AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0691130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0691130 MtrunA17_Chr4g0040211 99.422 346 2 0 1 346 1 346 0.0 714
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0691130 AT4G22930.1 78.198 344 75 0 1 344 33 376 0.0 592
Msa0691130 AT4G22930.2 78.198 344 75 0 1 344 33 376 0.0 592

Find 103 sgRNAs with CRISPR-Local

Find 434 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAATCTTTGACTTGTTTC+TGG 0.085321 4_4:+59064404 None:intergenic
TGCGGAAGCCTTCGAATTAA+AGG 0.196952 4_4:+59066533 None:intergenic
TTAGAGGGTACGACCTAATT+TGG 0.215686 4_4:+59070656 None:intergenic
CCTCACAGTGCAAAGCATTT+TGG 0.224625 4_4:-59067858 Msa0691130:CDS
TATTCAGATGTGGCATTTAT+TGG 0.225798 4_4:-59064261 Msa0691130:three_prime_UTR
CTTATTCAATGTGCCAAATT+AGG 0.240841 4_4:-59070669 Msa0691130:five_prime_UTR
CTCATAATATGCAACATTTC+GGG 0.269436 4_4:-59064165 Msa0691130:three_prime_UTR
TGAGCAAGGTTTGCCATTAT+TGG 0.285780 4_4:-59067357 Msa0691130:intron
TGTCATGAGAGGAGTGAAAT+TGG 0.300666 4_4:+59067737 None:intergenic
AGTGATAGGTGGTTTCAAAT+TGG 0.303522 4_4:+59067818 None:intergenic
ACTCATAATATGCAACATTT+CGG 0.312371 4_4:-59064166 Msa0691130:three_prime_UTR
AGTAAACAAATTACCAATAA+TGG 0.320625 4_4:+59067344 None:intergenic
TTTAATGGACCTGACTTCTA+TGG 0.320968 4_4:-59064432 Msa0691130:CDS
TTAATCTTTGACTTGTTTCT+GGG 0.339416 4_4:+59064405 None:intergenic
GATATTATTCCCATGTTTGC+CGG 0.347318 4_4:-59064330 Msa0691130:CDS
ATGAGTTGTTGTTAATTTAG+AGG 0.355274 4_4:+59070640 None:intergenic
GCAGAAGATGTGGTAGTGAT+AGG 0.356519 4_4:+59067804 None:intergenic
ACCAGTTGGTACAAGCTATC+AGG 0.362028 4_4:+59064192 None:intergenic
TCCACATGATAGGCGTAAAA+AGG 0.378745 4_4:-59065584 Msa0691130:CDS
TTTGTAGAGTCTTGCAAAGA+AGG 0.398653 4_4:-59066464 Msa0691130:intron
GCATATAGTGATAGAGCAAC+CGG 0.400997 4_4:+59065526 None:intergenic
TTATTCTGTTCTTGAGGAAA+TGG 0.405095 4_4:-59067381 Msa0691130:CDS
GTGATAGGTGGTTTCAAATT+GGG 0.415995 4_4:+59067819 None:intergenic
AGTATGTTAATCTAGTTAGT+TGG 0.430882 4_4:-59064238 Msa0691130:three_prime_UTR
ACCTGATAGCTTGTACCAAC+TGG 0.433973 4_4:-59064193 Msa0691130:three_prime_UTR
CTGATAGTGCTCCACATGAT+AGG 0.434036 4_4:-59065594 Msa0691130:CDS
CAAAATGCTTTGCACTGTGA+GGG 0.440873 4_4:+59067859 None:intergenic
GGCTGGTGCACTTGACAAGC+TGG 0.441125 4_4:-59064469 Msa0691130:CDS
TAGGTTTCAGCTTAAATAGC+TGG 0.444422 4_4:-59064085 Msa0691130:three_prime_UTR
CTTGCAAGTTGAATCTCATT+CGG 0.451170 4_4:+59067690 None:intergenic
TATTGAGATTGTAATTTAAG+TGG 0.452365 4_4:-59064061 Msa0691130:three_prime_UTR
GGAAGCATTGCTTATTTGAC+TGG 0.456676 4_4:-59064292 Msa0691130:exon
GAAGGATGGCTTCGAAGATC+CGG 0.458151 4_4:+59070480 None:intergenic
GAGTGTCTATCGTTTCCATT+TGG 0.458488 4_4:-59064354 Msa0691130:CDS
TTAGTTGGAGTTGGTTACCT+TGG 0.459230 4_4:-59064223 Msa0691130:three_prime_UTR
TTAATCTAGTTAGTTGGAGT+TGG 0.460803 4_4:-59064232 Msa0691130:three_prime_UTR
AATCGCAATGCTTTGTTCCA+AGG 0.460976 4_4:-59066306 Msa0691130:CDS
AAGTGTTTCACCGGCAAACA+TGG 0.467013 4_4:+59064320 None:intergenic
ATTGAGATTGTAATTTAAGT+GGG 0.467812 4_4:-59064060 Msa0691130:three_prime_UTR
AAGTCTTAGCATCTGCTACT+TGG 0.474592 4_4:+59070455 None:intergenic
AACAGCAGAGACAGAAAGAA+TGG 0.480032 4_4:-59067952 Msa0691130:exon
GTCTCTGCTGTTGCTTTCGA+CGG 0.487907 4_4:+59067963 None:intergenic
AGATGAAGATGAAAATCATC+AGG 0.495760 4_4:+59067912 None:intergenic
TTCCCATTCAAGTGTTTCAC+CGG 0.499971 4_4:+59064311 None:intergenic
TCATACGCCTCAGCTGTTAC+CGG 0.500123 4_4:-59070499 Msa0691130:five_prime_UTR
TGAGTTGTTGTTAATTTAGA+GGG 0.500305 4_4:+59070641 None:intergenic
TGCCGGTGAAACACTTGAAT+GGG 0.503432 4_4:-59064313 Msa0691130:CDS
GAGTTTGTTGTAGCTCCAGC+AGG 0.506473 4_4:+59067437 None:intergenic
GAATCTGCTTGTGGATGTGC+TGG 0.507355 4_4:-59065562 Msa0691130:CDS
TGCTGCAGAGGGTTCACCAT+CGG 0.508724 4_4:-59068071 Msa0691130:five_prime_UTR
TTAAACTGAGGAAATCTCCT+TGG 0.508792 4_4:-59064386 Msa0691130:CDS
TGTGAGGCTGCAAGCCACCT+TGG 0.516437 4_4:+59066289 None:intergenic
CTATATAGTGTGTGCTGCAG+AGG 0.517356 4_4:-59068083 Msa0691130:intron
TACAAATTTAACAGCATCCA+TGG 0.517829 4_4:+59066481 None:intergenic
GGTGTGAAGTTGTATCCTGC+TGG 0.522096 4_4:-59067452 Msa0691130:CDS
ATGGGAATAATATCTCCAAA+TGG 0.523399 4_4:+59064339 None:intergenic
TTCGGGCGTATCAGAAATGC+GGG 0.523896 4_4:-59064148 Msa0691130:three_prime_UTR
TCGAAGGCTTCCGCAATTGA+AGG 0.525030 4_4:-59066525 Msa0691130:CDS
TTGCCGGTGAAACACTTGAA+TGG 0.530630 4_4:-59064314 Msa0691130:CDS
TGCTCTATCACTATATGCCA+AGG 0.536801 4_4:-59065521 Msa0691130:CDS
AGCATCTGCTACTTGGAAGA+AGG 0.538184 4_4:+59070462 None:intergenic
GGGCATTCAGAAATATGATC+AGG 0.540133 4_4:-59064040 Msa0691130:three_prime_UTR
CTTGAGGAAATGGTTGAGCA+AGG 0.541121 4_4:-59067371 Msa0691130:CDS
CTGGGGATACCATAGAAGTC+AGG 0.547025 4_4:+59064423 None:intergenic
ATTGTTTCAGCTATCACTAG+TGG 0.552041 4_4:-59065640 Msa0691130:CDS
CGCAATGCTTTGTTCCAAGG+TGG 0.554240 4_4:-59066303 Msa0691130:CDS
AAATTGTTATTCTGTTCTTG+AGG 0.556275 4_4:-59067387 Msa0691130:CDS
TTACGAAAACAGGGTGCCGA+TGG 0.565921 4_4:+59068055 None:intergenic
TCCGCAATTGAAGGTTGTGA+TGG 0.566851 4_4:-59066516 Msa0691130:CDS
CAGTATACATGACAGGTTCA+CGG 0.568492 4_4:-59066623 Msa0691130:intron
CCAAAATGCTTTGCACTGTG+AGG 0.574508 4_4:+59067858 None:intergenic
TATATAGTGTGTGCTGCAGA+GGG 0.575920 4_4:-59068082 Msa0691130:intron
TGCTGGCATCTACAACTCCC+CGG 0.579653 4_4:-59065545 Msa0691130:CDS
AGACACTCGGGTACTCTCCA+AGG 0.597244 4_4:+59064369 None:intergenic
AGTGTTTCACCGGCAAACAT+GGG 0.600430 4_4:+59064321 None:intergenic
ATATTATGAGTGTAACCAGT+TGG 0.601304 4_4:+59064178 None:intergenic
