AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1445690

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1445690 MtrunA17_Chr4g0040211 99.422 346 2 0 1 346 1 346 0.0 714
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1445690 AT4G22930.1 78.198 344 75 0 1 344 33 376 0.0 592
Msa1445690 AT4G22930.2 78.198 344 75 0 1 344 33 376 0.0 592

Find 103 sgRNAs with CRISPR-Local

Find 437 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAATCTTTGACTTGTTTC+TGG 0.085321 tig0031163:+21306 None:intergenic
TGCGGAAGCCTTCGAATTAA+AGG 0.196952 tig0031163:+23435 None:intergenic
CCTCACAGTGCAAAGCATTT+TGG 0.224625 tig0031163:-24758 Msa1445690:CDS
TATTCAGATGTGGCATTTAT+TGG 0.225798 tig0031163:-21163 Msa1445690:three_prime_UTR
CTCATAATATGCAACATTTC+GGG 0.269436 tig0031163:-21067 Msa1445690:three_prime_UTR
TGAGCAAGGTTTGCCATTAT+TGG 0.285780 tig0031163:-24257 Msa1445690:intron
TGTCATGAGAGGAGTGAAAT+TGG 0.300666 tig0031163:+24637 None:intergenic
AGTGATAGGTGGTTTCAAAT+TGG 0.303522 tig0031163:+24718 None:intergenic
ACTCATAATATGCAACATTT+CGG 0.312371 tig0031163:-21068 Msa1445690:three_prime_UTR
AGTAAACAAATTACCAATAA+TGG 0.320625 tig0031163:+24244 None:intergenic
TTTAATGGACCTGACTTCTA+TGG 0.320968 tig0031163:-21334 Msa1445690:CDS
TTAATCTTTGACTTGTTTCT+GGG 0.339416 tig0031163:+21307 None:intergenic
GATATTATTCCCATGTTTGC+CGG 0.347318 tig0031163:-21232 Msa1445690:CDS
GCAGAAGATGTGGTAGTGAT+AGG 0.356519 tig0031163:+24704 None:intergenic
ACCAGTTGGTACAAGCTATC+AGG 0.362028 tig0031163:+21094 None:intergenic
TCCACATGATAGGCGTAAAA+AGG 0.378745 tig0031163:-22487 Msa1445690:CDS
TTTGTAGAGTCTTGCAAAGA+AGG 0.398653 tig0031163:-23366 Msa1445690:intron
GCATATAGTGATAGAGCAAC+CGG 0.400997 tig0031163:+22429 None:intergenic
TTATTCTGTTCTTGAGGAAA+TGG 0.405095 tig0031163:-24281 Msa1445690:CDS
GTGATAGGTGGTTTCAAATT+GGG 0.415995 tig0031163:+24719 None:intergenic
AGTATGTTAATCTAGTTAGT+TGG 0.430882 tig0031163:-21140 Msa1445690:three_prime_UTR
ACCTGATAGCTTGTACCAAC+TGG 0.433973 tig0031163:-21095 Msa1445690:three_prime_UTR
CTGATAGTGCTCCACATGAT+AGG 0.434036 tig0031163:-22497 Msa1445690:CDS
CAAAATGCTTTGCACTGTGA+GGG 0.440873 tig0031163:+24759 None:intergenic
GGCTGGTGCACTTGACAAGC+TGG 0.441125 tig0031163:-21371 Msa1445690:CDS
ATCACGTTGCTGTAAAAGTT+AGG 0.441304 tig0031163:-27562 Msa1445690:five_prime_UTR
TAGGTTTCAGCTTAAATAGC+TGG 0.444422 tig0031163:-20987 Msa1445690:three_prime_UTR
CTTGCAAGTTGAATCTCATT+CGG 0.451170 tig0031163:+24590 None:intergenic
TATTGAGATTGTAATTTAAG+TGG 0.452365 tig0031163:-20963 Msa1445690:three_prime_UTR
