AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0682900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0682900 MtrunA17_Chr4g0029311 92.593 189 4 2 1 189 1 179 1.74e-123 345
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0682900 AT1G07980.1 49.000 100 50 1 81 180 99 197 2.06e-27 103
Msa0682900 AT1G07980.2 40.541 74 43 1 81 154 99 171 2.06e-14 68.2

Find 54 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCACTTTCTTCCTGTTCTT+TGG 0.144244 4_4:-44938660 None:intergenic
TTCGTTCTTTATCTTCTCTT+TGG 0.213367 4_4:-44938576 None:intergenic
TTCTTCCTGTTCTTTGGAAT+TGG 0.238672 4_4:-44938654 None:intergenic
TGTTTCCTATGAATCGAATT+AGG 0.259220 4_4:+44938738 Msa0682900:CDS
TCCTCGGCTTTCACTTTCTC+AGG 0.351904 4_4:-44941176 None:intergenic
ACAAACTCAAGAGGGAATAA+AGG 0.360672 4_4:+44941212 Msa0682900:CDS
TTTAAAGCTTCCATCTCATA+TGG 0.365236 4_4:+44941380 Msa0682900:three_prime_UTR
CAATTAGCGGAGGATGCTTA+TGG 0.368797 4_4:+44938953 Msa0682900:CDS
TGTTTCTCAGGAAGCAATCT+TGG 0.399959 4_4:+44938793 Msa0682900:CDS
TAGCGATTTGCGTGTTTCTC+AGG 0.418237 4_4:+44938781 Msa0682900:CDS
AAATCTGTCACATTCTGAAA+TGG 0.428197 4_4:+44941288 Msa0682900:three_prime_UTR
AAGAGGGAATAAAGGAGGTT+AGG 0.433079 4_4:+44941220 Msa0682900:CDS
AAACTCAGTGTAAGCTGAAA+GGG 0.437263 4_4:+44938395 Msa0682900:five_prime_UTR
TGCTTATGGTTGTTGTGCTC+AGG 0.449173 4_4:+44938967 Msa0682900:CDS
AAAAGATATGACTTTCTGTC+TGG 0.459425 4_4:+44941026 Msa0682900:CDS
TTCTGCTATGGAGTTGTTTG+AGG 0.460289 4_4:-44938471 None:intergenic
CTTGTAGGTGTTGAGGTTTG+TGG 0.466318 4_4:-44938518 None:intergenic
AAATTCCAATTCCAAAGAAC+AGG 0.466460 4_4:+44938649 Msa0682900:CDS
GTGCAACGGTAAATACACTA+TGG 0.467964 4_4:-44941352 None:intergenic
TAGCTGAAGGTAAATTTCCC+AGG 0.480965 4_4:+44941501 Msa0682900:three_prime_UTR
CGGTGTTTCTGATACAATGA+AGG 0.487431 4_4:-44938362 None:intergenic
TGTCTCTCTTAATGCATCCT+CGG 0.488436 4_4:-44941192 None:intergenic
TCGAATTAGGACGATGTTGA+AGG 0.492300 4_4:+44938751 Msa0682900:CDS
ATCGTCCTAATTCGATTCAT+AGG 0.501138 4_4:-44938743 None:intergenic
GACAGATTTAACAAAAGAAT+AGG 0.507997 4_4:-44941274 None:intergenic
ATGGTTGTTGTGCTCAGGAT+CGG 0.518192 4_4:+44938972 Msa0682900:CDS
TTTGGAATTGGAATTTCCGT+TGG 0.525440 4_4:-44938642 None:intergenic
CATTGTTTCCACCCTGTCGT+TGG 0.535443 4_4:-44941558 None:intergenic
TAAACTCAGTGTAAGCTGAA+AGG 0.541822 4_4:+44938394 Msa0682900:five_prime_UTR
TCCAAAGAACAGGAAGAAAG+TGG 0.544342 4_4:+44938659 Msa0682900:CDS
CACTGAGTTTACTACTCTCA+CGG 0.545080 4_4:-44938382 None:intergenic
