AlfalfaGEDB | Msa0658570

M. sativa cultivar zhongmu-4 / Msa0658570

KEGG: K09338
GO: GO:0000003 GO:0001101 GO:0001558 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030308 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0040008 GO:0040034 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045926 GO:0045935 GO:0046983 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0658570	XP_013446755.1	97.756	312	6	1	1	312	1	311	0.0	622

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0658570	sp\|P46668\|ATHB6_ARATH	47.093	344	116	12	1	312	2	311	3.28e-81	251

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0658570	TF	HB-HD-ZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000550	Msa0658570	-0.847772	9.359547e-60	-8.615850e-47
Msa0001590	Msa0658570	0.801240	9.884691e-49	-8.615850e-47
Msa0003300	Msa0658570	0.835462	1.654693e-56	-8.615850e-47
Msa0004790	Msa0658570	-0.842797	2.076136e-58	-8.615850e-47
Msa0007080	Msa0658570	0.863657	2.129582e-64	-8.615850e-47
Msa0007230	Msa0658570	0.813141	2.974845e-51	-8.615850e-47
Msa0008290	Msa0658570	0.802824	4.671297e-49	-8.615850e-47
Msa0011170	Msa0658570	0.803564	3.281861e-49	-8.615850e-47
Msa0012060	Msa0658570	0.811353	7.303770e-51	-8.615850e-47
Msa0014710	Msa0658570	0.820911	5.339147e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0658570	MtrunA17_Chr8g0381741	97.756	312	6	1	1	312	1	311	0.0	622
Msa0658570	MtrunA17_Chr3g0123691	59.756	328	88	11	1	311	1	301	4.78e-109	319
Msa0658570	MtrunA17_Chr3g0119291	38.871	319	115	7	1	303	1	255	9.45e-60	191
Msa0658570	MtrunA17_Chr8g0362751	47.059	187	76	4	45	226	81	249	3.27e-41	144
Msa0658570	MtrunA17_Chr5g0415941	66.667	108	35	1	43	150	77	183	8.20e-41	144
Msa0658570	MtrunA17_Chr5g0416391	45.455	176	87	3	40	208	65	238	7.88e-39	138
Msa0658570	MtrunA17_Chr6g0453021	61.682	107	40	1	43	149	86	191	2.25e-38	137
Msa0658570	MtrunA17_Chr6g0450991	61.111	108	42	0	53	160	66	173	2.50e-38	137
Msa0658570	MtrunA17_Chr8g0362151	58.407	113	45	1	37	149	62	172	1.26e-37	135
Msa0658570	MtrunA17_Chr4g0060031	54.400	125	56	1	26	150	68	191	2.23e-34	128

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0658570	AT2G22430.1	47.093	344	116	12	1	312	2	311	3.33e-82	251
Msa0658570	AT4G40060.1	44.144	333	124	12	1	311	1	293	3.18e-76	235
Msa0658570	AT5G65310.1	42.566	343	134	16	1	312	1	311	5.48e-65	207
Msa0658570	AT5G65310.2	43.377	302	116	12	34	312	24	293	5.85e-62	199
Msa0658570	AT3G01470.1	47.097	155	72	1	53	197	67	221	3.43e-38	136
Msa0658570	AT1G69780.1	58.559	111	46	0	52	162	83	193	6.40e-38	136
Msa0658570	AT3G01220.1	56.364	110	48	0	40	149	73	182	4.61e-36	131
Msa0658570	AT5G15150.1	41.148	209	101	7	1	209	69	255	6.87e-36	132
Msa0658570	AT1G26960.1	56.757	111	48	0	52	162	69	179	6.92e-34	125
Msa0658570	AT2G46680.1	50.400	125	60	1	55	177	33	157	5.17e-32	120

