Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0541580 | XP_024629043.1 | 94.290 | 648 | 34 | 1 | 1 | 648 | 1 | 645 | 0.0 | 1211 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0541580 | A0A396GPD9 | 94.290 | 648 | 34 | 1 | 1 | 648 | 1 | 645 | 0.0 | 1211 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa0541580 | 0.820303 | 7.365061e-53 | -8.615850e-47 |
| Msa0027320 | Msa0541580 | 0.800183 | 1.623897e-48 | -8.615850e-47 |
| Msa0105070 | Msa0541580 | 0.804418 | 2.181367e-49 | -8.615850e-47 |
| Msa0109900 | Msa0541580 | 0.801693 | 7.980975e-49 | -8.615850e-47 |
| Msa0225750 | Msa0541580 | 0.801906 | 7.217024e-49 | -8.615850e-47 |
| Msa0388960 | Msa0541580 | 0.818175 | 2.248531e-52 | -8.615850e-47 |
| Msa0417880 | Msa0541580 | 0.808685 | 2.743305e-50 | -8.615850e-47 |
| Msa0426640 | Msa0541580 | 0.804955 | 1.684480e-49 | -8.615850e-47 |
| Msa0428590 | Msa0541580 | 0.800009 | 1.761866e-48 | -8.615850e-47 |
| Msa0244860 | Msa0541580 | 0.802233 | 6.183775e-49 | -8.615850e-47 |
| Msa0244940 | Msa0541580 | 0.800385 | 1.477318e-48 | -8.615850e-47 |
| Msa0245940 | Msa0541580 | 0.813259 | 2.802069e-51 | -8.615850e-47 |
| Msa0248970 | Msa0541580 | 0.802792 | 4.741879e-49 | -8.615850e-47 |
| Msa0283450 | Msa0541580 | 0.812774 | 3.579707e-51 | -8.615850e-47 |
| Msa0284520 | Msa0541580 | 0.823694 | 1.206877e-53 | -8.615850e-47 |
| Msa0541580 | Msa0569200 | 0.811635 | 6.343631e-51 | -8.615850e-47 |
| Msa0541580 | Msa0570760 | 0.800377 | 1.482800e-48 | -8.615850e-47 |
| Msa0541580 | Msa0571130 | 0.800673 | 1.290505e-48 | -8.615850e-47 |
| Msa0541580 | Msa0576880 | 0.801136 | 1.038363e-48 | -8.615850e-47 |
| Msa0541580 | Msa0648310 | 0.846660 | 1.889252e-59 | -8.615850e-47 |
| Msa0541580 | Msa0681250 | 0.801285 | 9.675718e-49 | -8.615850e-47 |
| Msa0541580 | Msa0681270 | 0.813180 | 2.916733e-51 | -8.615850e-47 |
| Msa0541580 | Msa0685750 | 0.800684 | 1.284259e-48 | -8.615850e-47 |
| Msa0541580 | Msa0691130 | 0.830787 | 2.412351e-55 | -8.615850e-47 |
| Msa0541580 | Msa0704600 | 0.825789 | 3.869428e-54 | -8.615850e-47 |
| Msa0541580 | Msa0749290 | 0.807697 | 4.452922e-50 | -8.615850e-47 |
| Msa0541580 | Msa0828850 | 0.801051 | 1.080447e-48 | -8.615850e-47 |
| Msa0541580 | Msa0896750 | 0.810947 | 8.945574e-51 | -8.615850e-47 |
| Msa0541580 | Msa1021210 | 0.804667 | 1.935143e-49 | -8.615850e-47 |
| Msa0541580 | Msa1081330 | 0.809415 | 1.913608e-50 | -8.615850e-47 |
| Msa0541580 | Msa1300490 | 0.823082 | 1.677705e-53 | -8.615850e-47 |
| Msa0541580 | Msa1313150 | 0.817115 | 3.897953e-52 | -8.615850e-47 |
| Msa0541580 | Msa1409870 | 0.809418 | 1.911376e-50 | -8.615850e-47 |
| Msa0541580 | Msa1415910 | 0.802278 | 6.052756e-49 | -8.615850e-47 |
| Msa0541580 | Msa1423880 | 0.813103 | 3.032171e-51 | -8.615850e-47 |
| Msa0541580 | Msa1445690 | 0.830289 | 3.192816e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0541580 | MtrunA17_Chr8g0382781 | 94.290 | 648 | 34 | 1 | 1 | 648 | 1 | 645 | 0.0 | 1211 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0541580 | AT4G39690.1 | 46.188 | 682 | 301 | 16 | 1 | 648 | 1 | 650 | 3.41e-170 | 501 |
Find 175 sgRNAs with CRISPR-Local
Find 375 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATCTTCTATTGCAATTTC+TGG | 0.160731 | 4_1:+25561937 | None:intergenic |
| TAAAGGTTGGAGAGATTATT+TGG | 0.198109 | 4_1:-25557398 | Msa0541580:three_prime_UTR |
| CTTCTGGCAGCTTATCAATT+TGG | 0.199243 | 4_1:-25562153 | Msa0541580:CDS |
| TACCTGATTACTAAAATATC+TGG | 0.207845 | 4_1:+25562758 | None:intergenic |
| AAAATGTTGCATTGTTAGTA+TGG | 0.218900 | 4_1:-25557206 | Msa0541580:three_prime_UTR |
| TTGAGGTTAGCTTGTAAGTT+TGG | 0.235219 | 4_1:-25563086 | Msa0541580:five_prime_UTR |
| TTGCAGTTTGATATCATAAA+AGG | 0.246440 | 4_1:-25557990 | Msa0541580:intron |
| TCCTCTATTTCTTGTTGCTT+TGG | 0.247067 | 4_1:+25561643 | None:intergenic |
| AGGTATGTTGGCACATTCTT+TGG | 0.248795 | 4_1:-25557928 | Msa0541580:CDS |
| TGAGGTTAGCTTGTAAGTTT+GGG | 0.256275 | 4_1:-25563085 | Msa0541580:five_prime_UTR |
| AGATGGTACCGTTGGAGATT+TGG | 0.284453 | 4_1:-25562073 | Msa0541580:CDS |
| TGGTGTAAGTGCTGTTCTTC+TGG | 0.285174 | 4_1:-25562169 | Msa0541580:CDS |
| TTCAGCAAGCATTAGTTCTT+TGG | 0.294038 | 4_1:+25560870 | None:intergenic |
| TCGAGATGAAAATTGCAAAA+TGG | 0.304461 | 4_1:+25562803 | None:intergenic |
| TAGACTACTTTGAGGATATT+CGG | 0.312849 | 4_1:+25561834 | None:intergenic |
| AAATAATCTCTCCAACCTTT+AGG | 0.317282 | 4_1:+25557400 | None:intergenic |
| GATTCTAATTCTGTCTGAAT+TGG | 0.329621 | 4_1:+25558556 | None:intergenic |
| ACACCACTGGCTTCGGTGAT+TGG | 0.336504 | 4_1:-25557276 | Msa0541580:three_prime_UTR |
| TAAAGATTCAGTGTTGGATT+TGG | 0.347043 | 4_1:-25558506 | Msa0541580:CDS |
| TACCATCTATCTGAGCTTCT+TGG | 0.353644 | 4_1:+25562088 | None:intergenic |
| ATCTTGAACTATTATTTGTA+TGG | 0.354720 | 4_1:+25557111 | None:intergenic |
| TCGGAAGGAACCGCTCCTAT+TGG | 0.355581 | 4_1:-25561328 | Msa0541580:CDS |
| ATATCTGGGGTTTGTTCTAA+AGG | 0.357154 | 4_1:+25562773 | None:intergenic |
| TTCAGGAAAATGACTGTTCT+CGG | 0.358853 | 4_1:+25561300 | None:intergenic |
| GGCGGCTTTCCTGTAGAATA+AGG | 0.365184 | 4_1:+25562237 | None:intergenic |
| GGGTGAAGCAAGCAAGAAAC+AGG | 0.371190 | 4_1:-25557530 | Msa0541580:CDS |
| TTTGAGGATATTCGGGAAAC+TGG | 0.371372 | 4_1:+25561842 | None:intergenic |
| TCATGTAAGGCTAATGGAAT+TGG | 0.371977 | 4_1:+25557467 | None:intergenic |
| ACCATCTATCTGAGCTTCTT+GGG | 0.372192 | 4_1:+25562089 | None:intergenic |
| GTATGTTGAATTGCCTCTTC+CGG | 0.378673 | 4_1:+25561724 | None:intergenic |
| TGATAATCATGTAAGGCTAA+TGG | 0.381766 | 4_1:+25557461 | None:intergenic |
| AGACTACTTTGAGGATATTC+GGG | 0.386103 | 4_1:+25561835 | None:intergenic |
| GCAACTCCCGTTGGCATCCT+TGG | 0.390015 | 4_1:+25557370 | None:intergenic |
| CTGTTCTCGGTAAGCCCAAT+AGG | 0.392777 | 4_1:+25561313 | None:intergenic |
| TGCAACAATTTCTGCAGCTT+GGG | 0.397283 | 4_1:+25557557 | None:intergenic |
| GTCTTGGTCGCCTGTGGCCG+CGG | 0.397350 | 4_1:+25557166 | None:intergenic |
| TCTTTGCAGTCTTATCTTGA+AGG | 0.406723 | 4_1:-25558535 | Msa0541580:CDS |
| TGAAGAGAAGAAAGCATTGA+AGG | 0.409657 | 4_1:-25561039 | Msa0541580:intron |
| AACAAGAAATAGAGGAAAGA+AGG | 0.410076 | 4_1:-25561636 | Msa0541580:CDS |
| CAAGCTGCAGAAATTGTTGC+AGG | 0.410146 | 4_1:-25557555 | Msa0541580:CDS |
| TTGAAACACTAGGCATTTAG+TGG | 0.411190 | 4_1:-25561182 | Msa0541580:intron |
| CCCCAAGAAGCTCAGATAGA+TGG | 0.411326 | 4_1:-25562090 | Msa0541580:CDS |
| CGGAAGGAACCGCTCCTATT+GGG | 0.416133 | 4_1:-25561327 | Msa0541580:CDS |
| TGCAGAAATTGTTGCAGGTT+GGG | 0.419821 | 4_1:-25557550 | Msa0541580:CDS |
| CAAAATTTGATAATCATGTA+AGG | 0.424894 | 4_1:+25557454 | None:intergenic |
| CCATCCATGCTGCGGAGAAA+AGG | 0.435414 | 4_1:-25561091 | Msa0541580:CDS |