AGTTGCTAAATACCAACGAC+AGG 0.545923 4_4:+44941546 Msa0682900:three_prime_UTR
GGAAATGTAAAACAAAATAG+TGG 0.550060 4_4:+44941241 Msa0682900:exon
GAAGTTTCTCGAACAATTAG+CGG 0.558467 4_4:+44938940 Msa0682900:CDS
TTTAACAAAAGAATAGGCTA+AGG 0.561110 4_4:-44941268 None:intergenic
TTGATGCTTGACATTTGTAA+CGG 0.572008 4_4:+44941438 Msa0682900:three_prime_UTR
CGAATTAGGACGATGTTGAA+GGG 0.589179 4_4:+44938752 Msa0682900:CDS
AAATTTCGTGGCATAGCTGA+AGG 0.598046 4_4:+44941488 Msa0682900:three_prime_UTR
TGAAATGGAAACGTGTATGA+TGG 0.599020 4_4:+44941303 Msa0682900:three_prime_UTR
AGCTGAAGGTAAATTTCCCA+GGG 0.606570 4_4:+44941502 Msa0682900:three_prime_UTR
TAAGAGAGACAAACTCAAGA+GGG 0.613384 4_4:+44941204 Msa0682900:CDS
TTATCAAAGTACAATTACAA+TGG 0.614680 4_4:+44938445 Msa0682900:exon
GGTGTTTCTGATACAATGAA+GGG 0.618331 4_4:-44938361 None:intergenic
AAGAAACTCAATTTCACCAA+CGG 0.626812 4_4:+44938626 Msa0682900:CDS
AACTCAAGAGGGAATAAAGG+AGG 0.639462 4_4:+44941215 Msa0682900:CDS
TTAAGAGAGACAAACTCAAG+AGG 0.641585 4_4:+44941203 Msa0682900:CDS
CTTGGCTATTAACAATGCTG+CGG 0.645511 4_4:+44938811 Msa0682900:CDS
GTTTCTCGAACAATTAGCGG+AGG 0.647450 4_4:+44938943 Msa0682900:CDS
AAGAAGAAAGAAACATGCAA+AGG 0.664587 4_4:+44938682 Msa0682900:CDS
AGCTTTAAAGAAGAGTGCAA+CGG 0.672288 4_4:-44941366 None:intergenic
GCTAAATACCAACGACAGGG+TGG 0.680625 4_4:+44941550 Msa0682900:three_prime_UTR
TCCTGAGAAAGTGAAAGCCG+AGG 0.694332 4_4:+44941175 Msa0682900:CDS
GTTGCTAAATACCAACGACA+GGG 0.704192 4_4:+44941547 Msa0682900:three_prime_UTR
GCTGAAGGTAAATTTCCCAG+GGG 0.789466 4_4:+44941503 Msa0682900:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTGTTATGGTTTTTAT+TGG + chr4_4:44938874-44938893 Msa0682900:intron 15.0%
!! AATTAACCAATTATTAAGTT+AGG + chr4_4:44940370-44940389 Msa0682900:intron 15.0%
!! ATTAACCAATTATTAAGTTA+GGG + chr4_4:44940371-44940390 Msa0682900:intron 15.0%
!! TTTATTTACCACTAATTAAA+AGG + chr4_4:44941118-44941137 Msa0682900:intron 15.0%
!! TTATTTACCACTAATTAAAA+GGG + chr4_4:44941119-44941138 Msa0682900:intron 15.0%
!! TTATCAAAGTACAATTACAA+TGG + chr4_4:44938445-44938464 Msa0682900:exon 20.0%
!!! ATTGTTATGTGTTTTTGATT+TGG + chr4_4:44938899-44938918 Msa0682900:intron 20.0%
!! GTTGCGTTTAAATTATTATT+CGG + chr4_4:44939126-44939145 Msa0682900:intron 20.0%
!! TTAGAGAACTTATGAAAATA+AGG + chr4_4:44939354-44939373 Msa0682900:intron 20.0%
!! TATGAAAATAAGGTGAAAAA+AGG + chr4_4:44939364-44939383 Msa0682900:intron 20.0%
!!! TTTAGATTTTGCAATCTATT+AGG + chr4_4:44939544-44939563 Msa0682900:intron 20.0%