AAAATGCTTTGCACTGTGAG+GGG 0.602141 4_4:+59067860 None:intergenic
GTGGAGCACTATCAGTTCCA+AGG 0.602259 4_4:+59065602 None:intergenic
TAATCTTTGACTTGTTTCTG+GGG 0.603480 4_4:+59064406 None:intergenic
AGTGAGATCACAATAGTCGA+TGG 0.603638 4_4:+59063878 None:intergenic
GGCAGTTGAAGCTTCTCTGT+CGG 0.607309 4_4:+59067984 None:intergenic
GCTACAACAAACTCACAAGA+TGG 0.612227 4_4:-59067428 Msa0691130:CDS
GAAGATGTGGTAGTGATAGG+TGG 0.615955 4_4:+59067807 None:intergenic
GGTCTCTGCGTATTCAGATG+TGG 0.620264 4_4:-59064271 Msa0691130:three_prime_UTR
GTGAGATAAAGTGTCATGAG+AGG 0.623350 4_4:+59067726 None:intergenic
TCTGCTACTTGGAAGAAGGA+TGG 0.624494 4_4:+59070466 None:intergenic
ATAAGAAATAGCAGAAGATG+TGG 0.624539 4_4:+59067794 None:intergenic
CATATAGTGATAGAGCAACC+GGG 0.624630 4_4:+59065527 None:intergenic
AAATGGAAACGATAGACACT+CGG 0.625624 4_4:+59064356 None:intergenic
TTTCATCTTCATCTTCGCGA+CGG 0.628549 4_4:-59067903 Msa0691130:CDS
CGAAGATCCGGTAACAGCTG+AGG 0.634375 4_4:+59070492 None:intergenic
TCCATCACAACCTTCAATTG+CGG 0.639588 4_4:+59066515 None:intergenic
CAACGCTGCAGAGTTGAGCA+AGG 0.655555 4_4:-59068007 Msa0691130:five_prime_UTR
TTTCGGGCGTATCAGAAATG+CGG 0.658277 4_4:-59064149 Msa0691130:three_prime_UTR
TACATGACAGGTTCACGGAG+AGG 0.662980 4_4:-59066618 Msa0691130:intron
GCTATCAGGTTCTGTCACCA+AGG 0.666725 4_4:+59064206 None:intergenic
AATGGAAACGATAGACACTC+GGG 0.667966 4_4:+59064357 None:intergenic
ACGGGAAGACAGTAATTGTG+AGG 0.675653 4_4:+59066273 None:intergenic
GATGGAGCATATTACTACCA+TGG 0.681818 4_4:-59066498 Msa0691130:CDS
GTATAAATTATAAATAACAC+AGG 0.696700 4_4:-59063902 Msa0691130:three_prime_UTR
ACAAGTCAAAGATTAAACTG+AGG 0.713629 4_4:-59064398 Msa0691130:CDS
ATATAGTGATAGAGCAACCG+GGG 0.715068 4_4:+59065528 None:intergenic
CGATTGAGAAGAATATGCTG+AGG 0.789742 4_4:+59066324 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTAAATTATTTTTATTT+AGG - chr4_4:59066985-59067004 Msa0691130:intron 0.0%
!!! ATATTTTAGAAAATTATATC+AGG - chr4_4:59065454-59065473 Msa0691130:intron 10.0%
!!! TATTTTAGAAAATTATATCA+GGG - chr4_4:59065455-59065474 Msa0691130:intron 10.0%
!! AAAAAAAGAAACAAAAAATT+GGG + chr4_4:59067286-59067305 None:intergenic 10.0%
!! CTAATTATTATCTAATAACT+AGG + chr4_4:59064438-59064457 None:intergenic 15.0%
!!! TATCTGAAACTAAAATAAAA+TGG + chr4_4:59065219-59065238 None:intergenic 15.0%
!! AGAATATTAAAATCTGATAT+TGG + chr4_4:59065429-59065448 None:intergenic 15.0%
!! AAGTTTATCTTAAAAAAGAA+CGG - chr4_4:59065702-59065721 Msa0691130:intron 15.0%
!!! TAACTTTTGGTTTTTTAAAA+TGG - chr4_4:59066290-59066309 Msa0691130:CDS 15.0%
!!! AACTTTTGGTTTTTTAAAAT+GGG - chr4_4:59066291-59066310 Msa0691130:CDS 15.0%
!!! TTTTTTGGATTTAATGAAAT+TGG - chr4_4:59066322-59066341 Msa0691130:CDS 15.0%
!!! TTTTTGGATTTAATGAAATT+GGG - chr4_4:59066323-59066342 Msa0691130:CDS 15.0%
!! ATATAGATAAAAAAAAAACG+AGG + chr4_4:59066459-59066478 None:intergenic 15.0%
!! AAAAAAGAAACAAAAAATTG+GGG + chr4_4:59067285-59067304 None:intergenic 15.0%
!! CAAAAAAAGAAACAAAAAAT+TGG + chr4_4:59067287-59067306 None:intergenic 15.0%
!!! ATTTTTTGTTTCTTTTTTTG+TGG - chr4_4:59067287-59067306 Msa0691130:intron 15.0%
!!! TTTTTTGTTTCTTTTTTTGT+GGG - chr4_4:59067288-59067307 Msa0691130:intron 15.0%
!! AAAACATAATTCTATTACAA+AGG + chr4_4:59067717-59067736 None:intergenic 15.0%
!!! TTGTAATAGAATTATGTTTT+TGG - chr4_4:59067717-59067736 Msa0691130:CDS 15.0%
!!! TTATAAACAAATTCTTTTTC+AGG + chr4_4:59068536-59068555 None:intergenic 15.0%
!! GTTAAAATATTATTTCCAAA+AGG - chr4_4:59069411-59069430 Msa0691130:intron 15.0%
!!! AAATAGTAATAATAGTGTTT+TGG - chr4_4:59069482-59069501 Msa0691130:intron 15.0%
!!! TAATATTGTTTCTCTTTAAT+TGG + chr4_4:59069556-59069575 None:intergenic 15.0%
!! GTATAAATTATAAATAACAC+AGG - chr4_4:59070654-59070673 Msa0691130:five_prime_UTR 15.0%
!! ATTATCTAATAACTAGGTAT+AGG + chr4_4:59064432-59064451 None:intergenic 20.0%
!!! TAAACAAACTTATTTCTACT+AGG - chr4_4:59064675-59064694 Msa0691130:intron 20.0%
!!! ATACCTATATTTTGTACAAT+TGG - chr4_4:59064808-59064827 Msa0691130:intron 20.0%
!! ATAATAAAACGATACTTTAC+CGG + chr4_4:59064878-59064897 None:intergenic 20.0%
!! ATTGAATTGTAATTGTTGAA+CGG - chr4_4:59065025-59065044 Msa0691130:intron 20.0%
!! AAACTAAAATAAAATGGAAC+GGG + chr4_4:59065213-59065232 None:intergenic 20.0%
!! GAAACTAAAATAAAATGGAA+CGG + chr4_4:59065214-59065233 None:intergenic 20.0%
!!! AAGGTTTTATTCTTGAAAAA+TGG - chr4_4:59065262-59065281 Msa0691130:intron 20.0%
!!! AGGTTTTATTCTTGAAAAAT+GGG - chr4_4:59065263-59065282 Msa0691130:intron 20.0%
!! TACTTACAAAAAAAATGACT+CGG + chr4_4:59065405-59065424 None:intergenic 20.0%
!!! ACTAAACTACATTTTTAAAG+TGG + chr4_4:59065611-59065630 None:intergenic 20.0%
!! AAACCATATTAAAAGAAAAC+CGG - chr4_4:59065636-59065655 Msa0691130:CDS 20.0%
!! ATAAAAAAAAAACGAGGTTA+AGG + chr4_4:59066453-59066472 None:intergenic 20.0%
!! AGTAAACAAATTACCAATAA+TGG + chr4_4:59067215-59067234 None:intergenic 20.0%
!! AATTAAGTTAATTGTCCAAA+CGG + chr4_4:59067341-59067360 None:intergenic 20.0%
!! AATATAACTGCTTATGTATA+TGG - chr4_4:59067362-59067381 Msa0691130:CDS 20.0%
!!! GATTATTTGATTTTATCTAC+AGG + chr4_4:59067552-59067571 None:intergenic 20.0%
!!! ATTTTTATGCAACAGTATAA+TGG + chr4_4:59067588-59067607 None:intergenic 20.0%
!! TACAAAAATAGCAAATTATC+AGG + chr4_4:59068187-59068206 None:intergenic 20.0%
!!! GATAATTTGCTATTTTTGTA+AGG - chr4_4:59068187-59068206 Msa0691130:intron 20.0%
!! GAGTAATGATTTAAAAAGTA+CGG - chr4_4:59068569-59068588 Msa0691130:intron 20.0%
!!! ATTTTATAATATTCTTGTGG+TGG - chr4_4:59068592-59068611 Msa0691130:intron 20.0%
!! AAGTTTATATTAGATTACGT+AGG - chr4_4:59069082-59069101 Msa0691130:intron 20.0%