GGAAGCATTGCTTATTTGAC+TGG 0.456676 tig0031163:-21194 Msa1445690:exon
GAAGGATGGCTTCGAAGATC+CGG 0.458151 tig0031163:+27375 None:intergenic
GAGTGTCTATCGTTTCCATT+TGG 0.458488 tig0031163:-21256 Msa1445690:CDS
TTAGTTGGAGTTGGTTACCT+TGG 0.459230 tig0031163:-21125 Msa1445690:three_prime_UTR
TTAATCTAGTTAGTTGGAGT+TGG 0.460803 tig0031163:-21134 Msa1445690:three_prime_UTR
AATCGCAATGCTTTGTTCCA+AGG 0.460976 tig0031163:-23208 Msa1445690:CDS
AAGTGTTTCACCGGCAAACA+TGG 0.467013 tig0031163:+21222 None:intergenic
ATTGAGATTGTAATTTAAGT+GGG 0.467812 tig0031163:-20962 Msa1445690:three_prime_UTR
AAGTCTTAGCATCTGCTACT+TGG 0.474592 tig0031163:+27350 None:intergenic
AACAGCAGAGACAGAAAGAA+TGG 0.480032 tig0031163:-24852 Msa1445690:exon
GTCTCTGCTGTTGCTTTCGA+CGG 0.487907 tig0031163:+24863 None:intergenic
AGATGAAGATGAAAATCATC+AGG 0.495760 tig0031163:+24812 None:intergenic
TTCCCATTCAAGTGTTTCAC+CGG 0.499971 tig0031163:+21213 None:intergenic
TCATACGCCTCAGCTGTTAC+CGG 0.500123 tig0031163:-27394 Msa1445690:five_prime_UTR
TGCCGGTGAAACACTTGAAT+GGG 0.503432 tig0031163:-21215 Msa1445690:CDS
GAGTTTGTTGTAGCTCCAGC+AGG 0.506473 tig0031163:+24337 None:intergenic
GAATCTGCTTGTGGATGTGC+TGG 0.507355 tig0031163:-22465 Msa1445690:CDS
TGCTGCAGAGGGTTCACCAT+CGG 0.508724 tig0031163:-24971 Msa1445690:five_prime_UTR
TTAAACTGAGGAAATCTCCT+TGG 0.508792 tig0031163:-21288 Msa1445690:CDS
CATAAAAGTCGTTTGAAACG+TGG 0.516340 tig0031163:-27519 Msa1445690:five_prime_UTR
TGTGAGGCTGCAAGCCACCT+TGG 0.516437 tig0031163:+23191 None:intergenic
CTATATAGTGTGTGCTGCAG+AGG 0.517356 tig0031163:-24983 Msa1445690:intron
TACAAATTTAACAGCATCCA+TGG 0.517829 tig0031163:+23383 None:intergenic
GGTGTGAAGTTGTATCCTGC+TGG 0.522096 tig0031163:-24352 Msa1445690:CDS
ATGGGAATAATATCTCCAAA+TGG 0.523399 tig0031163:+21241 None:intergenic
TTCGGGCGTATCAGAAATGC+GGG 0.523896 tig0031163:-21050 Msa1445690:three_prime_UTR
TCGAAGGCTTCCGCAATTGA+AGG 0.525030 tig0031163:-23427 Msa1445690:CDS
TTGCCGGTGAAACACTTGAA+TGG 0.530630 tig0031163:-21216 Msa1445690:CDS
ATAAAAGTCGTTTGAAACGT+GGG 0.532849 tig0031163:-27518 Msa1445690:five_prime_UTR
TGCTCTATCACTATATGCCA+AGG 0.536801 tig0031163:-22424 Msa1445690:CDS
AGCATCTGCTACTTGGAAGA+AGG 0.538184 tig0031163:+27357 None:intergenic
GGGCATTCAGAAATATGATC+AGG 0.540133 tig0031163:-20942 Msa1445690:three_prime_UTR
CTTGAGGAAATGGTTGAGCA+AGG 0.541121 tig0031163:-24271 Msa1445690:CDS
CTGGGGATACCATAGAAGTC+AGG 0.547025 tig0031163:+21325 None:intergenic
ATTGTTTCAGCTATCACTAG+TGG 0.552041 tig0031163:-22543 Msa1445690:CDS
