 | 3_4:+77242550 | Msa0523780:CDS |
| AGCAAGGTTAGCATCGTAAA+AGG | 0.345758 | 3_4:-77242584 | None:intergenic |
| TTCAGCCGTGCATCAGATTA+CGG | 0.351349 | 3_4:+77242038 | Msa0523780:intron |
| TGAGCTTACCAAGGAACCTT+TGG | 0.354621 | 3_4:-77240499 | None:intergenic |
| ATTGACAAGAATGCAAAGAT+TGG | 0.362465 | 3_4:+77243599 | Msa0523780:CDS |
| GAATCCAGGAGATGTGAAAA+TGG | 0.366447 | 3_4:-77242733 | None:intergenic |
| AAGAGAAGCAATTTCGGATT+CGG | 0.370014 | 3_4:-77243412 | None:intergenic |
| GAAGCTTCAACAACAGTTCC+TGG | 0.372443 | 3_4:+77240391 | Msa0523780:CDS |
| GAAACATCCATGGGAGATAA+TGG | 0.382042 | 3_4:-77242900 | None:intergenic |
| AAAATGGGTGTTGGGTTTAA+CGG | 0.384006 | 3_4:-77240325 | None:intergenic |
| CACTTATTTCCCGCTTCTCC+TGG | 0.385587 | 3_4:-77241488 | None:intergenic |
| TGGAGCTGTCATATAAATAA+TGG | 0.388609 | 3_4:+77243817 | Msa0523780:exon |
| TGCCTTCATTTATGAGACTA+AGG | 0.396642 | 3_4:+77240686 | Msa0523780:CDS |
| TCAATTCTGCTTCCCTCAAC+CGG | 0.402666 | 3_4:+77241075 | Msa0523780:CDS |
| GCTTTCAGATCAGCCCCTTT+CGG | 0.407207 | 3_4:-77242110 | None:intergenic |
| TTCACGAGAAATGTTGTGTT+GGG | 0.408575 | 3_4:-77240105 | None:intergenic |
| AATCATTCCTTCCGCTATAA+GGG | 0.411692 | 3_4:+77242408 | Msa0523780:CDS |
| CGGATGTAGAACCCATCTTC+TGG | 0.415604 | 3_4:-77243752 | None:intergenic |
| GTATTCCTTCCAATTCCAAT+TGG | 0.417493 | 3_4:-77243453 | None:intergenic |
| GAGCTTACCAAGGAACCTTT+GGG | 0.417954 | 3_4:-77240498 | None:intergenic |
| GGAAAGGTCCCAATTGGAAT+TGG | 0.427599 | 3_4:+77243444 | Msa0523780:CDS |
| AGCACACGAAATTGTAATAT+CGG | 0.428769 | 3_4:-77241858 | None:intergenic |
| TACAATTTCGTGTGCTGCTG+TGG | 0.429809 | 3_4:+77241865 | Msa0523780:CDS |
| TTTGGTAATGGCATCAACTT+TGG | 0.430851 | 3_4:+77241116 | Msa0523780:CDS |
| TATAGCGGAAGGAATGATTT+CGG | 0.431636 | 3_4:-77242404 | None:intergenic |
| TGTCGAAAATGTATTGATCT+TGG | 0.433601 | 3_4:+77241686 | Msa0523780:CDS |
| CGGCAGTTGTCAATCTTTGT+TGG | 0.434231 | 3_4:-77242762 | None:intergenic |
| TTCTCTTCTTGCAGAGGGAA+AGG | 0.438360 | 3_4:+77243428 | Msa0523780:CDS |
| AAGCAATTTCGGATTCGGTT+TGG | 0.438840 | 3_4:-77243407 | None:intergenic |
| TTTACAGGACACTGTAATGA+TGG | 0.445182 | 3_4:+77243371 | Msa0523780:intron |
| TGCGGGCGATATGCCGGTTG+AGG | 0.449127 | 3_4:-77241088 | None:intergenic |
| TCTGGCTCATACTTCCATAA+AGG | 0.453773 | 3_4:+77240138 | Msa0523780:five_prime_UTR |
| CGTGTGCTGCTGTGGGTGAC+AGG | 0.464034 | 3_4:+77241873 | Msa0523780:CDS |
| TTAGTGGCTATTTCATGAGC+TGG | 0.465861 | 3_4:+77243840 | Msa0523780:three_prime_UTR |
| AGATGATCCCAAAGGTTCCT+TGG | 0.467593 | 3_4:+77240491 | Msa0523780:CDS |
| TTGACAAGAATGCAAAGATT+GGG | 0.468391 | 3_4:+77243600 | Msa0523780:CDS |
| TCTATGATACTTGGAGCAAC+AGG | 0.469650 | 3_4:-77244191 | None:intergenic |
| TTTGTTGGTGGTAGGAATCC+AGG | 0.470257 | 3_4:-77242747 | None:intergenic |
| AAGTAGATACCTCTCGTCTT+GGG | 0.473092 | 3_4:+77242260 | Msa0523780:CDS |
| TATTCCTTCCAATTCCAATT+GGG | 0.473128 | 3_4:-77243452 | None:intergenic |
| GTCTATCGGTCTATGATACT+TGG | 0.477449 | 3_4:-77244200 | None:intergenic |
| GAAAATGTATTGATCTTGGC+GGG | 0.477652 | 3_4:+77241690 | Msa0523780:CDS |
| CACTCCCTCCCGCATCTTTG+GGG | 0.478888 | 3_4:+77243898 | Msa0523780:three_prime_UTR |
| TCGCCATATATTGCATCTAT+GGG | 0.481636 | 3_4:+77242307 | Msa0523780:CDS |
| CAACAAAGATTGACAACTGC+CGG | 0.485452 | 3_4:+77242763 | Msa0523780:CDS |
| GCAGAGGGAAAGGTCCCAAT+TGG | 0.488186 | 3_4:+77243438 | Msa0523780:CDS |
| ACACAAACACCAGGAGAAGC+GGG | 0.489342 | 3_4:+77241479 | Msa0523780:CDS |
| GCGGGAAATAAGTGGTTTCA+AGG | 0.491407 | 3_4:+77241497 | Msa0523780:CDS |
| AGGTGTCCTTTGCACTTGCA+AGG | 0.491764 | 3_4:-77244100 | None:intergenic |
| GTCATATAAATAATGGTTAG+TGG | 0.492267 | 3_4:+77243824 | Msa0523780:exon |
| AGCTGGTTTCTCTGAGGCGT+CGG | 0.494617 | 3_4:+77243857 | Msa0523780:three_prime_UTR |
| ACAAAAGTAAAATAAATTAA+GGG | 0.497464 | 3_4:+77244041 | Msa0523780:three_prime_UTR |
| GGATCATAAAACTGAAACTT+CGG | 0.499079 | 3_4:-77242702 | None:intergenic |
| AGCAGGAATCACAGTCGTAA+TGG | 0.503836 | 3_4:+77243775 | Msa0523780:CDS |
| AATAGGTGCGGGCGATATGC+CGG | 0.504786 | 3_4:-77241094 | None:intergenic |
| GACACAAACACCAGGAGAAG+CGG | 0.505212 | 3_4:+77241478 | Msa0523780:CDS |
| GTATGGTGACTGTTGCAAAA+TGG | 0.505746 | 3_4:+77243924 | Msa0523780:three_prime_UTR |
| ACAATTTACCTGGATATTTG+AGG | 0.505775 | 3_4:+77241538 | Msa0523780:CDS |
| GATGTGAAAATGGGTGTCTT+GGG | 0.507817 | 3_4:-77242723 | None:intergenic |
| AGATGTGAAAATGGGTGTCT+TGG | 0.507882 | 3_4:-77242724 | None:intergenic |
| CAAGTAGATACCTCTCGTCT+TGG | 0.508446 | 3_4:+77242259 | Msa0523780:CDS |
| AATGATTAGAGTGGTGATGA+AGG | 0.510104 | 3_4:-77240172 | None:intergenic |
| CAAGGTCCATGTAATCCATT+CGG | 0.514352 | 3_4:-77241725 | None:intergenic |
| GTTGAATCGTACATTCTCTC+AGG | 0.518546 | 3_4:-77242922 | None:intergenic |
| CCTTTGCACTTGCAAGGGAG+AGG | 0.520026 | 3_4:-77244094 | None:intergenic |
| GAGAAGGCAACGATAGAAGA+TGG | 0.521411 | 3_4:+77243797 | Msa0523780:CDS |
| GGATTACATGGACCTTGTGC+AGG | 0.524100 | 3_4:+77241731 | Msa0523780:CDS |
| CAGTTGTCAATCTTTGTTGG+TGG | 0.526500 | 3_4:-77242759 | None:intergenic |
| GCCATTACCAAAATAGGTGC+GGG | 0.529257 | 3_4:-77241105 | None:intergenic |
| TTTAGCTACCTCAAATATCC+AGG | 0.529473 | 3_4:-77241546 | None:intergenic |
| GAAGCAGATAGACCAGAAGA+TGG | 0.530049 | 3_4:+77243740 | Msa0523780:CDS |
| CGGGCATAGTATTACTCAGC+AGG | 0.531018 | 3_4:+77244222 | Msa0523780:three_prime_UTR |
| GCGGGCGATATGCCGGTTGA+GGG | 0.537648 | 3_4:-77241087 | None:intergenic |
