Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0672210 | XP_003605198.1 | 85.522 | 297 | 33 | 3 | 1 | 292 | 1 | 292 | 1.96e-167 | 476 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0672210 | G7JFX4 | 85.522 | 297 | 33 | 3 | 1 | 292 | 1 | 292 | 9.37e-168 | 476 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033980 | Msa0672210 | 0.803412 | 3.530165e-49 | -8.615850e-47 |
| Msa0081930 | Msa0672210 | 0.802722 | 4.902689e-49 | -8.615850e-47 |
| Msa0672210 | Msa0682900 | 0.802374 | 5.783023e-49 | -8.615850e-47 |
| Msa0672210 | Msa1203250 | 0.801135 | 1.038761e-48 | -8.615850e-47 |
| Msa0672210 | Msa1333410 | 0.810085 | 1.373302e-50 | -8.615850e-47 |
| Msa0431670 | Msa0672210 | 0.817162 | 3.804663e-52 | -8.615850e-47 |
| Msa0469160 | Msa0672210 | 0.804027 | 2.630150e-49 | -8.615850e-47 |
| Msa0309770 | Msa0672210 | 0.801271 | 9.740999e-49 | -8.615850e-47 |
| Msa0515010 | Msa0672210 | 0.816351 | 5.783033e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0672210 | MtrunA17_Chr4g0012081 | 85.522 | 297 | 33 | 3 | 1 | 292 | 1 | 292 | 1.80e-171 | 476 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0672210 | AT1G73440.1 | 42.169 | 249 | 114 | 5 | 40 | 287 | 33 | 252 | 2.19e-50 | 167 |
Find 65 sgRNAs with CRISPR-Local
Find 342 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCCTTTCTTCTTCTTAAT+TGG | 0.098511 | 4_4:-16491807 | None:intergenic |
| GTAATTCTTTGTGGCTATTT+TGG | 0.133905 | 4_4:+16496637 | Msa0672210:three_prime_UTR |
| CTTGTTCTTCTTCGTCATTT+TGG | 0.138425 | 4_4:-16491866 | None:intergenic |
| TGTTCTTTCAATTCTCGTTC+TGG | 0.187250 | 4_4:-16491527 | None:intergenic |
| CATCAGCAAGGCTGAGAAAA+AGG | 0.215319 | 4_4:+16494167 | Msa0672210:CDS |
| TCTGACTTTGAAAATGCTTC+TGG | 0.225142 | 4_4:+16491933 | Msa0672210:CDS |
| CATAAATTCCAACATCTTGA+TGG | 0.293075 | 4_4:-16496857 | None:intergenic |
| GTACACTTCTTCCAGCTTGA+TGG | 0.320894 | 4_4:+16494376 | Msa0672210:CDS |
| GTTCTTTCAATTCTCGTTCT+GGG | 0.335879 | 4_4:-16491526 | None:intergenic |
| TGAATCAATCTAATCCAAAA+TGG | 0.350843 | 4_4:+16491566 | Msa0672210:exon |
| CAAAGCGAGGTTAAAGGCTC+TGG | 0.360058 | 4_4:+16491746 | Msa0672210:CDS |
| AGAAAACAAAGCGAGGTTAA+AGG | 0.366162 | 4_4:+16491740 | Msa0672210:CDS |
| TATTTATCTGTAATTCTTTG+TGG | 0.373697 | 4_4:+16496628 | Msa0672210:three_prime_UTR |
| GGCTCTGGGTTTACCCCAAA+TGG | 0.377147 | 4_4:+16491761 | Msa0672210:CDS |
| TTCCGATTGTGAATTGGATT+CGG | 0.377799 | 4_4:-16491604 | None:intergenic |
| CTGACTTTGAAAATGCTTCT+GGG | 0.382009 | 4_4:+16491934 | Msa0672210:CDS |
| TTTCAAAGAAGAAACCATTT+GGG | 0.383093 | 4_4:-16491775 | None:intergenic |
| AACTGGGTTTGAACCTGTTA+TGG | 0.393964 | 4_4:+16496762 | Msa0672210:three_prime_UTR |
| CACAATGGTATAAAGATCAT+TGG | 0.402254 | 4_4:+16496688 | Msa0672210:three_prime_UTR |
| TCTTTCTTCCGATTGTGAAT+TGG | 0.402545 | 4_4:-16491610 | None:intergenic |
| GTTATGTTGGACACCATAAC+AGG | 0.416803 | 4_4:-16496775 | None:intergenic |
| CATTCAGATTCAAGAAGATA+AGG | 0.438392 | 4_4:+16494194 | Msa0672210:CDS |
| ACTCCAATTAAGAAGAAGAA+AGG | 0.454631 | 4_4:+16491804 | Msa0672210:CDS |
| AAATACGGAAATTGTTATGT+TGG | 0.460936 | 4_4:-16496788 | None:intergenic |
| AAGAAGCTTCTGCAGAGTCT+TGG | 0.461110 | 4_4:-16494119 | None:intergenic |
| ATTCAGATTCAAGAAGATAA+GGG | 0.464682 | 4_4:+16494195 | Msa0672210:CDS |
| TTCTGGGTCACGCAAAAGAA+AGG | 0.482859 | 4_4:+16491950 | Msa0672210:CDS |
| ATCCGAATCCAATTCACAAT+CGG | 0.485780 | 4_4:+16491602 | Msa0672210:CDS |
| CTCCAATTAAGAAGAAGAAA+GGG | 0.491619 | 4_4:+16491805 | Msa0672210:CDS |
| AAGCTTCTGCAGAGTCTTGG+AGG | 0.493279 | 4_4:-16494116 | None:intergenic |
| TGACATGCAGAAGCAGGAAA+AGG | 0.519012 | 4_4:+16495750 | Msa0672210:intron |
| GGCCAAGAACAAAAGTTTGA+AGG | 0.528609 | 4_4:+16493916 | Msa0672210:intron |
| TTTGTTCTAACAAGACTGTA+GGG | 0.533313 | 4_4:+16494142 | Msa0672210:CDS |
| TGATAGTGATGGAGATGGAA+GGG | 0.536139 | 4_4:+16495863 | Msa0672210:CDS |
| ATTCGTTGCTTTGATAGTGA+TGG | 0.542982 | 4_4:+16495852 | Msa0672210:CDS |
| CAATGATCTTTATACCATTG+TGG | 0.543786 | 4_4:-16496687 | None:intergenic |
| TAATATAGGATAGGATATCA+TGG | 0.549767 | 4_4:+16496602 | Msa0672210:three_prime_UTR |
| AAAGCGAGGTTAAAGGCTCT+GGG | 0.552062 | 4_4:+16491747 | Msa0672210:CDS |
| TTAGGCATATAATATAGGAT+AGG | 0.553185 | 4_4:+16496593 | Msa0672210:three_prime_UTR |
| GAAGAAGAAAGGGAAAGAGA+AGG | 0.555370 | 4_4:+16491815 | Msa0672210:CDS |
| TTTGGCATCACTTTGAGGGG+TGG | 0.556539 | 4_4:+16496655 | Msa0672210:three_prime_UTR |
| TGCATGGACAGATAAAGAGT+TGG | 0.558958 | 4_4:+16495821 | Msa0672210:CDS |
| TTTCTCGTACTCCGACATCA+TGG | 0.559783 | 4_4:-16491697 | None:intergenic |
| AGATTGATTCAGGTAGTCGT+AGG | 0.565716 | 4_4:-16491554 | None:intergenic |
| TTATCAAATTACCATCAAGC+TGG | 0.569027 | 4_4:-16494387 | None:intergenic |
| TTTGCCAACAGTTTGCTAGT+CGG | 0.590398 | 4_4:+16494326 | Msa0672210:intron |
| AGCTTCTGCAGAGTCTTGGA+GGG | 0.591469 | 4_4:-16494115 | None:intergenic |
