AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0469160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0469160 MtrunA17_Chr3g0123691 98.675 302 3 1 1 301 1 302 0.0 610
Msa0469160 MtrunA17_Chr8g0381741 58.716 327 93 11 1 301 1 311 1.01e-115 336
Msa0469160 MtrunA17_Chr3g0119291 40.614 293 135 7 1 292 1 255 3.43e-50 166
Msa0469160 MtrunA17_Chr5g0415941 57.258 124 49 1 45 164 69 192 1.94e-39 140
Msa0469160 MtrunA17_Chr8g0362751 57.377 122 48 1 47 168 81 198 3.16e-39 139
Msa0469160 MtrunA17_Chr8g0362151 51.656 151 60 4 25 165 33 180 4.38e-39 138
Msa0469160 MtrunA17_Chr5g0416391 57.500 120 48 1 46 165 64 180 2.22e-37 134
Msa0469160 MtrunA17_Chr4g0060031 52.174 138 53 2 27 160 68 196 4.85e-37 134
Msa0469160 MtrunA17_Chr6g0450991 62.264 106 40 0 58 163 66 171 1.38e-36 132
Msa0469160 MtrunA17_Chr6g0453021 53.226 124 49 1 31 154 77 191 1.62e-35 129
Msa0469160 MtrunA17_Chr7g0217111 59.794 97 39 0 58 154 79 175 2.78e-30 115
Msa0469160 MtrunA17_Chr7g0265521 46.774 124 57 2 35 158 41 155 7.83e-29 110
Msa0469160 MtrunA17_Chr8g0346251 38.830 188 102 6 66 241 48 234 8.75e-27 105
Msa0469160 MtrunA17_Chr3g0127511 50.549 91 45 0 61 151 40 130 5.66e-25 100
Msa0469160 MtrunA17_Chr1g0179581 50.000 92 39 1 58 149 27 111 1.39e-24 95.5
Msa0469160 MtrunA17_Chr5g0403701 57.317 82 35 0 51 132 45 126 8.00e-23 94.0
Msa0469160 MtrunA17_Chr5g0403691 48.182 110 57 0 51 160 45 154 8.31e-23 94.0
Msa0469160 MtrunA17_Chr4g0055851 41.406 128 67 2 51 178 112 231 1.28e-18 84.0
Msa0469160 MtrunA17_Chr1g0151971 42.500 120 62 1 59 178 130 242 1.26e-17 81.3
Msa0469160 MtrunA17_Chr2g0308611 36.879 141 78 3 56 195 197 327 4.06e-17 80.5
Msa0469160 MtrunA17_Chr4g0054421 41.085 129 65 3 51 178 119 237 8.15e-17 78.6
Msa0469160 MtrunA17_Chr5g0399491 40.625 128 68 2 51 178 128 247 1.63e-16 78.2
Msa0469160 MtrunA17_Chr1g0175651 37.063 143 81 2 42 184 137 270 2.68e-16 77.8
Msa0469160 MtrunA17_Chr5g0400781 42.718 103 52 1 51 153 115 210 6.05e-16 76.3
Msa0469160 MtrunA17_Chr8g0335131 41.322 121 61 3 59 178 146 257 1.60e-15 75.5
Msa0469160 MtrunA17_Chr4g0044091 41.346 104 53 2 54 156 60 156 1.69e-15 73.6
Msa0469160 MtrunA17_Chr7g0258831 36.478 159 80 4 32 178 121 270 7.70e-15 73.6
Msa0469160 MtrunA17_Chr4g0071411 45.055 91 43 1 62 152 91 174 8.67e-15 72.0
Msa0469160 MtrunA17_Chr3g0135331 50.000 72 36 0 59 130 145 216 1.06e-12 67.4
Msa0469160 MtrunA17_Chr2g0299031 37.288 118 64 3 42 156 63 173 1.72e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0469160 AT4G40060.1 47.284 313 134 15 1 301 1 294 4.58e-71 222
Msa0469160 AT2G22430.1 45.181 332 129 14 1 301 2 311 3.21e-63 202
Msa0469160 AT5G65310.1 42.296 331 141 12 1 301 1 311 6.62e-62 199
Msa0469160 AT5G65310.2 44.097 288 117 9 38 301 26 293 1.48e-60 195
Msa0469160 AT3G01470.1 63.810 105 37 1 58 161 67 171 4.71e-38 136