| CTGTATAACACCACTGGCTT+CGG | 0.439828 | 4_1:-25557283 | Msa0541580:three_prime_UTR |
| TCTCCGACTCTACCATGTTC+CGG | 0.440000 | 4_1:-25562991 | Msa0541580:exon |
| GGCTGCCTTCTCCTTTGCTA+TGG | 0.440609 | 4_1:+25560136 | None:intergenic |
| TGCTCAGCATGCTCTACAAC+AGG | 0.441340 | 4_1:+25561985 | None:intergenic |
| AAAGATAGAACTTGAACAAA+AGG | 0.443411 | 4_1:-25560328 | Msa0541580:intron |
| ACCTGATTACTAAAATATCT+GGG | 0.445246 | 4_1:+25562759 | None:intergenic |
| GCCTCAGCTCCTTATTCTAC+AGG | 0.445592 | 4_1:-25562246 | Msa0541580:CDS |
| GAAGTGTCTTGCACAGGAAT+CGG | 0.449597 | 4_1:+25561904 | None:intergenic |
| CTGCAACAATTTCTGCAGCT+TGG | 0.450320 | 4_1:+25557556 | None:intergenic |
| GATGGTTATGTGACTAAGGA+TGG | 0.458201 | 4_1:-25561140 | Msa0541580:CDS |
| AGCAGATGTTACCCTAAAAC+CGG | 0.467549 | 4_1:-25561743 | Msa0541580:CDS |
| CGTCTTCTTCCCACCAGGAG+GGG | 0.472332 | 4_1:-25557952 | Msa0541580:CDS |
| ACCAAAGCAACAAGAAATAG+AGG | 0.472911 | 4_1:-25561644 | Msa0541580:CDS |
| TGCACCACACTCTCTTTACT+AGG | 0.475252 | 4_1:+25561799 | None:intergenic |
| CAATTTCTGGCTGTGAAAGA+TGG | 0.476635 | 4_1:+25561950 | None:intergenic |
| TCAGATGATAGACTACTTTG+AGG | 0.478302 | 4_1:+25561826 | None:intergenic |
| TGCTGAAGAAACTGCAATGT+TGG | 0.481195 | 4_1:-25560854 | Msa0541580:CDS |
| ATTCAATCCCATCACCTGAT+TGG | 0.482617 | 4_1:+25557664 | None:intergenic |
| GTTAAGGAAGCTGACCAATC+AGG | 0.484998 | 4_1:-25557678 | Msa0541580:CDS |
| CTTGAAGATGCACTGTCAAA+AGG | 0.486599 | 4_1:-25558583 | Msa0541580:CDS |
| TCTTGGTCGCCTGTGGCCGC+GGG | 0.487433 | 4_1:+25557167 | None:intergenic |
| GTCTTCTTCCCACCAGGAGG+GGG | 0.488459 | 4_1:-25557951 | Msa0541580:CDS |
| TGTTTCTTGTCTCTTCAAGA+AGG | 0.490367 | 4_1:+25558473 | None:intergenic |
| AAGAAACTGCAATGTTGGAT+AGG | 0.496092 | 4_1:-25560849 | Msa0541580:CDS |
| GATGGAGAACAAGGTGTTTG+CGG | 0.502896 | 4_1:+25563014 | None:intergenic |
| AATAAGCATGATATCTAACT+TGG | 0.511017 | 4_1:+25557042 | None:intergenic |
| TTTGACGTCCAACCTTGTCT+TGG | 0.511272 | 4_1:+25557150 | None:intergenic |
| GTTCCACCAAGGATGCCAAC+GGG | 0.512408 | 4_1:-25557376 | Msa0541580:three_prime_UTR |
| AAACAGGGCTATTTCTGAGC+AGG | 0.515557 | 4_1:-25557514 | Msa0541580:CDS |
| GTTTCTTGTCTCTTCAAGAA+GGG | 0.517316 | 4_1:+25558474 | None:intergenic |
| GTGTTGATTTAAATACCTAA+AGG | 0.517929 | 4_1:-25557415 | Msa0541580:three_prime_UTR |
| TGATTTAAATACCTAAAGGT+TGG | 0.520613 | 4_1:-25557411 | Msa0541580:three_prime_UTR |
| TTCTCAAATGCATCGAAACC+TGG | 0.520951 | 4_1:-25562273 | Msa0541580:CDS |
| TCCTTGAGGAATATCACATA+AGG | 0.521705 | 4_1:-25561357 | Msa0541580:CDS |
| AAAATATGAAAAGAAGTTGA+AGG | 0.524724 | 4_1:-25560902 | Msa0541580:CDS |
| CACTTCGTCTTCTTCCCACC+AGG | 0.525654 | 4_1:-25557957 | Msa0541580:CDS |
| ACTCCCGTTGGCATCCTTGG+TGG | 0.526700 | 4_1:+25557373 | None:intergenic |
| AATAATATACCCGCGGCCAC+AGG | 0.530247 | 4_1:-25557176 | Msa0541580:three_prime_UTR |
| GCTGCGGAGAAAAGGCAAGC+TGG | 0.532702 | 4_1:-25561083 | Msa0541580:CDS |
| TAACAAAGTTGAGAGTTACT+TGG | 0.533499 | 4_1:-25557634 | Msa0541580:CDS |
| TCGTCTTCTTCCCACCAGGA+GGG | 0.534876 | 4_1:-25557953 | Msa0541580:CDS |
| CACAGATAAAGATTCAGTGT+TGG | 0.536015 | 4_1:-25558512 | Msa0541580:CDS |
| CAATACATTTCTAGATGAGA+AGG | 0.536772 | 4_1:-25561683 | Msa0541580:CDS |
| TCCTTATGTGATATTCCTCA+AGG | 0.538776 | 4_1:+25561356 | None:intergenic |
| ACTAACAATTATCATCGCTC+AGG | 0.539225 | 4_1:+25557083 | None:intergenic |
| AACCTTGTCTTGGTCGCCTG+TGG | 0.539457 | 4_1:+25557160 | None:intergenic |
| CTTAGATAAATACGTTGAGA+AGG | 0.540323 | 4_1:-25562127 | Msa0541580:CDS |
| TAAGGAGCTGAGGCACCACC+AGG | 0.541637 | 4_1:+25562255 | None:intergenic |
| GCGTATAGCATCCTTGTTGA+AGG | 0.541958 | 4_1:-25557904 | Msa0541580:intron |
| AGAAACTGCAATGTTGGATA+GGG | 0.541960 | 4_1:-25560848 | Msa0541580:intron |
| CTGCAGAAATTGTTGCAGGT+TGG | 0.542615 | 4_1:-25557551 | Msa0541580:CDS |
| GAAAGATGGTTATGTGACTA+AGG | 0.543992 | 4_1:-25561144 | Msa0541580:CDS |
| ACATGGTAGAGTCGGAGAGA+TGG | 0.544901 | 4_1:+25562996 | None:intergenic |
| GAAGCTGACCAATCAGGTGA+TGG | 0.545832 | 4_1:-25557672 | Msa0541580:CDS |
| AGCATGATATCTAACTTGGC+AGG | 0.547229 | 4_1:+25557046 | None:intergenic |
| TTCAGGAGCTTAAGAGAGAG+AGG | 0.551217 | 4_1:-25560404 | Msa0541580:intron |
| TGTTACCCTAAAACCGGAAG+AGG | 0.553368 | 4_1:-25561737 | Msa0541580:CDS |
| GAGGTTAGCTTGTAAGTTTG+GGG | 0.554409 | 4_1:-25563084 | Msa0541580:five_prime_UTR |
| GTTGAGAGTTACTTGGCAGA+AGG | 0.554497 | 4_1:-25557627 | Msa0541580:CDS |
| ACAAGAAATAGAGGAAAGAA+GGG | 0.555242 | 4_1:-25561635 | Msa0541580:CDS |
| AATGTATTGTCCTGTGTAGA+TGG | 0.555651 | 4_1:+25561697 | None:intergenic |
| ACCGTTGGAGATTTGGAGAG+TGG | 0.557762 | 4_1:-25562066 | Msa0541580:CDS |
| GACTTAGAACCATGAGACTC+GGG | 0.558510 | 4_1:+25562216 | None:intergenic |
| GATTGGAACAAAGTGATTTG+AGG | 0.559084 | 4_1:-25557259 | Msa0541580:three_prime_UTR |
| TTCGTCTTCTTCCCACCAGG+AGG | 0.561330 | 4_1:-25557954 | Msa0541580:CDS |
| TGTGACTAAGGATGGAAAAG+TGG | 0.563049 | 4_1:-25561132 | Msa0541580:CDS |
| TGACTTAGAACCATGAGACT+CGG | 0.565112 | 4_1:+25562215 | None:intergenic |
| GAGAGTGTGGTGCAATCTGA+TGG | 0.566249 | 4_1:-25561790 | Msa0541580:CDS |
| TGATATCTGTATAACACCAC+TGG | 0.570533 | 4_1:-25557289 | Msa0541580:three_prime_UTR |
| GGAAAGCCGCCCGAGTCTCA+TGG | 0.572598 | 4_1:-25562225 | Msa0541580:CDS |
| TGCAGCCATAGCAAAGGAGA+AGG | 0.574061 | 4_1:-25560141 | Msa0541580:CDS |
| GTGCAATCTGATGGAACTGT+TGG | 0.575411 | 4_1:-25561781 | Msa0541580:CDS |
| GAGTGGACAACATTCAATAG+AGG | 0.575621 | 4_1:-25562049 | Msa0541580:CDS |
| AGTCGGAGAGATGGAGAACA+AGG | 0.577709 | 4_1:+25563005 | None:intergenic |
| TTTCGAGAAGATAGATGTGA+AGG | 0.578288 | 4_1:+25562300 | None:intergenic |
| CCATCTATCTGAGCTTCTTG+GGG | 0.580860 | 4_1:+25562090 | None:intergenic |
| AGCATAAAATGCCATGCACA+AGG | 0.584357 | 4_1:+25558758 | None:intergenic |
| AAGCTGACCAATCAGGTGAT+GGG | 0.584412 | 4_1:-25557671 | Msa0541580:CDS |
| ATATCAGAAGTGTCTTGCAC+AGG | 0.587126 | 4_1:+25561898 | None:intergenic |
| CTAGATAAATGCCTTGTGCA+TGG | 0.587164 | 4_1:-25558769 | Msa0541580:intron |
| ATACAAATAATAGTTCAAGA+TGG | 0.587337 | 4_1:-25557109 | Msa0541580:three_prime_UTR |
| GTTAAATGCAGCCATAGCAA+AGG | 0.587718 | 4_1:-25560147 | Msa0541580:CDS |
| GTGCGTATACCTCCGGAACA+TGG | 0.588860 | 4_1:+25562979 | None:intergenic |
| AATTTCTGGCTGTGAAAGAT+GGG | 0.589467 | 4_1:+25561951 | None:intergenic |
| GCTCAGATAGATGGTACCGT+TGG | 0.589756 | 4_1:-25562081 | Msa0541580:CDS |
| AGGTTAGCTTGTAAGTTTGG+GGG | 0.590063 | 4_1:-25563083 | Msa0541580:five_prime_UTR |
| GCAACGGAGGACTTGAAAGA+TGG | 0.590175 | 4_1:-25561158 | Msa0541580:CDS |
| TCCTGTAGAATAAGGAGCTG+AGG | 0.591674 | 4_1:+25562245 | None:intergenic |
| AAGGCTAATGGAATTGGCAT+AGG | 0.593123 | 4_1:+25557473 | None:intergenic |