| GTGTACAATGAGTTCGTCCT+CGG | 0.592942 | 4_4:-16494359 | None:intergenic |
| TGCTTTGATAGTGATGGAGA+TGG | 0.603373 | 4_4:+16495858 | Msa0672210:CDS |
| AGAAGACGAAGCTTTGATGC+AGG | 0.607807 | 4_4:+16493994 | Msa0672210:CDS |
| ACTACTACTAACATTCCGTA+CGG | 0.610925 | 4_4:-16491673 | None:intergenic |
| GAAAACTCTTGACAAGGTCA+AGG | 0.617351 | 4_4:+16496562 | Msa0672210:exon |
| TAGTAGTAGTACCATGATGT+CGG | 0.624728 | 4_4:+16491686 | Msa0672210:CDS |
| AGAGTAACTGGAAAGAAGCA+TGG | 0.627285 | 4_4:+16493947 | Msa0672210:CDS |
| TTCAAAGAAGAAACCATTTG+GGG | 0.637284 | 4_4:-16491774 | None:intergenic |
| AAGCAGAAGAAGAAACCGTA+CGG | 0.641495 | 4_4:+16491658 | Msa0672210:CDS |
| AGCCCTGAAAACTCTTGACA+AGG | 0.647429 | 4_4:+16496556 | Msa0672210:exon |
| GTGTGTGTGAGATATTTCGA+TGG | 0.648063 | 4_4:-16496730 | None:intergenic |
| CAATCTTCCGAAAATCGTCA+AGG | 0.656112 | 4_4:-16496510 | None:intergenic |
| TTGATAGTGATGGAGATGGA+AGG | 0.658615 | 4_4:+16495862 | Msa0672210:CDS |
| GACTGTAGGGAACATCAGCA+AGG | 0.680978 | 4_4:+16494155 | Msa0672210:CDS |
| GGTGGAGAGCATGACCACAA+TGG | 0.689097 | 4_4:+16496673 | Msa0672210:three_prime_UTR |
| GAATTGCAGAAAACAAAGCG+AGG | 0.702523 | 4_4:+16491733 | Msa0672210:CDS |
| TAGTCGGCTGCAAATGACCG+AGG | 0.715844 | 4_4:+16494342 | Msa0672210:CDS |
| GTAACTGGAAAGAAGCATGG+TGG | 0.736461 | 4_4:+16493950 | Msa0672210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACTTAATTATTTTTTCTTT+TGG | - | chr4_4:16492893-16492912 | None:intergenic | 10.0% |
| !!! | TAGTTAGATTTTAAAAAAAA+CGG | - | chr4_4:16494663-16494682 | None:intergenic | 10.0% |
| !! | GTTAATTATATATCATTATA+AGG | - | chr4_4:16494894-16494913 | None:intergenic | 10.0% |
| !!! | TTTGTTATTATATAATCAAT+TGG | + | chr4_4:16494917-16494936 | Msa0672210:intron | 10.0% |
| !!! | TTTTAAAATTAAATTGAACT+TGG | + | chr4_4:16495141-16495160 | Msa0672210:intron | 10.0% |
| !!! | TTTAAAATTAAATTGAACTT+GGG | + | chr4_4:16495142-16495161 | Msa0672210:intron | 10.0% |
| !! | TTTAATATATAAATGAAGAA+AGG | + | chr4_4:16495644-16495663 | Msa0672210:intron | 10.0% |
| !! | TATTAACTAATTAAGTATAA+TGG | + | chr4_4:16496470-16496489 | Msa0672210:intron | 10.0% |
| !! | AACAAGTTAATTGAAAAAAT+GGG | - | chr4_4:16492039-16492058 | None:intergenic | 15.0% |
| !! | AAACAAGTTAATTGAAAAAA+TGG | - | chr4_4:16492040-16492059 | None:intergenic | 15.0% |
| !!! | TCAATTAACTTGTTTTATAT+TGG | + | chr4_4:16492045-16492064 | Msa0672210:intron | 15.0% |
| !! | TATATATACAGTACAAATTT+AGG | + | chr4_4:16493745-16493764 | Msa0672210:intron | 15.0% |
| !! | AAAAAAGAAGAACAAAAAAT+CGG | + | chr4_4:16494218-16494237 | Msa0672210:CDS | 15.0% |
| !!! | TACAAATTGTTCAATTTTTT+TGG | - | chr4_4:16495317-16495336 | None:intergenic | 15.0% |
| !! | AAAAAATTGAACAATTTGTA+TGG | + | chr4_4:16495317-16495336 | Msa0672210:intron | 15.0% |
| !!! | TTCATAATTTTATTTTGGAT+TGG | - | chr4_4:16495467-16495486 | None:intergenic | 15.0% |
| !!! | TCTGATTCATAATTTTATTT+TGG | - | chr4_4:16495472-16495491 | None:intergenic | 15.0% |
| !! | AAAATAAAATTATGAATCAG+AGG | + | chr4_4:16495471-16495490 | Msa0672210:intron | 15.0% |
| !! | AAATAAAATTATGAATCAGA+GGG | + | chr4_4:16495472-16495491 | Msa0672210:intron | 15.0% |
| !! | CTTCATTTATATATTAAATC+AGG | - | chr4_4:16495642-16495661 | None:intergenic | 15.0% |
| !! | CTATTTAGTATTTAAATTCA+TGG | + | chr4_4:16495694-16495713 | Msa0672210:intron | 15.0% |
| !!! | TTTTAGATTTGTTAATTTTG+AGG | + | chr4_4:16496307-16496326 | Msa0672210:intron | 15.0% |
| !!! | TTTAGATTTGTTAATTTTGA+GGG | + | chr4_4:16496308-16496327 | Msa0672210:intron | 15.0% |
| !!! | ACTTGTTTTATATTGGTTTA+AGG | + | chr4_4:16492052-16492071 | Msa0672210:intron | 20.0% |
| !! | AGTAGTTATATAAGTTTCAA+GGG | - | chr4_4:16492101-16492120 | None:intergenic | 20.0% |
| !! | TAGTAGTTATATAAGTTTCA+AGG | - | chr4_4:16492102-16492121 | None:intergenic | 20.0% |
| !! | AAGGAAAAACAATTATACTT+AGG | - | chr4_4:16492308-16492327 | None:intergenic | 20.0% |
| !!! | GAAAAATATTGTTTTTGATC+TGG | + | chr4_4:16492458-16492477 | Msa0672210:intron | 20.0% |
| !! | AAAATAAAATTGCAGTTAGT+AGG | + | chr4_4:16493186-16493205 | Msa0672210:intron | 20.0% |
| !! | GTGAAATTATTTGATAAAGT+AGG | + | chr4_4:16493254-16493273 | Msa0672210:intron | 20.0% |
| !! | AATAAGAAAAGCAAACATAT+CGG | - | chr4_4:16493329-16493348 | None:intergenic | 20.0% |
| !! | TTACCATTTATTAAGTGTTT+AGG | + | chr4_4:16493351-16493370 | Msa0672210:intron | 20.0% |
| !! | TTTCCTAAACACTTAATAAA+TGG | - | chr4_4:16493357-16493376 | None:intergenic | 20.0% |
| !!! | TACTTATCATTTAAGATCTT+AGG | - | chr4_4:16493456-16493475 | None:intergenic | 20.0% |
| !! | AAGTATGTCAATACAAAAAT+AGG | + | chr4_4:16493600-16493619 | Msa0672210:intron | 20.0% |
| !! | GTATATATAAACAATAATCC+TGG | - | chr4_4:16493734-16493753 | None:intergenic | 20.0% |
| !!! | TTTGATTTGAAATGAATACT+AGG | + | chr4_4:16493786-16493805 | Msa0672210:intron | 20.0% |
| !! | TTGTATAAGGTAAAATAGAA+TGG | - | chr4_4:16494693-16494712 | None:intergenic | 20.0% |