Msa0469160 AT1G69780.1 55.000 120 51 1 46 165 72 188 1.66e-36 132
Msa0469160 AT5G15150.1 48.428 159 78 2 42 197 95 252 5.48e-36 131
Msa0469160 AT3G01220.1 53.982 113 50 1 44 154 70 182 1.26e-32 122
Msa0469160 AT2G46680.1 40.123 162 91 2 50 205 23 184 3.93e-30 115
Msa0469160 AT1G26960.1 41.011 178 93 5 24 201 41 206 2.06e-29 112
Msa0469160 AT2G46680.2 40.000 160 92 2 50 205 23 182 3.94e-29 112
Msa0469160 AT3G61890.1 48.936 94 48 0 62 155 33 126 4.79e-26 103
Msa0469160 AT1G27045.1 49.565 115 58 0 45 159 54 168 1.02e-25 102
Msa0469160 AT1G27045.5 49.565 115 58 0 45 159 11 125 2.11e-25 100
Msa0469160 AT1G27045.3 49.565 115 58 0 45 159 11 125 2.11e-25 100
Msa0469160 AT1G27045.2 49.565 115 58 0 45 159 3 117 2.57e-25 100
Msa0469160 AT5G03790.1 43.200 125 55 3 59 180 77 188 4.83e-25 100
Msa0469160 AT1G27045.4 49.533 107 54 0 45 151 54 160 7.76e-24 97.8
Msa0469160 AT5G03790.2 50.000 90 38 1 59 148 77 159 9.56e-23 93.6
Msa0469160 AT4G36740.1 46.789 109 51 1 52 160 48 149 2.01e-21 90.5
Msa0469160 AT2G18550.1 37.838 185 89 6 46 226 50 212 2.08e-21 90.5
Msa0469160 AT4G36740.2 46.789 109 51 1 52 160 49 150 2.14e-21 90.5
Msa0469160 AT5G66700.1 60.811 74 29 0 59 132 71 144 3.43e-21 90.1
Msa0469160 AT2G36610.1 39.535 129 61 3 38 158 52 171 9.06e-21 88.2
Msa0469160 AT5G53980.1 53.521 71 33 0 59 129 11 81 4.85e-17 77.0
Msa0469160 AT2G01430.1 38.129 139 73 5 42 179 122 248 2.14e-16 78.2
Msa0469160 AT4G16780.1 39.062 128 70 2 51 178 121 240 2.95e-16 77.8
Msa0469160 AT4G37790.1 42.718 103 52 1 51 153 118 213 5.54e-16 77.0
Msa0469160 AT2G22800.1 44.660 103 50 1 51 153 105 200 1.36e-15 75.9
Msa0469160 AT5G06710.1 35.758 165 81 5 57 221 188 327 2.42e-15 75.9
Msa0469160 AT4G17460.1 43.000 100 50 1 54 153 130 222 1.77e-14 72.8
Msa0469160 AT5G47370.1 42.718 103 52 1 51 153 122 217 2.20e-14 72.4
Msa0469160 AT2G44910.1 39.167 120 65 2 59 178 163 274 9.71e-14 70.9
Msa0469160 AT3G60390.1 38.525 122 67 2 57 178 160 273 6.77e-13 68.6
Msa0469160 AT2G01430.2 45.714 70 38 0 42 111 122 191 8.86e-11 60.8

Find 56 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAGCTTCTCTTTCCTTTC+AGG 0.097054 3_3:-70903295 None:intergenic
TCCATCTTGCTCTCCTGTTT+TGG 0.182991 3_3:-70903360 None:intergenic
TCTTCACATGATAAGATTTC+TGG 0.185572 3_3:-70904316 None:intergenic
GTCATAATCCAAGTGATCTT+TGG 0.268232 3_3:-70904117 None:intergenic
CCATACACATGTTTGTTCCT+TGG 0.325978 3_3:-70903124 None:intergenic
AAACAGTTGGAAAGAGATTA+TGG 0.328477 3_3:+70903388 Msa0469160:CDS
GGAATTGATGTTTCTGAAGA+TGG 0.346885 3_3:-70904083 None:intergenic
TAGCTGTTTGGTTCCAAAAC+AGG 0.367018 3_3:+70903347 Msa0469160:CDS
ATTAATGATTAACCTGTTGA+TGG 0.378350 3_3:-70902950 None:intergenic
GAAGGATGTGTTGAAGAAAC+TGG 0.381674 3_3:+70903187 Msa0469160:CDS
CAATTCATGGAAGAAGATTC+AGG 0.391972 3_3:-70904284 None:intergenic