| ACAGGCGACCAAGACAAGGT+TGG | 0.593597 | 4_1:-25557158 | Msa0541580:three_prime_UTR |
| GGTTCCACCAAGGATGCCAA+CGG | 0.594197 | 4_1:-25557377 | Msa0541580:three_prime_UTR |
| AATACATTTCTAGATGAGAA+GGG | 0.594656 | 4_1:-25561682 | Msa0541580:CDS |
| GGCATTTAGTGGTGCAACGG+AGG | 0.600836 | 4_1:-25561171 | Msa0541580:CDS |
| TCAGGAGCTTAAGAGAGAGA+GGG | 0.601172 | 4_1:-25560403 | Msa0541580:intron |
| GGCCACAGGCGACCAAGACA+AGG | 0.602080 | 4_1:-25557162 | Msa0541580:three_prime_UTR |
| CACATAAGGAATAAGTCGGA+AGG | 0.606610 | 4_1:-25561343 | Msa0541580:CDS |
| CCTCCGGAACATGGTAGAGT+CGG | 0.607165 | 4_1:+25562988 | None:intergenic |
| GTTCCAATCACCGAAGCCAG+TGG | 0.608020 | 4_1:+25557273 | None:intergenic |
| ATTGCTGAAGATCATAATGC+TGG | 0.611167 | 4_1:-25561877 | Msa0541580:CDS |
| CTCGGTAAGCCCAATAGGAG+CGG | 0.612081 | 4_1:+25561318 | None:intergenic |
| ATATCACATAAGGAATAAGT+CGG | 0.613145 | 4_1:-25561347 | Msa0541580:CDS |
| ACATCTGCAATTAAAGCAGA+AGG | 0.615227 | 4_1:-25558437 | Msa0541580:CDS |
| TGATATTCCTCAAGGAGGGT+AGG | 0.615245 | 4_1:+25561364 | None:intergenic |
| TCCACTCTCCAAATCTCCAA+CGG | 0.625691 | 4_1:+25562065 | None:intergenic |
| CTAGGCATTTAGTGGTGCAA+CGG | 0.626694 | 4_1:-25561174 | Msa0541580:intron |
| CCTGATTACTAAAATATCTG+GGG | 0.629111 | 4_1:+25562760 | None:intergenic |
| TGGGTCAAGGCAACTCCCGT+TGG | 0.629910 | 4_1:+25557361 | None:intergenic |
| TATTCCTCAAGGAGGGTAGG+TGG | 0.635993 | 4_1:+25561367 | None:intergenic |
| TATGTGATATTCCTCAAGGA+GGG | 0.637767 | 4_1:+25561360 | None:intergenic |
| TGTAGAGCATGCTGAGCAGA+AGG | 0.641501 | 4_1:-25561980 | Msa0541580:CDS |
| ATTGTCTAGAAGAAAGTGTG+AGG | 0.650588 | 4_1:-25557584 | Msa0541580:CDS |
| ACATACATCGCCATCTACAC+AGG | 0.651141 | 4_1:-25561707 | Msa0541580:CDS |
| GAGATTATTTGGTTCCACCA+AGG | 0.651203 | 4_1:-25557387 | Msa0541580:three_prime_UTR |
| ATACATTTCTAGATGAGAAG+GGG | 0.652402 | 4_1:-25561681 | Msa0541580:CDS |
| TTATGTGATATTCCTCAAGG+AGG | 0.659296 | 4_1:+25561359 | None:intergenic |
| AGAAATAGAGGAAAGAAGGG+AGG | 0.666008 | 4_1:-25561632 | Msa0541580:intron |
| TTGTCTAGAAGAAAGTGTGA+GGG | 0.667079 | 4_1:-25557583 | Msa0541580:CDS |
| CGTACAAGCCATCCATGCTG+CGG | 0.671445 | 4_1:-25561099 | Msa0541580:CDS |
| ACAACCACCTACCCTCCTTG+AGG | 0.673959 | 4_1:-25561371 | Msa0541580:CDS |
| TTTAGGTATTTAAATCAACA+CGG | 0.679085 | 4_1:+25557417 | None:intergenic |
| CCGACTCTACCATGTTCCGG+AGG | 0.687435 | 4_1:-25562988 | Msa0541580:intron |
| TTATCTACGTACCTTCAACA+AGG | 0.694330 | 4_1:+25557893 | None:intergenic |
| CTTGAAGAGACAAGAAACAA+CGG | 0.700520 | 4_1:-25558469 | Msa0541580:CDS |
| TGATCCTAGTAAAGAGAGTG+TGG | 0.702360 | 4_1:-25561803 | Msa0541580:CDS |
| AAATTTCAATAATATACCCG+CGG | 0.709693 | 4_1:-25557183 | Msa0541580:three_prime_UTR |
| AGAGACAAGAAACAACGGCA+CGG | 0.711280 | 4_1:-25558464 | Msa0541580:CDS |
| TCAAATGCATCGAAACCTGG+TGG | 0.713380 | 4_1:-25562270 | Msa0541580:CDS |
| GGTGAAGCAAGCAAGAAACA+GGG | 0.728573 | 4_1:-25557529 | Msa0541580:CDS |
| TTAGAACCATGAGACTCGGG+CGG | 0.744411 | 4_1:+25562219 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGTTAACAAAAAAATAA+AGG | + | chr4_1:25558936-25558955 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTGTTTATTGA+TGG | - | chr4_1:25559218-25559237 | Msa0541580:intron | 10.0% |
| !!! | TTTTTTTTTTGTTTATTGAT+GGG | - | chr4_1:25559219-25559238 | Msa0541580:intron | 10.0% |
| !!! | TCATTTTAAATTGAATAAAA+AGG | + | chr4_1:25559386-25559405 | None:intergenic | 10.0% |
| !! | AGAAATATTAATGTTAAAAA+AGG | - | chr4_1:25561212-25561231 | Msa0541580:intron | 10.0% |
| !!! | AAATCTAAAATTATATTGTA+TGG | + | chr4_1:25562143-25562162 | None:intergenic | 10.0% |
| !! | ATTTAGAAAGAAAAAATGTA+AGG | + | chr4_1:25558721-25558740 | None:intergenic | 15.0% |
| !!! | TTTTTTTGTTAACATTTTAG+TGG | - | chr4_1:25558939-25558958 | Msa0541580:intron | 15.0% |
| !! | ATTTGATTCTGATTATTATT+GGG | + | chr4_1:25559626-25559645 | None:intergenic | 15.0% |
| !! | AATTTGATTCTGATTATTAT+TGG | + | chr4_1:25559627-25559646 | None:intergenic | 15.0% |
| !!! | ATAATATTTGTTAAAGTAAG+TGG | - | chr4_1:25559946-25559965 | Msa0541580:intron | 15.0% |
| !!! | ATATTTTGTATTTTCATTCA+AGG | + | chr4_1:25560965-25560984 | None:intergenic | 15.0% |
| !!! | TCTTCATTTATTTTTGTATA+TGG | - | chr4_1:25560997-25561016 | Msa0541580:intron | 15.0% |
| !!! | TATCATATTTTTAGCTAATA+AGG | - | chr4_1:25561272-25561291 | Msa0541580:intron | 15.0% |
| !!! | AAACATCAAATTTTGTTTTG+AGG | - | chr4_1:25557084-25557103 | Msa0541580:three_prime_UTR | 20.0% |
| !! | AAAAATAAGAAGTAGAAGTT+AGG | + | chr4_1:25557455-25557474 | None:intergenic | 20.0% |
| !! | TTATTATATAATGTGAGCAT+TGG | - | chr4_1:25557556-25557575 | Msa0541580:CDS | 20.0% |
| !! | AAGGGTAATAAATTAGAAAA+GGG | + | chr4_1:25557838-25557857 | None:intergenic | 20.0% |
| !!! | AAGTCAAAGTCTTTTTTAAT+TGG | - | chr4_1:25557989-25558008 | Msa0541580:intron | 20.0% |
| !! | AAGAAAAAATGTAAGGAAAA+AGG | + | chr4_1:25558714-25558733 | None:intergenic | 20.0% |
| !! | AAAATATGAAAAGAAGTTGA+AGG | - | chr4_1:25559285-25559304 | Msa0541580:intron | 20.0% |
| !!! | TGATATTTGTTTGTTCATTT+TGG | - | chr4_1:25559403-25559422 | Msa0541580:intron | 20.0% |
| !!! | AAACAATTATTTCTGTATGT+GGG | - | chr4_1:25559478-25559497 | Msa0541580:intron | 20.0% |
| !! | GAAATTCAATATGAACTATT+AGG | + | chr4_1:25559566-25559585 | None:intergenic | 20.0% |
| !!! | TTTTATCTCAATACTTTTTC+AGG | - | chr4_1:25559766-25559785 | Msa0541580:intron | 20.0% |
| !! | ATATTAATATATACAGGAAG+CGG | + | chr4_1:25559923-25559942 | None:intergenic | 20.0% |
| !! | CTAACTTCAATTTATGAAAA+GGG | - | chr4_1:25560168-25560187 | Msa0541580:CDS | 20.0% |
| !!! | AATATATTCAACGTTTGTTT+TGG | + | chr4_1:25560895-25560914 | None:intergenic | 20.0% |
| !!! | ACAAACGTTGAATATATTTT+TGG | - | chr4_1:25560897-25560916 | Msa0541580:CDS | 20.0% |
| !!! | CGATTTAGAATTCTTATTAA+TGG | - | chr4_1:25561297-25561316 | Msa0541580:CDS | 20.0% |
| !! | AATGGGAAAATATAATTAGT+TGG | - | chr4_1:25562353-25562372 | Msa0541580:intron | 20.0% |
| !! | ATGGGAAAATATAATTAGTT+GGG | - | chr4_1:25562354-25562373 | Msa0541580:intron | 20.0% |
| !!! | CAAAATTTGATAATCATGTA+AGG | + | chr4_1:25562736-25562755 | None:intergenic | 20.0% |
| !! | TTTAGGTATTTAAATCAACA+CGG | + | chr4_1:25562773-25562792 | None:intergenic | 20.0% |
| !! | ATCTTGAACTATTATTTGTA+TGG | + | chr4_1:25563079-25563098 | None:intergenic | 20.0% |
| !! | ATACAAATAATAGTTCAAGA+TGG | - | chr4_1:25563078-25563097 | Msa0541580:five_prime_UTR | 20.0% |
| ! | ACCTGATTACTAAAATATCT+GGG | + | chr4_1:25557431-25557450 | None:intergenic | 25.0% |
| ! | TACCTGATTACTAAAATATC+TGG | + | chr4_1:25557432-25557451 | None:intergenic | 25.0% |
| !! | ATTGGAATTAGCATTGAAAA+AGG | - | chr4_1:25557574-25557593 | Msa0541580:CDS | 25.0% |