| !!! | ATTGGTCTATTCATTTAAAA+TGG | + | chr4_4:16494823-16494842 | Msa0672210:intron | 20.0% |
| !!! | TAAAAATGTGGATTTTCAAA+AGG | - | chr4_4:16494869-16494888 | None:intergenic | 20.0% |
| !! | CAATATGAAAACAATATGTT+TGG | - | chr4_4:16495112-16495131 | None:intergenic | 20.0% |
| !! | AATATATAAATGAAGAAAGG+AGG | + | chr4_4:16495647-16495666 | Msa0672210:intron | 20.0% |
| !!! | AAGTTTTAGGCATATAATAT+AGG | + | chr4_4:16496588-16496607 | Msa0672210:three_prime_UTR | 20.0% |
| !! | TATTTATCTGTAATTCTTTG+TGG | + | chr4_4:16496628-16496647 | Msa0672210:three_prime_UTR | 20.0% |
| !!! | ATTTTGGATTAGATTGATTC+AGG | - | chr4_4:16491567-16491586 | None:intergenic | 25.0% |
| ! | TGAATCAATCTAATCCAAAA+TGG | + | chr4_4:16491566-16491585 | Msa0672210:exon | 25.0% |
| ! | TTTCAAAGAAGAAACCATTT+GGG | - | chr4_4:16491778-16491797 | None:intergenic | 25.0% |
| !! | TTTTCAAAGAAGAAACCATT+TGG | - | chr4_4:16491779-16491798 | None:intergenic | 25.0% |
| !!! | TGTTTTATATTGGTTTAAGG+AGG | + | chr4_4:16492055-16492074 | Msa0672210:intron | 25.0% |
| !!! | GTTTTATATTGGTTTAAGGA+GGG | + | chr4_4:16492056-16492075 | Msa0672210:intron | 25.0% |
| !! | TGATTGAATATACATCGATT+CGG | - | chr4_4:16492490-16492509 | None:intergenic | 25.0% |
| !! | AAGTCTTTGAAAATAGCTTA+TGG | + | chr4_4:16493375-16493394 | Msa0672210:intron | 25.0% |
| ! | AAGACTCAAAATAAAGTCAA+AGG | - | chr4_4:16493541-16493560 | None:intergenic | 25.0% |
| !! | GTATTGACATACTTCAAATT+GGG | - | chr4_4:16493594-16493613 | None:intergenic | 25.0% |
| !! | TGTATTGACATACTTCAAAT+TGG | - | chr4_4:16493595-16493614 | None:intergenic | 25.0% |
| ! | TGATTAAAAATCTATTCTGC+AGG | + | chr4_4:16493701-16493720 | Msa0672210:intron | 25.0% |
| !! | TTTTCAAACCATATCTGTAA+GGG | - | chr4_4:16493853-16493872 | None:intergenic | 25.0% |
| ! | TTCTAATCAGCAAAATCTTT+AGG | - | chr4_4:16494067-16494086 | None:intergenic | 25.0% |
| ! | ATTAGAATAATGTTGTGGAT+AGG | + | chr4_4:16494080-16494099 | Msa0672210:intron | 25.0% |
| ! | ATTCAGATTCAAGAAGATAA+GGG | + | chr4_4:16494195-16494214 | Msa0672210:CDS | 25.0% |
| ! | ACAAACTGAAAGAATTACAA+AGG | - | chr4_4:16494279-16494298 | None:intergenic | 25.0% |
| ! | AAGGTAAAATAGAATGGAAT+AGG | - | chr4_4:16494687-16494706 | None:intergenic | 25.0% |
| !!! | AACAAGTTTTGATTTCATGT+GGG | - | chr4_4:16494760-16494779 | None:intergenic | 25.0% |
| ! | AAATGAATAGACCAATAAGA+TGG | - | chr4_4:16494819-16494838 | None:intergenic | 25.0% |
| !!! | AAAGAAAGACAAGCTTTATT+TGG | - | chr4_4:16495436-16495455 | None:intergenic | 25.0% |
| ! | AAATAGCAAAAGAAAAACAG+AGG | - | chr4_4:16495680-16495699 | None:intergenic | 25.0% |
| !!! | ACCTTCAATTTTAACTTAGA+TGG | + | chr4_4:16495933-16495952 | Msa0672210:intron | 25.0% |
| !!! | CCTTCAATTTTAACTTAGAT+GGG | + | chr4_4:16495934-16495953 | Msa0672210:intron | 25.0% |
| !!! | TTTTGAAATATTGCTAGACA+TGG | + | chr4_4:16495968-16495987 | Msa0672210:intron | 25.0% |
| ! | TATACTGTCAAAGTATACAA+TGG | + | chr4_4:16496020-16496039 | Msa0672210:intron | 25.0% |
| !!! | ATTTTGAGTACTATGTAGTT+AGG | + | chr4_4:16496046-16496065 | Msa0672210:intron | 25.0% |
| ! | AAGGGTTTCTAAGTAAAAAT+GGG | - | chr4_4:16496188-16496207 | None:intergenic | 25.0% |
| !!! | TAATCTATTTGCGTTGATTA+AGG | + | chr4_4:16496267-16496286 | Msa0672210:intron | 25.0% |
| ! | ATTTAGTGTTTCAAATTGTG+AGG | - | chr4_4:16496348-16496367 | None:intergenic | 25.0% |
| ! | TTAGGCATATAATATAGGAT+AGG | + | chr4_4:16496593-16496612 | Msa0672210:three_prime_UTR | 25.0% |
| ! | TAATATAGGATAGGATATCA+TGG | + | chr4_4:16496602-16496621 | Msa0672210:three_prime_UTR | 25.0% |
| ! | AAATACGGAAATTGTTATGT+TGG | - | chr4_4:16496791-16496810 | None:intergenic | 25.0% |
| ! | TGTTTTGCGTTTTACCATTT+TGG | - | chr4_4:16491583-16491602 | None:intergenic | 30.0% |
| AAGAACATCATCATCATCAT+CGG | + | chr4_4:16491629-16491648 | Msa0672210:CDS | 30.0% | |
| TTCAAAGAAGAAACCATTTG+GGG | - | chr4_4:16491777-16491796 | None:intergenic | 30.0% | |
| ACTCCAATTAAGAAGAAGAA+AGG | + | chr4_4:16491804-16491823 | Msa0672210:CDS | 30.0% | |
| CTCCAATTAAGAAGAAGAAA+GGG | + | chr4_4:16491805-16491824 | Msa0672210:CDS | 30.0% | |
| TTCCCTTTCTTCTTCTTAAT+TGG | - | chr4_4:16491810-16491829 | None:intergenic | 30.0% | |
| !! | TTGTTCTTCTTCGTCATTTT+GGG | - | chr4_4:16491868-16491887 | None:intergenic | 30.0% |
| TTGAGTCTACTCTGTAATTT+CGG | + | chr4_4:16492169-16492188 | Msa0672210:intron | 30.0% | |
| TACTCTGTAATTTCGGTATA+AGG | + | chr4_4:16492176-16492195 | Msa0672210:intron | 30.0% | |
| AGATTATAGAGTAGACTCAA+TGG | + | chr4_4:16492538-16492557 | Msa0672210:intron | 30.0% | |
| AGTCTTTAGTTAAGCAAACT+AGG | - | chr4_4:16493078-16493097 | None:intergenic | 30.0% | |
| !! | GAAGAAATATGTTTTTGCAG+AGG | + | chr4_4:16493567-16493586 | Msa0672210:intron | 30.0% |
| ! | GTTTTCAAACCATATCTGTA+AGG | - | chr4_4:16493854-16493873 | None:intergenic | 30.0% |
| AAGGTGAAAAATAGAGTAAC+TGG | + | chr4_4:16493935-16493954 | Msa0672210:CDS | 30.0% | |