GAGAAGCTTGCCATTGAACT+TGG 0.393138 3_3:+70903307 Msa0469160:CDS
AGTGGATCAAGTTAAGGCTT+TGG 0.405768 3_3:+70903240 Msa0469160:CDS
CTGGTACTGGAAACAATTCA+TGG 0.413109 3_3:-70904297 None:intergenic
TGATCTTTGGATTCTGAACT+AGG 0.419543 3_3:-70904104 None:intergenic
AGCCTAGACAAGTAGCTGTT+TGG 0.421533 3_3:+70903335 Msa0469160:CDS
ATCACAATCTCTCCATCAAC+AGG 0.446409 3_3:+70902938 Msa0469160:CDS
CATGATAAGATTTCTGGTAC+TGG 0.447688 3_3:-70904310 None:intergenic
AGACTTGAAAGACGGTTCTT+CGG 0.453631 3_3:+70904196 Msa0469160:CDS
GAACCGTCTTTCAAGTCTAC+TGG 0.456218 3_3:-70904191 None:intergenic
ACTAAGAGTGGATCAAGTTA+AGG 0.482047 3_3:+70903234 Msa0469160:CDS
TTTCAATCAATGATGTTGGA+TGG 0.484310 3_3:+70903154 Msa0469160:CDS
TGAAGAAGAATCTGAGGTGT+TGG 0.489416 3_3:-70902906 None:intergenic
TTGGATGGATTTGAAGAAGA+AGG 0.493565 3_3:+70903169 Msa0469160:CDS
CCAAGGAACAAACATGTGTA+TGG 0.493903 3_3:+70903124 Msa0469160:CDS
GGTCAGGACAGTACCATTGT+AGG 0.494776 3_3:-70904406 None:intergenic
TTCAGAATCCAAAGATCACT+TGG 0.496610 3_3:+70904109 Msa0469160:CDS
AACAACAATGATGTTGGTAT+TGG 0.500792 3_3:+70904149 Msa0469160:CDS
GAACAAACATGTGTATGGTA+TGG 0.501372 3_3:+70903129 Msa0469160:CDS
AGGAGTTGAAGAAGAATCTG+AGG 0.515030 3_3:-70902912 None:intergenic
GGAGTTTCAATCAATGATGT+TGG 0.518927 3_3:+70903150 Msa0469160:CDS
GAAGAAGAATCTGAGGTGTT+GGG 0.524763 3_3:-70902905 None:intergenic
GAATTGATGTTTCTGAAGAT+GGG 0.525493 3_3:-70904082 None:intergenic
CAGCGCAATTTCTTCATCCG+TGG 0.525914 3_3:+70904229 Msa0469160:CDS
GAAATCTTATCATGTGAAGA+TGG 0.526190 3_3:+70904319 Msa0469160:CDS
AAGATTCAGGAGACAACAAA+AGG 0.537961 3_3:-70904271 None:intergenic
AAGGAATTGAAATCAAAGCT+TGG 0.543819 3_3:+70903978 Msa0469160:CDS
CACGGATGAAGAAATTGCGC+TGG 0.545048 3_3:-70904228 None:intergenic
AGGCTGCAATCCAAGTTCAA+TGG 0.549394 3_3:-70903317 None:intergenic
ATAATCAACAACAATGATGT+TGG 0.562748 3_3:+70904143 Msa0469160:CDS
AAAACAAGCTTGAACCTGAA+AGG 0.570660 3_3:+70903281 Msa0469160:CDS
GGACAGTACCATTGTAGGGT+TGG 0.574109 3_3:-70904401 None:intergenic
TCCAAAACAGGAGAGCAAGA+TGG 0.577020 3_3:+70903359 Msa0469160:CDS
GAAGAAACGTAGACTAAGAG+TGG 0.584527 3_3:+70903222 Msa0469160:CDS
GTCAGGACAGTACCATTGTA+GGG 0.584883 3_3:-70904405 None:intergenic
AACCAAACAGCTACTTGTCT+AGG 0.590010 3_3:-70903337 None:intergenic
CAATTTCTTAAGTGCCGACG+AGG 0.592005 3_3:+70904349 Msa0469160:CDS
AAGATGGAAGACTAAACAGT+TGG 0.598726 3_3:+70903375 Msa0469160:CDS
TTTCCAGTAGACTTGAAAGA+CGG 0.606889 3_3:+70904188 Msa0469160:CDS
ATTTAGAGGAACATAGTCCA+AGG 0.623460 3_3:+70903107 Msa0469160:intron
TTCATCACAAGATTCAAGCA+TGG 0.624852 3_3:-70904048 None:intergenic
AATGGTACTGTCCTGACCAG+TGG 0.629087 3_3:+70904411 Msa0469160:CDS
AGCAAGCACCAACCCTACAA+TGG 0.659727 3_3:+70904393 Msa0469160:CDS
ATCTTATCATGTGAAGATGG+AGG 0.661383 3_3:+70904322 Msa0469160:CDS
CTGCTGACTCTGAAGAACCA+CGG 0.698815 3_3:-70904246 None:intergenic