!!! AAAAATCTTAATCTAGCTTT+TGG - chr4_4:59069793-59069812 Msa0691130:intron 20.0%
!! TATTGAGATTGTAATTTAAG+TGG - chr4_4:59070495-59070514 Msa0691130:five_prime_UTR 20.0%
!! ATTGAGATTGTAATTTAAGT+GGG - chr4_4:59070496-59070515 Msa0691130:five_prime_UTR 20.0%
!! TGAGTTGTTGTTAATTTAGA+GGG + chr4_4:59063918-59063937 None:intergenic 25.0%
!! ATGAGTTGTTGTTAATTTAG+AGG + chr4_4:59063919-59063938 None:intergenic 25.0%
! TTACAATAACCAAACCTAAA+AGG + chr4_4:59064281-59064300 None:intergenic 25.0%
! ATAGTTTAACCAAGAATAAC+TGG - chr4_4:59064355-59064374 Msa0691130:CDS 25.0%
! TAGTTTAACCAAGAATAACT+GGG - chr4_4:59064356-59064375 Msa0691130:CDS 25.0%
!!! TTTTCAAGTCAGAACTAATT+AGG - chr4_4:59064528-59064547 Msa0691130:intron 25.0%
!!! GTTTTATTTCATGAATACAC+AGG - chr4_4:59064578-59064597 Msa0691130:intron 25.0%
!! TAGTTTGTACTACTAAGTAT+AGG - chr4_4:59064736-59064755 Msa0691130:intron 25.0%
! CTTCCAATTGTACAAAATAT+AGG + chr4_4:59064814-59064833 None:intergenic 25.0%
! AACCAAAATATGAAATTGTG+AGG - chr4_4:59064845-59064864 Msa0691130:intron 25.0%
!! AACCTCACAATTTCATATTT+TGG + chr4_4:59064850-59064869 None:intergenic 25.0%
! AGTATATACAACAGCTAAAA+CGG - chr4_4:59064949-59064968 Msa0691130:intron 25.0%
! AAATCTTGAACAGAAAGTAA+AGG + chr4_4:59064999-59065018 None:intergenic 25.0%
! CAAATACAAGTTTATGTAGA+TGG - chr4_4:59065065-59065084 Msa0691130:intron 25.0%
! AAACAATTGGTTAGTGATTA+TGG - chr4_4:59065104-59065123 Msa0691130:intron 25.0%
! TTAGTTAGTGACTGATATTA+TGG - chr4_4:59065152-59065171 Msa0691130:intron 25.0%
! TGATATTATGGTTGTAGTTA+GGG - chr4_4:59065164-59065183 Msa0691130:intron 25.0%
!!! TATTTTAGTTTCAGATAGAC+AGG - chr4_4:59065222-59065241 Msa0691130:intron 25.0%
! TTGAATCTTGCATTTATGTA+AGG - chr4_4:59065355-59065374 Msa0691130:intron 25.0%
! ACTTACAAAAAAAATGACTC+GGG + chr4_4:59065404-59065423 None:intergenic 25.0%
!!! ACTACATTTTTAAAGTGGAT+TGG + chr4_4:59065606-59065625 None:intergenic 25.0%
!! GGTTTTCTTTTAATATGGTT+TGG + chr4_4:59065637-59065656 None:intergenic 25.0%
!!! AAACCGGTTTTCTTTTAATA+TGG + chr4_4:59065642-59065661 None:intergenic 25.0%
! AACCATTTCACAATAAAAAC+CGG + chr4_4:59065658-59065677 None:intergenic 25.0%
!!! AATACTAGTTTTTCCTAGAT+TGG - chr4_4:59065746-59065765 Msa0691130:intron 25.0%
! GTAATATGAGAAATGAATGA+TGG - chr4_4:59066196-59066215 Msa0691130:intron 25.0%
!! AGAAATGAATGATGGAAATT+AGG - chr4_4:59066204-59066223 Msa0691130:intron 25.0%
!!! AAATGGGTACAGTTTTTTTT+TGG - chr4_4:59066307-59066326 Msa0691130:CDS 25.0%
!!! AACCTTTTTTTACGAAAACA+GGG + chr4_4:59066513-59066532 None:intergenic 25.0%
!! GAAAAAAGTGGATTTGTTTA+TGG - chr4_4:59067083-59067102 Msa0691130:intron 25.0%
!! AAATTGTTATTCTGTTCTTG+AGG - chr4_4:59067169-59067188 Msa0691130:intron 25.0%
! ATTAAGTTAATTGTCCAAAC+GGG + chr4_4:59067340-59067359 None:intergenic 25.0%
! ATATTTCCATAATCTCTCTA+AGG + chr4_4:59067456-59067475 None:intergenic 25.0%
! AATATGCTGAAAAAAGCTTA+CGG - chr4_4:59067471-59067490 Msa0691130:CDS 25.0%
! AAAATGTATTTCATGCTCTA+TGG - chr4_4:59067603-59067622 Msa0691130:intron 25.0%
! GTTTGTAGATAATTTCATTG+TGG + chr4_4:59067763-59067782 None:intergenic 25.0%
! ATACAAAACATGCATAAAGA+AGG + chr4_4:59067856-59067875 None:intergenic 25.0%
!! AGGTATTGTAGTAAATTACT+TGG - chr4_4:59068112-59068131 Msa0691130:intron 25.0%
! GGTATTGTAGTAAATTACTT+GGG - chr4_4:59068113-59068132 Msa0691130:intron 25.0%
!!! TTAGAGTTAAGAGAGTTTTT+TGG - chr4_4:59068356-59068375 Msa0691130:intron 25.0%
!! TGGTTTAGATTTTCAAACAA+TGG - chr4_4:59068376-59068395 Msa0691130:intron 25.0%
! CATTCAATGAATCTGAAAAA+AGG + chr4_4:59068461-59068480 None:intergenic 25.0%
! ATAATATACACCAGATACAT+TGG - chr4_4:59068498-59068517 Msa0691130:intron 25.0%
!! TTTTAAATCATTACTCCCTT+CGG + chr4_4:59068565-59068584 None:intergenic 25.0%
!! CGGATTTTATAATATTCTTG+TGG - chr4_4:59068589-59068608 Msa0691130:intron 25.0%
! TAATTTCACAAATGTGCATA+TGG - chr4_4:59069125-59069144 Msa0691130:intron 25.0%
! AATTTCACAAATGTGCATAT+GGG - chr4_4:59069126-59069145 Msa0691130:intron 25.0%
! ATAAACTGCTTATTTGAGTA+TGG - chr4_4:59069973-59069992 Msa0691130:intron 25.0%
!!! TTAATCTTTGACTTGTTTCT+GGG + chr4_4:59070154-59070173 None:intergenic 25.0%
!!! TTTAATCTTTGACTTGTTTC+TGG + chr4_4:59070155-59070174 None:intergenic 25.0%
! AGTATGTTAATCTAGTTAGT+TGG - chr4_4:59070318-59070337 Msa0691130:intron 25.0%
! ACTCATAATATGCAACATTT+CGG - chr4_4:59070390-59070409 Msa0691130:intron 25.0%
!!! CTTTTATTTCTTCGAAAGTT+AGG - chr4_4:59070452-59070471 Msa0691130:five_prime_UTR 25.0%
! TTACTTGTGAAAAAGAAATG+AGG + chr4_4:59070593-59070612 None:intergenic 25.0%
!!! TCTTTTTCACAAGTAAATGA+TGG - chr4_4:59070597-59070616 Msa0691130:five_prime_UTR 25.0%
!!! CTTTTTCACAAGTAAATGAT+GGG - chr4_4:59070598-59070617 Msa0691130:five_prime_UTR 25.0%
CTTATTCAATGTGCCAAATT+AGG - chr4_4:59063887-59063906 Msa0691130:three_prime_UTR 30.0%
ACCTAAAAGGTAAAAAGGAA+CGG + chr4_4:59064268-59064287 None:intergenic 30.0%
!!! TCCTTTTTACCTTTTAGGTT+TGG - chr4_4:59064269-59064288 Msa0691130:three_prime_UTR 30.0%
ACCAAACCTAAAAGGTAAAA+AGG + chr4_4:59064273-59064292 None:intergenic 30.0%
! TCACATCGTTGATTAGAATT+TGG + chr4_4:59064308-59064327 None:intergenic 30.0%
TGGGAGAAGATAGATAATTA+GGG - chr4_4:59064375-59064394 Msa0691130:CDS 30.0%
! ATAGATAATTAGGGGCATAT+AGG - chr4_4:59064384-59064403 Msa0691130:CDS 30.0%
CTAATAACTAGGTATAGGTA+TGG + chr4_4:59064427-59064446 None:intergenic 30.0%
! GTTTGTTTAAAGTAGATAGC+AGG + chr4_4:59064664-59064683 None:intergenic 30.0%
TACCGACAGGTAAATAATAT+TGG - chr4_4:59064909-59064928 Msa0691130:intron 30.0%
ACCGACAGGTAAATAATATT+GGG - chr4_4:59064910-59064929 Msa0691130:intron 30.0%