| TTTATACCGAATGGATTACA+TGG | 0.541016 | 3_4:+77241719 | Msa0523780:CDS |
| GTTTCTTGAGATCACTGCAA+TGG | 0.541462 | 3_4:+77240287 | Msa0523780:exon |
| GCCCTTAGTCTCATAAATGA+AGG | 0.542167 | 3_4:-77240688 | None:intergenic |
| AATCCAGGAGATGTGAAAAT+GGG | 0.542716 | 3_4:-77242732 | None:intergenic |
| TTTCACGAGAAATGTTGTGT+TGG | 0.543564 | 3_4:-77240106 | None:intergenic |
| CTCGTGAAAGGAGAGAGGTC+TGG | 0.543796 | 3_4:+77240120 | Msa0523780:five_prime_UTR |
| TGTCAATCTTTGTTGGTGGT+AGG | 0.544891 | 3_4:-77242755 | None:intergenic |
| ATTGCTTCTCTTCTTGCAGA+GGG | 0.546628 | 3_4:+77243423 | Msa0523780:CDS |
| GGTGTCCTTTGCACTTGCAA+GGG | 0.547102 | 3_4:-77244099 | None:intergenic |
| ATGCTGTGAGACAATTTACC+TGG | 0.547645 | 3_4:+77241528 | Msa0523780:CDS |
| TTAGAGTGGTGATGAAGGAA+AGG | 0.548953 | 3_4:-77240167 | None:intergenic |
| CAGGAGAAGCGGGAAATAAG+TGG | 0.554089 | 3_4:+77241489 | Msa0523780:CDS |
| TGAAAGCAAAATGATTAGAG+TGG | 0.555391 | 3_4:-77240181 | None:intergenic |
| TGGTTTCTCTGAGGCGTCGG+AGG | 0.556783 | 3_4:+77243860 | Msa0523780:three_prime_UTR |
| ATTCTCTCAGGAAACATCCA+TGG | 0.560478 | 3_4:-77242910 | None:intergenic |
| CGAAAATGTATTGATCTTGG+CGG | 0.562354 | 3_4:+77241689 | Msa0523780:CDS |
| GTGGATGCCATTATCTCCCA+TGG | 0.562721 | 3_4:+77242893 | Msa0523780:CDS |
| TTACAGGACACTGTAATGAT+GGG | 0.563295 | 3_4:+77243372 | Msa0523780:intron |
| ACGATTCAACACTCCATTGT+GGG | 0.563420 | 3_4:+77242935 | Msa0523780:CDS |
| AATGGCATCAACTTTGGTGA+TGG | 0.564301 | 3_4:+77241122 | Msa0523780:CDS |
| CAACAACAGTTCCTGGGTCA+CGG | 0.564955 | 3_4:+77240398 | Msa0523780:CDS |
| GTAATACTATGCCCGTCTAT+CGG | 0.565630 | 3_4:-77244214 | None:intergenic |
| GATGGGTTCTACATCCGAGC+AGG | 0.567281 | 3_4:+77243758 | Msa0523780:CDS |
| AACACAACATTTCTCGTGAA+AGG | 0.568175 | 3_4:+77240108 | Msa0523780:five_prime_UTR |
| AGTATCATAGACCGATAGAC+GGG | 0.569553 | 3_4:+77244203 | Msa0523780:three_prime_UTR |
| ACTCCCTCCCGCATCTTTGG+GGG | 0.569992 | 3_4:+77243899 | Msa0523780:three_prime_UTR |
| GATCCGAAGTCATTAGATGT+AGG | 0.572500 | 3_4:-77242382 | None:intergenic |
| CTTTGGTGATGGATTTGTCG+AGG | 0.575589 | 3_4:+77241133 | Msa0523780:CDS |
| GCCTTCATTTATGAGACTAA+GGG | 0.575651 | 3_4:+77240687 | Msa0523780:CDS |
| GACATTGTGTTCCCTTATAG+CGG | 0.578172 | 3_4:-77242419 | None:intergenic |
| TTACGACTGTGATTCCTGCT+CGG | 0.579118 | 3_4:-77243772 | None:intergenic |
| AATTGCTTCTCTTCTTGCAG+AGG | 0.580389 | 3_4:+77243422 | Msa0523780:CDS |
| CGCCATATATTGCATCTATG+GGG | 0.580655 | 3_4:+77242308 | Msa0523780:CDS |
| TTGTGTTCCCTTATAGCGGA+AGG | 0.581605 | 3_4:-77242415 | None:intergenic |
| AAATGTATTGATCTTGGCGG+GGG | 0.586103 | 3_4:+77241692 | Msa0523780:CDS |
| TATCCTACATCTAATGACTT+CGG | 0.591005 | 3_4:+77242379 | Msa0523780:CDS |
| ATGGTAACTTCATAGCTCAC+AGG | 0.591489 | 3_4:-77244069 | None:intergenic |
| TACGATTCAACACTCCATTG+TGG | 0.592126 | 3_4:+77242934 | Msa0523780:CDS |
| AACAAAGATTGACAACTGCC+GGG | 0.592195 | 3_4:+77242764 | Msa0523780:CDS |
| AGGTCCCAATTGGAATTGGA+AGG | 0.593367 | 3_4:+77243448 | Msa0523780:CDS |
| CTACCTCTTTGGTAAGAGCA+AGG | 0.597638 | 3_4:-77242600 | None:intergenic |
| AATCACAGTCGTAATGGAGA+AGG | 0.598873 | 3_4:+77243781 | Msa0523780:CDS |
| ACGTGATCTTTCACCCACAA+TGG | 0.598941 | 3_4:-77242948 | None:intergenic |
| CTGGCGGCGACACAAACACC+AGG | 0.599567 | 3_4:+77241470 | Msa0523780:CDS |
| ACAATTTCGTGTGCTGCTGT+GGG | 0.600540 | 3_4:+77241866 | Msa0523780:CDS |
| CCTCTCCCTTGCAAGTGCAA+AGG | 0.601436 | 3_4:+77244094 | Msa0523780:three_prime_UTR |
| ATCAGATTACGGATTGGTCA+AGG | 0.601973 | 3_4:+77242049 | Msa0523780:CDS |
| AAGCTTCAACAACAGTTCCT+GGG | 0.603713 | 3_4:+77240392 | Msa0523780:CDS |
| GGCGAGTTCAATGCATCTTG+TGG | 0.605926 | 3_4:-77242289 | None:intergenic |
| AAGTATCATAGACCGATAGA+CGG | 0.608777 | 3_4:+77244202 | Msa0523780:three_prime_UTR |
| AAGCAGATAGACCAGAAGAT+GGG | 0.608981 | 3_4:+77243741 | Msa0523780:CDS |
| CTTACTTCAGATGATCCCAA+AGG | 0.609533 | 3_4:+77240483 | Msa0523780:CDS |
| TGCCATTACCAAAATAGGTG+CGG | 0.611817 | 3_4:-77241106 | None:intergenic |
| TAACCTTGCTCTTACCAAAG+AGG | 0.620952 | 3_4:+77242597 | Msa0523780:CDS |
| TTCTCTCAGGAAACATCCAT+GGG | 0.621640 | 3_4:-77242909 | None:intergenic |
| ATTCAACTGATCCGTGACCC+AGG | 0.624435 | 3_4:-77240409 | None:intergenic |
| AAAATGTATTGATCTTGGCG+GGG | 0.624444 | 3_4:+77241691 | Msa0523780:CDS |
| CCGTGCATCAGATTACGGAT+TGG | 0.628119 | 3_4:+77242043 | Msa0523780:CDS |
| CCAATCCGTAATCTGATGCA+CGG | 0.631395 | 3_4:-77242043 | None:intergenic |
| GCCATATATTGCATCTATGG+GGG | 0.635669 | 3_4:+77242309 | Msa0523780:CDS |
| AGGGGCTGATCTGAAAGCAA+TGG | 0.635698 | 3_4:+77242115 | Msa0523780:CDS |
| GGTATGTTGAATAGAGAAAG+CGG | 0.636993 | 3_4:+77243945 | Msa0523780:three_prime_UTR |
| TTCATGAGCTGGTTTCTCTG+AGG | 0.638752 | 3_4:+77243851 | Msa0523780:three_prime_UTR |
| TTGGTCAAGGTAGACGAGAG+AGG | 0.645991 | 3_4:+77242062 | Msa0523780:CDS |
| AAATGGTAAATAGGTTCTGG+CGG | 0.656449 | 3_4:+77241454 | Msa0523780:intron |
| GCGTCGGAGGAAGCATTGCG+AGG | 0.662811 | 3_4:+77243873 | Msa0523780:three_prime_UTR |
| CATTTCTCGTGAAAGGAGAG+AGG | 0.662923 | 3_4:+77240115 | Msa0523780:five_prime_UTR |
| TGGCGACAACCCAAGACGAG+AGG | 0.678555 | 3_4:-77242269 | None:intergenic |
| TTACAATGTATACCTGCACA+AGG | 0.713916 | 3_4:-77241743 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTAATTTATTAATTAT+AGG | + | chr3_4:77240026-77240045 | Msa0523780:five_prime_UTR | 0.0% |
| !!! | TTTTTTAGAATTTGAAAAAT+GGG | - | chr3_4:77240343-77240362 | None:intergenic | 10.0% |