!!! CTATTAACTAGATTTGATTT+GGG - chr4_4:44939988-44940007 None:intergenic 20.0%
!! ACTATTAACTAGATTTGATT+TGG - chr4_4:44939989-44940008 None:intergenic 20.0%
!! CATTATCATGAATAAAAAAC+TGG + chr4_4:44940603-44940622 Msa0682900:intron 20.0%
!! ATTAATCTAACCCATTAATT+AGG + chr4_4:44940646-44940665 Msa0682900:intron 20.0%
!!! AACCTTTTTTGTTTTCTTTA+TGG + chr4_4:44940779-44940798 Msa0682900:intron 20.0%
!!! TTTTATCAGTAATTAGGAAA+AGG - chr4_4:44940967-44940986 None:intergenic 20.0%
!! TGGTAAATAAATACATGTAA+AGG - chr4_4:44941109-44941128 None:intergenic 20.0%
! ATGTGTTAATGTCAAATGTT+TGG + chr4_4:44939190-44939209 Msa0682900:intron 25.0%
! TGTGTTAATGTCAAATGTTT+GGG + chr4_4:44939191-44939210 Msa0682900:intron 25.0%
!! CTAATATAACTTGTAAGAAC+AGG - chr4_4:44939338-44939357 None:intergenic 25.0%
! TCTATATTCTTGGAACTTAA+GGG + chr4_4:44939486-44939505 Msa0682900:intron 25.0%
!! TTTTCTTTGTTGGGAAATAT+TGG + chr4_4:44939513-44939532 Msa0682900:intron 25.0%
! TACAAATTAATATGTGACAG+TGG + chr4_4:44939633-44939652 Msa0682900:intron 25.0%
!!! AGTTATTTGTGGTTACTTTT+CGG + chr4_4:44939851-44939870 Msa0682900:intron 25.0%
!! TTTTGTAACATTCTTATGCA+GGG - chr4_4:44940044-44940063 None:intergenic 25.0%
!! ATTTTGTAACATTCTTATGC+AGG - chr4_4:44940045-44940064 None:intergenic 25.0%
! AACTATTCAGAAGTGAATAT+AGG - chr4_4:44940278-44940297 None:intergenic 25.0%
! ATTCATGTGAATCAGAATAT+AGG - chr4_4:44940347-44940366 None:intergenic 25.0%
! TTCAACCCTAACTTAATAAT+TGG - chr4_4:44940379-44940398 None:intergenic 25.0%
! ATTATTAAGTTAGGGTTGAA+TGG + chr4_4:44940379-44940398 Msa0682900:intron 25.0%
! GACCATAAAGAAAACAAAAA+AGG - chr4_4:44940784-44940803 None:intergenic 25.0%
!! TCAAATATTAAGTCTTGTGT+TGG - chr4_4:44940840-44940859 None:intergenic 25.0%
!!! CAGTTGTTTTATCAGTAATT+AGG - chr4_4:44940973-44940992 None:intergenic 25.0%
! GGAAATGTAAAACAAAATAG+TGG + chr4_4:44941241-44941260 Msa0682900:exon 25.0%
! TTTAACAAAAGAATAGGCTA+AGG - chr4_4:44941271-44941290 None:intergenic 25.0%
! GACAGATTTAACAAAAGAAT+AGG - chr4_4:44941277-44941296 None:intergenic 25.0%
!!! AGATTTTTTTTTTCTTGCTG+TGG + chr4_4:44941405-44941424 Msa0682900:three_prime_UTR 25.0%
!! TTTTTATGCTGAAAATTTCG+TGG + chr4_4:44941476-44941495 Msa0682900:three_prime_UTR 25.0%
! TCTTTCTTGATTTTGCTTGT+AGG - chr4_4:44938536-44938555 None:intergenic 30.0%
TTCGTTCTTTATCTTCTCTT+TGG - chr4_4:44938579-44938598 None:intergenic 30.0%
AAGAAACTCAATTTCACCAA+CGG + chr4_4:44938626-44938645 Msa0682900:CDS 30.0%
AAATTCCAATTCCAAAGAAC+AGG + chr4_4:44938649-44938668 Msa0682900:CDS 30.0%