ACCCAATATTATTTACCTGT+CGG + chr4_4:59064914-59064933 None:intergenic 30.0%
GTATATACTATTGAGTGTGA+GGG + chr4_4:59064938-59064957 None:intergenic 30.0%
TGTATATACTATTGAGTGTG+AGG + chr4_4:59064939-59064958 None:intergenic 30.0%
TTGTAATTGTTGAACGGTAT+TGG - chr4_4:59065031-59065050 Msa0691130:intron 30.0%
TTAGAGATCACACAAACAAT+TGG - chr4_4:59065091-59065110 Msa0691130:intron 30.0%
CTGATATTATGGTTGTAGTT+AGG - chr4_4:59065163-59065182 Msa0691130:intron 30.0%
AATGCAAGATTCAATTCTCA+GGG + chr4_4:59065349-59065368 None:intergenic 30.0%
AAATGCAAGATTCAATTCTC+AGG + chr4_4:59065350-59065369 None:intergenic 30.0%
!! AACCGGTTTTTATTGTGAAA+TGG - chr4_4:59065653-59065672 Msa0691130:intron 30.0%
AAAAAAGAACGGTTCATATG+TGG - chr4_4:59065713-59065732 Msa0691130:intron 30.0%
GAGAAATGTAAAACCAATCT+AGG + chr4_4:59065762-59065781 None:intergenic 30.0%
AAGAAGAAGAAGAAGAAGAA+TGG + chr4_4:59065873-59065892 None:intergenic 30.0%
GAATTGAAGAATGCAATGAA+TGG + chr4_4:59065914-59065933 None:intergenic 30.0%
! ACTGTTCAAACCATTGTTTT+GGG + chr4_4:59065992-59066011 None:intergenic 30.0%
!! TGTTATTGGTAGTGGTAATT+GGG - chr4_4:59066044-59066063 Msa0691130:intron 30.0%
TTATTGCTTCTAACACCATT+AGG - chr4_4:59066085-59066104 Msa0691130:intron 30.0%
ATCGAAATTGTTCATCCTAA+TGG + chr4_4:59066103-59066122 None:intergenic 30.0%
ATTAGGATGAACAATTTCGA+TGG - chr4_4:59066102-59066121 Msa0691130:intron 30.0%
ATGAATTTCACATTTCTCAG+AGG + chr4_4:59066154-59066173 None:intergenic 30.0%
TCATAGAAATCGTGTGAATT+TGG - chr4_4:59066170-59066189 Msa0691130:intron 30.0%
! TGAATGATGGAAATTAGGAA+TGG - chr4_4:59066209-59066228 Msa0691130:intron 30.0%
! GGAGAAATTAGGTTAACTTT+TGG - chr4_4:59066277-59066296 Msa0691130:CDS 30.0%
! CTGAACTGTTTTACAAAATC+CGG + chr4_4:59066374-59066393 None:intergenic 30.0%
!!! CAACCTTTTTTTACGAAAAC+AGG + chr4_4:59066514-59066533 None:intergenic 30.0%
AGATGAAGATGAAAATCATC+AGG + chr4_4:59066647-59066666 None:intergenic 30.0%
ATAAGAAATAGCAGAAGATG+TGG + chr4_4:59066765-59066784 None:intergenic 30.0%
CAAGTTGTGTAGTAGTTTAT+TGG + chr4_4:59067039-59067058 None:intergenic 30.0%
! TTTGCATTGACAGAAAAAAG+TGG - chr4_4:59067071-59067090 Msa0691130:intron 30.0%
TTATTCTGTTCTTGAGGAAA+TGG - chr4_4:59067175-59067194 Msa0691130:intron 30.0%
AGAAACAAAAAATTGGGGAA+GGG + chr4_4:59067280-59067299 None:intergenic 30.0%
AAGAAACAAAAAATTGGGGA+AGG + chr4_4:59067281-59067300 None:intergenic 30.0%
!!! TTTGTTTCTTTTTTTGTGGG+AGG - chr4_4:59067291-59067310 Msa0691130:intron 30.0%
TTAAGTTAATTGTCCAAACG+GGG + chr4_4:59067339-59067358 None:intergenic 30.0%
TAAAGAAGGAAATGTGTCAA+TGG + chr4_4:59067842-59067861 None:intergenic 30.0%
!!! CAGAAGTTGATATTTTTGAC+CGG - chr4_4:59067970-59067989 Msa0691130:five_prime_UTR 30.0%
!!! AGAAGTTGATATTTTTGACC+GGG - chr4_4:59067971-59067990 Msa0691130:five_prime_UTR 30.0%
! TTTCAATAAAGACCTTTTCC+CGG + chr4_4:59067992-59068011 None:intergenic 30.0%
!!! TTTTAGAGCCTTTAATTCGA+AGG - chr4_4:59068015-59068034 Msa0691130:five_prime_UTR 30.0%
TACAAATTTAACAGCATCCA+TGG + chr4_4:59068078-59068097 None:intergenic 30.0%
AAGAATTGAACTACTTCTTC+TGG - chr4_4:59068414-59068433 Msa0691130:intron 30.0%
CATTGAATGATTGATGTATC+TGG - chr4_4:59068472-59068491 Msa0691130:intron 30.0%
CGTTAAATAACCAATGTATC+TGG + chr4_4:59068511-59068530 None:intergenic 30.0%
TTGTTTATAATAGTGACCGA+AGG - chr4_4:59068546-59068565 Msa0691130:intron 30.0%
TGTTTATAATAGTGACCGAA+GGG - chr4_4:59068547-59068566 Msa0691130:intron 30.0%
! AATGTCTTCAGTGCATTTTA+TGG - chr4_4:59068677-59068696 Msa0691130:intron 30.0%
! AAAGTCTGAAACTCTTCAAT+AGG + chr4_4:59068767-59068786 None:intergenic 30.0%
TGAAGAGTTTCAGACTTTAT+AGG - chr4_4:59068769-59068788 Msa0691130:intron 30.0%
!! ATTCCTTTTGTCCCTTATTT+AGG - chr4_4:59068886-59068905 Msa0691130:intron 30.0%
! TCTATCACTCACTCTTTTAT+TGG - chr4_4:59069257-59069276 Msa0691130:intron 30.0%
! CTATCACTCACTCTTTTATT+GGG - chr4_4:59069258-59069277 Msa0691130:intron 30.0%
!!! TATTTTAACGAAGAGTGCTA+TGG + chr4_4:59069400-59069419 None:intergenic 30.0%
TTGGAAAATCAACCATTGAT+AGG + chr4_4:59069537-59069556 None:intergenic 30.0%
CTTTCATCAAACAAATTCAC+TGG + chr4_4:59069583-59069602 None:intergenic 30.0%
! CAGTGAATTTGTTTGATGAA+AGG - chr4_4:59069581-59069600 Msa0691130:intron 30.0%
GAAAGGAAAAAGTTACATAG+AGG - chr4_4:59069598-59069617 Msa0691130:intron 30.0%
CTAGATTAAGCTAGATTTGT+TGG + chr4_4:59069757-59069776 None:intergenic 30.0%
!!! AATCTTAATCTAGCTTTTGG+TGG - chr4_4:59069796-59069815 Msa0691130:intron 30.0%
!! GAAGCTTTTACAAGCTTTAA+TGG - chr4_4:59070109-59070128 Msa0691130:intron 30.0%
!! TAATCTTTGACTTGTTTCTG+GGG + chr4_4:59070153-59070172 None:intergenic 30.0%
ACAAGTCAAAGATTAAACTG+AGG - chr4_4:59070158-59070177 Msa0691130:intron 30.0%
ATGGGAATAATATCTCCAAA+TGG + chr4_4:59070220-59070239 None:intergenic 30.0%
TATTCAGATGTGGCATTTAT+TGG - chr4_4:59070295-59070314 Msa0691130:intron 30.0%
TTAATCTAGTTAGTTGGAGT+TGG - chr4_4:59070324-59070343 Msa0691130:intron 30.0%
ATATTATGAGTGTAACCAGT+TGG + chr4_4:59070381-59070400 None:intergenic 30.0%
CTCATAATATGCAACATTTC+GGG - chr4_4:59070391-59070410 Msa0691130:intron 30.0%
GAATTGATACATGGGGATTA+GGG + chr4_4:59064160-59064179 None:intergenic 35.0%
AGTGATGCGAATTGATACAT+GGG + chr4_4:59064168-59064187 None:intergenic 35.0%
TAGTGATGCGAATTGATACA+TGG + chr4_4:59064169-59064188 None:intergenic 35.0%
! GCTTTTACATAATCAGCTTC+TGG - chr4_4:59064192-59064211 Msa0691130:three_prime_UTR 35.0%
! TCCGTTCCTTTTTACCTTTT+AGG - chr4_4:59064264-59064283 Msa0691130:three_prime_UTR 35.0%
TATCTTCTCCCAGTTATTCT+TGG + chr4_4:59064367-59064386 None:intergenic 35.0%