| !!! | CTAATTATTTTTATATACTT+TGG | - | chr3_4:77240853-77240872 | None:intergenic | 10.0% |
| !! | ATATATAGTTATTGATAAAA+AGG | - | chr3_4:77241215-77241234 | None:intergenic | 10.0% |
| !! | ACAAAAGTAAAATAAATTAA+GGG | + | chr3_4:77244041-77244060 | Msa0523780:three_prime_UTR | 10.0% |
| !!! | CTTTTTTAGAATTTGAAAAA+TGG | - | chr3_4:77240344-77240363 | None:intergenic | 15.0% |
| !!! | CATTTTTCAAATTCTAAAAA+AGG | + | chr3_4:77240342-77240361 | Msa0523780:CDS | 15.0% |
| !!! | ATTATTTTTTCTTTCAGAAT+TGG | - | chr3_4:77240553-77240572 | None:intergenic | 15.0% |
| !!! | ATATGAATTTTGATCATTAT+TGG | + | chr3_4:77240571-77240590 | Msa0523780:intron | 15.0% |
| !! | AAATGGTTTAAATAACAAAA+AGG | - | chr3_4:77241579-77241598 | None:intergenic | 15.0% |
| !!! | AATAAAATTTCTGATTTTTG+AGG | + | chr3_4:77241615-77241634 | Msa0523780:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTGAACCA+GGG | - | chr3_4:77243053-77243072 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTTTGAACC+AGG | - | chr3_4:77243054-77243073 | None:intergenic | 15.0% |
| !!! | TTTTATATTTAGTTAGTAGT+AGG | - | chr3_4:77243345-77243364 | None:intergenic | 15.0% |
| !!! | AATATAAAATCATCTTTTAC+AGG | + | chr3_4:77243356-77243375 | Msa0523780:intron | 15.0% |
| !! | CACAAAAGTAAAATAAATTA+AGG | + | chr3_4:77244040-77244059 | Msa0523780:three_prime_UTR | 15.0% |
| !!! | TTAATTTAATTTTTAACTGG+TGG | + | chr3_4:77244148-77244167 | Msa0523780:three_prime_UTR | 15.0% |
| !!! | ATTTGTTTGTCTATAGTTTT+TGG | + | chr3_4:77240052-77240071 | Msa0523780:five_prime_UTR | 20.0% |
| !!! | TCTAAAAAAGGTTCTTTTTT+TGG | + | chr3_4:77240354-77240373 | Msa0523780:CDS | 20.0% |
| !!! | ACAATGGAAATTACATTTTT+TGG | - | chr3_4:77240718-77240737 | None:intergenic | 20.0% |
| !! | AAATGTAATTTCCATTGTAT+TGG | + | chr3_4:77240720-77240739 | Msa0523780:intron | 20.0% |
| !! | AATGTAATTTCCATTGTATT+GGG | + | chr3_4:77240721-77240740 | Msa0523780:intron | 20.0% |
| !! | AATAGAAACAAAGTTGAAAT+TGG | - | chr3_4:77241409-77241428 | None:intergenic | 20.0% |
| !! | CTAATTAAAGTGAATCTAAA+TGG | + | chr3_4:77241437-77241456 | Msa0523780:intron | 20.0% |
| !!! | ATTTTCGACATTTATATTCT+TGG | - | chr3_4:77241676-77241695 | None:intergenic | 20.0% |
| !! | TGCAATGCATATATATTTAT+TGG | - | chr3_4:77242460-77242479 | None:intergenic | 20.0% |
| !! | GAATAATGAGTCTATAAATA+TGG | - | chr3_4:77243006-77243025 | None:intergenic | 20.0% |
| !!! | ATTCATTCTATTTTTACATG+TGG | - | chr3_4:77243996-77244015 | None:intergenic | 20.0% |
| !! | CAGTGATACAATAATTTAAA+AGG | - | chr3_4:77244123-77244142 | None:intergenic | 20.0% |
| !!! | AAGAAACTAAACTGTTTTTG+AGG | - | chr3_4:77240274-77240293 | None:intergenic | 25.0% |
| !!! | TTTTTTGGAGAAAGAATCAA+AGG | + | chr3_4:77240369-77240388 | Msa0523780:CDS | 25.0% |
| !! | TATGTGCCTACATTTTTATT+TGG | + | chr3_4:77240617-77240636 | Msa0523780:intron | 25.0% |
| !!! | ATGTGCCTACATTTTTATTT+GGG | + | chr3_4:77240618-77240637 | Msa0523780:intron | 25.0% |
| ! | CATATCCCAAATAAAAATGT+AGG | - | chr3_4:77240626-77240645 | None:intergenic | 25.0% |
| ! | AATAATTAGAGACTAAAGTG+TGG | + | chr3_4:77240864-77240883 | Msa0523780:intron | 25.0% |
| ! | ATATACTTAAGGGAATAAAC+TGG | + | chr3_4:77240921-77240940 | Msa0523780:intron | 25.0% |
| ! | AGTGAATCTAAATGGTAAAT+AGG | + | chr3_4:77241445-77241464 | Msa0523780:intron | 25.0% |
| ! | TTATAGAAAATACGGAGAAA+TGG | - | chr3_4:77241596-77241615 | None:intergenic | 25.0% |
| !! | AGTATTCAATTCTTTGTTGT+AGG | + | chr3_4:77241647-77241666 | Msa0523780:intron | 25.0% |
| !!! | ATTGTAATTGTTTTGTAGAG+TGG | + | chr3_4:77241759-77241778 | Msa0523780:intron | 25.0% |
| !! | AATTTTCAGAAAAACCGAAA+GGG | + | chr3_4:77242096-77242115 | Msa0523780:CDS | 25.0% |
| !!! | TTTTACTCAAGCTTTTGAAA+TGG | + | chr3_4:77242353-77242372 | Msa0523780:CDS | 25.0% |
| ! | ATGTATTTATCCATTTCAGA+AGG | + | chr3_4:77242485-77242504 | Msa0523780:intron | 25.0% |
| ! | TACTTACAGTCCAATTTATA+AGG | + | chr3_4:77243206-77243225 | Msa0523780:intron | 25.0% |
| ! | TCAAGGTTAACCTTATAAAT+TGG | - | chr3_4:77243219-77243238 | None:intergenic | 25.0% |
| !! | GAGTAACACTTACTTAATTT+TGG | - | chr3_4:77243478-77243497 | None:intergenic | 25.0% |
| !! | AATTAAGTAAGTGTTACTCA+CGG | + | chr3_4:77243479-77243498 | Msa0523780:intron | 25.0% |
| !! | AATATCAGTTAGTAGTTTTC+TGG | + | chr3_4:77243659-77243678 | Msa0523780:intron | 25.0% |
| !! | ATAAACCATTCGAGTTTATA+AGG | - | chr3_4:77243705-77243724 | None:intergenic | 25.0% |
| ! | GTCATATAAATAATGGTTAG+TGG | + | chr3_4:77243824-77243843 | Msa0523780:exon | 25.0% |
| !!! | ATTCTATTTTTACATGTGGT+GGG | - | chr3_4:77243992-77244011 | None:intergenic | 25.0% |
| TGAAAGCAAAATGATTAGAG+TGG | - | chr3_4:77240184-77240203 | None:intergenic | 30.0% | |
| !!! | TAAACTGTTTTTGAGGTTGA+AGG | - | chr3_4:77240267-77240286 | None:intergenic | 30.0% |
| GAATTTGAAAAATGGGTGTT+GGG | - | chr3_4:77240336-77240355 | None:intergenic | 30.0% | |
| AGAATTTGAAAAATGGGTGT+TGG | - | chr3_4:77240337-77240356 | None:intergenic | 30.0% | |
| ! | TACTTTGGGAACTAAATTGA+TGG | - | chr3_4:77240838-77240857 | None:intergenic | 30.0% |
| AAACATAGGGAACAAATGTT+AGG | - | chr3_4:77240956-77240975 | None:intergenic | 30.0% | |
| !!! | TGTTCCCTATGTTTGTTTTA+AGG | + | chr3_4:77240962-77240981 | Msa0523780:intron | 30.0% |
| GGAACCTTAAAACAAACATA+GGG | - | chr3_4:77240969-77240988 | None:intergenic | 30.0% | |
| AGGAACCTTAAAACAAACAT+AGG | - | chr3_4:77240970-77240989 | None:intergenic | 30.0% | |