CGCAATGCTTTGTTCCAAGG+TGG 0.554240 tig0031163:-23205 Msa1445690:CDS
AAATTGTTATTCTGTTCTTG+AGG 0.556275 tig0031163:-24287 Msa1445690:CDS
TTACGAAAACAGGGTGCCGA+TGG 0.565921 tig0031163:+24955 None:intergenic
TCCGCAATTGAAGGTTGTGA+TGG 0.566851 tig0031163:-23418 Msa1445690:CDS
CAGTATACATGACAGGTTCA+CGG 0.568492 tig0031163:-23525 Msa1445690:intron
CCAAAATGCTTTGCACTGTG+AGG 0.574508 tig0031163:+24758 None:intergenic
TATATAGTGTGTGCTGCAGA+GGG 0.575920 tig0031163:-24982 Msa1445690:intron
TGCTGGCATCTACAACTCCC+CGG 0.579653 tig0031163:-22448 Msa1445690:CDS
AGACACTCGGGTACTCTCCA+AGG 0.597244 tig0031163:+21271 None:intergenic
AGTGTTTCACCGGCAAACAT+GGG 0.600430 tig0031163:+21223 None:intergenic
ATATTATGAGTGTAACCAGT+TGG 0.601304 tig0031163:+21080 None:intergenic
AAAATGCTTTGCACTGTGAG+GGG 0.602141 tig0031163:+24760 None:intergenic
GTGGAGCACTATCAGTTCCA+AGG 0.602259 tig0031163:+22505 None:intergenic
TAATCTTTGACTTGTTTCTG+GGG 0.603480 tig0031163:+21308 None:intergenic
AGTGAGATCACAATAGTCGA+TGG 0.603638 tig0031163:+20780 None:intergenic
GGCAGTTGAAGCTTCTCTGT+CGG 0.607309 tig0031163:+24884 None:intergenic
GCTACAACAAACTCACAAGA+TGG 0.612227 tig0031163:-24328 Msa1445690:CDS
GAAGATGTGGTAGTGATAGG+TGG 0.615955 tig0031163:+24707 None:intergenic
GTTGCTGTAAAAGTTAGGAA+AGG 0.616677 tig0031163:-27557 Msa1445690:five_prime_UTR
GGTCTCTGCGTATTCAGATG+TGG 0.620264 tig0031163:-21173 Msa1445690:three_prime_UTR
GTGAGATAAAGTGTCATGAG+AGG 0.623350 tig0031163:+24626 None:intergenic
TCTGCTACTTGGAAGAAGGA+TGG 0.624494 tig0031163:+27361 None:intergenic
ATAAGAAATAGCAGAAGATG+TGG 0.624539 tig0031163:+24694 None:intergenic
CATATAGTGATAGAGCAACC+GGG 0.624630 tig0031163:+22430 None:intergenic
AAATGGAAACGATAGACACT+CGG 0.625624 tig0031163:+21258 None:intergenic
TTTCATCTTCATCTTCGCGA+CGG 0.628549 tig0031163:-24803 Msa1445690:CDS
CGAAGATCCGGTAACAGCTG+AGG 0.634375 tig0031163:+27387 None:intergenic
TCCATCACAACCTTCAATTG+CGG 0.639588 tig0031163:+23417 None:intergenic
CAACGCTGCAGAGTTGAGCA+AGG 0.655555 tig0031163:-24907 Msa1445690:five_prime_UTR
TTTCGGGCGTATCAGAAATG+CGG 0.658277 tig0031163:-21051 Msa1445690:three_prime_UTR
TACATGACAGGTTCACGGAG+AGG 0.662980 tig0031163:-23520 Msa1445690:intron
GCTATCAGGTTCTGTCACCA+AGG 0.666725 tig0031163:+21108 None:intergenic
AATGGAAACGATAGACACTC+GGG 0.667966 tig0031163:+21259 None:intergenic
ACGGGAAGACAGTAATTGTG+AGG 0.675653 tig0031163:+23175 None:intergenic
GATGGAGCATATTACTACCA+TGG 0.681818 tig0031163:-23400 Msa1445690:CDS
