Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1359280 | KAF3587895.1 | 48.780 | 82 | 40 | 1 | 54 | 133 | 14 | 95 | 2.09e-15 | 82.8 |
| Msa1359280 | KAF3587895.1 | 59.649 | 114 | 41 | 2 | 20 | 133 | 28 | 136 | 5.76e-37 | 141 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1359280 | sp|O81009|SCP12_ARATH | 45.614 | 114 | 16 | 1 | 20 | 133 | 22 | 89 | 1.72e-24 | 100 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1359280 | A0A4D6KJW8 | 65.068 | 146 | 21 | 3 | 17 | 134 | 33 | 176 | 8.12e-50 | 176 |
| Msa1359280 | A0A4D6KJW8 | 72.857 | 70 | 17 | 1 | 9 | 78 | 97 | 164 | 5.65e-24 | 106 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012440 | Msa1359280 | 0.817503 | 3.188565e-52 | -8.615850e-47 |
| Msa0057240 | Msa1359280 | 0.813246 | 2.821049e-51 | -8.615850e-47 |
| Msa1359280 | Msa1379070 | 0.800716 | 1.264688e-48 | -8.615850e-47 |
| Msa1359280 | Msa1429420 | 0.813176 | 2.921538e-51 | -8.615850e-47 |
| Msa0672520 | Msa1359280 | 0.805827 | 1.106349e-49 | -8.615850e-47 |
| Msa0680750 | Msa1359280 | 0.810651 | 1.036682e-50 | -8.615850e-47 |
| Msa0706370 | Msa1359280 | 0.805677 | 1.189324e-49 | -8.615850e-47 |
| Msa0141670 | Msa1359280 | 0.800384 | 1.478423e-48 | -8.615850e-47 |
| Msa0149560 | Msa1359280 | 0.816855 | 4.459100e-52 | -8.615850e-47 |
| Msa0227510 | Msa1359280 | 0.803902 | 2.793332e-49 | -8.615850e-47 |
| Msa1295010 | Msa1359280 | 0.800969 | 1.123285e-48 | -8.615850e-47 |
| Msa1337340 | Msa1359280 | 0.805162 | 1.524799e-49 | -8.615850e-47 |
| Msa0413930 | Msa1359280 | 0.817493 | 3.204066e-52 | -8.615850e-47 |
| Msa0458950 | Msa1359280 | 0.817376 | 3.404496e-52 | -8.615850e-47 |
| Msa1069300 | Msa1359280 | 0.812727 | 3.666115e-51 | -8.615850e-47 |
| Msa0315480 | Msa1359280 | 0.804519 | 2.078263e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1359280 | MtrunA17_Chr2g0285371 | 55.645 | 124 | 9 | 2 | 11 | 134 | 22 | 99 | 9.13e-35 | 125 |
| Msa1359280 | MtrunA17_Chr2g0285351 | 56.154 | 130 | 11 | 2 | 5 | 134 | 15 | 98 | 1.36e-34 | 124 |
| Msa1359280 | MtrunA17_Chr2g0285381 | 81.159 | 69 | 11 | 1 | 10 | 78 | 24 | 90 | 2.47e-33 | 121 |
| Msa1359280 | MtrunA17_Chr4g0009641 | 62.667 | 75 | 23 | 2 | 4 | 78 | 25 | 94 | 1.67e-22 | 91.3 |
| Msa1359280 | MtrunA17_Chr3g0133011 | 70.000 | 60 | 16 | 1 | 21 | 78 | 52 | 111 | 2.08e-22 | 91.3 |
| Msa1359280 | MtrunA17_Chr4g0009701 | 72.881 | 59 | 15 | 1 | 20 | 78 | 37 | 94 | 2.22e-22 | 91.3 |
| Msa1359280 | MtrunA17_Chr4g0009681 | 71.186 | 59 | 16 | 1 | 20 | 78 | 34 | 91 | 4.22e-22 | 90.5 |
| Msa1359280 | MtrunA17_Chr4g0009721 | 60.294 | 68 | 26 | 1 | 11 | 78 | 24 | 90 | 3.05e-21 | 87.8 |
| Msa1359280 | MtrunA17_Chr4g0009711 | 68.966 | 58 | 17 | 1 | 21 | 78 | 38 | 94 | 4.50e-21 | 87.4 |
| Msa1359280 | MtrunA17_Chr4g0009661 | 67.797 | 59 | 18 | 1 | 20 | 78 | 37 | 94 | 7.80e-21 | 86.7 |
| Msa1359280 | MtrunA17_Chr4g0009651 | 67.797 | 59 | 18 | 1 | 20 | 78 | 37 | 94 | 2.28e-20 | 85.5 |
| Msa1359280 | MtrunA17_Chr3g0093971 | 40.351 | 114 | 22 | 1 | 20 | 133 | 24 | 91 | 5.34e-18 | 79.0 |
| Msa1359280 | MtrunA17_Chr4g0009671 | 72.000 | 50 | 13 | 1 | 29 | 78 | 11 | 59 | 5.78e-18 | 78.6 |
| Msa1359280 | MtrunA17_Chr4g0009671 | 59.322 | 59 | 23 | 1 | 77 | 134 | 13 | 71 | 4.19e-17 | 76.3 |
| Msa1359280 | MtrunA17_Chr3g0131731 | 49.153 | 59 | 28 | 1 | 71 | 127 | 31 | 89 | 6.73e-12 | 61.2 |
| Msa1359280 | MtrunA17_Chr7g0234041 | 41.463 | 82 | 42 | 2 | 1 | 78 | 1 | 80 | 8.84e-12 | 61.2 |
| Msa1359280 | MtrunA17_Chr7g0234041 | 51.064 | 47 | 23 | 0 | 87 | 133 | 45 | 91 | 2.42e-11 | 59.7 |