AAGAAGAAAGAAACATGCAA+AGG + chr4_4:44938682-44938701 Msa0682900:CDS 30.0%
TGTTTCCTATGAATCGAATT+AGG + chr4_4:44938738-44938757 Msa0682900:CDS 30.0%
!!! ATTTGGTGTTTGTGTTTTGT+AGG + chr4_4:44938916-44938935 Msa0682900:intron 30.0%
TAATTTAAACGCAACCACAT+CGG - chr4_4:44939121-44939140 None:intergenic 30.0%
!! ATAAGCTAGTTCTATAGCAA+AGG + chr4_4:44939275-44939294 Msa0682900:intron 30.0%
TTTCATAAGTTCTCCCAAAT+AGG + chr4_4:44939410-44939429 Msa0682900:intron 30.0%
!! TAAGTTTTGTGAGCCTATTT+GGG - chr4_4:44939426-44939445 None:intergenic 30.0%
!! ATAAGTTTTGTGAGCCTATT+TGG - chr4_4:44939427-44939446 None:intergenic 30.0%
GTCTATATTCTTGGAACTTA+AGG + chr4_4:44939485-44939504 Msa0682900:intron 30.0%
! TTTGTTGGGAAATATTGGTT+TGG + chr4_4:44939518-44939537 Msa0682900:intron 30.0%
GGTCAAAAACAATAAACAGA+CGG - chr4_4:44939693-44939712 None:intergenic 30.0%
GTAGAAGTCTTAGTTATTTG+TGG + chr4_4:44939840-44939859 Msa0682900:intron 30.0%
!!! GTTATTTGTGGTTACTTTTC+GGG + chr4_4:44939852-44939871 Msa0682900:intron 30.0%
!!! TTATTTGTGGTTACTTTTCG+GGG + chr4_4:44939853-44939872 Msa0682900:intron 30.0%
!!! ATATCATACTGGTTTTGTTC+TGG + chr4_4:44939933-44939952 Msa0682900:intron 30.0%
ACTGATAGGCTTAATATGAT+TGG - chr4_4:44940076-44940095 None:intergenic 30.0%
ATATTAAGCCTATCAGTTCA+TGG + chr4_4:44940079-44940098 Msa0682900:intron 30.0%
TATTAAGCCTATCAGTTCAT+GGG + chr4_4:44940080-44940099 Msa0682900:intron 30.0%
CGATTCAGTTCATATCATAT+AGG + chr4_4:44940163-44940182 Msa0682900:intron 30.0%
TCAGAAGTGAATATAGGAAA+CGG - chr4_4:44940272-44940291 None:intergenic 30.0%
GGTGATATTTATAAGTGGAT+GGG - chr4_4:44940306-44940325 None:intergenic 30.0%
TGGTGATATTTATAAGTGGA+TGG - chr4_4:44940307-44940326 None:intergenic 30.0%
GTAGTGGTGATATTTATAAG+TGG - chr4_4:44940311-44940330 None:intergenic 30.0%
!! AGGTTTCTAGAATAAAGTAG+TGG - chr4_4:44940327-44940346 None:intergenic 30.0%
GATAGAGATTTCCTTCAATA+TGG - chr4_4:44940584-44940603 None:intergenic 30.0%
ATTTGACCTATGCTATAAGT+AGG + chr4_4:44940854-44940873 Msa0682900:intron 30.0%
TTACAACCTACTTATAGCAT+AGG - chr4_4:44940863-44940882 None:intergenic 30.0%
CACATAAATAAACATGCACA+AGG - chr4_4:44940927-44940946 None:intergenic 30.0%
AAAAGATATGACTTTCTGTC+TGG + chr4_4:44941026-44941045 Msa0682900:CDS 30.0%
CACTAGATTAAGTTTCAACA+GGG - chr4_4:44941063-44941082 None:intergenic 30.0%
TCACTAGATTAAGTTTCAAC+AGG - chr4_4:44941064-44941083 None:intergenic 30.0%
! AAATCTGTCACATTCTGAAA+TGG + chr4_4:44941288-44941307 Msa0682900:three_prime_UTR 30.0%