GTATAAATTATAAATAACAC+AGG 0.696700 tig0031163:-20804 Msa1445690:three_prime_UTR
ACAAGTCAAAGATTAAACTG+AGG 0.713629 tig0031163:-21300 Msa1445690:CDS
ATATAGTGATAGAGCAACCG+GGG 0.715068 tig0031163:+22431 None:intergenic
CGATTGAGAAGAATATGCTG+AGG 0.789742 tig0031163:+23226 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTAAATTATTTTTATTT+AGG - tig0031163:23905-23924 Msa1445690:intron 0.0%
!!! ATATTTTAGAAAATTATATC+AGG - tig0031163:22375-22394 Msa1445690:intron 10.0%
!!! TATTTTAGAAAATTATATCA+GGG - tig0031163:22376-22395 Msa1445690:intron 10.0%
!! AAAAAAAGAAACAAAAAATT+GGG + tig0031163:24206-24225 None:intergenic 10.0%
!! CTAATTATTATCTAATAACT+AGG + tig0031163:21359-21378 None:intergenic 15.0%
!!! TATCTGAAACTAAAATAAAA+TGG + tig0031163:22140-22159 None:intergenic 15.0%
!! AGAATATTAAAATCTGATAT+TGG + tig0031163:22350-22369 None:intergenic 15.0%
!! AAGTTTATCTTAAAAAAGAA+CGG - tig0031163:22623-22642 Msa1445690:intron 15.0%
!!! TAACTTTTGGTTTTTTAAAA+TGG - tig0031163:23211-23230 Msa1445690:CDS 15.0%
!!! AACTTTTGGTTTTTTAAAAT+GGG - tig0031163:23212-23231 Msa1445690:CDS 15.0%
!!! TTTTTTGGATTTAATGAAAT+TGG - tig0031163:23242-23261 Msa1445690:CDS 15.0%
!!! TTTTTGGATTTAATGAAATT+GGG - tig0031163:23243-23262 Msa1445690:CDS 15.0%
!! ATATAGATAAAAAAAAAACG+AGG + tig0031163:23379-23398 None:intergenic 15.0%
!! AAAAAAGAAACAAAAAATTG+GGG + tig0031163:24205-24224 None:intergenic 15.0%
!! CAAAAAAAGAAACAAAAAAT+TGG + tig0031163:24207-24226 None:intergenic 15.0%
!!! ATTTTTTGTTTCTTTTTTTG+TGG - tig0031163:24207-24226 Msa1445690:intron 15.0%
!!! TTTTTTGTTTCTTTTTTTGT+GGG - tig0031163:24208-24227 Msa1445690:intron 15.0%
!! AAAACATAATTCTATTACAA+AGG + tig0031163:24635-24654 None:intergenic 15.0%
!!! TTGTAATAGAATTATGTTTT+TGG - tig0031163:24635-24654 Msa1445690:CDS 15.0%
!!! TTATAAACAAATTCTTTTTC+AGG + tig0031163:25453-25472 None:intergenic 15.0%
!! GTTAAAATATTATTTCCAAA+AGG - tig0031163:26328-26347 Msa1445690:intron 15.0%
!!! AAATAGTAATAATAGTGTTT+TGG - tig0031163:26399-26418 Msa1445690:intron 15.0%
!!! TAATATTGTTTCTCTTTAAT+TGG + tig0031163:26473-26492 None:intergenic 15.0%
!! GTATAAATTATAAATAACAC+AGG - tig0031163:27572-27591 Msa1445690:five_prime_UTR 15.0%
!! ATTATCTAATAACTAGGTAT+AGG + tig0031163:21353-21372 None:intergenic 20.0%
!!! TAAACAAACTTATTTCTACT+AGG - tig0031163:21596-21615 Msa1445690:intron 20.0%
!!! ATACCTATATTTTGTACAAT+TGG - tig0031163:21729-21748 Msa1445690:intron 20.0%
!! ATAATAAAACGATACTTTAC+CGG + tig0031163:21799-21818 None:intergenic 20.0%