| Msa1359280 | MtrunA17_Chr7g0249431 | 59.459 | 37 | 15 | 0 | 97 | 133 | 58 | 94 | 1.38e-11 | 60.5 |
| Msa1359280 | MtrunA17_Chr7g0249431 | 37.179 | 78 | 48 | 1 | 1 | 78 | 7 | 83 | 2.47e-11 | 59.7 |
| Msa1359280 | MtrunA17_Chr5g0431301 | 38.158 | 76 | 45 | 2 | 55 | 129 | 15 | 89 | 1.46e-11 | 60.5 |
| Msa1359280 | MtrunA17_Chr8g0338461 | 51.064 | 47 | 23 | 0 | 87 | 133 | 49 | 95 | 1.84e-11 | 60.1 |
| Msa1359280 | MtrunA17_Chr3g0126051 | 38.462 | 78 | 42 | 3 | 57 | 129 | 17 | 93 | 4.41e-11 | 58.9 |
| Msa1359280 | MtrunA17_Chr3g0118851 | 47.458 | 59 | 29 | 1 | 71 | 127 | 78 | 136 | 5.61e-11 | 58.9 |
| Msa1359280 | MtrunA17_Chr7g0234051 | 36.905 | 84 | 50 | 2 | 52 | 133 | 12 | 94 | 8.83e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1359280 | AT2G22920.4 | 45.614 | 114 | 16 | 1 | 20 | 133 | 22 | 89 | 9.30e-26 | 99.0 |
| Msa1359280 | AT2G22920.2 | 45.614 | 114 | 16 | 1 | 20 | 133 | 22 | 89 | 1.75e-25 | 100 |
| Msa1359280 | AT2G22920.1 | 45.614 | 114 | 16 | 1 | 20 | 133 | 22 | 89 | 2.03e-25 | 99.4 |
| Msa1359280 | AT1G73300.1 | 46.491 | 114 | 15 | 1 | 20 | 133 | 30 | 97 | 2.08e-25 | 99.8 |
| Msa1359280 | AT1G73300.2 | 46.491 | 114 | 15 | 1 | 20 | 133 | 30 | 97 | 2.08e-25 | 99.8 |
| Msa1359280 | AT2G22980.3 | 43.590 | 117 | 20 | 1 | 17 | 133 | 20 | 90 | 4.55e-25 | 97.8 |
| Msa1359280 | AT1G73310.2 | 46.491 | 114 | 15 | 1 | 20 | 133 | 30 | 97 | 4.80e-25 | 98.6 |
| Msa1359280 | AT1G73310.1 | 46.491 | 114 | 15 | 1 | 20 | 133 | 30 | 97 | 5.10e-25 | 98.6 |
| Msa1359280 | AT2G23010.2 | 59.259 | 81 | 24 | 3 | 1 | 78 | 4 | 78 | 5.55e-25 | 98.6 |
| Msa1359280 | AT2G23010.2 | 49.333 | 75 | 36 | 1 | 61 | 133 | 15 | 89 | 8.78e-21 | 87.0 |
| Msa1359280 | AT2G22980.2 | 43.590 | 117 | 20 | 1 | 17 | 133 | 20 | 90 | 5.94e-25 | 98.2 |
| Msa1359280 | AT2G22990.3 | 72.881 | 59 | 14 | 1 | 20 | 78 | 20 | 76 | 6.31e-25 | 98.6 |
| Msa1359280 | AT2G22990.3 | 57.895 | 57 | 24 | 0 | 77 | 133 | 31 | 87 | 8.74e-20 | 84.3 |
| Msa1359280 | AT2G22980.1 | 43.590 | 117 | 20 | 1 | 17 | 133 | 20 | 90 | 7.68e-25 | 98.2 |
| Msa1359280 | AT2G22990.4 | 72.881 | 59 | 14 | 1 | 20 | 78 | 20 | 76 | 8.22e-25 | 97.8 |
| Msa1359280 | AT2G22990.4 | 57.895 | 57 | 24 | 0 | 77 | 133 | 31 | 87 | 1.15e-19 | 83.6 |
| Msa1359280 | AT2G22980.4 | 43.590 | 117 | 20 | 1 | 17 | 133 | 20 | 90 | 9.12e-25 | 97.8 |
| Msa1359280 | AT2G22970.2 | 43.860 | 114 | 18 | 1 | 20 | 133 | 22 | 89 | 9.56e-25 | 96.7 |
| Msa1359280 | AT2G22970.4 | 43.860 | 114 | 18 | 1 | 20 | 133 | 22 | 89 | 1.44e-24 | 97.4 |
| Msa1359280 | AT2G22970.3 | 43.860 | 114 | 18 | 1 | 20 | 133 | 22 | 89 | 1.73e-24 | 97.4 |
| Msa1359280 | AT1G73280.2 | 41.985 | 131 | 27 | 2 | 6 | 133 | 13 | 97 | 2.19e-24 | 96.3 |
| Msa1359280 | AT2G22970.1 | 43.860 | 114 | 18 | 1 | 20 | 133 | 22 | 89 | 2.28e-24 | 97.1 |
| Msa1359280 | AT2G23010.1 | 40.602 | 133 | 32 | 2 | 1 | 133 | 4 | 89 | 2.78e-24 | 96.7 |
| Msa1359280 | AT1G73270.2 | 45.614 | 114 | 16 | 1 | 20 | 133 | 30 | 97 | 3.77e-24 | 96.3 |
| Msa1359280 | AT1G73270.1 | 45.614 | 114 | 16 | 1 | 20 | 133 | 30 | 97 | 3.93e-24 | 96.3 |
| Msa1359280 | AT1G73280.1 | 41.985 | 131 | 27 | 2 | 6 | 133 | 13 | 97 | 4.00e-24 | 96.3 |
| Msa1359280 | AT1G73290.2 | 43.860 | 114 | 18 | 1 | 20 | 133 | 29 | 96 | 5.95e-24 | 94.4 |
| Msa1359280 | AT5G36180.1 | 46.491 | 114 | 15 | 1 | 20 | 133 | 30 | 97 | 7.53e-24 | 95.5 |
| Msa1359280 | AT1G73290.3 | 43.860 | 114 | 18 | 1 | 20 | 133 | 29 | 96 | 1.72e-23 | 94.4 |