| !! | TTGGAATTAGCATTGAAAAA+GGG | - | chr4_1:25557575-25557594 | Msa0541580:CDS | 25.0% |
| ! | ATATTATTCCTCACTTTCAA+TGG | - | chr4_1:25557610-25557629 | Msa0541580:CDS | 25.0% |
| !!! | AGGTTTTAACTTTCAATAGT+TGG | + | chr4_1:25557662-25557681 | None:intergenic | 25.0% |
| ! | TGCAACAATAGAATTGTAAA+TGG | - | chr4_1:25557709-25557728 | Msa0541580:intron | 25.0% |
| !!! | ATGGACTAGAGAAATATATT+AGG | - | chr4_1:25557728-25557747 | Msa0541580:intron | 25.0% |
| ! | AAATATATTAGGAGAGTTGA+AGG | - | chr4_1:25557739-25557758 | Msa0541580:intron | 25.0% |
| ! | GAAGGGTAATAAATTAGAAA+AGG | + | chr4_1:25557839-25557858 | None:intergenic | 25.0% |
| ! | ATATGTAATGCAGAAATGAA+GGG | + | chr4_1:25557856-25557875 | None:intergenic | 25.0% |
| ! | AATATGTAATGCAGAAATGA+AGG | + | chr4_1:25557857-25557876 | None:intergenic | 25.0% |
| !!! | TCAAAGTCTTTTTTAATTGG+AGG | - | chr4_1:25557992-25558011 | Msa0541580:intron | 25.0% |
| !! | AATACATTTCTAGATGAGAA+GGG | - | chr4_1:25558505-25558524 | Msa0541580:CDS | 25.0% |
| !! | AATATCATCTGTGATCTTTT+TGG | - | chr4_1:25558615-25558634 | Msa0541580:intron | 25.0% |
| !! | TTATATTTTCTGTTACTCCA+TGG | - | chr4_1:25558767-25558786 | Msa0541580:CDS | 25.0% |
| ! | ATATCACATAAGGAATAAGT+CGG | - | chr4_1:25558840-25558859 | Msa0541580:intron | 25.0% |
| !! | AAAAAAACCTCTTTTTCTTC+AGG | + | chr4_1:25558907-25558926 | None:intergenic | 25.0% |
| !!! | TTTTTGTTTATTGATGGGTT+TGG | - | chr4_1:25559224-25559243 | Msa0541580:intron | 25.0% |
| !!! | CAAACAATTATTTCTGTATG+TGG | - | chr4_1:25559477-25559496 | Msa0541580:intron | 25.0% |
| ! | AATTACAAAACAAACTTGAC+AGG | + | chr4_1:25559661-25559680 | None:intergenic | 25.0% |
| !!! | TTTCTTTTATATGTGCTGTT+TGG | - | chr4_1:25559712-25559731 | Msa0541580:intron | 25.0% |
| ! | TAAGTCACTTCAAGAAAAAA+TGG | - | chr4_1:25559826-25559845 | Msa0541580:intron | 25.0% |
| ! | AAAGATAGAACTTGAACAAA+AGG | - | chr4_1:25559859-25559878 | Msa0541580:intron | 25.0% |
| ! | TATTAATATATACAGGAAGC+GGG | + | chr4_1:25559922-25559941 | None:intergenic | 25.0% |
| ! | AGAAAGTTTGAAGAAAAATC+AGG | - | chr4_1:25560001-25560020 | Msa0541580:intron | 25.0% |
| ! | GCTAACTTCAATTTATGAAA+AGG | - | chr4_1:25560167-25560186 | Msa0541580:CDS | 25.0% |
| !! | AAAGGGATATGATTTTCATT+AGG | - | chr4_1:25560185-25560204 | Msa0541580:CDS | 25.0% |
| !! | CATGCAAATAAATTTAGTTC+TGG | - | chr4_1:25560296-25560315 | Msa0541580:intron | 25.0% |
| ! | AGTATACTCAAAATTGCATA+AGG | + | chr4_1:25560331-25560350 | None:intergenic | 25.0% |
| !!! | TGAACTAGTTATTTTGTCTA+TGG | - | chr4_1:25561076-25561095 | Msa0541580:CDS | 25.0% |
| ! | TTGCAGTTTGATATCATAAA+AGG | - | chr4_1:25562197-25562216 | Msa0541580:CDS | 25.0% |
| ! | ACGTAGATAAATTACCAATA+TGG | - | chr4_1:25562307-25562326 | Msa0541580:CDS | 25.0% |
| ! | CATAAATGTAAATGCCATAT+TGG | + | chr4_1:25562324-25562343 | None:intergenic | 25.0% |
| ! | TGGGAAAATATAATTAGTTG+GGG | - | chr4_1:25562355-25562374 | Msa0541580:intron | 25.0% |
| !!! | TAATTTGTGTTTTGATACAC+TGG | - | chr4_1:25562399-25562418 | Msa0541580:intron | 25.0% |
| !!! | GTGTTGATTTAAATACCTAA+AGG | - | chr4_1:25562772-25562791 | Msa0541580:CDS | 25.0% |
| ! | TGATTTAAATACCTAAAGGT+TGG | - | chr4_1:25562776-25562795 | Msa0541580:CDS | 25.0% |
| ! | AAAATGTTGCATTGTTAGTA+TGG | - | chr4_1:25562981-25563000 | Msa0541580:intron | 25.0% |
| ! | AAATTTCAATAATATACCCG+CGG | - | chr4_1:25563004-25563023 | Msa0541580:five_prime_UTR | 25.0% |
| ! | AATAAGCATGATATCTAACT+TGG | + | chr4_1:25563148-25563167 | None:intergenic | 25.0% |
| TCGAGATGAAAATTGCAAAA+TGG | + | chr4_1:25557387-25557406 | None:intergenic | 30.0% | |
| CCTGATTACTAAAATATCTG+GGG | + | chr4_1:25557430-25557449 | None:intergenic | 30.0% | |
| ! | TGTTGCAACTGATTTATCAA+TGG | - | chr4_1:25557521-25557540 | Msa0541580:CDS | 30.0% |
| !! | AGTTGGTGACTAAATTAAGA+CGG | + | chr4_1:25557645-25557664 | None:intergenic | 30.0% |
| ACTTCAGAAGAGACATTTAA+AGG | + | chr4_1:25557682-25557701 | None:intergenic | 30.0% | |
| ATGTGAAACTGACGAAAATT+TGG | + | chr4_1:25557811-25557830 | None:intergenic | 30.0% | |
| CTTAGATAAATACGTTGAGA+AGG | - | chr4_1:25558060-25558079 | Msa0541580:intron | 30.0% | |
| GAATCTTCTATTGCAATTTC+TGG | + | chr4_1:25558253-25558272 | None:intergenic | 30.0% | |
| ! | TAGACTACTTTGAGGATATT+CGG | + | chr4_1:25558356-25558375 | None:intergenic | 30.0% |
| ! | CAATACATTTCTAGATGAGA+AGG | - | chr4_1:25558504-25558523 | Msa0541580:CDS | 30.0% |
| ! | ATACATTTCTAGATGAGAAG+GGG | - | chr4_1:25558506-25558525 | Msa0541580:CDS | 30.0% |
| AACAAGAAATAGAGGAAAGA+AGG | - | chr4_1:25558551-25558570 | Msa0541580:CDS | 30.0% | |
| ACAAGAAATAGAGGAAAGAA+GGG | - | chr4_1:25558552-25558571 | Msa0541580:CDS | 30.0% | |
| !! | GATCTTTTTGGTAATCATGA+TGG | - | chr4_1:25558627-25558646 | Msa0541580:intron | 30.0% |
| TTAACTAATACATTCTGCCA+TGG | + | chr4_1:25558787-25558806 | None:intergenic | 30.0% | |
| ! | TCATTTTCCTGAAGAAAAAG+AGG | - | chr4_1:25558897-25558916 | Msa0541580:intron | 30.0% |
| !!! | TCATTTTGGTCTTAAATACC+TGG | - | chr4_1:25559417-25559436 | Msa0541580:intron | 30.0% |
| ATTGCAAAAGACAATAACAC+AGG | - | chr4_1:25559440-25559459 | Msa0541580:intron | 30.0% | |
| ATATGAACTATTAGGCTCAA+TGG | + | chr4_1:25559558-25559577 | None:intergenic | 30.0% | |
| !!! | AGGTGCACATTAGTTTTTAT+TGG | - | chr4_1:25559879-25559898 | Msa0541580:intron | 30.0% |
| ATTAATATATACAGGAAGCG+GGG | + | chr4_1:25559921-25559940 | None:intergenic | 30.0% | |
| !!! | TTCAGACATTTTTTCAAGCT+GGG | + | chr4_1:25560075-25560094 | None:intergenic | 30.0% |
| CTGAAGCAAATATTAATGTG+AGG | - | chr4_1:25560090-25560109 | Msa0541580:intron | 30.0% | |
| !! | ATAGCCATAATAGTTTTGCT+TGG | - | chr4_1:25560230-25560249 | Msa0541580:intron | 30.0% |
| !! | TAGCCATAATAGTTTTGCTT+GGG | - | chr4_1:25560231-25560250 | Msa0541580:intron | 30.0% |
| ATACCCAAGCAAAACTATTA+TGG | + | chr4_1:25560237-25560256 | None:intergenic | 30.0% | |
| TTCATTAAAACCTGCTTAGT+AGG | - | chr4_1:25560354-25560373 | Msa0541580:CDS | 30.0% | |
| AATGTAATTTCCTACTAAGC+AGG | + | chr4_1:25560367-25560386 | None:intergenic | 30.0% | |
| AGTTTGCCAATGTAAATTCT+TGG | - | chr4_1:25560434-25560453 | Msa0541580:intron | 30.0% | |
| GTTAGACCAAGAATTTACAT+TGG | + | chr4_1:25560443-25560462 | None:intergenic | 30.0% | |
| ! | ACTTGTTTGCTAAGAATTAC+GGG | + | chr4_1:25560479-25560498 | None:intergenic | 30.0% |
| ! | CACTTGTTTGCTAAGAATTA+CGG | + | chr4_1:25560480-25560499 | None:intergenic | 30.0% |
| ! | TTTACATGGTAGGTTAGTTA+TGG | - | chr4_1:25560511-25560530 | Msa0541580:intron | 30.0% |
| AATGTAATTTCCTACTAAGC+AGG | + | chr4_1:25560367-25560386 | None:intergenic | 30.0% | |
| AGTTTGCCAATGTAAATTCT+TGG | - | chr4_1:25560434-25560453 | Msa0541580:intron | 30.0% | |
| GTTAGACCAAGAATTTACAT+TGG | + | chr4_1:25560443-25560462 | None:intergenic | 30.0% | |