!! ATTGAATTGTAATTGTTGAA+CGG - tig0031163:21946-21965 Msa1445690:intron 20.0%
!! AAACTAAAATAAAATGGAAC+GGG + tig0031163:22134-22153 None:intergenic 20.0%
!! GAAACTAAAATAAAATGGAA+CGG + tig0031163:22135-22154 None:intergenic 20.0%
!!! AAGGTTTTATTCTTGAAAAA+TGG - tig0031163:22183-22202 Msa1445690:intron 20.0%
!!! AGGTTTTATTCTTGAAAAAT+GGG - tig0031163:22184-22203 Msa1445690:intron 20.0%
!! TACTTACAAAAAAAATGACT+CGG + tig0031163:22326-22345 None:intergenic 20.0%
!!! ACTAAACTACATTTTTAAAG+TGG + tig0031163:22532-22551 None:intergenic 20.0%
!! AAACCATATTAAAAGAAAAC+CGG - tig0031163:22557-22576 Msa1445690:intron 20.0%
!! ATAAAAAAAAAACGAGGTTA+AGG + tig0031163:23373-23392 None:intergenic 20.0%
!! AGTAAACAAATTACCAATAA+TGG + tig0031163:24135-24154 None:intergenic 20.0%
!!! TTTTTGTTTCTTTTTTTGTG+GGG - tig0031163:24209-24228 Msa1445690:intron 20.0%
!! AATTAAGTTAATTGTCCAAA+CGG + tig0031163:24259-24278 None:intergenic 20.0%
!! AATATAACTGCTTATGTATA+TGG - tig0031163:24280-24299 Msa1445690:CDS 20.0%
!!! GATTATTTGATTTTATCTAC+AGG + tig0031163:24470-24489 None:intergenic 20.0%
!!! ATTTTTATGCAACAGTATAA+TGG + tig0031163:24506-24525 None:intergenic 20.0%
!! TACAAAAATAGCAAATTATC+AGG + tig0031163:25105-25124 None:intergenic 20.0%
!!! GATAATTTGCTATTTTTGTA+AGG - tig0031163:25105-25124 Msa1445690:intron 20.0%
!! GAGTAATGATTTAAAAAGTA+CGG - tig0031163:25486-25505 Msa1445690:intron 20.0%
!!! ATTTTATAATATTCTTGTGG+TGG - tig0031163:25509-25528 Msa1445690:intron 20.0%
!! AAGTTTATATTAGATTACGT+AGG - tig0031163:25999-26018 Msa1445690:intron 20.0%
!!! AAAAATCTTAATCTAGCTTT+TGG - tig0031163:26711-26730 Msa1445690:intron 20.0%
!! TATTGAGATTGTAATTTAAG+TGG - tig0031163:27413-27432 Msa1445690:five_prime_UTR 20.0%
!! ATTGAGATTGTAATTTAAGT+GGG - tig0031163:27414-27433 Msa1445690:five_prime_UTR 20.0%
! TTACAATAACCAAACCTAAA+AGG + tig0031163:21202-21221 None:intergenic 25.0%
! ATAGTTTAACCAAGAATAAC+TGG - tig0031163:21276-21295 Msa1445690:CDS 25.0%
! TAGTTTAACCAAGAATAACT+GGG - tig0031163:21277-21296 Msa1445690:CDS 25.0%
!!! TTTTCAAGTCAGAACTAATT+AGG - tig0031163:21449-21468 Msa1445690:intron 25.0%
!!! GTTTTATTTCATGAATACAC+AGG - tig0031163:21499-21518 Msa1445690:intron 25.0%
!! TAGTTTGTACTACTAAGTAT+AGG - tig0031163:21657-21676 Msa1445690:intron 25.0%
! CTTCCAATTGTACAAAATAT+AGG + tig0031163:21735-21754 None:intergenic 25.0%
! AACCAAAATATGAAATTGTG+AGG - tig0031163:21766-21785 Msa1445690:intron 25.0%
!! AACCTCACAATTTCATATTT+TGG + tig0031163:21771-21790 None:intergenic 25.0%
! AGTATATACAACAGCTAAAA+CGG - tig0031163:21870-21889 Msa1445690:intron 25.0%