| Msa1359280 | AT1G73290.1 | 43.860 | 114 | 18 | 1 | 20 | 133 | 29 | 96 | 1.98e-23 | 94.4 |
| Msa1359280 | AT2G22990.5 | 66.154 | 65 | 20 | 1 | 14 | 78 | 14 | 76 | 5.55e-23 | 92.8 |
| Msa1359280 | AT2G22990.1 | 66.154 | 65 | 20 | 1 | 14 | 78 | 14 | 76 | 6.21e-23 | 92.8 |
| Msa1359280 | AT3G10450.4 | 43.860 | 114 | 18 | 1 | 20 | 133 | 26 | 93 | 7.97e-23 | 92.4 |
| Msa1359280 | AT3G12203.1 | 56.962 | 79 | 29 | 2 | 1 | 79 | 11 | 84 | 9.09e-23 | 92.4 |
| Msa1359280 | AT3G12240.1 | 67.742 | 62 | 18 | 1 | 17 | 78 | 22 | 81 | 1.22e-22 | 92.0 |
| Msa1359280 | AT3G10450.1 | 43.860 | 114 | 18 | 1 | 20 | 133 | 26 | 93 | 1.25e-22 | 92.0 |
| Msa1359280 | AT2G23000.1 | 64.062 | 64 | 21 | 1 | 15 | 78 | 17 | 78 | 1.81e-22 | 91.7 |
| Msa1359280 | AT2G23000.2 | 64.062 | 64 | 21 | 1 | 15 | 78 | 17 | 78 | 1.81e-22 | 91.7 |
| Msa1359280 | AT3G12203.3 | 67.213 | 61 | 18 | 1 | 19 | 79 | 5 | 63 | 2.74e-22 | 90.9 |
| Msa1359280 | AT1G33540.1 | 60.274 | 73 | 27 | 1 | 19 | 91 | 25 | 95 | 3.38e-22 | 90.9 |
| Msa1359280 | AT3G12220.3 | 39.496 | 119 | 26 | 1 | 15 | 133 | 19 | 91 | 1.15e-21 | 89.0 |
| Msa1359280 | AT3G12220.1 | 39.496 | 119 | 26 | 1 | 15 | 133 | 19 | 91 | 2.26e-21 | 88.6 |
| Msa1359280 | AT3G12230.1 | 64.062 | 64 | 21 | 2 | 15 | 78 | 19 | 80 | 1.52e-20 | 86.3 |
| Msa1359280 | AT3G10450.3 | 69.388 | 49 | 15 | 0 | 85 | 133 | 2 | 50 | 1.20e-19 | 83.6 |
| Msa1359280 | AT3G10450.3 | 71.429 | 35 | 10 | 0 | 44 | 78 | 5 | 39 | 2.94e-11 | 59.7 |
| Msa1359280 | AT3G10450.2 | 69.388 | 49 | 15 | 0 | 85 | 133 | 2 | 50 | 1.61e-19 | 83.2 |
| Msa1359280 | AT3G10450.2 | 71.429 | 35 | 10 | 0 | 44 | 78 | 5 | 39 | 3.28e-11 | 59.7 |
| Msa1359280 | AT5G09640.1 | 35.338 | 133 | 38 | 2 | 2 | 132 | 4 | 90 | 2.28e-19 | 83.2 |
| Msa1359280 | AT1G33540.2 | 70.000 | 50 | 15 | 0 | 85 | 134 | 2 | 51 | 1.62e-18 | 80.5 |
| Msa1359280 | AT1G33540.2 | 60.417 | 48 | 19 | 0 | 44 | 91 | 5 | 52 | 3.41e-12 | 62.8 |
| Msa1359280 | AT3G12220.2 | 65.957 | 47 | 16 | 0 | 87 | 133 | 15 | 61 | 8.71e-17 | 75.5 |
| Msa1359280 | AT4G12910.2 | 42.308 | 78 | 42 | 2 | 58 | 133 | 23 | 99 | 6.45e-13 | 64.7 |
| Msa1359280 | AT4G12910.1 | 42.308 | 78 | 42 | 2 | 58 | 133 | 23 | 99 | 6.64e-13 | 64.7 |
| Msa1359280 | AT3G25420.1 | 40.506 | 79 | 44 | 2 | 57 | 133 | 17 | 94 | 7.17e-13 | 64.7 |
| Msa1359280 | AT5G08260.1 | 42.857 | 70 | 38 | 2 | 61 | 128 | 30 | 99 | 2.93e-11 | 60.1 |
Find 26 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATTCATTGCTAAATTATA+TGG | 0.220119 | tig0016692:+820 | Msa1359280:intergenic |
| AACCCGGTTTCAAGCATAAA+AGG | 0.293014 | tig0016692:+1052 | Msa1359280:intergenic |
| TCCATAGTGCAGTTTCTTCC+TGG | 0.300810 | tig0016692:-1091 | Msa1359280:CDS |
| AGGAGGATCCTCTCATACTA+TGG | 0.361571 | tig0016692:-855 | Msa1359280:CDS |
| AGTGGGAGTGGGAGAGAAAG+AGG | 0.390911 | tig0016692:-923 | Msa1359280:CDS |
| AAGGTATGTGGGAGTGGGAG+TGG | 0.401953 | tig0016692:-935 | Msa1359280:CDS |
| CCTCTCATACTATGGCTAAC+TGG | 0.408882 | tig0016692:-847 | Msa1359280:CDS |
| GCATAAAAGGAAGGGGTCCT+TGG | 0.426486 | tig0016692:+1065 | Msa1359280:intergenic |
| AGTATGAGAGGATCCTCCTT+TGG | 0.453738 | tig0016692:+859 | Msa1359280:intergenic |
| GATAGTAAAAGAAGAAGAAA+AGG | 0.459203 | tig0016692:+1145 | Msa1359280:intergenic |
| GGAAGGGGTCCTTGGAATCC+AGG | 0.464903 | tig0016692:+1073 | Msa1359280:intergenic |
| TCCAGGAAGAAACTGCACTA+TGG | 0.468856 | tig0016692:+1090 | Msa1359280:intergenic |
| CAGTTTCTTCCTGGATTCCA+AGG | 0.469739 | tig0016692:-1082 | Msa1359280:CDS |
| AGGTATGTGGGAGTGGGAGT+GGG | 0.490567 | tig0016692:-934 | Msa1359280:CDS |