| !! | TCTTGATTTCTAGTTCTTGT+TGG | + | chr4_4:16494020-16494039 | Msa0672210:intron | 30.0% |
| ! | TGCTGATTAGAATAATGTTG+TGG | + | chr4_4:16494075-16494094 | Msa0672210:intron | 30.0% |
| ! | TTTTGTTCTAACAAGACTGT+AGG | + | chr4_4:16494141-16494160 | Msa0672210:CDS | 30.0% |
| TTTGTTCTAACAAGACTGTA+GGG | + | chr4_4:16494142-16494161 | Msa0672210:CDS | 30.0% | |
| CATTCAGATTCAAGAAGATA+AGG | + | chr4_4:16494194-16494213 | Msa0672210:CDS | 30.0% | |
| ACTGAAAGAATTACAAAGGA+AGG | - | chr4_4:16494275-16494294 | None:intergenic | 30.0% | |
| TAGTTATTAAAAACCGACCT+CGG | - | chr4_4:16494304-16494323 | None:intergenic | 30.0% | |
| TTATCAAATTACCATCAAGC+TGG | - | chr4_4:16494390-16494409 | None:intergenic | 30.0% | |
| TGTTCAAAACATAATGACTG+AGG | - | chr4_4:16494569-16494588 | None:intergenic | 30.0% | |
| !!! | CAACAAGTTTTGATTTCATG+TGG | - | chr4_4:16494761-16494780 | None:intergenic | 30.0% |
| CACATGAAATCAAAACTTGT+TGG | + | chr4_4:16494759-16494778 | Msa0672210:intron | 30.0% | |
| CATTATAAGGGCTAAAAATG+TGG | - | chr4_4:16494881-16494900 | None:intergenic | 30.0% | |
| TTGAGCATCTATCTATTAGT+TGG | + | chr4_4:16494950-16494969 | Msa0672210:intron | 30.0% | |
| ATTTCAACTTACACGTGAAT+TGG | + | chr4_4:16494992-16495011 | Msa0672210:intron | 30.0% | |
| ! | ATTTTGCCTTTACCTACTTT+AGG | + | chr4_4:16495346-16495365 | Msa0672210:intron | 30.0% |
| ! | TTTTGCCTTTACCTACTTTA+GGG | + | chr4_4:16495347-16495366 | Msa0672210:intron | 30.0% |
| AGATTTGAAAACCCTAAAGT+AGG | - | chr4_4:16495361-16495380 | None:intergenic | 30.0% | |
| ! | TGTGAGTGTTCTAAATTTCA+GGG | + | chr4_4:16495539-16495558 | Msa0672210:intron | 30.0% |
| !!! | TTCTCTCTTTTTTCATCAGT+AGG | - | chr4_4:16495579-16495598 | None:intergenic | 30.0% |
| CCCATCTAAGTTAAAATTGA+AGG | - | chr4_4:16495937-16495956 | None:intergenic | 30.0% | |
| TGACAGTATAAAGATTCTGA+AGG | - | chr4_4:16496010-16496029 | None:intergenic | 30.0% | |
| GATAAACTAAAGTGACATAG+TGG | - | chr4_4:16496150-16496169 | None:intergenic | 30.0% | |
| CAAGGGTTTCTAAGTAAAAA+TGG | - | chr4_4:16496189-16496208 | None:intergenic | 30.0% | |
| TAGACCTTAAAAGTGAACAA+GGG | - | chr4_4:16496206-16496225 | None:intergenic | 30.0% | |
| ATAGACCTTAAAAGTGAACA+AGG | - | chr4_4:16496207-16496226 | None:intergenic | 30.0% | |
| ! | AAGGTCAAGGTTAAAGTTTT+AGG | + | chr4_4:16496575-16496594 | Msa0672210:three_prime_UTR | 30.0% |
| ! | GTAATTCTTTGTGGCTATTT+TGG | + | chr4_4:16496637-16496656 | Msa0672210:three_prime_UTR | 30.0% |
| CAATGATCTTTATACCATTG+TGG | - | chr4_4:16496690-16496709 | None:intergenic | 30.0% | |
| CACAATGGTATAAAGATCAT+TGG | + | chr4_4:16496688-16496707 | Msa0672210:three_prime_UTR | 30.0% | |
| !!! | CATTTTGACTGGCAAAAATA+CGG | - | chr4_4:16496806-16496825 | None:intergenic | 30.0% |
| ! | ATTTTTGCCAGTCAAAATGT+AGG | + | chr4_4:16496807-16496826 | Msa0672210:three_prime_UTR | 30.0% |
| ! | AAATTTTGCCATCAAGATGT+TGG | + | chr4_4:16496849-16496868 | Msa0672210:three_prime_UTR | 30.0% |
| CATAAATTCCAACATCTTGA+TGG | - | chr4_4:16496860-16496879 | None:intergenic | 30.0% | |
| GTTCTTTCAATTCTCGTTCT+GGG | - | chr4_4:16491529-16491548 | None:intergenic | 35.0% | |
| TGTTCTTTCAATTCTCGTTC+TGG | - | chr4_4:16491530-16491549 | None:intergenic | 35.0% | |
| ATCCGAATCCAATTCACAAT+CGG | + | chr4_4:16491602-16491621 | Msa0672210:CDS | 35.0% | |
| TTCCGATTGTGAATTGGATT+CGG | - | chr4_4:16491607-16491626 | None:intergenic | 35.0% | |
| TCTTTCTTCCGATTGTGAAT+TGG | - | chr4_4:16491613-16491632 | None:intergenic | 35.0% | |
| ACTACTACTAACATTCCGTA+CGG | - | chr4_4:16491676-16491695 | None:intergenic | 35.0% | |
| TAGTAGTAGTACCATGATGT+CGG | + | chr4_4:16491686-16491705 | Msa0672210:CDS | 35.0% | |
| AGAAAACAAAGCGAGGTTAA+AGG | + | chr4_4:16491740-16491759 | Msa0672210:CDS | 35.0% | |
| !! | TGTTCTTCTTCGTCATTTTG+GGG | - | chr4_4:16491867-16491886 | None:intergenic | 35.0% |
| ! | CTTGTTCTTCTTCGTCATTT+TGG | - | chr4_4:16491869-16491888 | None:intergenic | 35.0% |
| ! | TCTGACTTTGAAAATGCTTC+TGG | + | chr4_4:16491933-16491952 | Msa0672210:CDS | 35.0% |
| ! | CTGACTTTGAAAATGCTTCT+GGG | + | chr4_4:16491934-16491953 | Msa0672210:CDS | 35.0% |
| !! | TTATATTGGTTTAAGGAGGG+TGG | + | chr4_4:16492059-16492078 | Msa0672210:intron | 35.0% |
| !! | TAGTTTGGTTCTATGAAGCA+TGG | + | chr4_4:16492202-16492221 | Msa0672210:intron | 35.0% |
| !! | TTCAATGAGTGTCGAAGTAA+AGG | - | chr4_4:16492327-16492346 | None:intergenic | 35.0% |
| ACCTATATAACACTCATTCG+AGG | + | chr4_4:16492359-16492378 | Msa0672210:intron | 35.0% | |
| AGTAAGTACCAAAGTTGTCA+GGG | - | chr4_4:16492412-16492431 | None:intergenic | 35.0% | |
| TAGTAAGTACCAAAGTTGTC+AGG | - | chr4_4:16492413-16492432 | None:intergenic | 35.0% | |
| AGTCTACTCTATAATCTCAC+TGG | - | chr4_4:16492535-16492554 | None:intergenic | 35.0% | |
| ACGTAAACACCCTTATATAG+AGG | + | chr4_4:16492593-16492612 | Msa0672210:intron | 35.0% | |
| GTGCTTATGTCATGCAATAA+CGG | - | chr4_4:16492942-16492961 | None:intergenic | 35.0% | |