CTGGGAGAAGATAGATAATT+AGG - chr4_4:59064374-59064393 Msa0691130:CDS 35.0%
GGGAGAAGATAGATAATTAG+GGG - chr4_4:59064376-59064395 Msa0691130:CDS 35.0%
CAATTCGAATTGCACTTGAT+TGG - chr4_4:59064480-59064499 Msa0691130:intron 35.0%
CTACTTGCCCATCAATTATA+AGG - chr4_4:59064635-59064654 Msa0691130:intron 35.0%
CAGGACACCTTATAATTGAT+GGG + chr4_4:59064645-59064664 None:intergenic 35.0%
ATATCTAATGCTTTACCGAC+AGG - chr4_4:59064896-59064915 Msa0691130:intron 35.0%
TCTTGAACAGAAAGTAAAGG+TGG + chr4_4:59064996-59065015 None:intergenic 35.0%
! TAATTGTTGAACGGTATTGG+TGG - chr4_4:59065034-59065053 Msa0691130:intron 35.0%
! TGATTATGGACTAACTGAAC+AGG - chr4_4:59065118-59065137 Msa0691130:intron 35.0%
! GATTATGGACTAACTGAACA+GGG - chr4_4:59065119-59065138 Msa0691130:intron 35.0%
! AAAAAATGACTCGGGTTACA+GGG + chr4_4:59065396-59065415 None:intergenic 35.0%
! AAAAAAATGACTCGGGTTAC+AGG + chr4_4:59065397-59065416 None:intergenic 35.0%
TTATAGACCACTTCTGTTGT+AGG - chr4_4:59065488-59065507 Msa0691130:intron 35.0%
!! AGTGGATTGGTTCACATATA+TGG + chr4_4:59065593-59065612 None:intergenic 35.0%
ATTGTGAAATGGTTCCAATC+TGG - chr4_4:59065664-59065683 Msa0691130:intron 35.0%
AAACCAGATTTGAACCAGAT+TGG + chr4_4:59065681-59065700 None:intergenic 35.0%
GAATAGAAAAGGGTCATTGA+GGG + chr4_4:59065834-59065853 None:intergenic 35.0%
TGGCGAAAAGGAATAGAAAA+GGG + chr4_4:59065844-59065863 None:intergenic 35.0%
ATGGCGAAAAGGAATAGAAA+AGG + chr4_4:59065845-59065864 None:intergenic 35.0%
AAGAAGAAGAATGGAAGCTA+TGG + chr4_4:59065864-59065883 None:intergenic 35.0%
ATTCTTTCTCTGTTCTGTCA+TGG - chr4_4:59065930-59065949 Msa0691130:intron 35.0%
! CACTGTTCAAACCATTGTTT+TGG + chr4_4:59065993-59066012 None:intergenic 35.0%
AGATCCAAAGTCACTGTTAT+TGG - chr4_4:59066030-59066049 Msa0691130:intron 35.0%
ACTACCAATAACAGTGACTT+TGG + chr4_4:59066037-59066056 None:intergenic 35.0%
AAAGTCACTGTTATTGGTAG+TGG - chr4_4:59066036-59066055 Msa0691130:intron 35.0%
!! CTGTTATTGGTAGTGGTAAT+TGG - chr4_4:59066043-59066062 Msa0691130:intron 35.0%
!! GTTATTGGTAGTGGTAATTG+GGG - chr4_4:59066045-59066064 Msa0691130:intron 35.0%
! ATGATGGAAATTAGGAATGG+CGG - chr4_4:59066212-59066231 Msa0691130:intron 35.0%
TGGATTTAATGAAATTGGGC+TGG - chr4_4:59066327-59066346 Msa0691130:CDS 35.0%
GGATTTAATGAAATTGGGCT+GGG - chr4_4:59066328-59066347 Msa0691130:CDS 35.0%
! CGGATTTTGTAAAACAGTTC+AGG - chr4_4:59066372-59066391 Msa0691130:intron 35.0%
TTAAATCTGACCCAGTTTAG+GGG + chr4_4:59066418-59066437 None:intergenic 35.0%
CTTAAATCTGACCCAGTTTA+GGG + chr4_4:59066419-59066438 None:intergenic 35.0%
AAAACGAGGTTAAGGAAGAA+TGG + chr4_4:59066445-59066464 None:intergenic 35.0%
! CACCCTGTTTTCGTAAAAAA+AGG - chr4_4:59066508-59066527 Msa0691130:CDS 35.0%
GTGATAGGTGGTTTCAAATT+GGG + chr4_4:59066740-59066759 None:intergenic 35.0%
AGTGATAGGTGGTTTCAAAT+TGG + chr4_4:59066741-59066760 None:intergenic 35.0%
! GGAGTGAAATTGGAAGTTTT+AGG + chr4_4:59066812-59066831 None:intergenic 35.0%
! CTTGCAAGTTGAATCTCATT+CGG + chr4_4:59066869-59066888 None:intergenic 35.0%
!!! GATGGTGTTACAGATCTTTT+TGG - chr4_4:59067146-59067165 Msa0691130:intron 35.0%
AAGCTACCTTAGAGAGATTA+TGG - chr4_4:59067447-59067466 Msa0691130:CDS 35.0%
AGTGAATCAGTATACATGAC+AGG - chr4_4:59067926-59067945 Msa0691130:CDS 35.0%
CGGTCAAAAATATCAACTTC+TGG + chr4_4:59067972-59067991 None:intergenic 35.0%
!! TGATATTTTTGACCGGGAAA+AGG - chr4_4:59067977-59067996 Msa0691130:five_prime_UTR 35.0%
TTTGTAGAGTCTTGCAAAGA+AGG - chr4_4:59068092-59068111 Msa0691130:intron 35.0%
TGCGGTACAGTACAATAAAT+TGG + chr4_4:59068151-59068170 None:intergenic 35.0%
! TCAGGATGATTTTACAACTG+CGG + chr4_4:59068169-59068188 None:intergenic 35.0%
! CTCTGAAAAGTAACATACTG+TGG + chr4_4:59068324-59068343 None:intergenic 35.0%
GCTGTGCTAATTCTTAAGTT+TGG - chr4_4:59068791-59068810 Msa0691130:intron 35.0%
TAAGGGACAAAAGGAATTCA+TGG + chr4_4:59068883-59068902 None:intergenic 35.0%
TGTCCTAAATAAGGGACAAA+AGG + chr4_4:59068892-59068911 None:intergenic 35.0%
!! TTTTGTCCCTTATTTAGGAC+AGG - chr4_4:59068891-59068910 Msa0691130:intron 35.0%
CAATAGCCTGTCCTAAATAA+GGG + chr4_4:59068900-59068919 None:intergenic 35.0%
ACAATAGCCTGTCCTAAATA+AGG + chr4_4:59068901-59068920 None:intergenic 35.0%
ATTGTTTCAGCTATCACTAG+TGG - chr4_4:59068916-59068935 Msa0691130:intron 35.0%
!! ATATGCCAAGGTTTTTGAAG+AGG - chr4_4:59069047-59069066 Msa0691130:intron 35.0%
TGTTACCTCTTCAAAAACCT+TGG + chr4_4:59069055-59069074 None:intergenic 35.0%
TTATTGGGTGAAAACCATGT+GGG + chr4_4:59069339-59069358 None:intergenic 35.0%
! TTTTCACCCAATAAGAGAGT+GGG - chr4_4:59069345-59069364 Msa0691130:intron 35.0%
CTAATACCCACTCTCTTATT+GGG + chr4_4:59069354-59069373 None:intergenic 35.0%
TCTAATACCCACTCTCTTAT+TGG + chr4_4:59069355-59069374 None:intergenic 35.0%
! TGCTTATTCTGCAAACCTTT+TGG + chr4_4:59069429-59069448 None:intergenic 35.0%
TATTCACATGCATCTCTGTT+AGG - chr4_4:59069509-59069528 Msa0691130:intron 35.0%
TAGAGAAAGCTCAAGTTTGA+GGG + chr4_4:59069634-59069653 None:intergenic 35.0%
TAATCTAGCTATTCACCAGT+TGG - chr4_4:59069677-59069696 Msa0691130:intron 35.0%
! TTTTGTTCCGACTAATAGAG+AGG - chr4_4:59069904-59069923 Msa0691130:intron 35.0%
AGAGAAACCTCTCTATTAGT+CGG + chr4_4:59069914-59069933 None:intergenic 35.0%
ACACACATCAGAGAATTGTT+AGG + chr4_4:59069942-59069961 None:intergenic 35.0%
ACTGCTTATTTGAGTATGGA+TGG - chr4_4:59069977-59069996 Msa0691130:intron 35.0%
ATGTCTTGTGAAATTGTTGC+CGG - chr4_4:59070058-59070077 Msa0691130:intron 35.0%
! TTTAATGGACCTGACTTCTA+TGG - chr4_4:59070124-59070143 Msa0691130:intron 35.0%
TTAAACTGAGGAAATCTCCT+TGG - chr4_4:59070170-59070189 Msa0691130:intron 35.0%