| GTTGATAAGGTATGTGGGAG+TGG | 0.510967 | tig0016692:-941 | Msa1359280:intron |
| ATGTTTGTTGATAAGGTATG+TGG | 0.516782 | tig0016692:-947 | Msa1359280:intron |
| TTGATAAGGTATGTGGGAGT+GGG | 0.523664 | tig0016692:-940 | Msa1359280:intron |
| CGGTTTCAAGCATAAAAGGA+AGG | 0.551042 | tig0016692:+1056 | Msa1359280:intergenic |
| CCAGTTAGCCATAGTATGAG+AGG | 0.570952 | tig0016692:+847 | Msa1359280:intergenic |
| TGGTTTCGTGTTGCTAAATG+TGG | 0.572330 | tig0016692:-1115 | Msa1359280:CDS |
| TGTTTGTTGATAAGGTATGT+GGG | 0.577215 | tig0016692:-946 | Msa1359280:intron |
| GGTTTCAAGCATAAAAGGAA+GGG | 0.584126 | tig0016692:+1057 | Msa1359280:intergenic |
| GTTTCAAGCATAAAAGGAAG+GGG | 0.608914 | tig0016692:+1058 | Msa1359280:intergenic |
| CTCATACTATGGCTAACTGG+TGG | 0.626625 | tig0016692:-844 | Msa1359280:CDS |
| ATCTGAGAACAATCCAAAGG+AGG | 0.648164 | tig0016692:-872 | Msa1359280:CDS |
| TGAATCTGAGAACAATCCAA+AGG | 0.648342 | tig0016692:-875 | Msa1359280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTATTTTAAATATA+TGG | - | tig0016692:163-182 | Msa1359280:intron | 0.0% |
| !!! | ATTTTTTTATTTTAAATATA+TGG | - | tig0016692:163-182 | Msa1359280:intron | 0.0% |
| !! | AATAAAAAATGATTATCATA+AGG | + | tig0016692:639-658 | Msa1359280:intergenic | 10.0% |
| !!! | TTTATTTTTAATCTATAGTA+TGG | - | tig0016692:966-985 | Msa1359280:intron | 10.0% |
| !!! | TTATTTTTAATCTATAGTAT+GGG | - | tig0016692:967-986 | Msa1359280:intron | 10.0% |
| !! | AATAAAAAATGATTATCATA+AGG | + | tig0016692:639-658 | Msa1359280:intergenic | 10.0% |
| !!! | TTTATTTTTAATCTATAGTA+TGG | - | tig0016692:966-985 | Msa1359280:intron | 10.0% |
| !!! | TTATTTTTAATCTATAGTAT+GGG | - | tig0016692:967-986 | Msa1359280:intron | 10.0% |
| !! | TAAAAAAATCTTAAAAACCA+TGG | + | tig0016692:152-171 | Msa1359280:intergenic | 15.0% |
| !! | AACGTGATAAAAAAAAAAAT+TGG | - | tig0016692:357-376 | Msa1359280:intron | 15.0% |
| !! | TTCATATTTCTTGATTAATT+AGG | - | tig0016692:1007-1026 | Msa1359280:intron | 15.0% |
| !! | TAAAAAAATCTTAAAAACCA+TGG | + | tig0016692:152-171 | Msa1359280:intergenic | 15.0% |
| !! | AACGTGATAAAAAAAAAAAT+TGG | - | tig0016692:357-376 | Msa1359280:intron | 15.0% |
| !! | TTCATATTTCTTGATTAATT+AGG | - | tig0016692:1007-1026 | Msa1359280:intron | 15.0% |
| !!! | TTCTTTTACTATCACATATT+TGG | - | tig0016692:19-38 | Msa1359280:CDS | 20.0% |
| !! | TCATTCATTGCTAAATTATA+TGG | + | tig0016692:337-356 | Msa1359280:intergenic | 20.0% |
| !! | AAAAAAATTGGTAGAATGAT+AGG | - | tig0016692:369-388 | Msa1359280:intron | 20.0% |
| !!! | TTCTTTTACTATCACATATT+TGG | - | tig0016692:19-38 | Msa1359280:CDS | 20.0% |
| !! | TCATTCATTGCTAAATTATA+TGG | + | tig0016692:337-356 | Msa1359280:intergenic | 20.0% |
| !! | AAAAAAATTGGTAGAATGAT+AGG | - | tig0016692:369-388 | Msa1359280:intron | 20.0% |
| ! | GATAGTAAAAGAAGAAGAAA+AGG | + | tig0016692:12-31 | Msa1094840:intergenic | 25.0% |
| !! | CATATTCATGTTTGTTGATA+AGG | - | tig0016692:200-219 | Msa1359280:intron | 25.0% |
| ! | AAAAGAAGAAGAAGAAGAAA+AGG | + | tig0016692:815-834 | Msa1359280:intergenic | 25.0% |
| ! | TCTTGATTAATTAGGTATGT+TGG | - | tig0016692:1015-1034 | Msa1359280:intron | 25.0% |
| ! | GATAGTAAAAGAAGAAGAAA+AGG | + | tig0016692:12-31 | Msa1359280:intergenic | 25.0% |
| !! | CATATTCATGTTTGTTGATA+AGG | - | tig0016692:200-219 | Msa1359280:intron | 25.0% |
| ! | AAAAGAAGAAGAAGAAGAAA+AGG | + | tig0016692:815-834 | Msa1359280:intergenic | 25.0% |
| ! | TCTTGATTAATTAGGTATGT+TGG | - | tig0016692:1015-1034 | Msa1359280:intron | 25.0% |