| ! | ACTTGTTTGCTAAGAATTAC+GGG | + | chr4_1:25560479-25560498 | None:intergenic | 30.0% |
| ! | CACTTGTTTGCTAAGAATTA+CGG | + | chr4_1:25560480-25560499 | None:intergenic | 30.0% |
| ! | TTTACATGGTAGGTTAGTTA+TGG | - | chr4_1:25560511-25560530 | Msa0541580:intron | 30.0% |
| GAAAAGATTCAAACAATGAC+AGG | + | chr4_1:25560837-25560856 | None:intergenic | 30.0% | |
| ! | GTCATTGTTTGAATCTTTTC+TGG | - | chr4_1:25560837-25560856 | Msa0541580:intron | 30.0% |
| ! | TATGTTTTGCTAGACAACTA+CGG | - | chr4_1:25561123-25561142 | Msa0541580:CDS | 30.0% |
| TGTTAAAAAAGGCAAAACAC+AGG | - | chr4_1:25561223-25561242 | Msa0541580:intron | 30.0% | |
| GATTCTAATTCTGTCTGAAT+TGG | + | chr4_1:25561634-25561653 | None:intergenic | 30.0% | |
| ! | TAAAGATTCAGTGTTGGATT+TGG | - | chr4_1:25561681-25561700 | Msa0541580:CDS | 30.0% |
| !!! | TTATCTGCTGTTGACTTTTT+GGG | - | chr4_1:25561785-25561804 | Msa0541580:CDS | 30.0% |
| TATCAAAAGAAAGTTCTGCA+AGG | + | chr4_1:25561865-25561884 | None:intergenic | 30.0% | |
| TATATTAGTGACAAATCCGT+TGG | - | chr4_1:25561955-25561974 | Msa0541580:CDS | 30.0% | |
| TGAATGTCAAAGATAACCAA+CGG | + | chr4_1:25561974-25561993 | None:intergenic | 30.0% | |
| ACATTTATGTGTGTGCTTAA+TGG | - | chr4_1:25562335-25562354 | Msa0541580:intron | 30.0% | |
| CATTTATGTGTGTGCTTAAT+GGG | - | chr4_1:25562336-25562355 | Msa0541580:intron | 30.0% | |
| GAAAATATAATTAGTTGGGG+AGG | - | chr4_1:25562358-25562377 | Msa0541580:intron | 30.0% | |
| AAACACAAATTATGTCTCCA+TGG | + | chr4_1:25562391-25562410 | None:intergenic | 30.0% | |
| AGAGATGAAAATGAGAGTTA+GGG | + | chr4_1:25562447-25562466 | None:intergenic | 30.0% | |
| TAGAGATGAAAATGAGAGTT+AGG | + | chr4_1:25562448-25562467 | None:intergenic | 30.0% | |
| TAACAAAGTTGAGAGTTACT+TGG | - | chr4_1:25562553-25562572 | Msa0541580:intron | 30.0% | |
| TGATAATCATGTAAGGCTAA+TGG | + | chr4_1:25562729-25562748 | None:intergenic | 30.0% | |
| AAATAATCTCTCCAACCTTT+AGG | + | chr4_1:25562790-25562809 | None:intergenic | 30.0% | |
| TAAAGGTTGGAGAGATTATT+TGG | - | chr4_1:25562789-25562808 | Msa0541580:CDS | 30.0% | |
| ! | GTGATTTTGCTCATGTATCA+GGG | + | chr4_1:25557062-25557081 | None:intergenic | 35.0% |
| ! | TGTGATTTTGCTCATGTATC+AGG | + | chr4_1:25557063-25557082 | None:intergenic | 35.0% |
| !! | TTGAGGTTAGCTTGTAAGTT+TGG | - | chr4_1:25557101-25557120 | Msa0541580:three_prime_UTR | 35.0% |
| !! | TGAGGTTAGCTTGTAAGTTT+GGG | - | chr4_1:25557102-25557121 | Msa0541580:three_prime_UTR | 35.0% |
| CATTATGCTTATTTGACTGC+AGG | - | chr4_1:25557360-25557379 | Msa0541580:three_prime_UTR | 35.0% | |
| ! | ATATCTGGGGTTTGTTCTAA+AGG | + | chr4_1:25557417-25557436 | None:intergenic | 35.0% |
| !!! | CCCCAGATATTTTAGTAATC+AGG | - | chr4_1:25557427-25557446 | Msa0541580:three_prime_UTR | 35.0% |
| ! | GTTGATTCAGGATACTACTT+AGG | - | chr4_1:25557761-25557780 | Msa0541580:intron | 35.0% |
| TTTCGAGAAGATAGATGTGA+AGG | + | chr4_1:25557890-25557909 | None:intergenic | 35.0% | |
| !!! | TCTTTTTTAATTGGAGGTGC+TGG | - | chr4_1:25557998-25558017 | Msa0541580:intron | 35.0% |
| !! | AATTTCTGGCTGTGAAAGAT+GGG | + | chr4_1:25558239-25558258 | None:intergenic | 35.0% |
| ATTGCTGAAGATCATAATGC+TGG | - | chr4_1:25558310-25558329 | Msa0541580:intron | 35.0% | |
| ! | AGACTACTTTGAGGATATTC+GGG | + | chr4_1:25558355-25558374 | None:intergenic | 35.0% |
| TCAGATGATAGACTACTTTG+AGG | + | chr4_1:25558364-25558383 | None:intergenic | 35.0% | |
| !!! | TTTTAGGGTAACATCTGCTT+CGG | + | chr4_1:25558443-25558462 | None:intergenic | 35.0% |
| AATGTATTGTCCTGTGTAGA+TGG | + | chr4_1:25558493-25558512 | None:intergenic | 35.0% | |
| ACCAAAGCAACAAGAAATAG+AGG | - | chr4_1:25558543-25558562 | Msa0541580:CDS | 35.0% | |
| ! | TCCTCTATTTCTTGTTGCTT+TGG | + | chr4_1:25558547-25558566 | None:intergenic | 35.0% |
| CTGAGTTTGTCTTGATATAC+AGG | - | chr4_1:25558583-25558602 | Msa0541580:CDS | 35.0% | |
| !!! | CAGATGATTTTGTTATTCCC+TGG | - | chr4_1:25558673-25558692 | Msa0541580:intron | 35.0% |
| AATGTAAGGAAAAAGGCTCT+TGG | + | chr4_1:25558707-25558726 | None:intergenic | 35.0% | |
| TATGTGATATTCCTCAAGGA+GGG | + | chr4_1:25558830-25558849 | None:intergenic | 35.0% | |
| TTATGTGATATTCCTCAAGG+AGG | + | chr4_1:25558831-25558850 | None:intergenic | 35.0% | |
| TCCTTGAGGAATATCACATA+AGG | - | chr4_1:25558830-25558849 | Msa0541580:intron | 35.0% | |
| TCCTTATGTGATATTCCTCA+AGG | + | chr4_1:25558834-25558853 | None:intergenic | 35.0% | |
| TTCAGGAAAATGACTGTTCT+CGG | + | chr4_1:25558890-25558909 | None:intergenic | 35.0% | |
| AGCTATCTTCTTGAAACACT+AGG | - | chr4_1:25558995-25559014 | Msa0541580:intron | 35.0% | |
| TTGAAACACTAGGCATTTAG+TGG | - | chr4_1:25559005-25559024 | Msa0541580:intron | 35.0% | |
| GAAAGATGGTTATGTGACTA+AGG | - | chr4_1:25559043-25559062 | Msa0541580:intron | 35.0% | |
| !! | TGAAGAGAAGAAAGCATTGA+AGG | - | chr4_1:25559148-25559167 | Msa0541580:intron | 35.0% |
| ! | TTCAGCAAGCATTAGTTCTT+TGG | + | chr4_1:25559320-25559339 | None:intergenic | 35.0% |
| AAGAAACTGCAATGTTGGAT+AGG | - | chr4_1:25559338-25559357 | Msa0541580:intron | 35.0% | |
| AGAAACTGCAATGTTGGATA+GGG | - | chr4_1:25559339-25559358 | Msa0541580:intron | 35.0% | |
| ! | GTTATTGTCTTTTGCAATCC+AGG | + | chr4_1:25559438-25559457 | None:intergenic | 35.0% |
| ! | CATTTGACTCGTTAATTACG+TGG | - | chr4_1:25559529-25559548 | Msa0541580:intron | 35.0% |
| AGTTTGTCAACTGATCAAGT+CGG | - | chr4_1:25559685-25559704 | Msa0541580:intron | 35.0% | |
| TAAAAGCAAAGTTCAAGACC+CGG | + | chr4_1:25559751-25559770 | None:intergenic | 35.0% | |
| TTAATATATACAGGAAGCGG+GGG | + | chr4_1:25559920-25559939 | None:intergenic | 35.0% | |
| !!! | CTTCAGACATTTTTTCAAGC+TGG | + | chr4_1:25560076-25560095 | None:intergenic | 35.0% |
| !! | TGAGGCTTACTCTAGAATTA+AGG | - | chr4_1:25560108-25560127 | Msa0541580:CDS | 35.0% |
| TGCATGTTCATTTACATGGT+AGG | - | chr4_1:25560501-25560520 | Msa0541580:intron | 35.0% | |
| TTCGTAAAAACCTGCTTAGT+AGG | - | chr4_1:25560541-25560560 | Msa0541580:intron | 35.0% | |
| TGCATGTTCATTTACATGGT+AGG | - | chr4_1:25560501-25560520 | Msa0541580:intron | 35.0% | |
| !!! | TGACAGGTTTGCTGTTATTT+TGG | + | chr4_1:25560821-25560840 | None:intergenic | 35.0% |
| !!! | CAACGTTTGTTTTGGTCTTT+GGG | + | chr4_1:25560887-25560906 | None:intergenic | 35.0% |
| !!! | TCAACGTTTGTTTTGGTCTT+TGG | + | chr4_1:25560888-25560907 | None:intergenic | 35.0% |
| !! | CATGGTTGGCTTGAAATTAT+TGG | - | chr4_1:25561146-25561165 | Msa0541580:CDS | 35.0% |
| ! | TTATTAATGGACGTGCTTCT+TGG | - | chr4_1:25561310-25561329 | Msa0541580:CDS | 35.0% |
| CATTTATCTAGAGACTCAGA+TGG | + | chr4_1:25561409-25561428 | None:intergenic | 35.0% | |
| ! | TCTTTGCAGTCTTATCTTGA+AGG | - | chr4_1:25561652-25561671 | Msa0541580:CDS | 35.0% |
| CACAGATAAAGATTCAGTGT+TGG | - | chr4_1:25561675-25561694 | Msa0541580:CDS | 35.0% | |