| TAAAATTGCAGTTAGTAGGC+AGG | + | chr4_4:16493190-16493209 | Msa0672210:intron | 35.0% | |
| TGATGAACACTTAATTGAGC+AGG | + | chr4_4:16493482-16493501 | Msa0672210:intron | 35.0% | |
| AGGCATAAACATGAAAACCA+TGG | - | chr4_4:16493521-16493540 | None:intergenic | 35.0% | |
| GCAGGGAAAAACAATAGTAT+AGG | - | chr4_4:16493885-16493904 | None:intergenic | 35.0% | |
| ! | CACCTTCAAACTTTTGTTCT+TGG | - | chr4_4:16493921-16493940 | None:intergenic | 35.0% |
| GGAAGGATCATTATGTGAAT+AGG | - | chr4_4:16494258-16494277 | None:intergenic | 35.0% | |
| ATTCTTTCAGTTTGTATCCG+AGG | + | chr4_4:16494284-16494303 | Msa0672210:intron | 35.0% | |
| AAACAAAAAGTAGCGTCAAC+AGG | - | chr4_4:16494415-16494434 | None:intergenic | 35.0% | |
| !!! | ACGCTACTTTTTGTTTGTTG+AGG | + | chr4_4:16494419-16494438 | Msa0672210:intron | 35.0% |
| !!! | CGCTACTTTTTGTTTGTTGA+GGG | + | chr4_4:16494420-16494439 | Msa0672210:intron | 35.0% |
| TAATCCAATCAGTTCATCCA+TGG | - | chr4_4:16494531-16494550 | None:intergenic | 35.0% | |
| ATAATGACTGAGGCTAACTT+TGG | - | chr4_4:16494559-16494578 | None:intergenic | 35.0% | |
| TCTATTCCATTCAACCCTAT+AGG | - | chr4_4:16494628-16494647 | None:intergenic | 35.0% | |
| !! | CTGTTTGGATTGGTTGTATA+AGG | - | chr4_4:16494706-16494725 | None:intergenic | 35.0% |
| CTTATACAACCAATCCAAAC+AGG | + | chr4_4:16494704-16494723 | Msa0672210:intron | 35.0% | |
| GAATAGACCAATAAGATGGT+TGG | - | chr4_4:16494815-16494834 | None:intergenic | 35.0% | |
| !!! | AATTTTTTTGGCTTTCGCAC+CGG | - | chr4_4:16495305-16495324 | None:intergenic | 35.0% |
| GAAAACCCTAAAGTAGGTAA+AGG | - | chr4_4:16495355-16495374 | None:intergenic | 35.0% | |
| ! | GTGTGAGTGTTCTAAATTTC+AGG | + | chr4_4:16495538-16495557 | Msa0672210:intron | 35.0% |
| GAGAGACTTGATTATTGACA+AGG | + | chr4_4:16495716-16495735 | Msa0672210:intron | 35.0% | |
| ! | CTATAACTCACGATTTTGCA+TGG | + | chr4_4:16495805-16495824 | Msa0672210:CDS | 35.0% |
| !! | ATTCGTTGCTTTGATAGTGA+TGG | + | chr4_4:16495852-16495871 | Msa0672210:CDS | 35.0% |
| ! | CTGTCAAACTTTTACCACTA+TGG | - | chr4_4:16496077-16496096 | None:intergenic | 35.0% |
| AGTTCAAATCTCTTCGAGAA+TGG | + | chr4_4:16496113-16496132 | Msa0672210:intron | 35.0% | |
| !! | GAAACCCTTGTTCACTTTTA+AGG | + | chr4_4:16496199-16496218 | Msa0672210:intron | 35.0% |
| AATTGTGAGGTCAGACAATA+TGG | - | chr4_4:16496335-16496354 | None:intergenic | 35.0% | |
| !!! | CTATTTTGGCATCACTTTGA+GGG | + | chr4_4:16496651-16496670 | Msa0672210:three_prime_UTR | 35.0% |
| !!! | TATTTTGGCATCACTTTGAG+GGG | + | chr4_4:16496652-16496671 | Msa0672210:three_prime_UTR | 35.0% |
| ACACACACAAGTAGAAAAAC+TGG | + | chr4_4:16496745-16496764 | Msa0672210:three_prime_UTR | 35.0% | |
| CACACACAAGTAGAAAAACT+GGG | + | chr4_4:16496746-16496765 | Msa0672210:three_prime_UTR | 35.0% | |
| !! | AACAAGTCCTACATTTTGAC+TGG | - | chr4_4:16496817-16496836 | None:intergenic | 35.0% |
| ! | AGATTGATTCAGGTAGTCGT+AGG | - | chr4_4:16491557-16491576 | None:intergenic | 40.0% |
| AAGCAGAAGAAGAAACCGTA+CGG | + | chr4_4:16491658-16491677 | Msa0672210:CDS | 40.0% | |
| GAATTGCAGAAAACAAAGCG+AGG | + | chr4_4:16491733-16491752 | Msa0672210:CDS | 40.0% | |
| GAAGAAGAAAGGGAAAGAGA+AGG | + | chr4_4:16491815-16491834 | Msa0672210:CDS | 40.0% | |
| TTCGGTATAAGGACGTAGTT+TGG | + | chr4_4:16492187-16492206 | Msa0672210:intron | 40.0% | |
| ! | AACACATGTCATAGGAGTGT+AGG | - | chr4_4:16492275-16492294 | None:intergenic | 40.0% |
| TACACTCCTATGACATGTGT+TGG | + | chr4_4:16492274-16492293 | Msa0672210:intron | 40.0% | |
| ACTTGTCCAACACATGTCAT+AGG | - | chr4_4:16492283-16492302 | None:intergenic | 40.0% | |
| TACTTCGACACTCATTGAAC+AGG | + | chr4_4:16492328-16492347 | Msa0672210:intron | 40.0% | |
| GCCTCGAATGAGTGTTATAT+AGG | - | chr4_4:16492363-16492382 | None:intergenic | 40.0% | |
| GAGCAAAGCTATGTATGAAC+TGG | - | chr4_4:16492791-16492810 | None:intergenic | 40.0% | |
| ! | AGCTTTGCTCTAGCTTCAAT+TGG | + | chr4_4:16492801-16492820 | Msa0672210:intron | 40.0% |
| ! | GCTTTGCTCTAGCTTCAATT+GGG | + | chr4_4:16492802-16492821 | Msa0672210:intron | 40.0% |
| GAAACTCAGTATTTAGCCGA+AGG | - | chr4_4:16492871-16492890 | None:intergenic | 40.0% | |
| ! | TGCAATAACGGCTGATTTAC+TGG | - | chr4_4:16492930-16492949 | None:intergenic | 40.0% |
| GCATGACATAAGCACTATGT+CGG | + | chr4_4:16492947-16492966 | Msa0672210:intron | 40.0% | |
| AGACTCGCAACTTGAACTTT+AGG | + | chr4_4:16493151-16493170 | Msa0672210:intron | 40.0% | |
| TTAGTAGGCAGGAATATGGT+TGG | + | chr4_4:16493201-16493220 | Msa0672210:intron | 40.0% | |
| GCAAACATATCGGTAAATGC+TGG | - | chr4_4:16493319-16493338 | None:intergenic | 40.0% | |
| ! | GACAAGTTGGGTAATCAAAG+AGG | - | chr4_4:16493429-16493448 | None:intergenic | 40.0% |
| !! | ATCTTAGGCATCGACAAGTT+GGG | - | chr4_4:16493441-16493460 | None:intergenic | 40.0% |
| TAATTGAGCAGGTTACCCAA+AGG | + | chr4_4:16493493-16493512 | Msa0672210:intron | 40.0% | |
| ATGAAAACCATGGCACCTTT+GGG | - | chr4_4:16493511-16493530 | None:intergenic | 40.0% | |