| ! | ATGTTTGTTGATAAGGTATG+TGG | - | tig0016692:207-226 | Msa1359280:intron | 30.0% |
| ! | TGTTTGTTGATAAGGTATGT+GGG | - | tig0016692:208-227 | Msa1359280:intron | 30.0% |
| ATCATAATTGGGTGAAGAAA+CGG | + | tig0016692:415-434 | Msa1359280:intergenic | 30.0% | |
| TTCTTCACCCAATTATGATA+AGG | - | tig0016692:416-435 | Msa1359280:intron | 30.0% | |
| TCTTCACCCAATTATGATAA+GGG | - | tig0016692:417-436 | Msa1359280:intron | 30.0% | |
| ACAACAAGGGACAATAATAT+AGG | + | tig0016692:698-717 | Msa1359280:intergenic | 30.0% | |
| TGAGTGACATAACAAATGAA+TGG | - | tig0016692:751-770 | Msa1359280:intron | 30.0% | |
| AGATTTCATGATTTCCTCTT+TGG | - | tig0016692:782-801 | Msa1359280:intron | 30.0% | |
| TCTATAGTAAAGTTTCTTCC+TGG | - | tig0016692:872-891 | Msa1359280:CDS | 30.0% | |
| !! | GTTTTAAGTACAAAAGGAAG+GGG | + | tig0016692:908-927 | Msa1359280:intergenic | 30.0% |
| !!! | GGTTTTAAGTACAAAAGGAA+GGG | + | tig0016692:909-928 | Msa1359280:intergenic | 30.0% |
| ! | CTTCCTTTTGTACTTAAAAC+CGG | - | tig0016692:908-927 | Msa1359280:CDS | 30.0% |
| ! | TTCCTTTTGTACTTAAAACC+GGG | - | tig0016692:909-928 | Msa1359280:CDS | 30.0% |
| ATTAATTAGGTATGTTGGAG+TGG | - | tig0016692:1020-1039 | Msa1359280:intron | 30.0% | |
| TTAATTAGGTATGTTGGAGT+GGG | - | tig0016692:1021-1040 | Msa1359280:intron | 30.0% | |
| ! | ATGTTTGTTGATAAGGTATG+TGG | - | tig0016692:207-226 | Msa1359280:intron | 30.0% |
| ! | TGTTTGTTGATAAGGTATGT+GGG | - | tig0016692:208-227 | Msa1359280:intron | 30.0% |
| ATCATAATTGGGTGAAGAAA+CGG | + | tig0016692:415-434 | Msa1359280:intergenic | 30.0% | |
| TTCTTCACCCAATTATGATA+AGG | - | tig0016692:416-435 | Msa1359280:intron | 30.0% | |
| TCTTCACCCAATTATGATAA+GGG | - | tig0016692:417-436 | Msa1359280:intron | 30.0% | |
| ACAACAAGGGACAATAATAT+AGG | + | tig0016692:698-717 | Msa1359280:intergenic | 30.0% | |
| TGAGTGACATAACAAATGAA+TGG | - | tig0016692:751-770 | Msa1359280:intron | 30.0% | |
| AGATTTCATGATTTCCTCTT+TGG | - | tig0016692:782-801 | Msa1359280:intron | 30.0% | |
| TCTATAGTAAAGTTTCTTCC+TGG | - | tig0016692:872-891 | Msa1359280:CDS | 30.0% | |
| !! | GTTTTAAGTACAAAAGGAAG+GGG | + | tig0016692:908-927 | Msa1359280:intergenic | 30.0% |
| !!! | GGTTTTAAGTACAAAAGGAA+GGG | + | tig0016692:909-928 | Msa1359280:intergenic | 30.0% |
| ! | CTTCCTTTTGTACTTAAAAC+CGG | - | tig0016692:908-927 | Msa1359280:CDS | 30.0% |
| ! | TTCCTTTTGTACTTAAAACC+GGG | - | tig0016692:909-928 | Msa1359280:CDS | 30.0% |
| ATTAATTAGGTATGTTGGAG+TGG | - | tig0016692:1020-1039 | Msa1359280:intron | 30.0% | |
| TTAATTAGGTATGTTGGAGT+GGG | - | tig0016692:1021-1040 | Msa1359280:intron | 30.0% | |
| GTTTCAAGCATAAAAGGAAG+GGG | + | tig0016692:99-118 | Msa1359280:intergenic | 35.0% | |
| GGTTTCAAGCATAAAAGGAA+GGG | + | tig0016692:100-119 | Msa1359280:intergenic | 35.0% | |
| ! | CTTCCTTTTATGCTTGAAAC+CGG | - | tig0016692:99-118 | Msa1359280:CDS | 35.0% |
| ! | TTCCTTTTATGCTTGAAACC+GGG | - | tig0016692:100-119 | Msa1359280:CDS | 35.0% |
| AGCTAAGTGTATAACTAACC+CGG | + | tig0016692:121-140 | Msa1359280:intergenic | 35.0% | |
| TGAATCTGAGAACAATCCAA+AGG | - | tig0016692:279-298 | Msa1359280:intron | 35.0% | |
| GCATTGCCCTTATCATAATT+GGG | + | tig0016692:426-445 | Msa1359280:intergenic | 35.0% | |
| AGCATTGCCCTTATCATAAT+TGG | + | tig0016692:427-446 | Msa1359280:intergenic | 35.0% | |
| ATATAGGCAATGGACGAAAT+GGG | + | tig0016692:682-701 | Msa1359280:intergenic | 35.0% | |
| AATATAGGCAATGGACGAAA+TGG | + | tig0016692:683-702 | Msa1359280:intergenic | 35.0% | |
| AGGGACAATAATATAGGCAA+TGG | + | tig0016692:692-711 | Msa1359280:intergenic | 35.0% | |