GATGGAGAGATTGTGATGAG+AGG 0.700166 3_3:-70902932 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCTTCTTTCTTTCTATTTT+TGG + chr3_3:70903005-70903024 Msa0469160:intron 20.0%
!! AACGTAAAAGTTAAAAAACA+TGG - chr3_3:70903037-70903056 None:intergenic 20.0%
!!! ATGTTTTTTAACTTTTACGT+TGG + chr3_3:70903036-70903055 Msa0469160:intron 20.0%
!!! TTTGTTGTATTTACAGATTA+AGG + chr3_3:70903959-70903978 Msa0469160:intron 20.0%
!!! TTCTTCTTTCTTTCTATTTT+TGG + chr3_3:70903005-70903024 Msa0469160:intron 20.0%
!! AACGTAAAAGTTAAAAAACA+TGG - chr3_3:70903037-70903056 None:intergenic 20.0%
!!! ATGTTTTTTAACTTTTACGT+TGG + chr3_3:70903036-70903055 Msa0469160:intron 20.0%
!!! TTTGTTGTATTTACAGATTA+AGG + chr3_3:70903959-70903978 Msa0469160:intron 20.0%
! ATTAATGATTAACCTGTTGA+TGG - chr3_3:70902953-70902972 None:intergenic 25.0%
!!! TTCTTTCTTTCTATTTTTGG+AGG + chr3_3:70903008-70903027 Msa0469160:intron 25.0%
!!! TCTTTCTTTCTATTTTTGGA+GGG + chr3_3:70903009-70903028 Msa0469160:intron 25.0%
!!! CTTTTTTTGCATTGATTTAG+AGG + chr3_3:70903093-70903112 Msa0469160:intron 25.0%
! TTATAGTTAAGTTACTACTG+TGG - chr3_3:70903510-70903529 None:intergenic 25.0%
!!! TGTGTTATTTAGTGTATGTT+TGG + chr3_3:70903745-70903764 Msa0469160:intron 25.0%
! TATTTAGTGTATGTTTGGAT+TGG + chr3_3:70903750-70903769 Msa0469160:intron 25.0%
! TGAATTTAGCAAAATCACTT+TGG + chr3_3:70903776-70903795 Msa0469160:intron 25.0%
! GATCTTAGTTATGAAATTGT+AGG + chr3_3:70903840-70903859 Msa0469160:intron 25.0%
!!! AAAAAGCACAATCAATGTTT+TGG + chr3_3:70904010-70904029 Msa0469160:CDS 25.0%
! ATAATCAACAACAATGATGT+TGG + chr3_3:70904143-70904162 Msa0469160:CDS 25.0%
! ATTAATGATTAACCTGTTGA+TGG - chr3_3:70902953-70902972 None:intergenic 25.0%
!!! TTCTTTCTTTCTATTTTTGG+AGG + chr3_3:70903008-70903027 Msa0469160:intron 25.0%
!!! TCTTTCTTTCTATTTTTGGA+GGG + chr3_3:70903009-70903028 Msa0469160:intron 25.0%
!!! CTTTTTTTGCATTGATTTAG+AGG + chr3_3:70903093-70903112 Msa0469160:intron 25.0%
! TTATAGTTAAGTTACTACTG+TGG - chr3_3:70903510-70903529 None:intergenic 25.0%
!!! TGTGTTATTTAGTGTATGTT+TGG + chr3_3:70903745-70903764 Msa0469160:intron 25.0%
! TATTTAGTGTATGTTTGGAT+TGG + chr3_3:70903750-70903769 Msa0469160:intron 25.0%
! TGAATTTAGCAAAATCACTT+TGG + chr3_3:70903776-70903795 Msa0469160:intron 25.0%
! GATCTTAGTTATGAAATTGT+AGG + chr3_3:70903840-70903859 Msa0469160:intron 25.0%
!!! AAAAAGCACAATCAATGTTT+TGG + chr3_3:70904010-70904029 Msa0469160:CDS 25.0%
! ATAATCAACAACAATGATGT+TGG + chr3_3:70904143-70904162 Msa0469160:CDS 25.0%
TTTCAATCAATGATGTTGGA+TGG + chr3_3:70903154-70903173 Msa0469160:CDS 30.0%
AAACAGTTGGAAAGAGATTA+TGG + chr3_3:70903388-70903407 Msa0469160:CDS 30.0%
! AGATAACAAAGCTTTTCACA+AGG + chr3_3:70903465-70903484 Msa0469160:CDS 30.0%
AAGGAATTGAAATCAAAGCT+TGG + chr3_3:70903978-70903997 Msa0469160:CDS 30.0%
! GAATTGATGTTTCTGAAGAT+GGG - chr3_3:70904085-70904104 None:intergenic 30.0%