| !!! | TTTGTTTTAAGGTTCCTGTT+GGG | + | chr3_4:77240973-77240992 | Msa0523780:intron | 30.0% |
| CTATTTATACAGTTGCTCAT+TGG | - | chr3_4:77241023-77241042 | None:intergenic | 30.0% | |
| ATGAGCAACTGTATAAATAG+TGG | + | chr3_4:77241023-77241042 | Msa0523780:intron | 30.0% | |
| ! | TTTCTTTGGAGGGATATTAT+TGG | - | chr3_4:77241275-77241294 | None:intergenic | 30.0% |
| !!! | TGAAGTTTTGTTTCTTTGGA+GGG | - | chr3_4:77241285-77241304 | None:intergenic | 30.0% |
| !!! | CTACTGAAGTTTTGTTTCTT+TGG | - | chr3_4:77241289-77241308 | None:intergenic | 30.0% |
| GAAACAAAACTTCAGTAGTT+TGG | + | chr3_4:77241291-77241310 | Msa0523780:intron | 30.0% | |
| TGAATAAAGAAGCTCTTTCT+TGG | + | chr3_4:77241325-77241344 | Msa0523780:intron | 30.0% | |
| GAGAAAAAAATACAATCCAC+CGG | + | chr3_4:77241367-77241386 | Msa0523780:intron | 30.0% | |
| TCTAAATGGTAAATAGGTTC+TGG | + | chr3_4:77241451-77241470 | Msa0523780:intron | 30.0% | |
| ACAATTTACCTGGATATTTG+AGG | + | chr3_4:77241538-77241557 | Msa0523780:CDS | 30.0% | |
| ! | TGTCGAAAATGTATTGATCT+TGG | + | chr3_4:77241686-77241705 | Msa0523780:CDS | 30.0% |
| !! | TTTATACCGAATGGATTACA+TGG | + | chr3_4:77241719-77241738 | Msa0523780:CDS | 30.0% |
| AGCACACGAAATTGTAATAT+CGG | - | chr3_4:77241861-77241880 | None:intergenic | 30.0% | |
| CAAGAAGAAACACATATAAC+AGG | - | chr3_4:77241911-77241930 | None:intergenic | 30.0% | |
| !! | CTTTCGGTTTTTCTGAAAAT+TGG | - | chr3_4:77242097-77242116 | None:intergenic | 30.0% |
| ! | CAATTTTCAGAAAAACCGAA+AGG | + | chr3_4:77242095-77242114 | Msa0523780:CDS | 30.0% |
| ! | ATTTTCAGAAAAACCGAAAG+GGG | + | chr3_4:77242097-77242116 | Msa0523780:CDS | 30.0% |
| ATAACAAGAAAGCAGAAAGA+AGG | - | chr3_4:77242172-77242191 | None:intergenic | 30.0% | |
| TATCCTACATCTAATGACTT+CGG | + | chr3_4:77242379-77242398 | Msa0523780:CDS | 30.0% | |
| TTATTGGAATTCCTCTTACT+TGG | - | chr3_4:77242444-77242463 | None:intergenic | 30.0% | |
| !!! | GAAAATTTGTGTTGTTTTGC+AGG | + | chr3_4:77242516-77242535 | Msa0523780:intron | 30.0% |
| !! | GTTTTGCAGGCATATTTTTT+CGG | + | chr3_4:77242529-77242548 | Msa0523780:intron | 30.0% |
| !!! | ATATTTTTTCGGAGACTACT+GGG | + | chr3_4:77242540-77242559 | Msa0523780:CDS | 30.0% |
| GGATCATAAAACTGAAACTT+CGG | - | chr3_4:77242705-77242724 | None:intergenic | 30.0% | |
| GAAAGATCACGTTTAGATTA+TGG | + | chr3_4:77242959-77242978 | Msa0523780:CDS | 30.0% | |
| GGTGTTCTAACATAGATATT+TGG | - | chr3_4:77243028-77243047 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTTTGAACCAGGGT+TGG | - | chr3_4:77243049-77243068 | None:intergenic | 30.0% |
| GAACACACAATATTTGATCA+TGG | + | chr3_4:77243102-77243121 | Msa0523780:intron | 30.0% | |
| ACAAGTCACCATTTATTTGT+CGG | - | chr3_4:77243274-77243293 | None:intergenic | 30.0% | |
| ACCATTTAATAGAGTGTGTT+GGG | - | chr3_4:77243322-77243341 | None:intergenic | 30.0% | |
| TATTCCTTCCAATTCCAATT+GGG | - | chr3_4:77243455-77243474 | None:intergenic | 30.0% | |
| !! | TTGCTTGTTATCTTTGTCAA+AGG | + | chr3_4:77243567-77243586 | Msa0523780:intron | 30.0% |
| ATTGACAAGAATGCAAAGAT+TGG | + | chr3_4:77243599-77243618 | Msa0523780:CDS | 30.0% | |
| TTGACAAGAATGCAAAGATT+GGG | + | chr3_4:77243600-77243619 | Msa0523780:CDS | 30.0% | |
| TGGAGCTGTCATATAAATAA+TGG | + | chr3_4:77243817-77243836 | Msa0523780:exon | 30.0% | |
| !!! | CATTCTATTTTTACATGTGG+TGG | - | chr3_4:77243993-77244012 | None:intergenic | 30.0% |
| ! | GAAATGTTGTGTTGGGATTT+TGG | - | chr3_4:77240101-77240120 | None:intergenic | 35.0% |
| TTCACGAGAAATGTTGTGTT+GGG | - | chr3_4:77240108-77240127 | None:intergenic | 35.0% | |
| TTTCACGAGAAATGTTGTGT+TGG | - | chr3_4:77240109-77240128 | None:intergenic | 35.0% | |
| AACACAACATTTCTCGTGAA+AGG | + | chr3_4:77240108-77240127 | Msa0523780:five_prime_UTR | 35.0% | |
| ! | AATGATTAGAGTGGTGATGA+AGG | - | chr3_4:77240175-77240194 | None:intergenic | 35.0% |
| !! | AAAATGGGTGTTGGGTTTAA+CGG | - | chr3_4:77240328-77240347 | None:intergenic | 35.0% |
| GAATGAAATTGAGCTTACCA+AGG | - | chr3_4:77240511-77240530 | None:intergenic | 35.0% | |
| GGTAAGCTCAATTTCATTCT+AGG | + | chr3_4:77240512-77240531 | Msa0523780:intron | 35.0% | |
| TGCCTTCATTTATGAGACTA+AGG | + | chr3_4:77240686-77240705 | Msa0523780:CDS | 35.0% | |
| GCCTTCATTTATGAGACTAA+GGG | + | chr3_4:77240687-77240706 | Msa0523780:CDS | 35.0% | |
| GTAATTTCCATTGTATTGGG+AGG | + | chr3_4:77240724-77240743 | Msa0523780:intron | 35.0% | |
| TTAAGGGAATAAACTGGAGA+AGG | + | chr3_4:77240927-77240946 | Msa0523780:intron | 35.0% | |
| !!! | GTTTGTTTTAAGGTTCCTGT+TGG | + | chr3_4:77240972-77240991 | Msa0523780:intron | 35.0% |
| !!! | TTGTTTTAAGGTTCCTGTTG+GGG | + | chr3_4:77240974-77240993 | Msa0523780:intron | 35.0% |
| GTTGATGCCATTACCAAAAT+AGG | - | chr3_4:77241114-77241133 | None:intergenic | 35.0% | |
| !! | TTTGGTAATGGCATCAACTT+TGG | + | chr3_4:77241116-77241135 | Msa0523780:CDS | 35.0% |
| ATTCACCATCAGTAGATGTA+TGG | + | chr3_4:77241171-77241190 | Msa0523780:intron | 35.0% | |
| ACTTTCCATACATCTACTGA+TGG | - | chr3_4:77241179-77241198 | None:intergenic | 35.0% | |
| !!! | CTGAAGTTTTGTTTCTTTGG+AGG | - | chr3_4:77241286-77241305 | None:intergenic | 35.0% |
| TAAAGAAGCTCTTTCTTGGT+TGG | + | chr3_4:77241329-77241348 | Msa0523780:intron | 35.0% | |
| ! | AAATGGTAAATAGGTTCTGG+CGG | + | chr3_4:77241454-77241473 | Msa0523780:intron | 35.0% |
| TTTAGCTACCTCAAATATCC+AGG | - | chr3_4:77241549-77241568 | None:intergenic | 35.0% | |
| ! | CGAAAATGTATTGATCTTGG+CGG | + | chr3_4:77241689-77241708 | Msa0523780:CDS | 35.0% |
| ! | GAAAATGTATTGATCTTGGC+GGG | + | chr3_4:77241690-77241709 | Msa0523780:CDS | 35.0% |