| GACATAGTAGCATACAACAA+GGG | + | tig0016692:711-730 | Msa1359280:intergenic | 35.0% | |
| AGACATAGTAGCATACAACA+AGG | + | tig0016692:712-731 | Msa1359280:intergenic | 35.0% | |
| TATGTCTTCCAACACTCTAA+GGG | - | tig0016692:725-744 | Msa1359280:intron | 35.0% | |
| ! | TCATGATTTCCTCTTTGGAA+AGG | - | tig0016692:787-806 | Msa1359280:intron | 35.0% |
| !!! | CGGTTTTAAGTACAAAAGGA+AGG | + | tig0016692:910-929 | Msa1359280:intergenic | 35.0% |
| ACTACTTCATTGAATCAGAG+AGG | - | tig0016692:1070-1089 | Msa1359280:CDS | 35.0% | |
| GTTTCAAGCATAAAAGGAAG+GGG | + | tig0016692:99-118 | Msa1359280:intergenic | 35.0% | |
| GGTTTCAAGCATAAAAGGAA+GGG | + | tig0016692:100-119 | Msa1359280:intergenic | 35.0% | |
| ! | CTTCCTTTTATGCTTGAAAC+CGG | - | tig0016692:99-118 | Msa1359280:CDS | 35.0% |
| ! | TTCCTTTTATGCTTGAAACC+GGG | - | tig0016692:100-119 | Msa1359280:CDS | 35.0% |
| AGCTAAGTGTATAACTAACC+CGG | + | tig0016692:121-140 | Msa1359280:intergenic | 35.0% | |
| TGAATCTGAGAACAATCCAA+AGG | - | tig0016692:279-298 | Msa1359280:intron | 35.0% | |
| GCATTGCCCTTATCATAATT+GGG | + | tig0016692:426-445 | Msa1359280:intergenic | 35.0% | |
| AGCATTGCCCTTATCATAAT+TGG | + | tig0016692:427-446 | Msa1359280:intergenic | 35.0% | |
| ATATAGGCAATGGACGAAAT+GGG | + | tig0016692:682-701 | Msa1359280:intergenic | 35.0% | |
| AATATAGGCAATGGACGAAA+TGG | + | tig0016692:683-702 | Msa1359280:intergenic | 35.0% | |
| AGGGACAATAATATAGGCAA+TGG | + | tig0016692:692-711 | Msa1359280:intergenic | 35.0% | |
| GACATAGTAGCATACAACAA+GGG | + | tig0016692:711-730 | Msa1359280:intergenic | 35.0% | |
| AGACATAGTAGCATACAACA+AGG | + | tig0016692:712-731 | Msa1359280:intergenic | 35.0% | |
| TATGTCTTCCAACACTCTAA+GGG | - | tig0016692:725-744 | Msa1359280:intron | 35.0% | |
| ! | TCATGATTTCCTCTTTGGAA+AGG | - | tig0016692:787-806 | Msa1359280:intron | 35.0% |
| !!! | CGGTTTTAAGTACAAAAGGA+AGG | + | tig0016692:910-929 | Msa1359280:intergenic | 35.0% |
| ACTACTTCATTGAATCAGAG+AGG | - | tig0016692:1070-1089 | Msa1359280:CDS | 35.0% | |
| ! | TGGTTTCGTGTTGCTAAATG+TGG | - | tig0016692:39-58 | Msa1359280:CDS | 40.0% |
| CGGTTTCAAGCATAAAAGGA+AGG | + | tig0016692:101-120 | Msa1359280:intergenic | 40.0% | |
| AACCCGGTTTCAAGCATAAA+AGG | + | tig0016692:105-124 | Msa1359280:intergenic | 40.0% | |
| !! | CACTTAGCTCTATAGTTCCA+TGG | - | tig0016692:132-151 | Msa1359280:intron | 40.0% |
| TTGATAAGGTATGTGGGAGT+GGG | - | tig0016692:214-233 | Msa1359280:intron | 40.0% | |
| ATCTGAGAACAATCCAAAGG+AGG | - | tig0016692:282-301 | Msa1359280:intron | 40.0% | |
| GGCAAATAGTGCATTGTGAT+TGG | + | tig0016692:498-517 | Msa1359280:intergenic | 40.0% | |
| GCACTATTTGCCACAATTCA+AGG | - | tig0016692:506-525 | Msa1359280:intron | 40.0% | |
| AGGAGATGTGGCTGAAAAAT+AGG | - | tig0016692:526-545 | Msa1359280:intron | 40.0% | |
| CTATGTCTTCCAACACTCTA+AGG | - | tig0016692:724-743 | Msa1359280:intron | 40.0% | |
| GAAAAGGAACCTTTCCAAAG+AGG | + | tig0016692:799-818 | Msa1359280:intergenic | 40.0% | |
| !! | TGCTTTCAAGTTGCAACATG+TGG | - | tig0016692:848-867 | Msa1359280:CDS | 40.0% |
| AAGTTTCTTCCTGGATTCCA+AGG | - | tig0016692:881-900 | Msa1359280:CDS | 40.0% | |
| !!! | GACCCGGTTTTAAGTACAAA+AGG | + | tig0016692:914-933 | Msa1359280:intergenic | 40.0% |
| AGAGCTAAGTAAAACTGACC+CGG | + | tig0016692:930-949 | Msa1359280:intergenic | 40.0% | |
| TGAATCAGAGAGGAATCCAA+AGG | - | tig0016692:1080-1099 | Msa1359280:CDS | 40.0% | |
| AGTATGAGAGGATCATCCTT+TGG | + | tig0016692:1099-1118 | Msa1359280:intergenic | 40.0% | |