AACAACAATGATGTTGGTAT+TGG + chr3_3:70904149-70904168 Msa0469160:CDS 30.0%
TCTTCACATGATAAGATTTC+TGG - chr3_3:70904319-70904338 None:intergenic 30.0%
GAAATCTTATCATGTGAAGA+TGG + chr3_3:70904319-70904338 Msa0469160:CDS 30.0%
TTTCAATCAATGATGTTGGA+TGG + chr3_3:70903154-70903173 Msa0469160:CDS 30.0%
AAACAGTTGGAAAGAGATTA+TGG + chr3_3:70903388-70903407 Msa0469160:CDS 30.0%
! AGATAACAAAGCTTTTCACA+AGG + chr3_3:70903465-70903484 Msa0469160:CDS 30.0%
AAGGAATTGAAATCAAAGCT+TGG + chr3_3:70903978-70903997 Msa0469160:CDS 30.0%
! GAATTGATGTTTCTGAAGAT+GGG - chr3_3:70904085-70904104 None:intergenic 30.0%
AACAACAATGATGTTGGTAT+TGG + chr3_3:70904149-70904168 Msa0469160:CDS 30.0%
TCTTCACATGATAAGATTTC+TGG - chr3_3:70904319-70904338 None:intergenic 30.0%
GAAATCTTATCATGTGAAGA+TGG + chr3_3:70904319-70904338 Msa0469160:CDS 30.0%
ATTTAGAGGAACATAGTCCA+AGG + chr3_3:70903107-70903126 Msa0469160:intron 35.0%
GAACAAACATGTGTATGGTA+TGG + chr3_3:70903129-70903148 Msa0469160:CDS 35.0%
GGAGTTTCAATCAATGATGT+TGG + chr3_3:70903150-70903169 Msa0469160:CDS 35.0%
! TTGGATGGATTTGAAGAAGA+AGG + chr3_3:70903169-70903188 Msa0469160:CDS 35.0%
ACTAAGAGTGGATCAAGTTA+AGG + chr3_3:70903234-70903253 Msa0469160:CDS 35.0%
AAAACAAGCTTGAACCTGAA+AGG + chr3_3:70903281-70903300 Msa0469160:CDS 35.0%
AAGATGGAAGACTAAACAGT+TGG + chr3_3:70903375-70903394 Msa0469160:CDS 35.0%
! TAACAAAGCTTTTCACAAGG+AGG + chr3_3:70903468-70903487 Msa0469160:CDS 35.0%
AGATCAAGTACTTTCACAAG+AGG - chr3_3:70903825-70903844 None:intergenic 35.0%
! GGCAAGTATTTAACTTCTCT+AGG + chr3_3:70903861-70903880 Msa0469160:intron 35.0%
!!! CACAATCAATGTTTTGGTGA+AGG + chr3_3:70904016-70904035 Msa0469160:CDS 35.0%
!!! AATCAATGTTTTGGTGAAGG+AGG + chr3_3:70904019-70904038 Msa0469160:CDS 35.0%
TTCATCACAAGATTCAAGCA+TGG - chr3_3:70904051-70904070 None:intergenic 35.0%
! GGAATTGATGTTTCTGAAGA+TGG - chr3_3:70904086-70904105 None:intergenic 35.0%
TGATCTTTGGATTCTGAACT+AGG - chr3_3:70904107-70904126 None:intergenic 35.0%
TTCAGAATCCAAAGATCACT+TGG + chr3_3:70904109-70904128 Msa0469160:CDS 35.0%
GTCATAATCCAAGTGATCTT+TGG - chr3_3:70904120-70904139 None:intergenic 35.0%
TTTCCAGTAGACTTGAAAGA+CGG + chr3_3:70904188-70904207 Msa0469160:CDS 35.0%
AAGATTCAGGAGACAACAAA+AGG - chr3_3:70904274-70904293 None:intergenic 35.0%
CAATTCATGGAAGAAGATTC+AGG - chr3_3:70904287-70904306 None:intergenic 35.0%
!! CATGATAAGATTTCTGGTAC+TGG - chr3_3:70904313-70904332 None:intergenic 35.0%
ATCTTATCATGTGAAGATGG+AGG + chr3_3:70904322-70904341 Msa0469160:CDS 35.0%
ATTTAGAGGAACATAGTCCA+AGG + chr3_3:70903107-70903126 Msa0469160:intron 35.0%
GAACAAACATGTGTATGGTA+TGG + chr3_3:70903129-70903148 Msa0469160:CDS 35.0%
GGAGTTTCAATCAATGATGT+TGG + chr3_3:70903150-70903169 Msa0469160:CDS 35.0%
! TTGGATGGATTTGAAGAAGA+AGG + chr3_3:70903169-70903188 Msa0469160:CDS 35.0%