! TTTAAAGCTTCCATCTCATA+TGG + chr4_4:44941380-44941399 Msa0682900:three_prime_UTR 30.0%
AAAAATCTAGCCATATGAGA+TGG - chr4_4:44941393-44941412 None:intergenic 30.0%
TTGATGCTTGACATTTGTAA+CGG + chr4_4:44941438-44941457 Msa0682900:three_prime_UTR 30.0%
! GGTGTTTCTGATACAATGAA+GGG - chr4_4:44938364-44938383 None:intergenic 35.0%
TAAACTCAGTGTAAGCTGAA+AGG + chr4_4:44938394-44938413 Msa0682900:five_prime_UTR 35.0%
AAACTCAGTGTAAGCTGAAA+GGG + chr4_4:44938395-44938414 Msa0682900:five_prime_UTR 35.0%
!!! CTTCTTGTTGTTTTCTGCTA+TGG - chr4_4:44938486-44938505 None:intergenic 35.0%
! TTTGGAATTGGAATTTCCGT+TGG - chr4_4:44938645-44938664 None:intergenic 35.0%
!! TTCTTCCTGTTCTTTGGAAT+TGG - chr4_4:44938657-44938676 None:intergenic 35.0%
ATCGTCCTAATTCGATTCAT+AGG - chr4_4:44938746-44938765 None:intergenic 35.0%
GAAGTTTCTCGAACAATTAG+CGG + chr4_4:44938940-44938959 Msa0682900:CDS 35.0%
AGCTGTTACATTTGTACTTG+CGG + chr4_4:44939058-44939077 Msa0682900:intron 35.0%
AACCACTTCTAGTAGCTTAT+CGG + chr4_4:44939162-44939181 Msa0682900:intron 35.0%
ATATAGACGCTTGTTTGGAT+TGG - chr4_4:44939473-44939492 None:intergenic 35.0%
CAAGAATATAGACGCTTGTT+TGG - chr4_4:44939478-44939497 None:intergenic 35.0%
CAAACAAGCGTCTATATTCT+TGG + chr4_4:44939476-44939495 Msa0682900:intron 35.0%
! TAAGGGATGCTTTTCTTTGT+TGG + chr4_4:44939503-44939522 Msa0682900:intron 35.0%
! AAGGGATGCTTTTCTTTGTT+GGG + chr4_4:44939504-44939523 Msa0682900:intron 35.0%
!! TTACTTTTCGGGGAGAATAA+CGG + chr4_4:44939863-44939882 Msa0682900:intron 35.0%
! TTGAAAGAGCTTTTGCCTTT+AGG + chr4_4:44939903-44939922 Msa0682900:intron 35.0%
! TGAAAGAGCTTTTGCCTTTA+GGG + chr4_4:44939904-44939923 Msa0682900:intron 35.0%
TATGATATTCCCTACCCTAA+AGG - chr4_4:44939921-44939940 None:intergenic 35.0%
ATTAAGCCTATCAGTTCATG+GGG + chr4_4:44940081-44940100 Msa0682900:intron 35.0%
TATAGGAAACGGTTCAAGAA+GGG - chr4_4:44940261-44940280 None:intergenic 35.0%
ATATAGGAAACGGTTCAAGA+AGG - chr4_4:44940262-44940281 None:intergenic 35.0%
ACTTCCAGTGCCTAATTAAT+GGG - chr4_4:44940659-44940678 None:intergenic 35.0%
AACTTCCAGTGCCTAATTAA+TGG - chr4_4:44940660-44940679 None:intergenic 35.0%
TATCAATAAGAGCAAAAGCG+AGG + chr4_4:44940731-44940750 Msa0682900:intron 35.0%
! TTTTCTTTATGGTCTGCACT+TGG + chr4_4:44940790-44940809 Msa0682900:intron 35.0%
!! CTGTTACTTTGTATGTCCAT+TGG + chr4_4:44940888-44940907 Msa0682900:intron 35.0%
CTTTGTATGTCCATTGGAAT+TGG + chr4_4:44940894-44940913 Msa0682900:intron 35.0%
AGGATCAATTCCAATTCCAA+TGG - chr4_4:44940907-44940926 None:intergenic 35.0%