AAATGGAAACGATAGACACT+CGG + chr4_4:59070203-59070222 None:intergenic 35.0%
GATATTATTCCCATGTTTGC+CGG - chr4_4:59070226-59070245 Msa0691130:intron 35.0%
TAGGTTTCAGCTTAAATAGC+TGG - chr4_4:59070471-59070490 Msa0691130:five_prime_UTR 35.0%
! TTAGAGGGTACGACCTAATT+TGG + chr4_4:59063903-59063922 None:intergenic 40.0%
AAGTCTTAGCATCTGCTACT+TGG + chr4_4:59064104-59064123 None:intergenic 40.0%
CGAATTGATACATGGGGATT+AGG + chr4_4:59064161-59064180 None:intergenic 40.0%
GTGATGCGAATTGATACATG+GGG + chr4_4:59064167-59064186 None:intergenic 40.0%
GCAGGACACCTTATAATTGA+TGG + chr4_4:59064646-59064665 None:intergenic 40.0%
GGAACACACATAGATCATCT+TGG + chr4_4:59064975-59064994 None:intergenic 40.0%
TGGGTTCAAGACTTTCTTTC+TGG - chr4_4:59065282-59065301 Msa0691130:intron 40.0%
TGTTCGTTTGCAATACCTGT+TGG - chr4_4:59065512-59065531 Msa0691130:CDS 40.0%
GTTCGTTTGCAATACCTGTT+GGG - chr4_4:59065513-59065532 Msa0691130:CDS 40.0%
TTCGTTTGCAATACCTGTTG+GGG - chr4_4:59065514-59065533 Msa0691130:CDS 40.0%
! AGTTAACCACACAAAAGCGT+AGG + chr4_4:59065546-59065565 None:intergenic 40.0%
! TACGCTTTTGTGTGGTTAAC+TGG - chr4_4:59065545-59065564 Msa0691130:CDS 40.0%
! ACGCTTTTGTGTGGTTAACT+GGG - chr4_4:59065546-59065565 Msa0691130:CDS 40.0%
! GTTCCAATCTGGTTCAAATC+TGG - chr4_4:59065675-59065694 Msa0691130:intron 40.0%
GGAATAGAAAAGGGTCATTG+AGG + chr4_4:59065835-59065854 None:intergenic 40.0%
GAAATTGCGTCCCAAAACAA+TGG - chr4_4:59065979-59065998 Msa0691130:intron 40.0%
CGACTGCAATTGGAGAAATT+AGG - chr4_4:59066266-59066285 Msa0691130:CDS 40.0%
! TTTAATGAAATTGGGCTGGG+TGG - chr4_4:59066331-59066350 Msa0691130:CDS 40.0%
! TTAATGAAATTGGGCTGGGT+GGG - chr4_4:59066332-59066351 Msa0691130:CDS 40.0%
TTAGGGGTCTGCAAAAAAAC+TGG + chr4_4:59066402-59066421 None:intergenic 40.0%
!!! TTTTTTGCAGACCCCTAAAC+TGG - chr4_4:59066404-59066423 Msa0691130:intron 40.0%
! TTTTTGCAGACCCCTAAACT+GGG - chr4_4:59066405-59066424 Msa0691130:intron 40.0%
GCTTAAATCTGACCCAGTTT+AGG + chr4_4:59066420-59066439 None:intergenic 40.0%
TATATAGTGTGTGCTGCAGA+GGG - chr4_4:59066474-59066493 Msa0691130:CDS 40.0%
AACAGCAGAGACAGAAAGAA+TGG - chr4_4:59066604-59066623 Msa0691130:CDS 40.0%
TTTCATCTTCATCTTCGCGA+CGG - chr4_4:59066653-59066672 Msa0691130:intron 40.0%
AAAATGCTTTGCACTGTGAG+GGG + chr4_4:59066699-59066718 None:intergenic 40.0%
CAAAATGCTTTGCACTGTGA+GGG + chr4_4:59066700-59066719 None:intergenic 40.0%
!! ACAGTGCAAAGCATTTTGGA+AGG - chr4_4:59066702-59066721 Msa0691130:intron 40.0%
!! CAGTGCAAAGCATTTTGGAA+GGG - chr4_4:59066703-59066722 Msa0691130:intron 40.0%
TGTCATGAGAGGAGTGAAAT+TGG + chr4_4:59066822-59066841 None:intergenic 40.0%
! GTGAGATAAAGTGTCATGAG+AGG + chr4_4:59066833-59066852 None:intergenic 40.0%
GCTACAACAAACTCACAAGA+TGG - chr4_4:59067128-59067147 Msa0691130:intron 40.0%
TGAGCAAGGTTTGCCATTAT+TGG - chr4_4:59067199-59067218 Msa0691130:intron 40.0%
!! TAATGTTCTAAAGCCCCGTT+TGG - chr4_4:59067323-59067342 Msa0691130:intron 40.0%
GAGCTTATGAGAACAGCTTA+TGG + chr4_4:59067502-59067521 None:intergenic 40.0%
ATAGTTGACAATGAGCCAAG+TGG - chr4_4:59067792-59067811 Msa0691130:CDS 40.0%
CAGTATACATGACAGGTTCA+CGG - chr4_4:59067933-59067952 Msa0691130:CDS 40.0%
TCCATCACAACCTTCAATTG+CGG + chr4_4:59068044-59068063 None:intergenic 40.0%
GATGGAGCATATTACTACCA+TGG - chr4_4:59068058-59068077 Msa0691130:five_prime_UTR 40.0%
CGATTGAGAAGAATATGCTG+AGG + chr4_4:59068235-59068254 None:intergenic 40.0%
! AATCGCAATGCTTTGTTCCA+AGG - chr4_4:59068250-59068269 Msa0691130:intron 40.0%
! TGGATCTCTCTTTTAAGCAC+GGG + chr4_4:59068304-59068323 None:intergenic 40.0%
! GTGGATCTCTCTTTTAAGCA+CGG + chr4_4:59068305-59068324 None:intergenic 40.0%
! TGATCTGACTTGCATGATGA+AGG - chr4_4:59068649-59068668 Msa0691130:intron 40.0%
TTAGACAAAACCGCATCTCT+TGG - chr4_4:59068849-59068868 Msa0691130:intron 40.0%
GGTTAGATAACCAAGAGATG+CGG + chr4_4:59068862-59068881 None:intergenic 40.0%
! GGAAGTAGACGATTTTTCCT+TGG - chr4_4:59068937-59068956 Msa0691130:intron 40.0%
TCCACATGATAGGCGTAAAA+AGG - chr4_4:59068972-59068991 Msa0691130:intron 40.0%
! TCCTTTTTACGCCTATCATG+TGG + chr4_4:59068976-59068995 None:intergenic 40.0%
CGTAAAAAGGAATCTGCTTG+TGG - chr4_4:59068985-59069004 Msa0691130:intron 40.0%
ATATAGTGATAGAGCAACCG+GGG + chr4_4:59069031-59069050 None:intergenic 40.0%
CATATAGTGATAGAGCAACC+GGG + chr4_4:59069032-59069051 None:intergenic 40.0%
GCATATAGTGATAGAGCAAC+CGG + chr4_4:59069033-59069052 None:intergenic 40.0%
TGCTCTATCACTATATGCCA+AGG - chr4_4:59069035-59069054 Msa0691130:intron 40.0%
TCACAAATGTGCATATGGGT+AGG - chr4_4:59069130-59069149 Msa0691130:intron 40.0%
! TCACTCACTCTTTTATTGGG+TGG - chr4_4:59069261-59069280 Msa0691130:intron 40.0%
TAAAGTGGTGAGATCCACAT+GGG + chr4_4:59069289-59069308 None:intergenic 40.0%
ATAAAGTGGTGAGATCCACA+TGG + chr4_4:59069290-59069309 None:intergenic 40.0%
TGGATCTCACCACTTTATGT+GGG - chr4_4:59069292-59069311 Msa0691130:intron 40.0%
CTTATTGGGTGAAAACCATG+TGG + chr4_4:59069340-59069359 None:intergenic 40.0%
! GTTTTCACCCAATAAGAGAG+TGG - chr4_4:59069344-59069363 Msa0691130:intron 40.0%
CTCTGTTAGGAACCTATCAA+TGG - chr4_4:59069522-59069541 Msa0691130:intron 40.0%
AGAGAAAGCTCAAGTTTGAG+GGG + chr4_4:59069633-59069652 None:intergenic 40.0%
CTAGAGAAAGCTCAAGTTTG+AGG + chr4_4:59069635-59069654 None:intergenic 40.0%
AGTTCACTGAACTGTTATGG+CGG + chr4_4:59069875-59069894 None:intergenic 40.0%
ACCAGTTCACTGAACTGTTA+TGG + chr4_4:59069878-59069897 None:intergenic 40.0%
TGAAATTGTTGCCGGTGTTT+AGG - chr4_4:59070066-59070085 Msa0691130:intron 40.0%
AATGGAAACGATAGACACTC+GGG + chr4_4:59070202-59070221 None:intergenic 40.0%
GAGTGTCTATCGTTTCCATT+TGG - chr4_4:59070202-59070221 Msa0691130:intron 40.0%