| AGGATGATCCTCTCATACTA+TGG | - | tig0016692:1100-1119 | Msa1359280:CDS | 40.0% | |
| ! | TGGTTTCGTGTTGCTAAATG+TGG | - | tig0016692:39-58 | Msa1359280:CDS | 40.0% |
| CGGTTTCAAGCATAAAAGGA+AGG | + | tig0016692:101-120 | Msa1359280:intergenic | 40.0% | |
| AACCCGGTTTCAAGCATAAA+AGG | + | tig0016692:105-124 | Msa1359280:intergenic | 40.0% | |
| !! | CACTTAGCTCTATAGTTCCA+TGG | - | tig0016692:132-151 | Msa1359280:intron | 40.0% |
| TTGATAAGGTATGTGGGAGT+GGG | - | tig0016692:214-233 | Msa1359280:intron | 40.0% | |
| ATCTGAGAACAATCCAAAGG+AGG | - | tig0016692:282-301 | Msa1359280:intron | 40.0% | |
| GGCAAATAGTGCATTGTGAT+TGG | + | tig0016692:498-517 | Msa1359280:intergenic | 40.0% | |
| GCACTATTTGCCACAATTCA+AGG | - | tig0016692:506-525 | Msa1359280:intron | 40.0% | |
| AGGAGATGTGGCTGAAAAAT+AGG | - | tig0016692:526-545 | Msa1359280:intron | 40.0% | |
| CTATGTCTTCCAACACTCTA+AGG | - | tig0016692:724-743 | Msa1359280:intron | 40.0% | |
| GAAAAGGAACCTTTCCAAAG+AGG | + | tig0016692:799-818 | Msa1359280:intergenic | 40.0% | |
| !! | TGCTTTCAAGTTGCAACATG+TGG | - | tig0016692:848-867 | Msa1359280:CDS | 40.0% |
| AAGTTTCTTCCTGGATTCCA+AGG | - | tig0016692:881-900 | Msa1359280:CDS | 40.0% | |
| !!! | GACCCGGTTTTAAGTACAAA+AGG | + | tig0016692:914-933 | Msa1359280:intergenic | 40.0% |
| AGAGCTAAGTAAAACTGACC+CGG | + | tig0016692:930-949 | Msa1359280:intergenic | 40.0% | |
| TGAATCAGAGAGGAATCCAA+AGG | - | tig0016692:1080-1099 | Msa1359280:CDS | 40.0% | |
| AGTATGAGAGGATCATCCTT+TGG | + | tig0016692:1099-1118 | Msa1359280:intergenic | 40.0% | |
| AGGATGATCCTCTCATACTA+TGG | - | tig0016692:1100-1119 | Msa1359280:CDS | 40.0% | |
| TCCATAGTGCAGTTTCTTCC+TGG | - | tig0016692:63-82 | Msa1359280:CDS | 45.0% | |
| TCCAGGAAGAAACTGCACTA+TGG | + | tig0016692:67-86 | Msa1359280:intergenic | 45.0% | |
| CAGTTTCTTCCTGGATTCCA+AGG | - | tig0016692:72-91 | Msa1359280:CDS | 45.0% | |
| ! | GTTGATAAGGTATGTGGGAG+TGG | - | tig0016692:213-232 | Msa1359280:intron | 45.0% |
| AGTATGAGAGGATCCTCCTT+TGG | + | tig0016692:298-317 | Msa1359280:intergenic | 45.0% | |
| AGGAGGATCCTCTCATACTA+TGG | - | tig0016692:299-318 | Msa1359280:intron | 45.0% | |
| CCAGTTAGCCATAGTATGAG+AGG | + | tig0016692:310-329 | Msa1359280:intergenic | 45.0% | |
| CCTCTCATACTATGGCTAAC+TGG | - | tig0016692:307-326 | Msa1359280:intron | 45.0% | |
| CTCATACTATGGCTAACTGG+TGG | - | tig0016692:310-329 | Msa1359280:intron | 45.0% | |
| TGCCACAATTCAAGGAGATG+TGG | - | tig0016692:514-533 | Msa1359280:intron | 45.0% | |
| AGCCACATCTCCTTGAATTG+TGG | + | tig0016692:519-538 | Msa1359280:intergenic | 45.0% | |
| CCAGTTAGCCATAGTATGAG+AGG | + | tig0016692:310-329 | Msa1359280:intergenic | 45.0% | |
| CCTCTCATACTATGGCTAAC+TGG | - | tig0016692:307-326 | Msa1359280:intron | 45.0% | |
| CTCATACTATGGCTAACTGG+TGG | - | tig0016692:310-329 | Msa1359280:intron | 45.0% | |
| TCCATAGTGCAGTTTCTTCC+TGG | - | tig0016692:63-82 | Msa1359280:CDS | 45.0% | |
| TCCAGGAAGAAACTGCACTA+TGG | + | tig0016692:67-86 | Msa1359280:intergenic | 45.0% | |
| CAGTTTCTTCCTGGATTCCA+AGG | - | tig0016692:72-91 | Msa1359280:CDS | 45.0% | |
| ! | GTTGATAAGGTATGTGGGAG+TGG | - | tig0016692:213-232 | Msa1359280:intron | 45.0% |
| AGTATGAGAGGATCCTCCTT+TGG | + | tig0016692:298-317 | Msa1359280:intergenic | 45.0% | |
| AGGAGGATCCTCTCATACTA+TGG | - | tig0016692:299-318 | Msa1359280:intron | 45.0% | |
| CCAGTTAGCCATAGTATGAG+AGG | + | tig0016692:310-329 | Msa1359280:intergenic | 45.0% | |
| CCTCTCATACTATGGCTAAC+TGG | - | tig0016692:307-326 | Msa1359280:intron | 45.0% | |