! AAATCTTGAACAGAAAGTAA+AGG + tig0031163:21920-21939 None:intergenic 25.0%
! CAAATACAAGTTTATGTAGA+TGG - tig0031163:21986-22005 Msa1445690:intron 25.0%
! AAACAATTGGTTAGTGATTA+TGG - tig0031163:22025-22044 Msa1445690:intron 25.0%
! TTAGTTAGTGACTGATATTA+TGG - tig0031163:22073-22092 Msa1445690:intron 25.0%
! TGATATTATGGTTGTAGTTA+GGG - tig0031163:22085-22104 Msa1445690:intron 25.0%
!!! TATTTTAGTTTCAGATAGAC+AGG - tig0031163:22143-22162 Msa1445690:intron 25.0%
! TTGAATCTTGCATTTATGTA+AGG - tig0031163:22276-22295 Msa1445690:intron 25.0%
! ACTTACAAAAAAAATGACTC+GGG + tig0031163:22325-22344 None:intergenic 25.0%
!!! ACTACATTTTTAAAGTGGAT+TGG + tig0031163:22527-22546 None:intergenic 25.0%
!! GGTTTTCTTTTAATATGGTT+TGG + tig0031163:22558-22577 None:intergenic 25.0%
!!! AAACCGGTTTTCTTTTAATA+TGG + tig0031163:22563-22582 None:intergenic 25.0%
! AACCATTTCACAATAAAAAC+CGG + tig0031163:22579-22598 None:intergenic 25.0%
!!! AATACTAGTTTTTCCTAGAT+TGG - tig0031163:22667-22686 Msa1445690:intron 25.0%
! GTAATATGAGAAATGAATGA+TGG - tig0031163:23117-23136 Msa1445690:intron 25.0%
!! AGAAATGAATGATGGAAATT+AGG - tig0031163:23125-23144 Msa1445690:intron 25.0%
!!! AAAATGGGTACAGTTTTTTT+TGG - tig0031163:23227-23246 Msa1445690:CDS 25.0%
!!! AACCTTTTTTTACGAAAACA+GGG + tig0031163:23433-23452 None:intergenic 25.0%
!! GAAAAAAGTGGATTTGTTTA+TGG - tig0031163:24003-24022 Msa1445690:intron 25.0%
!! AAATTGTTATTCTGTTCTTG+AGG - tig0031163:24089-24108 Msa1445690:intron 25.0%
! ATTAAGTTAATTGTCCAAAC+GGG + tig0031163:24258-24277 None:intergenic 25.0%
! ATATTTCCATAATCTCTCTA+AGG + tig0031163:24374-24393 None:intergenic 25.0%
! AATATGCTGAAAAAAGCTTA+CGG - tig0031163:24389-24408 Msa1445690:intron 25.0%
! AAAATGTATTTCATGCTCTA+TGG - tig0031163:24521-24540 Msa1445690:intron 25.0%
! GTTTGTAGATAATTTCATTG+TGG + tig0031163:24681-24700 None:intergenic 25.0%
!! AGGTATTGTAGTAAATTACT+TGG - tig0031163:25030-25049 Msa1445690:intron 25.0%
! GGTATTGTAGTAAATTACTT+GGG - tig0031163:25031-25050 Msa1445690:intron 25.0%
!!! TTTAGAGTTAAGAGAGTTTT+TGG - tig0031163:25273-25292 Msa1445690:intron 25.0%
!! TGGTTTAGATTTTCAAACAA+TGG - tig0031163:25293-25312 Msa1445690:intron 25.0%
! CATTCAATGAATCTGAAAAA+AGG + tig0031163:25378-25397 None:intergenic 25.0%
! ATAATATACACCAGATACAT+TGG - tig0031163:25415-25434 Msa1445690:intron 25.0%
!! TTTTAAATCATTACTCCCTT+CGG + tig0031163:25482-25501 None:intergenic 25.0%
!! CGGATTTTATAATATTCTTG+TGG - tig0031163:25506-25525 Msa1445690:intron 25.0%