!! GCAGAAACCCTTTTAATTAG+TGG - chr4_4:44941129-44941148 None:intergenic 35.0%
ACTTTCTCAGGAACAAAATC+TGG - chr4_4:44941167-44941186 None:intergenic 35.0%
TTAAGAGAGACAAACTCAAG+AGG + chr4_4:44941203-44941222 Msa0682900:CDS 35.0%
TAAGAGAGACAAACTCAAGA+GGG + chr4_4:44941204-44941223 Msa0682900:CDS 35.0%
ACAAACTCAAGAGGGAATAA+AGG + chr4_4:44941212-44941231 Msa0682900:CDS 35.0%
TGAAATGGAAACGTGTATGA+TGG + chr4_4:44941303-44941322 Msa0682900:three_prime_UTR 35.0%
!! AGCTTTAAAGAAGAGTGCAA+CGG - chr4_4:44941369-44941388 None:intergenic 35.0%
! TATGTTTTCTATCTTCCCCT+GGG - chr4_4:44941521-44941540 None:intergenic 35.0%
! ATATGTTTTCTATCTTCCCC+TGG - chr4_4:44941522-44941541 None:intergenic 35.0%
! CGGTGTTTCTGATACAATGA+AGG - chr4_4:44938365-44938384 None:intergenic 40.0%
CACTGAGTTTACTACTCTCA+CGG - chr4_4:44938385-44938404 None:intergenic 40.0%
TTCTGCTATGGAGTTGTTTG+AGG - chr4_4:44938474-44938493 None:intergenic 40.0%
! TGTTGAGGTTTGTGGCTTTT+TGG - chr4_4:44938513-44938532 None:intergenic 40.0%
!! GATTTTGCTTGTAGGTGTTG+AGG - chr4_4:44938528-44938547 None:intergenic 40.0%
TCCAAAGAACAGGAAGAAAG+TGG + chr4_4:44938659-44938678 Msa0682900:CDS 40.0%
TCCACTTTCTTCCTGTTCTT+TGG - chr4_4:44938663-44938682 None:intergenic 40.0%
TCGAATTAGGACGATGTTGA+AGG + chr4_4:44938751-44938770 Msa0682900:CDS 40.0%
CGAATTAGGACGATGTTGAA+GGG + chr4_4:44938752-44938771 Msa0682900:CDS 40.0%
TGTTTCTCAGGAAGCAATCT+TGG + chr4_4:44938793-44938812 Msa0682900:CDS 40.0%
CTTGGCTATTAACAATGCTG+CGG + chr4_4:44938811-44938830 Msa0682900:CDS 40.0%
!! GTCAAATGTTTGGGCTAGTT+TGG + chr4_4:44939200-44939219 Msa0682900:intron 40.0%
! ACCATTTGCTACCTTGTGAT+TGG + chr4_4:44939710-44939729 Msa0682900:intron 40.0%
ACCAATCACAAGGTAGCAAA+TGG - chr4_4:44939714-44939733 None:intergenic 40.0%
GCACGAAAACACAACAAAAC+TGG - chr4_4:44939743-44939762 None:intergenic 40.0%
TAGGGTAGGGAATATCATAC+TGG + chr4_4:44939922-44939941 Msa0682900:intron 40.0%
GGTTGAATGGTTCAGAGATA+TGG + chr4_4:44940392-44940411 Msa0682900:intron 40.0%
TCAGTGCTGTACACTAGAAA+AGG + chr4_4:44940434-44940453 Msa0682900:intron 40.0%
CAGTGCTGTACACTAGAAAA+GGG + chr4_4:44940435-44940454 Msa0682900:intron 40.0%
ATATGGCACAGGAAAAGAGA+AGG - chr4_4:44940567-44940586 None:intergenic 40.0%
! CTTTTCCTGTGCCATATTGA+AGG + chr4_4:44940570-44940589 Msa0682900:intron 40.0%
GATTTCCTTCAATATGGCAC+AGG - chr4_4:44940578-44940597 None:intergenic 40.0%
CTAACCCATTAATTAGGCAC+TGG + chr4_4:44940652-44940671 Msa0682900:intron 40.0%
AATAAGAGCAAAAGCGAGGA+GGG + chr4_4:44940735-44940754 Msa0682900:intron 40.0%