| GTTTCTTGTCTCTTCAAGAA+GGG | + | chr4_1:25561716-25561735 | None:intergenic | 35.0% | |
| TGTTTCTTGTCTCTTCAAGA+AGG | + | chr4_1:25561717-25561736 | None:intergenic | 35.0% | |
| CTTGAAGAGACAAGAAACAA+CGG | - | chr4_1:25561718-25561737 | Msa0541580:CDS | 35.0% | |
| ACATCTGCAATTAAAGCAGA+AGG | - | chr4_1:25561750-25561769 | Msa0541580:CDS | 35.0% | |
| !!! | CTTATCTGCTGTTGACTTTT+TGG | - | chr4_1:25561784-25561803 | Msa0541580:CDS | 35.0% |
| CGATGCTTATAGCATGAATA+TGG | - | chr4_1:25561907-25561926 | Msa0541580:CDS | 35.0% | |
| TTGACTGCTGAAGAACTTTA+TGG | - | chr4_1:25562049-25562068 | Msa0541580:CDS | 35.0% | |
| GTAACAGTCAACTACATTTC+AGG | + | chr4_1:25562100-25562119 | None:intergenic | 35.0% | |
| TTATCTACGTACCTTCAACA+AGG | + | chr4_1:25562297-25562316 | None:intergenic | 35.0% | |
| ! | TGGCTACCTTTATTTCTTTC+TGG | - | chr4_1:25562419-25562438 | Msa0541580:intron | 35.0% |
| ! | ATTGTCTAGAAGAAAGTGTG+AGG | - | chr4_1:25562603-25562622 | Msa0541580:intron | 35.0% |
| ! | TTGTCTAGAAGAAAGTGTGA+GGG | - | chr4_1:25562604-25562623 | Msa0541580:intron | 35.0% |
| TCATGTAAGGCTAATGGAAT+TGG | + | chr4_1:25562723-25562742 | None:intergenic | 35.0% | |
| !!! | ACGCTAACTTGTTTTCTTGT+GGG | + | chr4_1:25562848-25562867 | None:intergenic | 35.0% |
| !!! | AACGCTAACTTGTTTTCTTG+TGG | + | chr4_1:25562849-25562868 | None:intergenic | 35.0% |
| TGATATCTGTATAACACCAC+TGG | - | chr4_1:25562898-25562917 | Msa0541580:intron | 35.0% | |
| GATTGGAACAAAGTGATTTG+AGG | - | chr4_1:25562928-25562947 | Msa0541580:intron | 35.0% | |
| ACTAACAATTATCATCGCTC+AGG | + | chr4_1:25563107-25563126 | None:intergenic | 35.0% | |
| ! | ATTTTGCTCATGTATCAGGG+TGG | + | chr4_1:25557059-25557078 | None:intergenic | 40.0% |
| !! | GAGGTTAGCTTGTAAGTTTG+GGG | - | chr4_1:25557103-25557122 | Msa0541580:three_prime_UTR | 40.0% |
| !! | AGGTTAGCTTGTAAGTTTGG+GGG | - | chr4_1:25557104-25557123 | Msa0541580:three_prime_UTR | 40.0% |
| ! | GAGAAAGCGTAAAGTTGCAT+CGG | + | chr4_1:25557259-25557278 | None:intergenic | 40.0% |
| TTGCGAAACCATTGAAAGTG+AGG | + | chr4_1:25557621-25557640 | None:intergenic | 40.0% | |
| TTCTCAAATGCATCGAAACC+TGG | - | chr4_1:25557914-25557933 | Msa0541580:CDS | 40.0% | |
| TGACTTAGAACCATGAGACT+CGG | + | chr4_1:25557975-25557994 | None:intergenic | 40.0% | |
| CTTCTGGCAGCTTATCAATT+TGG | - | chr4_1:25558034-25558053 | Msa0541580:intron | 40.0% | |
| ACCATCTATCTGAGCTTCTT+GGG | + | chr4_1:25558101-25558120 | None:intergenic | 40.0% | |
| TACCATCTATCTGAGCTTCT+TGG | + | chr4_1:25558102-25558121 | None:intergenic | 40.0% | |
| GAGTGGACAACATTCAATAG+AGG | - | chr4_1:25558138-25558157 | Msa0541580:intron | 40.0% | |
| !! | CAATTTCTGGCTGTGAAAGA+TGG | + | chr4_1:25558240-25558259 | None:intergenic | 40.0% |
| !! | ATATCAGAAGTGTCTTGCAC+AGG | + | chr4_1:25558292-25558311 | None:intergenic | 40.0% |
| TTTGAGGATATTCGGGAAAC+TGG | + | chr4_1:25558348-25558367 | None:intergenic | 40.0% | |
| TGATCCTAGTAAAGAGAGTG+TGG | - | chr4_1:25558384-25558403 | Msa0541580:intron | 40.0% | |
| AGCAGATGTTACCCTAAAAC+CGG | - | chr4_1:25558444-25558463 | Msa0541580:CDS | 40.0% | |
| ! | AATTGCCTCTTCCGGTTTTA+GGG | + | chr4_1:25558458-25558477 | None:intergenic | 40.0% |
| GTATGTTGAATTGCCTCTTC+CGG | + | chr4_1:25558466-25558485 | None:intergenic | 40.0% | |
| AGAAATAGAGGAAAGAAGGG+AGG | - | chr4_1:25558555-25558574 | Msa0541580:CDS | 40.0% | |
| CACATAAGGAATAAGTCGGA+AGG | - | chr4_1:25558844-25558863 | Msa0541580:intron | 40.0% | |
| GATGGTTATGTGACTAAGGA+TGG | - | chr4_1:25559047-25559066 | Msa0541580:intron | 40.0% | |
| TGTGACTAAGGATGGAAAAG+TGG | - | chr4_1:25559055-25559074 | Msa0541580:intron | 40.0% | |
| ACTCTCTAATCTATGCGAGT+AGG | - | chr4_1:25559178-25559197 | Msa0541580:intron | 40.0% | |
| ! | CTTGCATCTTTGTTTGTGCT+AGG | - | chr4_1:25559261-25559280 | Msa0541580:intron | 40.0% |
| TGCTGAAGAAACTGCAATGT+TGG | - | chr4_1:25559333-25559352 | Msa0541580:intron | 40.0% | |
| !! | GTTTGGCTCTACAATGTTAC+CGG | - | chr4_1:25559729-25559748 | Msa0541580:intron | 40.0% |
| !! | TTTGGCTCTACAATGTTACC+GGG | - | chr4_1:25559730-25559749 | Msa0541580:intron | 40.0% |
| TAATATATACAGGAAGCGGG+GGG | + | chr4_1:25559919-25559938 | None:intergenic | 40.0% | |
| GAAAAATCAGGAGTTAGCAC+AGG | - | chr4_1:25560013-25560032 | Msa0541580:intron | 40.0% | |
| GTTAAATGCAGCCATAGCAA+AGG | - | chr4_1:25560040-25560059 | Msa0541580:intron | 40.0% | |
| ! | GTTTTGCTTGGGTATAAAGC+CGG | - | chr4_1:25560242-25560261 | Msa0541580:intron | 40.0% |
| ! | TTTTGCTTGGGTATAAAGCC+GGG | - | chr4_1:25560243-25560262 | Msa0541580:intron | 40.0% |
| GTGCTGCATGTTCATTTACA+TGG | - | chr4_1:25560497-25560516 | Msa0541580:intron | 40.0% | |
| ! | ACATGGTAGGTTAGTTATGG+AGG | - | chr4_1:25560514-25560533 | Msa0541580:intron | 40.0% |
| GTGCTGCATGTTCATTTACA+TGG | - | chr4_1:25560497-25560516 | Msa0541580:intron | 40.0% | |
| ! | ACATGGTAGGTTAGTTATGG+AGG | - | chr4_1:25560514-25560533 | Msa0541580:intron | 40.0% |
| !! | GAGCATTGAAGGAAGTTATC+TGG | + | chr4_1:25560785-25560804 | None:intergenic | 40.0% |
| !! | GTCGACTTTTGATAGTTGCA+AGG | - | chr4_1:25561245-25561264 | Msa0541580:intron | 40.0% |
| CTAGATAAATGCCTTGTGCA+TGG | - | chr4_1:25561418-25561437 | Msa0541580:intron | 40.0% | |
| AGCATAAAATGCCATGCACA+AGG | + | chr4_1:25561432-25561451 | None:intergenic | 40.0% | |
| ! | TGCTGCACAAAGTTTTGCTT+TGG | - | chr4_1:25561478-25561497 | Msa0541580:intron | 40.0% |
| TGGTAAGCAGAATTGGAAAC+TGG | + | chr4_1:25561534-25561553 | None:intergenic | 40.0% | |
| TGGTAAGTGGTAAGCAGAAT+TGG | + | chr4_1:25561541-25561560 | None:intergenic | 40.0% | |
| GATGACAAGAAACTGGTAAG+TGG | + | chr4_1:25561554-25561573 | None:intergenic | 40.0% | |
| ATGCACAGATGACAAGAAAC+TGG | + | chr4_1:25561561-25561580 | None:intergenic | 40.0% | |
| CTTGAAGATGCACTGTCAAA+AGG | - | chr4_1:25561604-25561623 | Msa0541580:intron | 40.0% | |
| GTCAACAGCAGATAAGAACA+CGG | + | chr4_1:25561780-25561799 | None:intergenic | 40.0% | |
| AGGTATGTTGGCACATTCTT+TGG | - | chr4_1:25562259-25562278 | Msa0541580:CDS | 40.0% | |
| ! | AGGGCACCAGAAAGAAATAA+AGG | + | chr4_1:25562428-25562447 | None:intergenic | 40.0% |
| CAGCTTCCTTAACCTGAATA+TGG | + | chr4_1:25562502-25562521 | None:intergenic | 40.0% | |
| ATTCAATCCCATCACCTGAT+TGG | + | chr4_1:25562526-25562545 | None:intergenic | 40.0% | |
| TGCAACAATTTCTGCAGCTT+GGG | + | chr4_1:25562633-25562652 | None:intergenic | 40.0% | |
| TGCAGAAATTGTTGCAGGTT+GGG | - | chr4_1:25562637-25562656 | Msa0541580:intron | 40.0% | |
| AAGGCTAATGGAATTGGCAT+AGG | + | chr4_1:25562717-25562736 | None:intergenic | 40.0% | |
| ! | GAGATTATTTGGTTCCACCA+AGG | - | chr4_1:25562800-25562819 | Msa0541580:CDS | 40.0% |
| !! | ACTTGTTTTCTTGTGGGTCA+AGG | + | chr4_1:25562842-25562861 | None:intergenic | 40.0% |