TTCCCATTCAAGTGTTTCAC+CGG + chr4_4:59070248-59070267 None:intergenic 40.0%
!! GGAAGCATTGCTTATTTGAC+TGG - chr4_4:59070264-59070283 Msa0691130:intron 40.0%
! TTAGTTGGAGTTGGTTACCT+TGG - chr4_4:59070333-59070352 Msa0691130:intron 40.0%
GGGCATTCAGAAATATGATC+AGG - chr4_4:59070516-59070535 Msa0691130:five_prime_UTR 40.0%
! TCTGCTACTTGGAAGAAGGA+TGG + chr4_4:59064093-59064112 None:intergenic 45.0%
! AGCATCTGCTACTTGGAAGA+AGG + chr4_4:59064097-59064116 None:intergenic 45.0%
TGATACATGGGGATTAGGGA+GGG + chr4_4:59064156-59064175 None:intergenic 45.0%
TTGATACATGGGGATTAGGG+AGG + chr4_4:59064157-59064176 None:intergenic 45.0%
!!! ATCAGCTTCTGGTTTTCGCT+AGG - chr4_4:59064203-59064222 Msa0691130:three_prime_UTR 45.0%
! TTTTCGCTAGGTTGTGCTTG+TGG - chr4_4:59064215-59064234 Msa0691130:three_prime_UTR 45.0%
! TAGGGGCATATAGGCAGAAT+TGG - chr4_4:59064393-59064412 Msa0691130:CDS 45.0%
GAAATTGTGAGGTTCAGCTC+CGG - chr4_4:59064856-59064875 Msa0691130:intron 45.0%
CGAACAACCTACAACAGAAG+TGG + chr4_4:59065498-59065517 None:intergenic 45.0%
! CTGATTCCTACGCTTTTGTG+TGG - chr4_4:59065537-59065556 Msa0691130:CDS 45.0%
TGTGTGGTTAACTGGGACTA+AGG - chr4_4:59065553-59065572 Msa0691130:CDS 45.0%
GTGTGGTTAACTGGGACTAA+GGG - chr4_4:59065554-59065573 Msa0691130:CDS 45.0%
GGAGAAGACAGTCACAAGTT+TGG + chr4_4:59065810-59065829 None:intergenic 45.0%
TAGAAAAGGGTCATTGAGGG+TGG + chr4_4:59065831-59065850 None:intergenic 45.0%
GAATGGAAGCTATGGCGAAA+AGG + chr4_4:59065856-59065875 None:intergenic 45.0%
ACGAGGTTAAGGAAGAATGG+AGG + chr4_4:59066442-59066461 None:intergenic 45.0%
CTATATAGTGTGTGCTGCAG+AGG - chr4_4:59066473-59066492 Msa0691130:CDS 45.0%
CCAAAATGCTTTGCACTGTG+AGG + chr4_4:59066701-59066720 None:intergenic 45.0%
!! CCTCACAGTGCAAAGCATTT+TGG - chr4_4:59066698-59066717 Msa0691130:intron 45.0%
! GAAGATGTGGTAGTGATAGG+TGG + chr4_4:59066752-59066771 None:intergenic 45.0%
! GCAGAAGATGTGGTAGTGAT+AGG + chr4_4:59066755-59066774 None:intergenic 45.0%
CTTGAGGAAATGGTTGAGCA+AGG - chr4_4:59067185-59067204 Msa0691130:intron 45.0%
AATGAGCCAAGTGGTTCCTA+TGG - chr4_4:59067801-59067820 Msa0691130:CDS 45.0%
ATGTGTCAATGGACCACACT+TGG + chr4_4:59067831-59067850 None:intergenic 45.0%
TGCGGAAGCCTTCGAATTAA+AGG + chr4_4:59068026-59068045 None:intergenic 45.0%
TCCGCAATTGAAGGTTGTGA+TGG - chr4_4:59068040-59068059 Msa0691130:five_prime_UTR 45.0%
ACGGGAAGACAGTAATTGTG+AGG + chr4_4:59068286-59068305 None:intergenic 45.0%
! CTGATAGTGCTCCACATGAT+AGG - chr4_4:59068962-59068981 Msa0691130:intron 45.0%
TGCATATGGGTAGGTTTCAG+AGG - chr4_4:59069139-59069158 Msa0691130:intron 45.0%
GCATATGGGTAGGTTTCAGA+GGG - chr4_4:59069140-59069159 Msa0691130:intron 45.0%
TTTATTGGGTGGAACCCATG+TGG - chr4_4:59069272-59069291 Msa0691130:intron 45.0%
GTGGATCTCACCACTTTATG+TGG - chr4_4:59069291-59069310 Msa0691130:intron 45.0%
GAAATGGCTCCCACATAAAG+TGG + chr4_4:59069304-59069323 None:intergenic 45.0%
! TGGGTCTCACACTTTGGAAA+TGG + chr4_4:59069320-59069339 None:intergenic 45.0%
! GGTGAATAGCTTGTACCAAC+TGG + chr4_4:59069695-59069714 None:intergenic 45.0%
GGTACAAGCTATTCACCAGT+TGG - chr4_4:59069698-59069717 Msa0691130:intron 45.0%
! CAGTTCAGTCTTGTACCAAC+TGG + chr4_4:59069716-59069735 None:intergenic 45.0%
GGTACAAGACTGAACTGAAC+TGG - chr4_4:59069719-59069738 Msa0691130:intron 45.0%
!! CTAGCTTTTGGTGGAATCCT+TGG - chr4_4:59069805-59069824 Msa0691130:intron 45.0%
TTCAGTTCAGTCTTGAGCCA+AGG + chr4_4:59069825-59069844 None:intergenic 45.0%
!! ACTGTTATGGCGGTTTGGTT+TGG + chr4_4:59069865-59069884 None:intergenic 45.0%
ACTGAACTGTTATGGCGGTT+TGG + chr4_4:59069870-59069889 None:intergenic 45.0%
GCCATAACAGTTCAGTGAAC+TGG - chr4_4:59069874-59069893 Msa0691130:intron 45.0%
AGTGTTTCACCGGCAAACAT+GGG + chr4_4:59070238-59070257 None:intergenic 45.0%
AAGTGTTTCACCGGCAAACA+TGG + chr4_4:59070239-59070258 None:intergenic 45.0%
TTGCCGGTGAAACACTTGAA+TGG - chr4_4:59070242-59070261 Msa0691130:intron 45.0%
TGCCGGTGAAACACTTGAAT+GGG - chr4_4:59070243-59070262 Msa0691130:intron 45.0%
! ACCTGATAGCTTGTACCAAC+TGG - chr4_4:59070363-59070382 Msa0691130:intron 45.0%
! ACCAGTTGGTACAAGCTATC+AGG + chr4_4:59070367-59070386 None:intergenic 45.0%
TTTCGGGCGTATCAGAAATG+CGG - chr4_4:59070407-59070426 Msa0691130:intron 45.0%
!! AAAATTAAATTAAAATTTGA+GGG + chr4_4:59066927-59066946 None:intergenic 5.0%
!! AAAAATTAAATTAAAATTTG+AGG + chr4_4:59066928-59066947 None:intergenic 5.0%
TCATACGCCTCAGCTGTTAC+CGG - chr4_4:59064057-59064076 Msa0691130:three_prime_UTR 50.0%
GAAGGATGGCTTCGAAGATC+CGG + chr4_4:59064079-59064098 None:intergenic 50.0%
GCAGTAGTTCGAGACTCACA+GGG + chr4_4:59064133-59064152 None:intergenic 50.0%
GATACATGGGGATTAGGGAG+GGG + chr4_4:59064155-59064174 None:intergenic 50.0%
TTCTGTCATGGCTCCAGCAT+TGG - chr4_4:59065942-59065961 Msa0691130:intron 50.0%
! GCTCCAGCATTGGAAATCCA+AGG - chr4_4:59065952-59065971 Msa0691130:intron 50.0%
CCTCCTTGGATTTCCAATGC+TGG + chr4_4:59065958-59065977 None:intergenic 50.0%
! CCAGCATTGGAAATCCAAGG+AGG - chr4_4:59065955-59065974 Msa0691130:intron 50.0%
! GGGCTTCAAGTTAGGTTCAC+CGG - chr4_4:59066352-59066371 Msa0691130:intron 50.0%
!! TTACGAAAACAGGGTGCCGA+TGG + chr4_4:59066504-59066523 None:intergenic 50.0%
GGCAGTTGAAGCTTCTCTGT+CGG + chr4_4:59066575-59066594 None:intergenic 50.0%
!! GTCTCTGCTGTTGCTTTCGA+CGG + chr4_4:59066596-59066615 None:intergenic 50.0%
GGTGTGAAGTTGTATCCTGC+TGG - chr4_4:59067104-59067123 Msa0691130:intron 50.0%
!! GAGTTTGTTGTAGCTCCAGC+AGG + chr4_4:59067122-59067141 None:intergenic 50.0%
TTCCTATGGCAAGCCAAGTG+TGG - chr4_4:59067815-59067834 Msa0691130:CDS 50.0%