ACTAAGAGTGGATCAAGTTA+AGG + chr3_3:70903234-70903253 Msa0469160:CDS 35.0%
AAAACAAGCTTGAACCTGAA+AGG + chr3_3:70903281-70903300 Msa0469160:CDS 35.0%
AAGATGGAAGACTAAACAGT+TGG + chr3_3:70903375-70903394 Msa0469160:CDS 35.0%
! TAACAAAGCTTTTCACAAGG+AGG + chr3_3:70903468-70903487 Msa0469160:CDS 35.0%
AGATCAAGTACTTTCACAAG+AGG - chr3_3:70903825-70903844 None:intergenic 35.0%
! GGCAAGTATTTAACTTCTCT+AGG + chr3_3:70903861-70903880 Msa0469160:intron 35.0%
!!! CACAATCAATGTTTTGGTGA+AGG + chr3_3:70904016-70904035 Msa0469160:CDS 35.0%
!!! AATCAATGTTTTGGTGAAGG+AGG + chr3_3:70904019-70904038 Msa0469160:CDS 35.0%
TTCATCACAAGATTCAAGCA+TGG - chr3_3:70904051-70904070 None:intergenic 35.0%
! GGAATTGATGTTTCTGAAGA+TGG - chr3_3:70904086-70904105 None:intergenic 35.0%
TGATCTTTGGATTCTGAACT+AGG - chr3_3:70904107-70904126 None:intergenic 35.0%
TTCAGAATCCAAAGATCACT+TGG + chr3_3:70904109-70904128 Msa0469160:CDS 35.0%
GTCATAATCCAAGTGATCTT+TGG - chr3_3:70904120-70904139 None:intergenic 35.0%
TTTCCAGTAGACTTGAAAGA+CGG + chr3_3:70904188-70904207 Msa0469160:CDS 35.0%
AAGATTCAGGAGACAACAAA+AGG - chr3_3:70904274-70904293 None:intergenic 35.0%
CAATTCATGGAAGAAGATTC+AGG - chr3_3:70904287-70904306 None:intergenic 35.0%
!! CATGATAAGATTTCTGGTAC+TGG - chr3_3:70904313-70904332 None:intergenic 35.0%
ATCTTATCATGTGAAGATGG+AGG + chr3_3:70904322-70904341 Msa0469160:CDS 35.0%
! GAAGAAGAATCTGAGGTGTT+GGG - chr3_3:70902908-70902927 None:intergenic 40.0%
! TGAAGAAGAATCTGAGGTGT+TGG - chr3_3:70902909-70902928 None:intergenic 40.0%
AGGAGTTGAAGAAGAATCTG+AGG - chr3_3:70902915-70902934 None:intergenic 40.0%
ATCACAATCTCTCCATCAAC+AGG + chr3_3:70902938-70902957 Msa0469160:CDS 40.0%
CCATACACATGTTTGTTCCT+TGG - chr3_3:70903127-70903146 None:intergenic 40.0%
CCAAGGAACAAACATGTGTA+TGG + chr3_3:70903124-70903143 Msa0469160:CDS 40.0%
GAAGGATGTGTTGAAGAAAC+TGG + chr3_3:70903187-70903206 Msa0469160:CDS 40.0%
GAAGAAACGTAGACTAAGAG+TGG + chr3_3:70903222-70903241 Msa0469160:CDS 40.0%
AGTGGATCAAGTTAAGGCTT+TGG + chr3_3:70903240-70903259 Msa0469160:CDS 40.0%
!! GGCTTTGGAGAAAAACTTTG+AGG + chr3_3:70903255-70903274 Msa0469160:CDS 40.0%
AACCAAACAGCTACTTGTCT+AGG - chr3_3:70903340-70903359 None:intergenic 40.0%
! TAGCTGTTTGGTTCCAAAAC+AGG + chr3_3:70903347-70903366 Msa0469160:CDS 40.0%
AGACTTGAAAGACGGTTCTT+CGG + chr3_3:70904196-70904215 Msa0469160:CDS 40.0%
! CTGGTACTGGAAACAATTCA+TGG - chr3_3:70904300-70904319 None:intergenic 40.0%
! GAAGAAGAATCTGAGGTGTT+GGG - chr3_3:70902908-70902927 None:intergenic 40.0%
! TGAAGAAGAATCTGAGGTGT+TGG - chr3_3:70902909-70902928 None:intergenic 40.0%
AGGAGTTGAAGAAGAATCTG+AGG - chr3_3:70902915-70902934 None:intergenic 40.0%
ATCACAATCTCTCCATCAAC+AGG + chr3_3:70902938-70902957 Msa0469160:CDS 40.0%
CCATACACATGTTTGTTCCT+TGG - chr3_3:70903127-70903146 None:intergenic 40.0%