TGTCTCTCTTAATGCATCCT+CGG - chr4_4:44941195-44941214 None:intergenic 40.0%
AACTCAAGAGGGAATAAAGG+AGG + chr4_4:44941215-44941234 Msa0682900:CDS 40.0%
AAGAGGGAATAAAGGAGGTT+AGG + chr4_4:44941220-44941239 Msa0682900:CDS 40.0%
GTGCAACGGTAAATACACTA+TGG - chr4_4:44941355-44941374 None:intergenic 40.0%
AAATTTCGTGGCATAGCTGA+AGG + chr4_4:44941488-44941507 Msa0682900:three_prime_UTR 40.0%
TAGCTGAAGGTAAATTTCCC+AGG + chr4_4:44941501-44941520 Msa0682900:three_prime_UTR 40.0%
AGCTGAAGGTAAATTTCCCA+GGG + chr4_4:44941502-44941521 Msa0682900:three_prime_UTR 40.0%
AGTTGCTAAATACCAACGAC+AGG + chr4_4:44941546-44941565 Msa0682900:three_prime_UTR 40.0%
GTTGCTAAATACCAACGACA+GGG + chr4_4:44941547-44941566 Msa0682900:three_prime_UTR 40.0%
!! CTTGTAGGTGTTGAGGTTTG+TGG - chr4_4:44938521-44938540 None:intergenic 45.0%
TAGCGATTTGCGTGTTTCTC+AGG + chr4_4:44938781-44938800 Msa0682900:CDS 45.0%
GTTTCTCGAACAATTAGCGG+AGG + chr4_4:44938943-44938962 Msa0682900:CDS 45.0%
CAATTAGCGGAGGATGCTTA+TGG + chr4_4:44938953-44938972 Msa0682900:CDS 45.0%
TGCTTATGGTTGTTGTGCTC+AGG + chr4_4:44938967-44938986 Msa0682900:CDS 45.0%
ATGGTTGTTGTGCTCAGGAT+CGG + chr4_4:44938972-44938991 Msa0682900:CDS 45.0%
TGCGGCTTGTGTTTAGTGTT+TGG + chr4_4:44939076-44939095 Msa0682900:intron 45.0%
CACCGATAAGCTACTAGAAG+TGG - chr4_4:44939167-44939186 None:intergenic 45.0%
CTGGTAAACGACCAATCACA+AGG - chr4_4:44939724-44939743 None:intergenic 45.0%
!! TTTCGGGGAGAATAACGGAT+AGG + chr4_4:44939868-44939887 Msa0682900:intron 45.0%
!!! AGAGCTTTTGCCTTTAGGGT+AGG + chr4_4:44939908-44939927 Msa0682900:intron 45.0%
!!! GAGCTTTTGCCTTTAGGGTA+GGG + chr4_4:44939909-44939928 Msa0682900:intron 45.0%
CTAAGTCCCCATGAACTGAT+AGG - chr4_4:44940090-44940109 None:intergenic 45.0%
TCAGTTCATGGGGACTTAGA+AGG + chr4_4:44940091-44940110 Msa0682900:intron 45.0%
GGCATGGATGATAAGACACA+AGG + chr4_4:44940112-44940131 Msa0682900:intron 45.0%
TCCATGTGATGTGAAGTGTG+AGG + chr4_4:44940211-44940230 Msa0682900:intron 45.0%
TCCTCACACTTCACATCACA+TGG - chr4_4:44940215-44940234 None:intergenic 45.0%
! GGTTCAAGAAGGGAGGTATA+TGG - chr4_4:44940251-44940270 None:intergenic 45.0%
CAATAAGAGCAAAAGCGAGG+AGG + chr4_4:44940734-44940753 Msa0682900:intron 45.0%
GCTGAAGGTAAATTTCCCAG+GGG + chr4_4:44941503-44941522 Msa0682900:three_prime_UTR 45.0%
!!! TTTTTTTTTTTTTATTGTTA+TGG + chr4_4:44938864-44938883 Msa0682900:intron 5.0%
AAACGCAACCACATCGGTGT+TGG - chr4_4:44939115-44939134 None:intergenic 50.0%