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Find 122 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAGCTTGAACCAGAT+AGG	0.540809	4_3:+68720981	Msa0658570:CDS
AAAATAAGGGTATTGTTAAC+CGG	0.388891	4_3:+68722643	Msa0658570:three_prime_UTR
AAACAATTGGAAAGAGATTA+TGG	0.321657	4_3:+68721088	Msa0658570:CDS
AAAGCAAAGTTAAAACTCTT+GGG	0.374481	4_3:-68722507	None:intergenic
AACAACCACCAACGCTTCAA+TGG	0.458388	4_3:+68721977	Msa0658570:CDS
AACCAAACAGCAACCTGTCT+TGG	0.475030	4_3:-68721037	None:intergenic
AACCAAGACAGGTTGCTGTT+TGG	0.456352	4_3:+68721035	Msa0658570:CDS
AACGCAGCAATTTCTTCATC+TGG	0.309720	4_3:+68721772	Msa0658570:CDS
AACTACTATGCAAGAGGTAA+AGG	0.489264	4_3:-68722376	None:intergenic
AACTTCAAGGAAGAAGAACC+AGG	0.601960	4_3:-68721826	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAACAAAGGTAGACACA+TGG	+	chr4_3:68720058-68720077	Msa0658570:five_prime_UTR	30.0%
AAAAACAAAGGTAGACACAT+GGG	+	chr4_3:68720059-68720078	Msa0658570:five_prime_UTR	30.0%
GCTTAAACAATTGTGCTAAT+TGG	+	chr4_3:68720114-68720133	Msa0658570:five_prime_UTR	30.0%
AGATCTGAAGAGAGAAAAAA+AGG	-	chr4_3:68720206-68720225	None:intergenic	30.0%
AGTGTATTAGATATTCAAGG+GGG	-	chr4_3:68721304-68721323	None:intergenic	30.0%
AATATCTAATACACTAAGGG+CGG	+	chr4_3:68721309-68721328	Msa0658570:intron	30.0%
AATCTCTTTGCATATAATGC+TGG	+	chr4_3:68721337-68721356	Msa0658570:intron	30.0%
ATTGCAAGAATCAGAAAACA+CGG	+	chr4_3:68721597-68721616	Msa0658570:CDS	30.0%
GTAGTTTAAGTCCTTAGAAT+CGG	-	chr4_3:68721650-68721669	None:intergenic	30.0%
AAGCAATTACTCATAGAAGA+CGG	-	chr4_3:68721877-68721896	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	68719810	68722756	68719810	ID=Msa0658570;Name=Msa0658570
chr4_3	mRNA	68719810	68722756	68719810	ID=Msa0658570-mRNA-1;Parent=Msa0658570;Name=Msa0658570-mRNA-1;_AED=0.01;_eAED=0.01;_QI=474\|1\|1\|1\|1\|1\|3\|733\|312
chr4_3	exon	68719810	68720344	68719810	ID=Msa0658570-mRNA-1:exon:19963;Parent=Msa0658570-mRNA-1
chr4_3	exon	68720825	68721189	68720825	ID=Msa0658570-mRNA-1:exon:19964;Parent=Msa0658570-mRNA-1
chr4_3	exon	68721511	68722756	68721511	ID=Msa0658570-mRNA-1:exon:19965;Parent=Msa0658570-mRNA-1
chr4_3	five_prime_UTR	68719810	68720283	68719810	ID=Msa0658570-mRNA-1:five_prime_utr;Parent=Msa0658570-mRNA-1
chr4_3	CDS	68720284	68720344	68720284	ID=Msa0658570-mRNA-1:cds;Parent=Msa0658570-mRNA-1
chr4_3	CDS	68720825	68721189	68720825	ID=Msa0658570-mRNA-1:cds;Parent=Msa0658570-mRNA-1
chr4_3	CDS	68721511	68722023	68721511	ID=Msa0658570-mRNA-1:cds;Parent=Msa0658570-mRNA-1
chr4_3	three_prime_UTR	68722024	68722756	68722024	ID=Msa0658570-mRNA-1:three_prime_utr;Parent=Msa0658570-mRNA-1

Gene Sequence

>Msa0658570

ATGAAGAGACTTGGCAGCTCCGATTCTTTAGGTGCTCTCATGACAATTTGTCCAACAACAGAAGAAGAGAGTCCAAGGAACAACCAAGTGTATGGAAGGGAATTTCAGTCCGTGATGGAAGGACTAGATGAAGAAGGATGTGTTGATGAACCAGGGCAGAAGAAACGAAGACTAAGTGTGGATCAAGTTAAGGCTTTGGAGAAGAATTTTGAAGTTGAAAACAAGCTTGAACCAGATAGGAAAGTGAAGCTTGCTCAAGAGCTTGGTTTGCAACCAAGACAGGTTGCTGTTTGGTTTCAAAACCGTCGTGCTAGATGGAAGACCAAACAATTGGAAAGAGATTATGGTGTTCTCAAAGCCAATTATGATGCACTTAAACTTAATTGTGAGAATCTCCAACGTGACAATGAAACCTTACTCAAAGAGGTTAAGGAATTGAAATCAAGATTGCAAATACAAGAAGAAAACACAACTACTGAAAGCGATGTTTGTGTGAAAGAAGAGTTGATAACATTGCAAGAATCAGAAAACACGGCTTCTGATGAAACCGCCATTCTTAGATCCGATTCTAAGGACTTAAACTACGATTGTTTCAAAAACGGTGATGGAGTTGCTTCACTATTTCCTCCGGATTTCAAAGACGGTTCTTCAGATAGCGATTCAAGTGCAATCTTGAATGACGAAAGCAACGCAGCAATTTCTTCATCTGGGGTTCTTCAAAATCACAACTTTTTGATGTCTCCTGGTTCTTCTTCCTTGAAGTTTAATTGTTCTGAATCGTCGTCATCACCGTCTTCTATGAGTAATTGCTTTCAGTTTCAGACGCAGTTTGTGAAGATGGAAGAGCATAATTTTCTTAGTGCTGATGAGACTTGTGATTTCTTCTCAGATGAACAACCACCAACGCTTCAATGGTATTGTTCAGAGGAGTGGAATTAA

Protein sequence

>Msa0658570

MKRLGSSDSLGALMTICPTTEEESPRNNQVYGREFQSVMEGLDEEGCVDEPGQKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNCENLQRDNETLLKEVKELKSRLQIQEENTTTESDVCVKEELITLQESENTASDETAILRSDSKDLNYDCFKNGDGVASLFPPDFKDGSSDSDSSAILNDESNAAISSSGVLQNHNFLMSPGSSSLKFNCSESSSSPSSMSNCFQFQTQFVKMEEHNFLSADETCDFFSDEQPPTLQWYCSEEWN*