TACATGACAGGTTCACGGAG+AGG - chr4_4:59067938-59067957 Msa0691130:exon 50.0%
TCGAAGGCTTCCGCAATTGA+AGG - chr4_4:59068031-59068050 Msa0691130:five_prime_UTR 50.0%
! CGCAATGCTTTGTTCCAAGG+TGG - chr4_4:59068253-59068272 Msa0691130:intron 50.0%
! GTGGAGCACTATCAGTTCCA+AGG + chr4_4:59068957-59068976 None:intergenic 50.0%
GAATCTGCTTGTGGATGTGC+TGG - chr4_4:59068994-59069013 Msa0691130:intron 50.0%
TCCAAAGTGTGAGACCCACA+TGG - chr4_4:59069322-59069341 Msa0691130:intron 50.0%
ACCATGTGGGTCTCACACTT+TGG + chr4_4:59069326-59069345 None:intergenic 50.0%
ATTGTTGCCGGTGTTTAGGC+TGG - chr4_4:59070070-59070089 Msa0691130:intron 50.0%
AAGTGCACCAGCCTAAACAC+CGG + chr4_4:59070080-59070099 None:intergenic 50.0%
CTGGGGATACCATAGAAGTC+AGG + chr4_4:59070136-59070155 None:intergenic 50.0%
GGTCTCTGCGTATTCAGATG+TGG - chr4_4:59070285-59070304 Msa0691130:intron 50.0%
GCTATCAGGTTCTGTCACCA+AGG + chr4_4:59070353-59070372 None:intergenic 50.0%
TTCGGGCGTATCAGAAATGC+GGG - chr4_4:59070408-59070427 Msa0691130:intron 50.0%
CGAAGATCCGGTAACAGCTG+AGG + chr4_4:59064067-59064086 None:intergenic 55.0%
GGCAGTAGTTCGAGACTCAC+AGG + chr4_4:59064134-59064153 None:intergenic 55.0%
!! ACTGGGACTAAGGGTGTTCG+TGG - chr4_4:59065563-59065582 Msa0691130:CDS 55.0%
GGGACGCAATTTCTCCTCCT+TGG + chr4_4:59065972-59065991 None:intergenic 55.0%
TGCAGTCGCGACTCAACGTA+TGG + chr4_4:59066254-59066273 None:intergenic 55.0%
CGTTGAGTCGCGACTGCAAT+TGG - chr4_4:59066256-59066275 Msa0691130:CDS 55.0%
TGCTGCAGAGGGTTCACCAT+CGG - chr4_4:59066485-59066504 Msa0691130:CDS 55.0%
CAACGCTGCAGAGTTGAGCA+AGG - chr4_4:59066549-59066568 Msa0691130:CDS 55.0%
GGCTTGCCATAGGAACCACT+TGG + chr4_4:59067810-59067829 None:intergenic 55.0%
!! GACCACACTTGGCTTGCCAT+AGG + chr4_4:59067820-59067839 None:intergenic 55.0%
TGCTGGCATCTACAACTCCC+CGG - chr4_4:59069011-59069030 Msa0691130:intron 55.0%
AGACACTCGGGTACTCTCCA+AGG + chr4_4:59070190-59070209 None:intergenic 55.0%
GGTGCAGTTGCTGCAGCTCA+AGG - chr4_4:59065243-59065262 Msa0691130:intron 60.0%
GCGTAGGAATCAGCCCCAAC+AGG + chr4_4:59065530-59065549 None:intergenic 60.0%
! GGCTGGGTGGGCTTCAAGTT+AGG - chr4_4:59066344-59066363 Msa0691130:CDS 60.0%
TGTGAGGCTGCAAGCCACCT+TGG + chr4_4:59068270-59068289 None:intergenic 60.0%
GGCTGGTGCACTTGACAAGC+TGG - chr4_4:59070087-59070106 Msa0691130:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 59063880 59070698 59063880 ID=Msa0691130;Name=Msa0691130
chr4_4 mRNA 59063880 59070698 59063880 ID=Msa0691130-mRNA-1;Parent=Msa0691130;Name=Msa0691130-mRNA-1;_AED=0.28;_eAED=0.28;_QI=396|1|1|1|0.83|0.71|7|416|346
chr4_4 exon 59063880 59064490 59063880 ID=Msa0691130-mRNA-1:exon:16000;Parent=Msa0691130-mRNA-1
chr4_4 exon 59065510 59065670 59065510 ID=Msa0691130-mRNA-1:exon:15999;Parent=Msa0691130-mRNA-1
chr4_4 exon 59066253 59066369 59066253 ID=Msa0691130-mRNA-1:exon:15998;Parent=Msa0691130-mRNA-1
chr4_4 exon 59066465 59066630 59066465 ID=Msa0691130-mRNA-1:exon:15997;Parent=Msa0691130-mRNA-1
chr4_4 exon 59067358 59067494 59067358 ID=Msa0691130-mRNA-1:exon:15996;Parent=Msa0691130-mRNA-1
chr4_4 exon 59067691 59068097 59067691 ID=Msa0691130-mRNA-1:exon:15995;Parent=Msa0691130-mRNA-1
chr4_4 exon 59070445 59070698 59070445 ID=Msa0691130-mRNA-1:exon:15994;Parent=Msa0691130-mRNA-1
chr4_4 five_prime_UTR 59070445 59070698 59070445 ID=Msa0691130-mRNA-1:five_prime_utr;Parent=Msa0691130-mRNA-1
chr4_4 five_prime_UTR 59067956 59068097 59067956 ID=Msa0691130-mRNA-1:five_prime_utr;Parent=Msa0691130-mRNA-1
chr4_4 CDS 59067691 59067955 59067691 ID=Msa0691130-mRNA-1:cds;Parent=Msa0691130-mRNA-1
chr4_4 CDS 59067358 59067494 59067358 ID=Msa0691130-mRNA-1:cds;Parent=Msa0691130-mRNA-1
chr4_4 CDS 59066465 59066630 59066465 ID=Msa0691130-mRNA-1:cds;Parent=Msa0691130-mRNA-1
chr4_4 CDS 59066253 59066369 59066253 ID=Msa0691130-mRNA-1:cds;Parent=Msa0691130-mRNA-1
chr4_4 CDS 59065510 59065670 59065510 ID=Msa0691130-mRNA-1:cds;Parent=Msa0691130-mRNA-1
chr4_4 CDS 59064296 59064490 59064296 ID=Msa0691130-mRNA-1:cds;Parent=Msa0691130-mRNA-1
chr4_4 three_prime_UTR 59063880 59064295 59063880 ID=Msa0691130-mRNA-1:three_prime_utr;Parent=Msa0691130-mRNA-1
Gene Sequence

>Msa0691130

ATGGAGCTAACAATTGCACAACCTGATGATTTTCATCTTCATCTTCGCGACGGTGCTCTTCTTGAAGCTGTAACCCCTCACAGTGCAAAGCATTTTGGAAGGGCTATTATCATGCCCAATTTGAAACCACCTATCACTACCACATCTTCTGCTATTTCTTATCGAGAATCTATTTTGAAAGCAATACCTAAAACTTCCAATTTCACTCCTCTCATGACACTTTATCTCACTGATGCTACAACTCCGAATGAGATTCAACTTGCAAAAAAAAGTGGATTTGTTTATGGTGTGAAGTTGTATCCTGCTGGAGCTACAACAAACTCACAAGATGGTGTTACAGATCTTTTTGGAAATTGTTATTCTGTTCTTGAGGAAATGGTTGAGCAAGGTTTGCCATTATTGGTTCACGGAGAGGTTACAAATCCAGAAGTTGATATTTTTGACCGGGAAAAGGTCTTTATTGAAACAATTTTAGAGCCTTTAATTCGAAGGCTTCCGCAATTGAAGGTTGTGATGGAGCATATTACTACCATGGATGCTGTTAAATTTGTAGAGTCTTGCAAAGAAGGTTATGTAGCAGCAACAGTTACACCTCAGCATATTCTTCTCAATCGCAATGCTTTGTTCCAAGGTGGCTTGCAGCCTCACAATTACTGTCTTCCCGTGCTTAAAAGAGAGATCCACAGACAGGCTATTGTTTCAGCTATCACTAGTGGAAGTAGACGATTTTTCCTTGGAACTGATAGTGCTCCACATGATAGGCGTAAAAAGGAATCTGCTTGTGGATGTGCTGGCATCTACAACTCCCCGGTTGCTCTATCACTATATGCCAAGGTTTTTGAAGAGGCTGGTGCACTTGACAAGCTGGAAGCTTTTACAAGCTTTAATGGACCTGACTTCTATGGTATCCCCAGAAACAAGTCAAAGATTAAACTGAGGAAATCTCCTTGGAGAGTACCCGAGTGTCTATCGTTTCCATTTGGAGATATTATTCCCATGTTTGCCGGTGAAACACTTGAATGGGAAGCATTGCTTATTTGA
Protein sequence

>Msa0691130

MELTIAQPDDFHLHLRDGALLEAVTPHSAKHFGRAIIMPNLKPPITTTSSAISYRESILKAIPKTSNFTPLMTLYLTDATTPNEIQLAKKSGFVYGVKLYPAGATTNSQDGVTDLFGNCYSVLEEMVEQGLPLLVHGEVTNPEVDIFDREKVFIETILEPLIRRLPQLKVVMEHITTMDAVKFVESCKEGYVAATVTPQHILLNRNALFQGGLQPHNYCLPVLKREIHRQAIVSAITSGSRRFFLGTDSAPHDRRKKESACGCAGIYNSPVALSLYAKVFEEAGALDKLEAFTSFNGPDFYGIPRNKSKIKLRKSPWRVPECLSFPFGDIIPMFAGETLEWEALLI*