!! GGGGAGAATAACGGATAGGT+AGG + chr4_4:44939872-44939891 Msa0682900:intron 50.0%
TCATGGGGACTTAGAAGGCA+TGG + chr4_4:44940096-44940115 Msa0682900:intron 50.0%
AGGAAACGGTTCAAGAAGGG+AGG - chr4_4:44940258-44940277 None:intergenic 50.0%
TCCTGAGAAAGTGAAAGCCG+AGG + chr4_4:44941175-44941194 Msa0682900:CDS 50.0%
TCCTCGGCTTTCACTTTCTC+AGG - chr4_4:44941179-44941198 None:intergenic 50.0%
GTCAGTGTCCAACACCGATG+TGG + chr4_4:44939104-44939123 Msa0682900:intron 55.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 44938359 44941572 44938359 ID=Msa0682900;Name=Msa0682900
chr4_4 mRNA 44938359 44941572 44938359 ID=Msa0682900-mRNA-1;Parent=Msa0682900;Name=Msa0682900-mRNA-1;_AED=0.09;_eAED=0.09;_QI=105|1|1|1|1|1|4|331|189
chr4_4 exon 44938359 44938832 44938359 ID=Msa0682900-mRNA-1:exon:10867;Parent=Msa0682900-mRNA-1
chr4_4 exon 44938938 44939022 44938938 ID=Msa0682900-mRNA-1:exon:10868;Parent=Msa0682900-mRNA-1
chr4_4 exon 44941006 44941047 44941006 ID=Msa0682900-mRNA-1:exon:10869;Parent=Msa0682900-mRNA-1
chr4_4 exon 44941168 44941572 44941168 ID=Msa0682900-mRNA-1:exon:10870;Parent=Msa0682900-mRNA-1
chr4_4 five_prime_UTR 44938359 44938463 44938359 ID=Msa0682900-mRNA-1:five_prime_utr;Parent=Msa0682900-mRNA-1
chr4_4 CDS 44938464 44938832 44938464 ID=Msa0682900-mRNA-1:cds;Parent=Msa0682900-mRNA-1
chr4_4 CDS 44938938 44939022 44938938 ID=Msa0682900-mRNA-1:cds;Parent=Msa0682900-mRNA-1
chr4_4 CDS 44941006 44941047 44941006 ID=Msa0682900-mRNA-1:cds;Parent=Msa0682900-mRNA-1
chr4_4 CDS 44941168 44941241 44941168 ID=Msa0682900-mRNA-1:cds;Parent=Msa0682900-mRNA-1
chr4_4 three_prime_UTR 44941242 44941572 44941242 ID=Msa0682900-mRNA-1:three_prime_utr;Parent=Msa0682900-mRNA-1
Gene Sequence

>Msa0682900

ATGGCTTCCTCAAACAACTCCATAGCAGAAAACAACAAGAAGAAATCCAAAAAGCCACAAACCTCAACACCTACAAGCAAAATCAAGAAAGACAACAAAAGCATTGAAAAATCCAAAGAGAAGATAAAGAACGAAGAGAACAAGAACAACAACAAGAATAAGAAGAAACTCAATTTCACCAACGGAAATTCCAATTCCAAAGAACAGGAAGAAAGTGGAAGAAGAAAGAAACATGCAAAGGACGATGACGAAGAAGAAGATGCGAAAACGCATGTGTTTCCTATGAATCGAATTAGGACGATGTTGAAGGGTGAAATTAGCGATTTGCGTGTTTCTCAGGAAGCAATCTTGGCTATTAACAATGCTGCGGAGAAGTTTCTCGAACAATTAGCGGAGGATGCTTATGGTTGTTGTGCTCAGGATCGGAAGAAGTCTTTGAGCTACAATCATCTATCACGTGTTGTTAGTAAGCAAAAAAGATATGACTTTCTGTCTGATTTTGTTCCTGAGAAAGTGAAAGCCGAGGATGCATTAAGAGAGACAAACTCAAGAGGGAATAAAGGAGGTTAG

Protein sequence

>Msa0682900

MASSNNSIAENNKKKSKKPQTSTPTSKIKKDNKSIEKSKEKIKNEENKNNNKNKKKLNFTNGNSNSKEQEESGRRKKHAKDDDEEEDAKTHVFPMNRIRTMLKGEISDLRVSQEAILAINNAAEKFLEQLAEDAYGCCAQDRKKSLSYNHLSRVVSKQKRYDFLSDFVPEKVKAEDALRETNSRGNKGG*