| AGCATGATATCTAACTTGGC+AGG | + | chr4_1:25563144-25563163 | None:intergenic | 40.0% | |
| ! | GATGGAGAACAAGGTGTTTG+CGG | + | chr4_1:25557176-25557195 | None:intergenic | 45.0% |
| ! | GGAGAGTTGAAGGTTGATTC+AGG | - | chr4_1:25557749-25557768 | Msa0541580:intron | 45.0% |
| TCAAATGCATCGAAACCTGG+TGG | - | chr4_1:25557917-25557936 | Msa0541580:CDS | 45.0% | |
| TCCTGTAGAATAAGGAGCTG+AGG | + | chr4_1:25557945-25557964 | None:intergenic | 45.0% | |
| GACTTAGAACCATGAGACTC+GGG | + | chr4_1:25557974-25557993 | None:intergenic | 45.0% | |
| ! | TGGTGTAAGTGCTGTTCTTC+TGG | - | chr4_1:25558018-25558037 | Msa0541580:intron | 45.0% |
| CCATCTATCTGAGCTTCTTG+GGG | + | chr4_1:25558100-25558119 | None:intergenic | 45.0% | |
| AGATGGTACCGTTGGAGATT+TGG | - | chr4_1:25558114-25558133 | Msa0541580:intron | 45.0% | |
| TCCACTCTCCAAATCTCCAA+CGG | + | chr4_1:25558125-25558144 | None:intergenic | 45.0% | |
| ! | GAAGTGTCTTGCACAGGAAT+CGG | + | chr4_1:25558286-25558305 | None:intergenic | 45.0% |
| TGCACCACACTCTCTTTACT+AGG | + | chr4_1:25558391-25558410 | None:intergenic | 45.0% | |
| GTGCAATCTGATGGAACTGT+TGG | - | chr4_1:25558406-25558425 | Msa0541580:intron | 45.0% | |
| TGTTACCCTAAAACCGGAAG+AGG | - | chr4_1:25558450-25558469 | Msa0541580:CDS | 45.0% | |
| ! | GAATTGCCTCTTCCGGTTTT+AGG | + | chr4_1:25558459-25558478 | None:intergenic | 45.0% |
| ACATACATCGCCATCTACAC+AGG | - | chr4_1:25558480-25558499 | Msa0541580:CDS | 45.0% | |
| TGATATTCCTCAAGGAGGGT+AGG | + | chr4_1:25558826-25558845 | None:intergenic | 45.0% | |
| CTAGGCATTTAGTGGTGCAA+CGG | - | chr4_1:25559013-25559032 | Msa0541580:intron | 45.0% | |
| TTCAGGAGCTTAAGAGAGAG+AGG | - | chr4_1:25559783-25559802 | Msa0541580:intron | 45.0% | |
| TCAGGAGCTTAAGAGAGAGA+GGG | - | chr4_1:25559784-25559803 | Msa0541580:intron | 45.0% | |
| TTTGCTTGGGTATAAAGCCG+GGG | - | chr4_1:25560244-25560263 | Msa0541580:intron | 45.0% | |
| !! | CTCATCACGAAGAGCATTGA+AGG | + | chr4_1:25560796-25560815 | None:intergenic | 45.0% |
| CATTCAGTACAGCTGTACCA+AGG | - | chr4_1:25560927-25560946 | Msa0541580:intron | 45.0% | |
| !! | GGACTTGTGTTGCTTCTTTG+AGG | - | chr4_1:25561018-25561037 | Msa0541580:intron | 45.0% |
| !! | CTTGTGTTGCTTCTTTGAGG+TGG | - | chr4_1:25561021-25561040 | Msa0541580:intron | 45.0% |
| TTTGCTAGACAACTACGGCA+TGG | - | chr4_1:25561128-25561147 | Msa0541580:CDS | 45.0% | |
| AGAGACAAGAAACAACGGCA+CGG | - | chr4_1:25561723-25561742 | Msa0541580:CDS | 45.0% | |
| GCGTATAGCATCCTTGTTGA+AGG | - | chr4_1:25562283-25562302 | Msa0541580:CDS | 45.0% | |
| CAAACTGTTGCGCCATATTC+AGG | - | chr4_1:25562487-25562506 | Msa0541580:intron | 45.0% | |
| ! | GTTGCGCCATATTCAGGTTA+AGG | - | chr4_1:25562493-25562512 | Msa0541580:intron | 45.0% |
| GTTAAGGAAGCTGACCAATC+AGG | - | chr4_1:25562509-25562528 | Msa0541580:intron | 45.0% | |
| AAGCTGACCAATCAGGTGAT+GGG | - | chr4_1:25562516-25562535 | Msa0541580:intron | 45.0% | |
| GTTGAGAGTTACTTGGCAGA+AGG | - | chr4_1:25562560-25562579 | Msa0541580:intron | 45.0% | |
| CTGCAACAATTTCTGCAGCT+TGG | + | chr4_1:25562634-25562653 | None:intergenic | 45.0% | |
| CAAGCTGCAGAAATTGTTGC+AGG | - | chr4_1:25562632-25562651 | Msa0541580:intron | 45.0% | |
| CTGCAGAAATTGTTGCAGGT+TGG | - | chr4_1:25562636-25562655 | Msa0541580:intron | 45.0% | |
| GGTGAAGCAAGCAAGAAACA+GGG | - | chr4_1:25562658-25562677 | Msa0541580:intron | 45.0% | |
| !! | AAACAGGGCTATTTCTGAGC+AGG | - | chr4_1:25562673-25562692 | Msa0541580:intron | 45.0% |
| !! | CTGTATAACACCACTGGCTT+CGG | - | chr4_1:25562904-25562923 | Msa0541580:intron | 45.0% |
| TTTGACGTCCAACCTTGTCT+TGG | + | chr4_1:25563040-25563059 | None:intergenic | 45.0% | |
| !! | CATTATATAATAATAATATT+AGG | + | chr4_1:25557549-25557568 | None:intergenic | 5.0% |
| !! | TATATAATATTAATATATAC+AGG | + | chr4_1:25559929-25559948 | None:intergenic | 5.0% |
| AGTCGGAGAGATGGAGAACA+AGG | + | chr4_1:25557185-25557204 | None:intergenic | 50.0% | |
| ACATGGTAGAGTCGGAGAGA+TGG | + | chr4_1:25557194-25557213 | None:intergenic | 50.0% | |
| TCTCCGACTCTACCATGTTC+CGG | - | chr4_1:25557196-25557215 | Msa0541580:three_prime_UTR | 50.0% | |
| AGCGTAAGTGCGTATACCTC+CGG | + | chr4_1:25557218-25557237 | None:intergenic | 50.0% | |
| GCCTCAGCTCCTTATTCTAC+AGG | - | chr4_1:25557941-25557960 | Msa0541580:CDS | 50.0% | |
| GGCGGCTTTCCTGTAGAATA+AGG | + | chr4_1:25557953-25557972 | None:intergenic | 50.0% | |
| TTAGAACCATGAGACTCGGG+CGG | + | chr4_1:25557971-25557990 | None:intergenic | 50.0% | |
| CCCCAAGAAGCTCAGATAGA+TGG | - | chr4_1:25558097-25558116 | Msa0541580:intron | 50.0% | |
| GCTCAGATAGATGGTACCGT+TGG | - | chr4_1:25558106-25558125 | Msa0541580:intron | 50.0% | |
| ACCGTTGGAGATTTGGAGAG+TGG | - | chr4_1:25558121-25558140 | Msa0541580:intron | 50.0% | |
| TGCTCAGCATGCTCTACAAC+AGG | + | chr4_1:25558205-25558224 | None:intergenic | 50.0% | |
| TGTAGAGCATGCTGAGCAGA+AGG | - | chr4_1:25558207-25558226 | Msa0541580:intron | 50.0% | |
| ! | GAGAGTGTGGTGCAATCTGA+TGG | - | chr4_1:25558397-25558416 | Msa0541580:intron | 50.0% |
| TATTCCTCAAGGAGGGTAGG+TGG | + | chr4_1:25558823-25558842 | None:intergenic | 50.0% | |
| CTGTTCTCGGTAAGCCCAAT+AGG | + | chr4_1:25558877-25558896 | None:intergenic | 50.0% | |
| GCAACGGAGGACTTGAAAGA+TGG | - | chr4_1:25559029-25559048 | Msa0541580:intron | 50.0% | |
| TGCAGCCATAGCAAAGGAGA+AGG | - | chr4_1:25560046-25560065 | Msa0541580:intron | 50.0% | |
| ACCCATAGTAGAAGTTGCCC+CGG | + | chr4_1:25560264-25560283 | None:intergenic | 50.0% | |
| GAGGTGGATACTACTGCTTC+AGG | - | chr4_1:25561037-25561056 | Msa0541580:intron | 50.0% | |
| CTAGACAACTACGGCATGGT+TGG | - | chr4_1:25561132-25561151 | Msa0541580:CDS | 50.0% | |
| GTTGGGGAGGTGAAATTCCA+TGG | - | chr4_1:25562371-25562390 | Msa0541580:intron | 50.0% | |
| GGCGCAACAGTTTGTACTTC+AGG | + | chr4_1:25562481-25562500 | None:intergenic | 50.0% | |
| GAAGCTGACCAATCAGGTGA+TGG | - | chr4_1:25562515-25562534 | Msa0541580:intron | 50.0% | |
| GGGTGAAGCAAGCAAGAAAC+AGG | - | chr4_1:25562657-25562676 | Msa0541580:intron | 50.0% | |
| AATAATATACCCGCGGCCAC+AGG | - | chr4_1:25563011-25563030 | Msa0541580:five_prime_UTR | 50.0% | |
| CCTCCGGAACATGGTAGAGT+CGG | + | chr4_1:25557202-25557221 | None:intergenic | 55.0% | |
| GTGCGTATACCTCCGGAACA+TGG | + | chr4_1:25557211-25557230 | None:intergenic | 55.0% | |
| GGCTCTTGGTCTGAATGCCA+GGG | + | chr4_1:25558693-25558712 | None:intergenic | 55.0% | |
| AGGCTCTTGGTCTGAATGCC+AGG | + | chr4_1:25558694-25558713 | None:intergenic | 55.0% | |
| ACAACCACCTACCCTCCTTG+AGG | - | chr4_1:25558816-25558835 | Msa0541580:intron | 55.0% | |
| TCGGAAGGAACCGCTCCTAT+TGG | - | chr4_1:25558859-25558878 | Msa0541580:intron | 55.0% | |
| CGGAAGGAACCGCTCCTATT+GGG | - | chr4_1:25558860-25558879 | Msa0541580:intron | 55.0% | |