CCAAGGAACAAACATGTGTA+TGG + chr3_3:70903124-70903143 Msa0469160:CDS 40.0%
GAAGGATGTGTTGAAGAAAC+TGG + chr3_3:70903187-70903206 Msa0469160:CDS 40.0%
GAAGAAACGTAGACTAAGAG+TGG + chr3_3:70903222-70903241 Msa0469160:CDS 40.0%
AGTGGATCAAGTTAAGGCTT+TGG + chr3_3:70903240-70903259 Msa0469160:CDS 40.0%
!! GGCTTTGGAGAAAAACTTTG+AGG + chr3_3:70903255-70903274 Msa0469160:CDS 40.0%
AACCAAACAGCTACTTGTCT+AGG - chr3_3:70903340-70903359 None:intergenic 40.0%
! TAGCTGTTTGGTTCCAAAAC+AGG + chr3_3:70903347-70903366 Msa0469160:CDS 40.0%
AGACTTGAAAGACGGTTCTT+CGG + chr3_3:70904196-70904215 Msa0469160:CDS 40.0%
! CTGGTACTGGAAACAATTCA+TGG - chr3_3:70904300-70904319 None:intergenic 40.0%
GATGGAGAGATTGTGATGAG+AGG - chr3_3:70902935-70902954 None:intergenic 45.0%
GCAAGCTTCTCTTTCCTTTC+AGG - chr3_3:70903298-70903317 None:intergenic 45.0%
GAGAAGCTTGCCATTGAACT+TGG + chr3_3:70903307-70903326 Msa0469160:CDS 45.0%
AGGCTGCAATCCAAGTTCAA+TGG - chr3_3:70903320-70903339 None:intergenic 45.0%
AGCCTAGACAAGTAGCTGTT+TGG + chr3_3:70903335-70903354 Msa0469160:CDS 45.0%
TCCAAAACAGGAGAGCAAGA+TGG + chr3_3:70903359-70903378 Msa0469160:CDS 45.0%
! TCCATCTTGCTCTCCTGTTT+TGG - chr3_3:70903363-70903382 None:intergenic 45.0%
! GAACCGTCTTTCAAGTCTAC+TGG - chr3_3:70904194-70904213 None:intergenic 45.0%
!! CAATTTCTTAAGTGCCGACG+AGG + chr3_3:70904349-70904368 Msa0469160:CDS 45.0%
GTCAGGACAGTACCATTGTA+GGG - chr3_3:70904408-70904427 None:intergenic 45.0%
GATGGAGAGATTGTGATGAG+AGG - chr3_3:70902935-70902954 None:intergenic 45.0%
GCAAGCTTCTCTTTCCTTTC+AGG - chr3_3:70903298-70903317 None:intergenic 45.0%
GAGAAGCTTGCCATTGAACT+TGG + chr3_3:70903307-70903326 Msa0469160:CDS 45.0%
AGGCTGCAATCCAAGTTCAA+TGG - chr3_3:70903320-70903339 None:intergenic 45.0%
AGCCTAGACAAGTAGCTGTT+TGG + chr3_3:70903335-70903354 Msa0469160:CDS 45.0%
TCCAAAACAGGAGAGCAAGA+TGG + chr3_3:70903359-70903378 Msa0469160:CDS 45.0%
! TCCATCTTGCTCTCCTGTTT+TGG - chr3_3:70903363-70903382 None:intergenic 45.0%
! GAACCGTCTTTCAAGTCTAC+TGG - chr3_3:70904194-70904213 None:intergenic 45.0%
!! CAATTTCTTAAGTGCCGACG+AGG + chr3_3:70904349-70904368 Msa0469160:CDS 45.0%
GTCAGGACAGTACCATTGTA+GGG - chr3_3:70904408-70904427 None:intergenic 45.0%
CACGGATGAAGAAATTGCGC+TGG - chr3_3:70904231-70904250 None:intergenic 50.0%
CAGCGCAATTTCTTCATCCG+TGG + chr3_3:70904229-70904248 Msa0469160:CDS 50.0%
!! CTGCTGACTCTGAAGAACCA+CGG - chr3_3:70904249-70904268 None:intergenic 50.0%
GAAAAAGTTGCACGCCTCGT+CGG - chr3_3:70904366-70904385 None:intergenic 50.0%
!! CGAGGCGTGCAACTTTTTCT+CGG + chr3_3:70904367-70904386 Msa0469160:CDS 50.0%
AGCAAGCACCAACCCTACAA+TGG + chr3_3:70904393-70904412 Msa0469160:CDS 50.0%
GGACAGTACCATTGTAGGGT+TGG - chr3_3:70904404-70904423 None:intergenic 50.0%
GGTCAGGACAGTACCATTGT+AGG - chr3_3:70904409-70904428 None:intergenic 50.0%
AATGGTACTGTCCTGACCAG+TGG + chr3_3:70904411-70904430 Msa0469160:CDS 50.0%