| ! | AAAATGTATTGATCTTGGCG+GGG | + | chr3_4:77241691-77241710 | Msa0523780:CDS | 35.0% |
| TTACAATGTATACCTGCACA+AGG | - | chr3_4:77241746-77241765 | None:intergenic | 35.0% | |
| ! | AGAAAGAAGGTGCAAACATT+GGG | - | chr3_4:77242159-77242178 | None:intergenic | 35.0% |
| ! | CTTTCTGCTTTCTTGTTATC+TGG | + | chr3_4:77242173-77242192 | Msa0523780:intron | 35.0% |
| ! | GAGGATGGTCAATTCATTTT+TGG | - | chr3_4:77242230-77242249 | None:intergenic | 35.0% |
| ! | TATCTACTTGCTGCAAAATG+AGG | - | chr3_4:77242249-77242268 | None:intergenic | 35.0% |
| TCGCCATATATTGCATCTAT+GGG | + | chr3_4:77242307-77242326 | Msa0523780:CDS | 35.0% | |
| ! | TATAGCGGAAGGAATGATTT+CGG | - | chr3_4:77242407-77242426 | None:intergenic | 35.0% |
| AAATCATTCCTTCCGCTATA+AGG | + | chr3_4:77242407-77242426 | Msa0523780:CDS | 35.0% | |
| AATCATTCCTTCCGCTATAA+GGG | + | chr3_4:77242408-77242427 | Msa0523780:CDS | 35.0% | |
| !!! | CATATTTTTTCGGAGACTAC+TGG | + | chr3_4:77242539-77242558 | Msa0523780:CDS | 35.0% |
| AATCCAGGAGATGTGAAAAT+GGG | - | chr3_4:77242735-77242754 | None:intergenic | 35.0% | |
| GATAGATAAATTGTCGTACC+CGG | - | chr3_4:77242785-77242804 | None:intergenic | 35.0% | |
| !!! | GTCATGTGTTGCTTTGTTTT+TGG | + | chr3_4:77242861-77242880 | Msa0523780:intron | 35.0% |
| !!! | ATGTGTTGCTTTGTTTTTGG+TGG | + | chr3_4:77242864-77242883 | Msa0523780:intron | 35.0% |
| ACCCAACACACTCTATTAAA+TGG | + | chr3_4:77243318-77243337 | Msa0523780:intron | 35.0% | |
| GACCATTTAATAGAGTGTGT+TGG | - | chr3_4:77243323-77243342 | None:intergenic | 35.0% | |
| TTTACAGGACACTGTAATGA+TGG | + | chr3_4:77243371-77243390 | Msa0523780:intron | 35.0% | |
| TTACAGGACACTGTAATGAT+GGG | + | chr3_4:77243372-77243391 | Msa0523780:intron | 35.0% | |
| AAGAGAAGCAATTTCGGATT+CGG | - | chr3_4:77243415-77243434 | None:intergenic | 35.0% | |
| TGCAAGAAGAGAAGCAATTT+CGG | - | chr3_4:77243421-77243440 | None:intergenic | 35.0% | |
| GTATTCCTTCCAATTCCAAT+TGG | - | chr3_4:77243456-77243475 | None:intergenic | 35.0% | |
| !! | AAGGATGCACAAAAGTATTG+CGG | - | chr3_4:77243686-77243705 | None:intergenic | 35.0% |
| TGCATCCTTATAAACTCGAA+TGG | + | chr3_4:77243697-77243716 | Msa0523780:intron | 35.0% | |
| AACTCGAATGGTTTATCTGT+AGG | + | chr3_4:77243709-77243728 | Msa0523780:intron | 35.0% | |
| ACTCGAATGGTTTATCTGTA+GGG | + | chr3_4:77243710-77243729 | Msa0523780:intron | 35.0% | |
| GGTATGTTGAATAGAGAAAG+CGG | + | chr3_4:77243945-77243964 | Msa0523780:three_prime_UTR | 35.0% | |
| !! | TTTTAACTGGTGGTGTGATA+AGG | + | chr3_4:77244158-77244177 | Msa0523780:three_prime_UTR | 35.0% |
| AAGTATCATAGACCGATAGA+CGG | + | chr3_4:77244202-77244221 | Msa0523780:three_prime_UTR | 35.0% | |
| ! | TCTGGCTCATACTTCCATAA+AGG | + | chr3_4:77240138-77240157 | Msa0523780:five_prime_UTR | 40.0% |
| AGGAAAGGAAGTTGCCTTTA+TGG | - | chr3_4:77240155-77240174 | None:intergenic | 40.0% | |
| ! | TTAGAGTGGTGATGAAGGAA+AGG | - | chr3_4:77240170-77240189 | None:intergenic | 40.0% |
| GTTTCTTGAGATCACTGCAA+TGG | + | chr3_4:77240287-77240306 | Msa0523780:exon | 40.0% | |
| AAGCTTCAACAACAGTTCCT+GGG | + | chr3_4:77240392-77240411 | Msa0523780:CDS | 40.0% | |
| CAGCATGTTTGATCTTCTTC+GGG | - | chr3_4:77240449-77240468 | None:intergenic | 40.0% | |
| GCAGCATGTTTGATCTTCTT+CGG | - | chr3_4:77240450-77240469 | None:intergenic | 40.0% | |
| CTTACTTCAGATGATCCCAA+AGG | + | chr3_4:77240483-77240502 | Msa0523780:CDS | 40.0% | |
| GCCCTTAGTCTCATAAATGA+AGG | - | chr3_4:77240691-77240710 | None:intergenic | 40.0% | |
| ATTTCCATTGTATTGGGAGG+AGG | + | chr3_4:77240727-77240746 | Msa0523780:intron | 40.0% | |
| ATCATGATAGTCACTTACCG+CGG | - | chr3_4:77240797-77240816 | None:intergenic | 40.0% | |
| !!! | TGTTTTAAGGTTCCTGTTGG+GGG | + | chr3_4:77240975-77240994 | Msa0523780:intron | 40.0% |
| TGCCATTACCAAAATAGGTG+CGG | - | chr3_4:77241109-77241128 | None:intergenic | 40.0% | |
| AATGGCATCAACTTTGGTGA+TGG | + | chr3_4:77241122-77241141 | Msa0523780:CDS | 40.0% | |
| ! | CTACTGATGGTGAATTGTGA+TGG | - | chr3_4:77241166-77241185 | None:intergenic | 40.0% |
| TGGTCAACAAGAATCTCTTC+CGG | - | chr3_4:77241389-77241408 | None:intergenic | 40.0% | |
| ATGCTGTGAGACAATTTACC+TGG | + | chr3_4:77241528-77241547 | Msa0523780:CDS | 40.0% | |
| ! | AAATGTATTGATCTTGGCGG+GGG | + | chr3_4:77241692-77241711 | Msa0523780:CDS | 40.0% |
| CAAGGTCCATGTAATCCATT+CGG | - | chr3_4:77241728-77241747 | None:intergenic | 40.0% | |
| !! | ATCAGATTACGGATTGGTCA+AGG | + | chr3_4:77242049-77242068 | Msa0523780:CDS | 40.0% |
| ! | CAGAAAGAAGGTGCAAACAT+TGG | - | chr3_4:77242160-77242179 | None:intergenic | 40.0% |
| ! | TACTTGCTGCAAAATGAGGA+TGG | - | chr3_4:77242245-77242264 | None:intergenic | 40.0% |
| AAGTAGATACCTCTCGTCTT+GGG | + | chr3_4:77242260-77242279 | Msa0523780:CDS | 40.0% | |
| CTCGCCATATATTGCATCTA+TGG | + | chr3_4:77242306-77242325 | Msa0523780:CDS | 40.0% | |
| CGCCATATATTGCATCTATG+GGG | + | chr3_4:77242308-77242327 | Msa0523780:CDS | 40.0% | |
| GCCATATATTGCATCTATGG+GGG | + | chr3_4:77242309-77242328 | Msa0523780:CDS | 40.0% | |
| ACCCCCATAGATGCAATATA+TGG | - | chr3_4:77242313-77242332 | None:intergenic | 40.0% | |
| GATCCGAAGTCATTAGATGT+AGG | - | chr3_4:77242385-77242404 | None:intergenic | 40.0% | |
| GACATTGTGTTCCCTTATAG+CGG | - | chr3_4:77242422-77242441 | None:intergenic | 40.0% | |
| GAACACAATGTCCAAGTAAG+AGG | + | chr3_4:77242430-77242449 | Msa0523780:intron | 40.0% | |
| ! | TCTCATTGCTCCTTCTGAAA+TGG | - | chr3_4:77242498-77242517 | None:intergenic | 40.0% |