| AGGCATCAAGCTTGAACTTT+AGG | + | chr4_4:16493620-16493639 | Msa0672210:intron | 40.0% | |
| CTGCATAACCCTTACAGATA+TGG | + | chr4_4:16493842-16493861 | Msa0672210:intron | 40.0% | |
| GGCCAAGAACAAAAGTTTGA+AGG | + | chr4_4:16493916-16493935 | Msa0672210:intron | 40.0% | |
| AGAGTAACTGGAAAGAAGCA+TGG | + | chr4_4:16493947-16493966 | Msa0672210:CDS | 40.0% | |
| ATCAGCAAGGCTGAGAAAAA+GGG | + | chr4_4:16494168-16494187 | Msa0672210:CDS | 40.0% | |
| TTTCAGTTTGTATCCGAGGT+CGG | + | chr4_4:16494288-16494307 | Msa0672210:intron | 40.0% | |
| !! | TTTGCCAACAGTTTGCTAGT+CGG | + | chr4_4:16494326-16494345 | Msa0672210:intron | 40.0% |
| AGTGTCATACTTACTGTCCA+TGG | + | chr4_4:16494511-16494530 | Msa0672210:intron | 40.0% | |
| ! | AGTCTAAGCATAACTTGCGA+AGG | - | chr4_4:16494602-16494621 | None:intergenic | 40.0% |
| TTCGCAAGTTATGCTTAGAC+TGG | + | chr4_4:16494601-16494620 | Msa0672210:intron | 40.0% | |
| ! | TATGCTTAGACTGGTCCTAT+AGG | + | chr4_4:16494610-16494629 | Msa0672210:intron | 40.0% |
| ! | ATGCTTAGACTGGTCCTATA+GGG | + | chr4_4:16494611-16494630 | Msa0672210:intron | 40.0% |
| AACTATACGCCTGTTTGGAT+TGG | - | chr4_4:16494716-16494735 | None:intergenic | 40.0% | |
| TCCAAACAGGCGTATAGTTT+CGG | + | chr4_4:16494717-16494736 | Msa0672210:intron | 40.0% | |
| CTAGAAGCCAACCATCTTAT+TGG | + | chr4_4:16494805-16494824 | Msa0672210:intron | 40.0% | |
| TCAGAGGGAAGTTATTGAAC+CGG | + | chr4_4:16495487-16495506 | Msa0672210:intron | 40.0% | |
| TGCATGGACAGATAAAGAGT+TGG | + | chr4_4:16495821-16495840 | Msa0672210:CDS | 40.0% | |
| !! | TGCTTTGATAGTGATGGAGA+TGG | + | chr4_4:16495858-16495877 | Msa0672210:CDS | 40.0% |
| !! | TTGATAGTGATGGAGATGGA+AGG | + | chr4_4:16495862-16495881 | Msa0672210:CDS | 40.0% |
| ! | TGATAGTGATGGAGATGGAA+GGG | + | chr4_4:16495863-16495882 | Msa0672210:CDS | 40.0% |
| AGTTTGACAGTGTAACCTCA+AGG | + | chr4_4:16496087-16496106 | Msa0672210:intron | 40.0% | |
| GTTTGACAGTGTAACCTCAA+GGG | + | chr4_4:16496088-16496107 | Msa0672210:intron | 40.0% | |
| GAGATTTGAACTATCCCTTG+AGG | - | chr4_4:16496105-16496124 | None:intergenic | 40.0% | |
| ! | AGCTAAGCCTTGACGATTTT+CGG | + | chr4_4:16496503-16496522 | Msa0672210:intron | 40.0% |
| CAATCTTCCGAAAATCGTCA+AGG | - | chr4_4:16496513-16496532 | None:intergenic | 40.0% | |
| ! | GACCTTGTCAAGAGTTTTCA+GGG | - | chr4_4:16496561-16496580 | None:intergenic | 40.0% |
| ! | TGACCTTGTCAAGAGTTTTC+AGG | - | chr4_4:16496562-16496581 | None:intergenic | 40.0% |
| GAAAACTCTTGACAAGGTCA+AGG | + | chr4_4:16496562-16496581 | Msa0672210:exon | 40.0% | |
| !!! | GCTATTTTGGCATCACTTTG+AGG | + | chr4_4:16496650-16496669 | Msa0672210:three_prime_UTR | 40.0% |
| GTGTGTGTGAGATATTTCGA+TGG | - | chr4_4:16496733-16496752 | None:intergenic | 40.0% | |
| AACTGGGTTTGAACCTGTTA+TGG | + | chr4_4:16496762-16496781 | Msa0672210:three_prime_UTR | 40.0% | |
| GTTATGTTGGACACCATAAC+AGG | - | chr4_4:16496778-16496797 | None:intergenic | 40.0% | |
| TTTCTCGTACTCCGACATCA+TGG | - | chr4_4:16491700-16491719 | None:intergenic | 45.0% | |
| AAAGCGAGGTTAAAGGCTCT+GGG | + | chr4_4:16491747-16491766 | Msa0672210:CDS | 45.0% | |
| TTCTGGGTCACGCAAAAGAA+AGG | + | chr4_4:16491950-16491969 | Msa0672210:CDS | 45.0% | |
| GTTTAAGGAGGGTGGTAGTT+TGG | + | chr4_4:16492067-16492086 | Msa0672210:intron | 45.0% | |
| ! | GCATGGACACATCTAAGACT+AGG | + | chr4_4:16492219-16492238 | Msa0672210:intron | 45.0% |
| ! | ATCTAAGACTAGGCGTGTTG+CGG | + | chr4_4:16492229-16492248 | Msa0672210:intron | 45.0% |
| TGGTCAAACCCTGACAACTT+TGG | + | chr4_4:16492401-16492420 | Msa0672210:intron | 45.0% | |
| AGTAGACTCAATGGCAGAGT+TGG | + | chr4_4:16492547-16492566 | Msa0672210:intron | 45.0% | |
| AGCTGGGCTCCTCTATATAA+GGG | - | chr4_4:16492605-16492624 | None:intergenic | 45.0% | |
| TGTATGAACTGGTCCAACAC+AGG | - | chr4_4:16492780-16492799 | None:intergenic | 45.0% | |
| ! | GAGATTGGTCCCTCATTAGT+CGG | + | chr4_4:16492844-16492863 | Msa0672210:intron | 45.0% |
| GCAGTTAGTAGGCAGGAATA+TGG | + | chr4_4:16493197-16493216 | Msa0672210:intron | 45.0% | |
| !! | GATCTTAGGCATCGACAAGT+TGG | - | chr4_4:16493442-16493461 | None:intergenic | 45.0% |
| CATGAAAACCATGGCACCTT+TGG | - | chr4_4:16493512-16493531 | None:intergenic | 45.0% | |
| TATTCTGCAGGAAGAATGCC+AGG | + | chr4_4:16493713-16493732 | Msa0672210:intron | 45.0% | |
| ! | TTTTCCCTGCAACTAACTGC+AGG | + | chr4_4:16493895-16493914 | Msa0672210:intron | 45.0% |
| ! | GTAACTGGAAAGAAGCATGG+TGG | + | chr4_4:16493950-16493969 | Msa0672210:CDS | 45.0% |
| ! | AGAAGACGAAGCTTTGATGC+AGG | + | chr4_4:16493994-16494013 | Msa0672210:CDS | 45.0% |
| AAGAAGCTTCTGCAGAGTCT+TGG | - | chr4_4:16494122-16494141 | None:intergenic | 45.0% | |
| CATCAGCAAGGCTGAGAAAA+AGG | + | chr4_4:16494167-16494186 | Msa0672210:CDS | 45.0% | |
| GTGTACAATGAGTTCGTCCT+CGG | - | chr4_4:16494362-16494381 | None:intergenic | 45.0% | |
| GTACACTTCTTCCAGCTTGA+TGG | + | chr4_4:16494376-16494395 | Msa0672210:CDS | 45.0% | |
| CTGTCCATGGATGAACTGAT+TGG | + | chr4_4:16494524-16494543 | Msa0672210:intron | 45.0% | |