| CTCGGTAAGCCCAATAGGAG+CGG | + | chr4_1:25558872-25558891 | None:intergenic | 55.0% | |
| GGCATTTAGTGGTGCAACGG+AGG | - | chr4_1:25559016-25559035 | Msa0541580:intron | 55.0% | |
| CGTACAAGCCATCCATGCTG+CGG | - | chr4_1:25559088-25559107 | Msa0541580:intron | 55.0% | |
| ! | CCTTTTCTCCGCAGCATGGA+TGG | + | chr4_1:25559099-25559118 | None:intergenic | 55.0% |
| CCATCCATGCTGCGGAGAAA+AGG | - | chr4_1:25559096-25559115 | Msa0541580:intron | 55.0% | |
| ! | CTTGCCTTTTCTCCGCAGCA+TGG | + | chr4_1:25559103-25559122 | None:intergenic | 55.0% |
| GCGAGTAGGCTTAGCATTCG+TGG | - | chr4_1:25559192-25559211 | Msa0541580:intron | 55.0% | |
| GGCTGCCTTCTCCTTTGCTA+TGG | + | chr4_1:25560054-25560073 | None:intergenic | 55.0% | |
| AGCCGGGGCAACTTCTACTA+TGG | - | chr4_1:25560259-25560278 | Msa0541580:intron | 55.0% | |
| GCCGGGGCAACTTCTACTAT+GGG | - | chr4_1:25560260-25560279 | Msa0541580:intron | 55.0% | |
| CAGTACAGCTGTACCAAGGC+TGG | - | chr4_1:25560931-25560950 | Msa0541580:intron | 55.0% | |
| CAAGGTGAACACACCAGCCT+TGG | + | chr4_1:25560947-25560966 | None:intergenic | 55.0% | |
| CAAGTGCAAGTGCTCTCTGC+AGG | + | chr4_1:25561588-25561607 | None:intergenic | 55.0% | |
| CACTTCGTCTTCTTCCCACC+AGG | - | chr4_1:25562230-25562249 | Msa0541580:CDS | 55.0% | |
| TTCGTCTTCTTCCCACCAGG+AGG | - | chr4_1:25562233-25562252 | Msa0541580:CDS | 55.0% | |
| TCGTCTTCTTCCCACCAGGA+GGG | - | chr4_1:25562234-25562253 | Msa0541580:CDS | 55.0% | |
| GGTTCCACCAAGGATGCCAA+CGG | - | chr4_1:25562810-25562829 | Msa0541580:intron | 55.0% | |
| GTTCCACCAAGGATGCCAAC+GGG | - | chr4_1:25562811-25562830 | Msa0541580:intron | 55.0% | |
| !! | ACACCACTGGCTTCGGTGAT+TGG | - | chr4_1:25562911-25562930 | Msa0541580:intron | 55.0% |
| GTTCCAATCACCGAAGCCAG+TGG | + | chr4_1:25562917-25562936 | None:intergenic | 55.0% | |
| AACCTTGTCTTGGTCGCCTG+TGG | + | chr4_1:25563030-25563049 | None:intergenic | 55.0% | |
| ACAGGCGACCAAGACAAGGT+TGG | - | chr4_1:25563029-25563048 | Msa0541580:five_prime_UTR | 55.0% | |
| ! | TTGGGGGTGCGTCACAACGA+AGG | - | chr4_1:25557120-25557139 | Msa0541580:three_prime_UTR | 60.0% |
| CCGACTCTACCATGTTCCGG+AGG | - | chr4_1:25557199-25557218 | Msa0541580:three_prime_UTR | 60.0% | |
| ! | TAAGGAGCTGAGGCACCACC+AGG | + | chr4_1:25557935-25557954 | None:intergenic | 60.0% |
| GCTGCGGAGAAAAGGCAAGC+TGG | - | chr4_1:25559104-25559123 | Msa0541580:intron | 60.0% | |
| CGTCTTCTTCCCACCAGGAG+GGG | - | chr4_1:25562235-25562254 | Msa0541580:CDS | 60.0% | |
| GTCTTCTTCCCACCAGGAGG+GGG | - | chr4_1:25562236-25562255 | Msa0541580:CDS | 60.0% | |
| ACATACCTCCCCCTCCTGGT+GGG | + | chr4_1:25562247-25562266 | None:intergenic | 60.0% | |
| AACATACCTCCCCCTCCTGG+TGG | + | chr4_1:25562248-25562267 | None:intergenic | 60.0% | |
| ! | ACCAGGAGGGGGAGGTATGT+TGG | - | chr4_1:25562247-25562266 | Msa0541580:CDS | 60.0% |
| ACTCCCGTTGGCATCCTTGG+TGG | + | chr4_1:25562817-25562836 | None:intergenic | 60.0% | |
| GCAACTCCCGTTGGCATCCT+TGG | + | chr4_1:25562820-25562839 | None:intergenic | 60.0% | |
| TGGGTCAAGGCAACTCCCGT+TGG | + | chr4_1:25562829-25562848 | None:intergenic | 60.0% | |
| GGAAAGCCGCCCGAGTCTCA+TGG | - | chr4_1:25557962-25557981 | Msa0541580:CDS | 65.0% | |
| TTCTTCCCACCAGGAGGGGG+AGG | - | chr4_1:25562239-25562258 | Msa0541580:CDS | 65.0% | |
| GCCAACATACCTCCCCCTCC+TGG | + | chr4_1:25562251-25562270 | None:intergenic | 65.0% | |
| GGCCACAGGCGACCAAGACA+AGG | - | chr4_1:25563025-25563044 | Msa0541580:five_prime_UTR | 65.0% | |
| TCTTGGTCGCCTGTGGCCGC+GGG | + | chr4_1:25563023-25563042 | None:intergenic | 70.0% | |
| GTCTTGGTCGCCTGTGGCCG+CGG | + | chr4_1:25563024-25563043 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 25557041 | 25563168 | 25557041 | ID=Msa0541580;Name=Msa0541580 |
| chr4_1 | mRNA | 25557041 | 25563168 | 25557041 | ID=Msa0541580-mRNA-1;Parent=Msa0541580;Name=Msa0541580-mRNA-1;_AED=0.06;_eAED=0.06;_QI=169|0.90|0.91|1|1|1|12|426|648 |
| chr4_1 | exon | 25557041 | 25557700 | 25557041 | ID=Msa0541580-mRNA-1:exon:6885;Parent=Msa0541580-mRNA-1 |
| chr4_1 | exon | 25557905 | 25558006 | 25557905 | ID=Msa0541580-mRNA-1:exon:6884;Parent=Msa0541580-mRNA-1 |
| chr4_1 | exon | 25558429 | 25558617 | 25558429 | ID=Msa0541580-mRNA-1:exon:6883;Parent=Msa0541580-mRNA-1 |
| chr4_1 | exon | 25558710 | 25558787 | 25558710 | ID=Msa0541580-mRNA-1:exon:6882;Parent=Msa0541580-mRNA-1 |
| chr4_1 | exon | 25560103 | 25560222 | 25560103 | ID=Msa0541580-mRNA-1:exon:6881;Parent=Msa0541580-mRNA-1 |
| chr4_1 | exon | 25560329 | 25560421 | 25560329 | ID=Msa0541580-mRNA-1:exon:6880;Parent=Msa0541580-mRNA-1 |
| chr4_1 | exon | 25560849 | 25560926 | 25560849 | ID=Msa0541580-mRNA-1:exon:6879;Parent=Msa0541580-mRNA-1 |
| chr4_1 | exon | 25561040 | 25561192 | 25561040 | ID=Msa0541580-mRNA-1:exon:6878;Parent=Msa0541580-mRNA-1 |
| chr4_1 | exon | 25561291 | 25561416 | 25561291 | ID=Msa0541580-mRNA-1:exon:6877;Parent=Msa0541580-mRNA-1 |
| chr4_1 | exon | 25561633 | 25562328 | 25561633 | ID=Msa0541580-mRNA-1:exon:6876;Parent=Msa0541580-mRNA-1 |
| chr4_1 | exon | 25562761 | 25562827 | 25562761 | ID=Msa0541580-mRNA-1:exon:6875;Parent=Msa0541580-mRNA-1 |
| chr4_1 | exon | 25562989 | 25563168 | 25562989 | ID=Msa0541580-mRNA-1:exon:6874;Parent=Msa0541580-mRNA-1 |
| chr4_1 | five_prime_UTR | 25563000 | 25563168 | 25563000 | ID=Msa0541580-mRNA-1:five_prime_utr;Parent=Msa0541580-mRNA-1 |
| chr4_1 | CDS | 25562989 | 25562999 | 25562989 | ID=Msa0541580-mRNA-1:cds;Parent=Msa0541580-mRNA-1 |
| chr4_1 | CDS | 25562761 | 25562827 | 25562761 | ID=Msa0541580-mRNA-1:cds;Parent=Msa0541580-mRNA-1 |
| chr4_1 | CDS | 25561633 | 25562328 | 25561633 | ID=Msa0541580-mRNA-1:cds;Parent=Msa0541580-mRNA-1 |
| chr4_1 | CDS | 25561291 | 25561416 | 25561291 | ID=Msa0541580-mRNA-1:cds;Parent=Msa0541580-mRNA-1 |
| chr4_1 | CDS | 25561040 | 25561192 | 25561040 | ID=Msa0541580-mRNA-1:cds;Parent=Msa0541580-mRNA-1 |
| chr4_1 | CDS | 25560849 | 25560926 | 25560849 | ID=Msa0541580-mRNA-1:cds;Parent=Msa0541580-mRNA-1 |
| chr4_1 | CDS | 25560329 | 25560421 | 25560329 | ID=Msa0541580-mRNA-1:cds;Parent=Msa0541580-mRNA-1 |
| chr4_1 | CDS | 25560103 | 25560222 | 25560103 | ID=Msa0541580-mRNA-1:cds;Parent=Msa0541580-mRNA-1 |
| chr4_1 | CDS | 25558710 | 25558787 | 25558710 | ID=Msa0541580-mRNA-1:cds;Parent=Msa0541580-mRNA-1 |
| chr4_1 | CDS | 25558429 | 25558617 | 25558429 | ID=Msa0541580-mRNA-1:cds;Parent=Msa0541580-mRNA-1 |
| chr4_1 | CDS | 25557905 | 25558006 | 25557905 | ID=Msa0541580-mRNA-1:cds;Parent=Msa0541580-mRNA-1 |
| chr4_1 | CDS | 25557467 | 25557700 | 25557467 | ID=Msa0541580-mRNA-1:cds;Parent=Msa0541580-mRNA-1 |
| chr4_1 | three_prime_UTR | 25557041 | 25557466 | 25557041 | ID=Msa0541580-mRNA-1:three_prime_utr;Parent=Msa0541580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