| AGCAAGGTTAGCATCGTAAA+AGG | - | chr3_4:77242587-77242606 | None:intergenic | 40.0% | |
| TAACCTTGCTCTTACCAAAG+AGG | + | chr3_4:77242597-77242616 | Msa0523780:CDS | 40.0% | |
| ATTTCTTGCACCTACCTCTT+TGG | - | chr3_4:77242614-77242633 | None:intergenic | 40.0% | |
| AGGTAGGTGCAAGAAATTGT+CGG | + | chr3_4:77242617-77242636 | Msa0523780:intron | 40.0% | |
| TCTGCATGAGAGTAGCATAA+AGG | - | chr3_4:77242680-77242699 | None:intergenic | 40.0% | |
| GATGTGAAAATGGGTGTCTT+GGG | - | chr3_4:77242726-77242745 | None:intergenic | 40.0% | |
| AGATGTGAAAATGGGTGTCT+TGG | - | chr3_4:77242727-77242746 | None:intergenic | 40.0% | |
| GAATCCAGGAGATGTGAAAA+TGG | - | chr3_4:77242736-77242755 | None:intergenic | 40.0% | |
| !! | TGTCAATCTTTGTTGGTGGT+AGG | - | chr3_4:77242758-77242777 | None:intergenic | 40.0% |
| CAGTTGTCAATCTTTGTTGG+TGG | - | chr3_4:77242762-77242781 | None:intergenic | 40.0% | |
| CAACAAAGATTGACAACTGC+CGG | + | chr3_4:77242763-77242782 | Msa0523780:CDS | 40.0% | |
| AACAAAGATTGACAACTGCC+GGG | + | chr3_4:77242764-77242783 | Msa0523780:CDS | 40.0% | |
| !!! | GTTGCTTTGTTTTTGGTGGT+AGG | + | chr3_4:77242868-77242887 | Msa0523780:intron | 40.0% |
| !!! | TTGTTTTTGGTGGTAGGTTG+TGG | + | chr3_4:77242874-77242893 | Msa0523780:intron | 40.0% |
| GAAACATCCATGGGAGATAA+TGG | - | chr3_4:77242903-77242922 | None:intergenic | 40.0% | |
| TTCTCTCAGGAAACATCCAT+GGG | - | chr3_4:77242912-77242931 | None:intergenic | 40.0% | |
| ATTCTCTCAGGAAACATCCA+TGG | - | chr3_4:77242913-77242932 | None:intergenic | 40.0% | |
| GTTGAATCGTACATTCTCTC+AGG | - | chr3_4:77242925-77242944 | None:intergenic | 40.0% | |
| TACGATTCAACACTCCATTG+TGG | + | chr3_4:77242934-77242953 | Msa0523780:CDS | 40.0% | |
| ACGATTCAACACTCCATTGT+GGG | + | chr3_4:77242935-77242954 | Msa0523780:CDS | 40.0% | |
| ! | AAGCAATTTCGGATTCGGTT+TGG | - | chr3_4:77243410-77243429 | None:intergenic | 40.0% |
| AATTGCTTCTCTTCTTGCAG+AGG | + | chr3_4:77243422-77243441 | Msa0523780:CDS | 40.0% | |
| ATTGCTTCTCTTCTTGCAGA+GGG | + | chr3_4:77243423-77243442 | Msa0523780:CDS | 40.0% | |
| AAGCAGATAGACCAGAAGAT+GGG | + | chr3_4:77243741-77243760 | Msa0523780:CDS | 40.0% | |
| ! | AATCACAGTCGTAATGGAGA+AGG | + | chr3_4:77243781-77243800 | Msa0523780:CDS | 40.0% |
| ! | TTAGTGGCTATTTCATGAGC+TGG | + | chr3_4:77243840-77243859 | Msa0523780:three_prime_UTR | 40.0% |
| GTATGGTGACTGTTGCAAAA+TGG | + | chr3_4:77243924-77243943 | Msa0523780:three_prime_UTR | 40.0% | |
| GAAAGCGGCATGTGTAAAAT+AGG | + | chr3_4:77243960-77243979 | Msa0523780:three_prime_UTR | 40.0% | |
| ATGGTAACTTCATAGCTCAC+AGG | - | chr3_4:77244072-77244091 | None:intergenic | 40.0% | |
| TCTATGATACTTGGAGCAAC+AGG | - | chr3_4:77244194-77244213 | None:intergenic | 40.0% | |
| GTCTATCGGTCTATGATACT+TGG | - | chr3_4:77244203-77244222 | None:intergenic | 40.0% | |
| AGTATCATAGACCGATAGAC+GGG | + | chr3_4:77244203-77244222 | Msa0523780:three_prime_UTR | 40.0% | |
| GTAATACTATGCCCGTCTAT+CGG | - | chr3_4:77244217-77244236 | None:intergenic | 40.0% | |
| CATTTCTCGTGAAAGGAGAG+AGG | + | chr3_4:77240115-77240134 | Msa0523780:five_prime_UTR | 45.0% | |
| GAAGCTTCAACAACAGTTCC+TGG | + | chr3_4:77240391-77240410 | Msa0523780:CDS | 45.0% | |
| AGATGATCCCAAAGGTTCCT+TGG | + | chr3_4:77240491-77240510 | Msa0523780:CDS | 45.0% | |
| GAGCTTACCAAGGAACCTTT+GGG | - | chr3_4:77240501-77240520 | None:intergenic | 45.0% | |
| TGAGCTTACCAAGGAACCTT+TGG | - | chr3_4:77240502-77240521 | None:intergenic | 45.0% | |
| AGAGGATATAGATGTGTCCC+TGG | - | chr3_4:77240754-77240773 | None:intergenic | 45.0% | |
| TCATGATAGTCACTTACCGC+GGG | - | chr3_4:77240796-77240815 | None:intergenic | 45.0% | |
| TCAATTCTGCTTCCCTCAAC+CGG | + | chr3_4:77241075-77241094 | Msa0523780:CDS | 45.0% | |
| GCCATTACCAAAATAGGTGC+GGG | - | chr3_4:77241108-77241127 | None:intergenic | 45.0% | |
| !! | CTTTGGTGATGGATTTGTCG+AGG | + | chr3_4:77241133-77241152 | Msa0523780:CDS | 45.0% |
| TCAACAAGAATCTCTTCCGG+TGG | - | chr3_4:77241386-77241405 | None:intergenic | 45.0% | |
| GCGGGAAATAAGTGGTTTCA+AGG | + | chr3_4:77241497-77241516 | Msa0523780:CDS | 45.0% | |
| GGGGGATCATTTATACCGAA+TGG | + | chr3_4:77241710-77241729 | Msa0523780:CDS | 45.0% | |
| ! | TACAATTTCGTGTGCTGCTG+TGG | + | chr3_4:77241865-77241884 | Msa0523780:CDS | 45.0% |
| ! | ACAATTTCGTGTGCTGCTGT+GGG | + | chr3_4:77241866-77241885 | Msa0523780:CDS | 45.0% |
| TTCAGCCGTGCATCAGATTA+CGG | + | chr3_4:77242038-77242057 | Msa0523780:intron | 45.0% | |
| CCAATCCGTAATCTGATGCA+CGG | - | chr3_4:77242046-77242065 | None:intergenic | 45.0% | |
| CAAGTAGATACCTCTCGTCT+TGG | + | chr3_4:77242259-77242278 | Msa0523780:CDS | 45.0% | |
| ! | TTGTGTTCCCTTATAGCGGA+AGG | - | chr3_4:77242418-77242437 | None:intergenic | 45.0% |
| GGAGACTACTGGGAAGATAT+TGG | + | chr3_4:77242550-77242569 | Msa0523780:CDS | 45.0% | |
| CTACCTCTTTGGTAAGAGCA+AGG | - | chr3_4:77242603-77242622 | None:intergenic | 45.0% | |
| CTTGCTCTTACCAAAGAGGT+AGG | + | chr3_4:77242601-77242620 | Msa0523780:intron | 45.0% | |
| ! | ACACCCATTTTCACATCTCC+TGG | + | chr3_4:77242729-77242748 | Msa0523780:CDS | 45.0% |
| !! | TTTGTTGGTGGTAGGAATCC+AGG | - | chr3_4:77242750-77242769 | None:intergenic | 45.0% |
| CGGCAGTTGTCAATCTTTGT+TGG | - | chr3_4:77242765-77242784 | None:intergenic | 45.0% | |
| ACGTGATCTTTCACCCACAA+TGG | - | chr3_4:77242951-77242970 | None:intergenic | 45.0% | |
| ! | AGATTATGGCGTTGAGCTTC+AGG | + | chr3_4:77242973-77242992 | Msa0523780:intron | 45.0% |
| CTATGTTAGAACACCAACCC+TGG | + | chr3_4:77243033-77243052 | Msa0523780:intron | 45.0% | |