CACGGATGAAGAAATTGCGC+TGG - chr3_3:70904231-70904250 None:intergenic 50.0%
CAGCGCAATTTCTTCATCCG+TGG + chr3_3:70904229-70904248 Msa0469160:CDS 50.0%
!! CTGCTGACTCTGAAGAACCA+CGG - chr3_3:70904249-70904268 None:intergenic 50.0%
GAAAAAGTTGCACGCCTCGT+CGG - chr3_3:70904366-70904385 None:intergenic 50.0%
!! CGAGGCGTGCAACTTTTTCT+CGG + chr3_3:70904367-70904386 Msa0469160:CDS 50.0%
AGCAAGCACCAACCCTACAA+TGG + chr3_3:70904393-70904412 Msa0469160:CDS 50.0%
GGACAGTACCATTGTAGGGT+TGG - chr3_3:70904404-70904423 None:intergenic 50.0%
GGTCAGGACAGTACCATTGT+AGG - chr3_3:70904409-70904428 None:intergenic 50.0%
AATGGTACTGTCCTGACCAG+TGG + chr3_3:70904411-70904430 Msa0469160:CDS 50.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 70902896 70904439 70902896 ID=Msa0469160;Name=Msa0469160
chr3_3 mRNA 70902896 70904439 70902896 ID=Msa0469160-mRNA-1;Parent=Msa0469160;Name=Msa0469160-mRNA-1;_AED=0.03;_eAED=0.04;_QI=0|0|0|1|1|1|3|0|301
chr3_3 exon 70902896 70902959 70902896 ID=Msa0469160-mRNA-1:exon:17353;Parent=Msa0469160-mRNA-1
chr3_3 exon 70903113 70903489 70903113 ID=Msa0469160-mRNA-1:exon:17354;Parent=Msa0469160-mRNA-1
chr3_3 exon 70903975 70904439 70903975 ID=Msa0469160-mRNA-1:exon:17355;Parent=Msa0469160-mRNA-1
chr3_3 CDS 70902896 70902959 70902896 ID=Msa0469160-mRNA-1:cds;Parent=Msa0469160-mRNA-1
chr3_3 CDS 70903113 70903489 70903113 ID=Msa0469160-mRNA-1:cds;Parent=Msa0469160-mRNA-1
chr3_3 CDS 70903975 70904439 70903975 ID=Msa0469160-mRNA-1:cds;Parent=Msa0469160-mRNA-1
Gene Sequence

>Msa0469160

ATGAAGAGACCCAACACCTCAGATTCTTCTTCAACTCCTCTCATCACAATCTCTCCATCAACAGAGGAACATAGTCCAAGGAACAAACATGTGTATGGTATGGAGTTTCAATCAATGATGTTGGATGGATTTGAAGAAGAAGGATGTGTTGAAGAAACTGGTCATCATTCTGAGAAGAAACGTAGACTAAGAGTGGATCAAGTTAAGGCTTTGGAGAAAAACTTTGAGGTAGAAAACAAGCTTGAACCTGAAAGGAAAGAGAAGCTTGCCATTGAACTTGGATTGCAGCCTAGACAAGTAGCTGTTTGGTTCCAAAACAGGAGAGCAAGATGGAAGACTAAACAGTTGGAAAGAGATTATGGTGTTCTTAAAGCTAATTATGATGCTCTTAAGCTCAAGTTTGATGCAATTGCTCAAGATAACAAAGCTTTTCACAAGGAGATTAAGGAATTGAAATCAAAGCTTGGAGAAGAAGAAAAAAGCACAATCAATGTTTTGGTGAAGGAGGAGTTAACCATGCTTGAATCTTGTGATGAAGACAAGCATAACCCATCTTCAGAAACATCAATTCCTAGTTCAGAATCCAAAGATCACTTGGATTATGACTGCATAATCAACAACAATGATGTTGGTATTGGTGAAACTTCTTCACTCTTTCCAGTAGACTTGAAAGACGGTTCTTCGGACAGCGACTCCAGCGCAATTTCTTCATCCGTGGTTCTTCAGAGTCAGCAGCACCTTTTGTTGTCTCCTGAATCTTCTTCCATGAATTGTTTCCAGTACCAGAAATCTTATCATGTGAAGATGGAGGAGCACAATTTCTTAAGTGCCGACGAGGCGTGCAACTTTTTCTCGGATGAGCAAGCACCAACCCTACAATGGTACTGTCCTGACCAGTGGAGTTAA

Protein sequence

>Msa0469160

MKRPNTSDSSSTPLITISPSTEEHSPRNKHVYGMEFQSMMLDGFEEEGCVEETGHHSEKKRRLRVDQVKALEKNFEVENKLEPERKEKLAIELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLKFDAIAQDNKAFHKEIKELKSKLGEEEKSTINVLVKEELTMLESCDEDKHNPSSETSIPSSESKDHLDYDCIINNNDVGIGETSSLFPVDLKDGSSDSDSSAISSSVVLQSQQHLLLSPESSSMNCFQYQKSYHVKMEEHNFLSADEACNFFSDEQAPTLQWYCPDQWS*