| TGACTGAGGCTAACTTTGGT+TGG | - | chr4_4:16494555-16494574 | None:intergenic | 45.0% | |
| ACTGGTCCTATAGGGTTGAA+TGG | + | chr4_4:16494619-16494638 | Msa0672210:intron | 45.0% | |
| ACCGAAACTATACGCCTGTT+TGG | - | chr4_4:16494721-16494740 | None:intergenic | 45.0% | |
| AAATTGAACTTGGGCTCCAG+TGG | + | chr4_4:16495151-16495170 | Msa0672210:intron | 45.0% | |
| CAGAGGGAAGTTATTGAACC+GGG | + | chr4_4:16495488-16495507 | Msa0672210:intron | 45.0% | |
| AGAGGGAAGTTATTGAACCG+GGG | + | chr4_4:16495489-16495508 | Msa0672210:intron | 45.0% | |
| TCTTTCTGACATGCAGAAGC+AGG | + | chr4_4:16495744-16495763 | Msa0672210:intron | 45.0% | |
| TGACATGCAGAAGCAGGAAA+AGG | + | chr4_4:16495750-16495769 | Msa0672210:intron | 45.0% | |
| GTAGTTAGGCTTGTCCATAG+TGG | + | chr4_4:16496060-16496079 | Msa0672210:intron | 45.0% | |
| AGCCCTGAAAACTCTTGACA+AGG | + | chr4_4:16496556-16496575 | Msa0672210:exon | 45.0% | |
| !!! | TTTTTTTTTTTTTAAACTAT+CGG | + | chr4_4:16494474-16494493 | Msa0672210:intron | 5.0% |
| !! | TTAATTATATATCATTATAA+GGG | - | chr4_4:16494893-16494912 | None:intergenic | 5.0% |
| !!! | TTTTTTGTTTATAAAAAAAA+TGG | + | chr4_4:16495076-16495095 | Msa0672210:intron | 5.0% |
| CAAAGCGAGGTTAAAGGCTC+TGG | + | chr4_4:16491746-16491765 | Msa0672210:CDS | 50.0% | |
| AAGGAGGGTGGTAGTTTGGT+TGG | + | chr4_4:16492071-16492090 | Msa0672210:intron | 50.0% | |
| TGTAGGACACTGAAGCCTGT+TGG | - | chr4_4:16492258-16492277 | None:intergenic | 50.0% | |
| AACACTCATTCGAGGCGAGT+CGG | + | chr4_4:16492367-16492386 | Msa0672210:intron | 50.0% | |
| AGACTCAATGGCAGAGTTGG+TGG | + | chr4_4:16492550-16492569 | Msa0672210:intron | 50.0% | |
| !! | TGGCAGAGTTGGTGGAAAAG+TGG | + | chr4_4:16492558-16492577 | Msa0672210:intron | 50.0% |
| CAGCTGGGCTCCTCTATATA+AGG | - | chr4_4:16492606-16492625 | None:intergenic | 50.0% | |
| TCACAGAGTCAGTCACAGCT+GGG | - | chr4_4:16492621-16492640 | None:intergenic | 50.0% | |
| TTCACAGAGTCAGTCACAGC+TGG | - | chr4_4:16492622-16492641 | None:intergenic | 50.0% | |
| ! | GTGACTGACTCTGTGAAACC+CGG | + | chr4_4:16492625-16492644 | Msa0672210:intron | 50.0% |
| GTTGGCACAATGGCACTTGA+GGG | - | chr4_4:16492753-16492772 | None:intergenic | 50.0% | |
| TGTTGGCACAATGGCACTTG+AGG | - | chr4_4:16492754-16492773 | None:intergenic | 50.0% | |
| !! | CACAGGACTTGTTGGCACAA+TGG | - | chr4_4:16492763-16492782 | None:intergenic | 50.0% |
| TGTGCCAACAAGTCCTGTGT+TGG | + | chr4_4:16492764-16492783 | Msa0672210:intron | 50.0% | |
| TGGTCCAACACAGGACTTGT+TGG | - | chr4_4:16492771-16492790 | None:intergenic | 50.0% | |
| TCCCTCATTAGTCGGTCCTT+CGG | + | chr4_4:16492852-16492871 | Msa0672210:intron | 50.0% | |
| TTGGCCTGCAGTTAGTTGCA+GGG | - | chr4_4:16493902-16493921 | None:intergenic | 50.0% | |
| AGCTTCTGCAGAGTCTTGGA+GGG | - | chr4_4:16494118-16494137 | None:intergenic | 50.0% | |
| AAGCTTCTGCAGAGTCTTGG+AGG | - | chr4_4:16494119-16494138 | None:intergenic | 50.0% | |
| GACTGTAGGGAACATCAGCA+AGG | + | chr4_4:16494155-16494174 | Msa0672210:CDS | 50.0% | |
| AATACCGGGTTCGATTCCCA+GGG | + | chr4_4:16495205-16495224 | Msa0672210:intron | 50.0% | |
| ATTAGTCGCCCACCTTTGGT+GGG | + | chr4_4:16495272-16495291 | Msa0672210:intron | 50.0% | |
| ! | TTTGGCATCACTTTGAGGGG+TGG | + | chr4_4:16496655-16496674 | Msa0672210:three_prime_UTR | 50.0% |
| !! | GGCTCTGGGTTTACCCCAAA+TGG | + | chr4_4:16491761-16491780 | Msa0672210:CDS | 55.0% |
| AATCTCACCGTCCACCAGCA+GGG | - | chr4_4:16492830-16492849 | None:intergenic | 55.0% | |
| GCCGAAGGACCGACTAATGA+GGG | - | chr4_4:16492856-16492875 | None:intergenic | 55.0% | |
| AGCCGAAGGACCGACTAATG+AGG | - | chr4_4:16492857-16492876 | None:intergenic | 55.0% | |
| !! | CAGGTTACCCAAAGGTGCCA+TGG | + | chr4_4:16493501-16493520 | Msa0672210:intron | 55.0% |
| CTTGGCCTGCAGTTAGTTGC+AGG | - | chr4_4:16493903-16493922 | None:intergenic | 55.0% | |
| GCAGCCGACTAGCAAACTGT+TGG | - | chr4_4:16494333-16494352 | None:intergenic | 55.0% | |
| TAGTCGGCTGCAAATGACCG+AGG | + | chr4_4:16494342-16494361 | Msa0672210:CDS | 55.0% | |
| GCTCCTTCCAAGGACGTATC+CGG | + | chr4_4:16495180-16495199 | Msa0672210:intron | 55.0% | |
| CTCCTTCCAAGGACGTATCC+GGG | + | chr4_4:16495181-16495200 | Msa0672210:intron | 55.0% | |
| TCCTTCCAAGGACGTATCCG+GGG | + | chr4_4:16495182-16495201 | Msa0672210:intron | 55.0% | |
| GTATTCCCCGGATACGTCCT+TGG | - | chr4_4:16495190-16495209 | None:intergenic | 55.0% | |
| AGGACGTATCCGGGGAATAC+CGG | + | chr4_4:16495190-16495209 | Msa0672210:intron | 55.0% | |
| GAATCGAACCCGGTATTCCC+CGG | - | chr4_4:16495202-16495221 | None:intergenic | 55.0% | |
| GAATACCGGGTTCGATTCCC+AGG | + | chr4_4:16495204-16495223 | Msa0672210:intron | 55.0% | |
| ATACCGGGTTCGATTCCCAG+GGG | + | chr4_4:16495206-16495225 | Msa0672210:intron | 55.0% | |
| CCAAAGGTGGGCGACTAATC+CGG | - | chr4_4:16495271-16495290 | None:intergenic | 55.0% | |
| ! | GATTAGTCGCCCACCTTTGG+TGG | + | chr4_4:16495271-16495290 | Msa0672210:intron | 55.0% |