| GTCAGAGACGTAGGAACAAT+TGG | - | chr3_4:77243135-77243154 | None:intergenic | 45.0% | |
| !! | CACTCTAAAGTCAGAGACGT+AGG | - | chr3_4:77243144-77243163 | None:intergenic | 45.0% |
| ! | CTACGTCTCTGACTTTAGAG+TGG | + | chr3_4:77243142-77243161 | Msa0523780:intron | 45.0% |
| ACCATTTATTTGTCGGCCTG+CGG | - | chr3_4:77243267-77243286 | None:intergenic | 45.0% | |
| TTCTCTTCTTGCAGAGGGAA+AGG | + | chr3_4:77243428-77243447 | Msa0523780:CDS | 45.0% | |
| GGAAAGGTCCCAATTGGAAT+TGG | + | chr3_4:77243444-77243463 | Msa0523780:CDS | 45.0% | |
| AGGTCCCAATTGGAATTGGA+AGG | + | chr3_4:77243448-77243467 | Msa0523780:CDS | 45.0% | |
| GAAGCAGATAGACCAGAAGA+TGG | + | chr3_4:77243740-77243759 | Msa0523780:CDS | 45.0% | |
| TTACGACTGTGATTCCTGCT+CGG | - | chr3_4:77243775-77243794 | None:intergenic | 45.0% | |
| AGCAGGAATCACAGTCGTAA+TGG | + | chr3_4:77243775-77243794 | Msa0523780:CDS | 45.0% | |
| GAGAAGGCAACGATAGAAGA+TGG | + | chr3_4:77243797-77243816 | Msa0523780:CDS | 45.0% | |
| ! | TTCATGAGCTGGTTTCTCTG+AGG | + | chr3_4:77243851-77243870 | Msa0523780:three_prime_UTR | 45.0% |
| !!! | TAATTATTTTTATATACTTT+GGG | - | chr3_4:77240852-77240871 | None:intergenic | 5.0% |
| !! | TTATTAAAATTATATACTTA+AGG | + | chr3_4:77240910-77240929 | Msa0523780:intron | 5.0% |
| !! | TATTAAAATTATATACTTAA+GGG | + | chr3_4:77240911-77240930 | Msa0523780:intron | 5.0% |
| !!! | AATTTTATTTATAGAAAATA+CGG | - | chr3_4:77241604-77241623 | None:intergenic | 5.0% |
| !!! | TTATTAATTTAATTTTTAAC+TGG | + | chr3_4:77244145-77244164 | Msa0523780:three_prime_UTR | 5.0% |
| GAGATCACTGCAATGGCTTC+TGG | + | chr3_4:77240294-77240313 | Msa0523780:exon | 50.0% | |
| CAACAACAGTTCCTGGGTCA+CGG | + | chr3_4:77240398-77240417 | Msa0523780:CDS | 50.0% | |
| ATTCAACTGATCCGTGACCC+AGG | - | chr3_4:77240412-77240431 | None:intergenic | 50.0% | |
| TGGTCCTCCTCCCAATACAA+TGG | - | chr3_4:77240734-77240753 | None:intergenic | 50.0% | |
| ATTGTATTGGGAGGAGGACC+AGG | + | chr3_4:77240733-77240752 | Msa0523780:intron | 50.0% | |
| TTGTATTGGGAGGAGGACCA+GGG | + | chr3_4:77240734-77240753 | Msa0523780:intron | 50.0% | |
| TTCCTGTTGGGGGATGCTAT+AGG | + | chr3_4:77240985-77241004 | Msa0523780:intron | 50.0% | |
| ! | CATATCGCCCGCACCTATTT+TGG | + | chr3_4:77241098-77241117 | Msa0523780:CDS | 50.0% |
| !!! | GCCCGCACCTATTTTGGTAA+TGG | + | chr3_4:77241104-77241123 | Msa0523780:CDS | 50.0% |
| GACACAAACACCAGGAGAAG+CGG | + | chr3_4:77241478-77241497 | Msa0523780:CDS | 50.0% | |
| ACACAAACACCAGGAGAAGC+GGG | + | chr3_4:77241479-77241498 | Msa0523780:CDS | 50.0% | |
| CACTTATTTCCCGCTTCTCC+TGG | - | chr3_4:77241491-77241510 | None:intergenic | 50.0% | |
| CAGGAGAAGCGGGAAATAAG+TGG | + | chr3_4:77241489-77241508 | Msa0523780:CDS | 50.0% | |
| GGATTACATGGACCTTGTGC+AGG | + | chr3_4:77241731-77241750 | Msa0523780:CDS | 50.0% | |
| CCGTGCATCAGATTACGGAT+TGG | + | chr3_4:77242043-77242062 | Msa0523780:CDS | 50.0% | |
| TTGGTCAAGGTAGACGAGAG+AGG | + | chr3_4:77242062-77242081 | Msa0523780:CDS | 50.0% | |
| GCTTTCAGATCAGCCCCTTT+CGG | - | chr3_4:77242113-77242132 | None:intergenic | 50.0% | |
| AGGGGCTGATCTGAAAGCAA+TGG | + | chr3_4:77242115-77242134 | Msa0523780:CDS | 50.0% | |
| GGCGAGTTCAATGCATCTTG+TGG | - | chr3_4:77242292-77242311 | None:intergenic | 50.0% | |
| GTGGATGCCATTATCTCCCA+TGG | + | chr3_4:77242893-77242912 | Msa0523780:CDS | 50.0% | |
| ATTTATTTGTCGGCCTGCGG+GGG | - | chr3_4:77243264-77243283 | None:intergenic | 50.0% | |
| CATTTATTTGTCGGCCTGCG+GGG | - | chr3_4:77243265-77243284 | None:intergenic | 50.0% | |
| CCATTTATTTGTCGGCCTGC+GGG | - | chr3_4:77243266-77243285 | None:intergenic | 50.0% | |
| CGGATGTAGAACCCATCTTC+TGG | - | chr3_4:77243755-77243774 | None:intergenic | 50.0% | |
| CACTTGCAAGGGAGAGGATA+TGG | - | chr3_4:77244091-77244110 | None:intergenic | 50.0% | |
| GGTGTCCTTTGCACTTGCAA+GGG | - | chr3_4:77244102-77244121 | None:intergenic | 50.0% | |
| AGGTGTCCTTTGCACTTGCA+AGG | - | chr3_4:77244103-77244122 | None:intergenic | 50.0% | |
| CGGGCATAGTATTACTCAGC+AGG | + | chr3_4:77244222-77244241 | Msa0523780:three_prime_UTR | 50.0% | |
| CTCGTGAAAGGAGAGAGGTC+TGG | + | chr3_4:77240120-77240139 | Msa0523780:five_prime_UTR | 55.0% | |
| ! | GTTGCAGCTCGTTTGGTGAG+AGG | - | chr3_4:77240772-77240791 | None:intergenic | 55.0% |
| AGCCTATAGCATCCCCCAAC+AGG | - | chr3_4:77240990-77241009 | None:intergenic | 55.0% | |
| AATAGGTGCGGGCGATATGC+CGG | - | chr3_4:77241097-77241116 | None:intergenic | 55.0% | |
| CTGATGCACGGCTGAAAAGC+AGG | - | chr3_4:77242034-77242053 | None:intergenic | 55.0% | |
| ACCTTGAGCTGTACCGCATG+AGG | + | chr3_4:77243232-77243251 | Msa0523780:intron | 55.0% | |
| CCTTGAGCTGTACCGCATGA+GGG | + | chr3_4:77243233-77243252 | Msa0523780:intron | 55.0% | |
| CCCGCAGGCCGACAAATAAA+TGG | + | chr3_4:77243263-77243282 | Msa0523780:intron | 55.0% | |
| GCAGAGGGAAAGGTCCCAAT+TGG | + | chr3_4:77243438-77243457 | Msa0523780:CDS | 55.0% | |
| ! | GATGGGTTCTACATCCGAGC+AGG | + | chr3_4:77243758-77243777 | Msa0523780:CDS | 55.0% |
| !! | AGCTGGTTTCTCTGAGGCGT+CGG | + | chr3_4:77243857-77243876 | Msa0523780:three_prime_UTR | 55.0% |
| AACACTCCCTCCCGCATCTT+TGG | + | chr3_4:77243896-77243915 | Msa0523780:three_prime_UTR | 55.0% | |
| ACACTCCCTCCCGCATCTTT+GGG | + | chr3_4:77243897-77243916 | Msa0523780:three_prime_UTR | 55.0% | |
| CATACCTCCCCCAAAGATGC+GGG | - | chr3_4:77243909-77243928 | None:intergenic | 55.0% | |
| CCATACCTCCCCCAAAGATG+CGG | - | chr3_4:77243910-77243929 | None:intergenic | 55.0% | |