| CTCATACTATGGCTAACTGG+TGG | - | tig0016692:310-329 | Msa1359280:intron | 45.0% | |
| TGCCACAATTCAAGGAGATG+TGG | - | tig0016692:514-533 | Msa1359280:intron | 45.0% | |
| AGCCACATCTCCTTGAATTG+TGG | + | tig0016692:519-538 | Msa1359280:intergenic | 45.0% | |
| CCAGTTAGCCATAGTATGAG+AGG | + | tig0016692:310-329 | Msa1359280:intergenic | 45.0% | |
| CCTCTCATACTATGGCTAAC+TGG | - | tig0016692:307-326 | Msa1359280:intron | 45.0% | |
| CTCATACTATGGCTAACTGG+TGG | - | tig0016692:310-329 | Msa1359280:intron | 45.0% | |
| GCATAAAAGGAAGGGGTCCT+TGG | + | tig0016692:92-111 | Msa1359280:intergenic | 50.0% | |
| ACTCAGCTCCCTTAGAGTGT+TGG | + | tig0016692:736-755 | Msa1359280:intergenic | 50.0% | |
| GTACAAAAGGAAGGGGTCCT+TGG | + | tig0016692:901-920 | Msa1359280:intergenic | 50.0% | |
| TGTTGGAGTGGGTGAACAAG+AGG | - | tig0016692:1032-1051 | Msa1359280:intron | 50.0% | |
| GCATAAAAGGAAGGGGTCCT+TGG | + | tig0016692:92-111 | Msa1359280:intergenic | 50.0% | |
| ACTCAGCTCCCTTAGAGTGT+TGG | + | tig0016692:736-755 | Msa1359280:intergenic | 50.0% | |
| GTACAAAAGGAAGGGGTCCT+TGG | + | tig0016692:901-920 | Msa1359280:intergenic | 50.0% | |
| TGTTGGAGTGGGTGAACAAG+AGG | - | tig0016692:1032-1051 | Msa1359280:intron | 50.0% | |
| AAGGTATGTGGGAGTGGGAG+TGG | - | tig0016692:219-238 | Msa1359280:intron | 55.0% | |
| AGGTATGTGGGAGTGGGAGT+GGG | - | tig0016692:220-239 | Msa1359280:intron | 55.0% | |
| AGTGGGAGTGGGAGAGAAAG+AGG | - | tig0016692:231-250 | Msa1359280:intron | 55.0% | |
| ! | CTATGGCTAACTGGTGGACC+TGG | - | tig0016692:316-335 | Msa1359280:intron | 55.0% |
| CCAGACAAAGCAGAGCAACC+AGG | + | tig0016692:1138-1157 | Msa1359280:intergenic | 55.0% | |
| CCTGGTTGCTCTGCTTTGTC+TGG | - | tig0016692:1135-1154 | Msa1359280:CDS | 55.0% | |
| AAGGTATGTGGGAGTGGGAG+TGG | - | tig0016692:219-238 | Msa1359280:intron | 55.0% | |
| AGGTATGTGGGAGTGGGAGT+GGG | - | tig0016692:220-239 | Msa1359280:intron | 55.0% | |
| AGTGGGAGTGGGAGAGAAAG+AGG | - | tig0016692:231-250 | Msa1359280:intron | 55.0% | |
| ! | CTATGGCTAACTGGTGGACC+TGG | - | tig0016692:316-335 | Msa1359280:intron | 55.0% |
| CCAGACAAAGCAGAGCAACC+AGG | + | tig0016692:1138-1157 | Msa1359280:intergenic | 55.0% | |
| CCTGGTTGCTCTGCTTTGTC+TGG | - | tig0016692:1135-1154 | Msa1359280:CDS | 55.0% | |
| GGAAGGGGTCCTTGGAATCC+AGG | + | tig0016692:84-103 | Msa1359280:intergenic | 60.0% | |
| GGAAGGGGTCCTTGGAATCC+AGG | + | tig0016692:84-103 | Msa1359280:intergenic | 60.0% | |
| GGAAGGGGTCCTTGGAATCC+AGG | + | tig0016692:84-103 | Msa1359280:intergenic | 60.0% | |
| GGAAGGGGTCCTTGGAATCC+AGG | + | tig0016692:84-103 | Msa1359280:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0016692 | gene | 3 | 1173 | 3 | ID=Msa1359280;Name=Msa1359280 |
| tig0016692 | mRNA | 3 | 1173 | 3 | ID=Msa1359280-mRNA-1;Parent=Msa1359280;Name=Msa1359280-mRNA-1;_AED=0.68;_eAED=0.68;_QI=0|0|0|0.33|1|1|3|0|134 |
| tig0016692 | exon | 1055 | 1173 | 1055 | ID=Msa1359280-mRNA-1:exon:11272;Parent=Msa1359280-mRNA-1 |
| tig0016692 | exon | 817 | 954 | 817 | ID=Msa1359280-mRNA-1:exon:11271;Parent=Msa1359280-mRNA-1 |
| tig0016692 | exon | 3 | 147 | 3 | ID=Msa1359280-mRNA-1:exon:11270;Parent=Msa1359280-mRNA-1 |
| tig0016692 | CDS | 1055 | 1173 | 1055 | ID=Msa1359280-mRNA-1:cds;Parent=Msa1359280-mRNA-1 |
| tig0016692 | CDS | 817 | 954 | 817 | ID=Msa1359280-mRNA-1:cds;Parent=Msa1359280-mRNA-1 |
| tig0016692 | CDS | 3 | 147 | 3 | ID=Msa1359280-mRNA-1:cds;Parent=Msa1359280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