| GTTTCCGACCCACCAAAGGT+GGG | - | chr4_4:16495283-16495302 | None:intergenic | 55.0% | |
| ! | ACCTTTGGTGGGTCGGAAAC+CGG | + | chr4_4:16495283-16495302 | Msa0672210:intron | 55.0% |
| ! | GGTGGAGAGCATGACCACAA+TGG | + | chr4_4:16496673-16496692 | Msa0672210:three_prime_UTR | 55.0% |
| GCGAGTCGGACAACTCTGGT+TGG | + | chr4_4:16492381-16492400 | Msa0672210:intron | 60.0% | |
| TGACTCTGTGAAACCCGGCG+AGG | + | chr4_4:16492630-16492649 | Msa0672210:intron | 60.0% | |
| TCTGTGAAACCCGGCGAGGA+AGG | + | chr4_4:16492634-16492653 | Msa0672210:intron | 60.0% | |
| GCTTCAATTGGGTCCCCTGC+TGG | + | chr4_4:16492813-16492832 | Msa0672210:intron | 60.0% | |
| TCAATTGGGTCCCCTGCTGG+TGG | + | chr4_4:16492816-16492835 | Msa0672210:intron | 60.0% | |
| ATCTCACCGTCCACCAGCAG+GGG | - | chr4_4:16492829-16492848 | None:intergenic | 60.0% | |
| CAATCTCACCGTCCACCAGC+AGG | - | chr4_4:16492831-16492850 | None:intergenic | 60.0% | |
| ! | CTGCTGGTGGACGGTGAGAT+TGG | + | chr4_4:16492829-16492848 | Msa0672210:intron | 60.0% |
| GAACTTGGGCTCCAGTGGCA+AGG | + | chr4_4:16495156-16495175 | Msa0672210:intron | 60.0% | |
| TGGAAGGAGCTCCTTGCCAC+TGG | - | chr4_4:16495170-16495189 | None:intergenic | 60.0% | |
| GTGGCAAGGAGCTCCTTCCA+AGG | + | chr4_4:16495170-16495189 | Msa0672210:intron | 60.0% | |
| TCCCCGGATACGTCCTTGGA+AGG | - | chr4_4:16495186-16495205 | None:intergenic | 60.0% | |
| GGACGTATCCGGGGAATACC+GGG | + | chr4_4:16495191-16495210 | Msa0672210:intron | 60.0% | |
| TACCGGGTTCGATTCCCAGG+GGG | + | chr4_4:16495207-16495226 | Msa0672210:intron | 60.0% | |
| TTCCCCCTGGGAATCGAACC+CGG | - | chr4_4:16495212-16495231 | None:intergenic | 60.0% | |
| TTCCCAGGGGGAACAACGCT+TGG | + | chr4_4:16495219-16495238 | Msa0672210:intron | 60.0% | |
| ! | CTAATCCGGCTCGTGCGTAG+AGG | - | chr4_4:16495257-16495276 | None:intergenic | 60.0% |
| !! | CCGGATTAGTCGCCCACCTT+TGG | + | chr4_4:16495268-16495287 | Msa0672210:intron | 60.0% |
| GGTTTCCGACCCACCAAAGG+TGG | - | chr4_4:16495284-16495303 | None:intergenic | 60.0% | |
| ! | ACCGGTTTCCGACCCACCAA+AGG | - | chr4_4:16495287-16495306 | None:intergenic | 60.0% |
| GGCGTGTTGCGGTGTCCAAC+AGG | + | chr4_4:16492240-16492259 | Msa0672210:intron | 65.0% | |
| CGAGGCGAGTCGGACAACTC+TGG | + | chr4_4:16492377-16492396 | Msa0672210:intron | 65.0% | |
| TGAAACCCGGCGAGGAAGGC+AGG | + | chr4_4:16492638-16492657 | Msa0672210:intron | 65.0% | |
| GAACTCCTGCCTTCCTCGCC+GGG | - | chr4_4:16492646-16492665 | None:intergenic | 65.0% | |
| CGAACTCCTGCCTTCCTCGC+CGG | - | chr4_4:16492647-16492666 | None:intergenic | 65.0% | |
| TTGGGTCCCCTGCTGGTGGA+CGG | + | chr4_4:16492820-16492839 | Msa0672210:intron | 65.0% | |
| ! | GGCCAAGCGTTGTTCCCCCT+GGG | - | chr4_4:16495224-16495243 | None:intergenic | 65.0% |
| ! | TGGCCAAGCGTTGTTCCCCC+TGG | - | chr4_4:16495225-16495244 | None:intergenic | 65.0% |
| ! | GTGCGTAGAGGCATGCGCAC+TGG | - | chr4_4:16495245-16495264 | None:intergenic | 65.0% |
| GCATGCCTCTACGCACGAGC+CGG | + | chr4_4:16495249-16495268 | Msa0672210:intron | 65.0% | |
| ! | GTCGCCCACCTTTGGTGGGT+CGG | + | chr4_4:16495276-16495295 | Msa0672210:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 16491521 | 16496889 | 16491521 | ID=Msa0672210;Name=Msa0672210 |
| chr4_4 | mRNA | 16491521 | 16496889 | 16491521 | ID=Msa0672210-mRNA-1;Parent=Msa0672210;Name=Msa0672210-mRNA-1;_AED=0.03;_eAED=0.03;_QI=64|1|1|1|1|1|6|316|292 |
| chr4_4 | exon | 16491521 | 16491971 | 16491521 | ID=Msa0672210-mRNA-1:exon:4938;Parent=Msa0672210-mRNA-1 |
| chr4_4 | exon | 16493917 | 16494015 | 16493917 | ID=Msa0672210-mRNA-1:exon:4939;Parent=Msa0672210-mRNA-1 |
| chr4_4 | exon | 16494102 | 16494239 | 16494102 | ID=Msa0672210-mRNA-1:exon:4940;Parent=Msa0672210-mRNA-1 |
| chr4_4 | exon | 16494337 | 16494397 | 16494337 | ID=Msa0672210-mRNA-1:exon:4941;Parent=Msa0672210-mRNA-1 |
| chr4_4 | exon | 16495760 | 16495884 | 16495760 | ID=Msa0672210-mRNA-1:exon:4942;Parent=Msa0672210-mRNA-1 |
| chr4_4 | exon | 16496505 | 16496889 | 16496505 | ID=Msa0672210-mRNA-1:exon:4943;Parent=Msa0672210-mRNA-1 |
| chr4_4 | five_prime_UTR | 16491521 | 16491584 | 16491521 | ID=Msa0672210-mRNA-1:five_prime_utr;Parent=Msa0672210-mRNA-1 |
| chr4_4 | CDS | 16491585 | 16491971 | 16491585 | ID=Msa0672210-mRNA-1:cds;Parent=Msa0672210-mRNA-1 |
| chr4_4 | CDS | 16493917 | 16494015 | 16493917 | ID=Msa0672210-mRNA-1:cds;Parent=Msa0672210-mRNA-1 |
| chr4_4 | CDS | 16494102 | 16494239 | 16494102 | ID=Msa0672210-mRNA-1:cds;Parent=Msa0672210-mRNA-1 |
| chr4_4 | CDS | 16494337 | 16494397 | 16494337 | ID=Msa0672210-mRNA-1:cds;Parent=Msa0672210-mRNA-1 |
| chr4_4 | CDS | 16495760 | 16495884 | 16495760 | ID=Msa0672210-mRNA-1:cds;Parent=Msa0672210-mRNA-1 |
| chr4_4 | CDS | 16496505 | 16496573 | 16496505 | ID=Msa0672210-mRNA-1:cds;Parent=Msa0672210-mRNA-1 |
| chr4_4 | three_prime_UTR | 16496574 | 16496889 | 16496574 | ID=Msa0672210-mRNA-1:three_prime_utr;Parent=Msa0672210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