| CCTTTGCACTTGCAAGGGAG+AGG | - | chr3_4:77244097-77244116 | None:intergenic | 55.0% | |
| CCTCTCCCTTGCAAGTGCAA+AGG | + | chr3_4:77244094-77244113 | Msa0523780:three_prime_UTR | 55.0% | |
| CAAACGAGCTGCAACACCCG+CGG | + | chr3_4:77240777-77240796 | Msa0523780:intron | 60.0% | |
| TGGCGACAACCCAAGACGAG+AGG | - | chr3_4:77242272-77242291 | None:intergenic | 60.0% | |
| CCCTCATGCGGTACAGCTCA+AGG | - | chr3_4:77243236-77243255 | None:intergenic | 60.0% | |
| !! | TGGTTTCTCTGAGGCGTCGG+AGG | + | chr3_4:77243860-77243879 | Msa0523780:three_prime_UTR | 60.0% |
| CACTCCCTCCCGCATCTTTG+GGG | + | chr3_4:77243898-77243917 | Msa0523780:three_prime_UTR | 60.0% | |
| ACTCCCTCCCGCATCTTTGG+GGG | + | chr3_4:77243899-77243918 | Msa0523780:three_prime_UTR | 60.0% | |
| ! | CCGCATCTTTGGGGGAGGTA+TGG | + | chr3_4:77243907-77243926 | Msa0523780:three_prime_UTR | 60.0% |
| ! | CGCGGGTGTTGCAGCTCGTT+TGG | - | chr3_4:77240779-77240798 | None:intergenic | 65.0% |
| ! | GCGGGCGATATGCCGGTTGA+GGG | - | chr3_4:77241090-77241109 | None:intergenic | 65.0% |
| ! | TGCGGGCGATATGCCGGTTG+AGG | - | chr3_4:77241091-77241110 | None:intergenic | 65.0% |
| CTGGCGGCGACACAAACACC+AGG | + | chr3_4:77241470-77241489 | Msa0523780:CDS | 65.0% | |
| ! | CGTGTGCTGCTGTGGGTGAC+AGG | + | chr3_4:77241873-77241892 | Msa0523780:CDS | 65.0% |
| !! | GCGTCGGAGGAAGCATTGCG+AGG | + | chr3_4:77243873-77243892 | Msa0523780:three_prime_UTR | 65.0% |
| CCTCCCCCAAAGATGCGGGA+GGG | - | chr3_4:77243905-77243924 | None:intergenic | 65.0% | |
| ACCTCCCCCAAAGATGCGGG+AGG | - | chr3_4:77243906-77243925 | None:intergenic | 65.0% | |
| ! | CCCTCCCGCATCTTTGGGGG+AGG | + | chr3_4:77243902-77243921 | Msa0523780:three_prime_UTR | 70.0% |
| GCGGGGGACGAGCCCTCATG+CGG | - | chr3_4:77243248-77243267 | None:intergenic | 75.0% | |
| CATGAGGGCTCGTCCCCCGC+AGG | + | chr3_4:77243248-77243267 | Msa0523780:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 77240012 | 77244268 | 77240012 | ID=Msa0523780;Name=Msa0523780 |
| chr3_4 | mRNA | 77240012 | 77244268 | 77240012 | ID=Msa0523780-mRNA-1;Parent=Msa0523780;Name=Msa0523780-mRNA-1;_AED=0.11;_eAED=0.11;_QI=294|0.84|0.78|1|0.84|0.85|14|436|459 |
| chr3_4 | exon | 77240012 | 77240512 | 77240012 | ID=Msa0523780-mRNA-1:exon:22567;Parent=Msa0523780-mRNA-1 |
| chr3_4 | exon | 77240676 | 77240723 | 77240676 | ID=Msa0523780-mRNA-1:exon:22568;Parent=Msa0523780-mRNA-1 |
| chr3_4 | exon | 77241074 | 77241154 | 77241074 | ID=Msa0523780-mRNA-1:exon:22569;Parent=Msa0523780-mRNA-1 |
| chr3_4 | exon | 77241467 | 77241559 | 77241467 | ID=Msa0523780-mRNA-1:exon:22570;Parent=Msa0523780-mRNA-1 |
| chr3_4 | exon | 77241669 | 77241752 | 77241669 | ID=Msa0523780-mRNA-1:exon:22571;Parent=Msa0523780-mRNA-1 |
| chr3_4 | exon | 77241839 | 77241894 | 77241839 | ID=Msa0523780-mRNA-1:exon:22572;Parent=Msa0523780-mRNA-1 |
| chr3_4 | exon | 77242043 | 77242136 | 77242043 | ID=Msa0523780-mRNA-1:exon:22573;Parent=Msa0523780-mRNA-1 |
| chr3_4 | exon | 77242259 | 77242444 | 77242259 | ID=Msa0523780-mRNA-1:exon:22574;Parent=Msa0523780-mRNA-1 |
| chr3_4 | exon | 77242538 | 77242618 | 77242538 | ID=Msa0523780-mRNA-1:exon:22575;Parent=Msa0523780-mRNA-1 |
| chr3_4 | exon | 77242699 | 77242785 | 77242699 | ID=Msa0523780-mRNA-1:exon:22576;Parent=Msa0523780-mRNA-1 |
| chr3_4 | exon | 77242890 | 77242982 | 77242890 | ID=Msa0523780-mRNA-1:exon:22577;Parent=Msa0523780-mRNA-1 |
| chr3_4 | exon | 77243378 | 77243484 | 77243378 | ID=Msa0523780-mRNA-1:exon:22578;Parent=Msa0523780-mRNA-1 |
| chr3_4 | exon | 77243589 | 77243649 | 77243589 | ID=Msa0523780-mRNA-1:exon:22579;Parent=Msa0523780-mRNA-1 |
| chr3_4 | exon | 77243731 | 77244268 | 77243731 | ID=Msa0523780-mRNA-1:exon:22580;Parent=Msa0523780-mRNA-1 |
| chr3_4 | five_prime_UTR | 77240012 | 77240305 | 77240012 | ID=Msa0523780-mRNA-1:five_prime_utr;Parent=Msa0523780-mRNA-1 |
| chr3_4 | CDS | 77240306 | 77240512 | 77240306 | ID=Msa0523780-mRNA-1:cds;Parent=Msa0523780-mRNA-1 |
| chr3_4 | CDS | 77240676 | 77240723 | 77240676 | ID=Msa0523780-mRNA-1:cds;Parent=Msa0523780-mRNA-1 |
| chr3_4 | CDS | 77241074 | 77241154 | 77241074 | ID=Msa0523780-mRNA-1:cds;Parent=Msa0523780-mRNA-1 |
| chr3_4 | CDS | 77241467 | 77241559 | 77241467 | ID=Msa0523780-mRNA-1:cds;Parent=Msa0523780-mRNA-1 |
| chr3_4 | CDS | 77241669 | 77241752 | 77241669 | ID=Msa0523780-mRNA-1:cds;Parent=Msa0523780-mRNA-1 |
| chr3_4 | CDS | 77241839 | 77241894 | 77241839 | ID=Msa0523780-mRNA-1:cds;Parent=Msa0523780-mRNA-1 |
| chr3_4 | CDS | 77242043 | 77242136 | 77242043 | ID=Msa0523780-mRNA-1:cds;Parent=Msa0523780-mRNA-1 |
| chr3_4 | CDS | 77242259 | 77242444 | 77242259 | ID=Msa0523780-mRNA-1:cds;Parent=Msa0523780-mRNA-1 |
| chr3_4 | CDS | 77242538 | 77242618 | 77242538 | ID=Msa0523780-mRNA-1:cds;Parent=Msa0523780-mRNA-1 |
| chr3_4 | CDS | 77242699 | 77242785 | 77242699 | ID=Msa0523780-mRNA-1:cds;Parent=Msa0523780-mRNA-1 |
| chr3_4 | CDS | 77242890 | 77242982 | 77242890 | ID=Msa0523780-mRNA-1:cds;Parent=Msa0523780-mRNA-1 |
| chr3_4 | CDS | 77243378 | 77243484 | 77243378 | ID=Msa0523780-mRNA-1:cds;Parent=Msa0523780-mRNA-1 |
| chr3_4 | CDS | 77243589 | 77243649 | 77243589 | ID=Msa0523780-mRNA-1:cds;Parent=Msa0523780-mRNA-1 |
| chr3_4 | CDS | 77243731 | 77243832 | 77243731 | ID=Msa0523780-mRNA-1:cds;Parent=Msa0523780-mRNA-1 |
| chr3_4 | three_prime_UTR | 77243833 | 77244268 | 77243833 | ID=Msa0523780-mRNA-1:three_prime_utr;Parent=Msa0523780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