! TAATTTCACAAATGTGCATA+TGG - tig0031163:26042-26061 Msa1445690:intron 25.0%
! AATTTCACAAATGTGCATAT+GGG - tig0031163:26043-26062 Msa1445690:intron 25.0%
! ATAAACTGCTTATTTGAGTA+TGG - tig0031163:26891-26910 Msa1445690:intron 25.0%
!!! TTAATCTTTGACTTGTTTCT+GGG + tig0031163:27072-27091 None:intergenic 25.0%
!!! TTTAATCTTTGACTTGTTTC+TGG + tig0031163:27073-27092 None:intergenic 25.0%
! AGTATGTTAATCTAGTTAGT+TGG - tig0031163:27236-27255 Msa1445690:intron 25.0%
! ACTCATAATATGCAACATTT+CGG - tig0031163:27308-27327 Msa1445690:intron 25.0%
!!! CTTTTATTTCTTCGAAAGTT+AGG - tig0031163:27370-27389 Msa1445690:five_prime_UTR 25.0%
! TTACTTGTGAAAAAGAAATG+AGG + tig0031163:27511-27530 None:intergenic 25.0%
!!! TCTTTTTCACAAGTAAATGA+TGG - tig0031163:27515-27534 Msa1445690:five_prime_UTR 25.0%
!!! CTTTTTCACAAGTAAATGAT+GGG - tig0031163:27516-27535 Msa1445690:five_prime_UTR 25.0%
! TCAAACGACTTTTATGGAAA+TGG + tig0031163:20853-20872 None:intergenic 30.0%
! ATAAAAGTCGTTTGAAACGT+GGG - tig0031163:20858-20877 Msa1445690:three_prime_UTR 30.0%
AGTAATGCGAATTGATACAT+GGG + tig0031163:21093-21112 None:intergenic 30.0%
TAGTAATGCGAATTGATACA+TGG + tig0031163:21094-21113 None:intergenic 30.0%
ACCTAAAAGGTAAAAAGGAA+CGG + tig0031163:21189-21208 None:intergenic 30.0%
!!! TCCTTTTTACCTTTTAGGTT+TGG - tig0031163:21190-21209 Msa1445690:exon 30.0%
ACCAAACCTAAAAGGTAAAA+AGG + tig0031163:21194-21213 None:intergenic 30.0%
! TCACATCGTTGATTAGAATT+TGG + tig0031163:21229-21248 None:intergenic 30.0%
TGGGAGAAGATAGATAATTA+GGG - tig0031163:21296-21315 Msa1445690:CDS 30.0%
! ATAGATAATTAGGGGCATAT+AGG - tig0031163:21305-21324 Msa1445690:CDS 30.0%
CTAATAACTAGGTATAGGTA+TGG + tig0031163:21348-21367 None:intergenic 30.0%
! GTTTGTTTAAAGTAGATAGC+AGG + tig0031163:21585-21604 None:intergenic 30.0%
TACCGACAGGTAAATAATAT+TGG - tig0031163:21830-21849 Msa1445690:intron 30.0%
ACCGACAGGTAAATAATATT+GGG - tig0031163:21831-21850 Msa1445690:intron 30.0%
ACCCAATATTATTTACCTGT+CGG + tig0031163:21835-21854 None:intergenic 30.0%
GTATATACTATTGAGTGTGA+GGG + tig0031163:21859-21878 None:intergenic 30.0%
TGTATATACTATTGAGTGTG+AGG + tig0031163:21860-21879 None:intergenic 30.0%
TTGTAATTGTTGAACGGTAT+TGG - tig0031163:21952-21971 Msa1445690:intron 30.0%
TTAGAGATCACACAAACAAT+TGG - tig0031163:22012-22031 Msa1445690:intron 30.0%
CTGATATTATGGTTGTAGTT+AGG - tig0031163:22084-22103 Msa1445690:intron 30.0%
AATGCAAGATTCAATTCTCA+GGG + tig0031163:22270-22289 None:intergenic 30.0%
AAATGCAAGATTCAATTCTC+AGG + tig0031163:22271-22290 None:intergenic 30.0%
!! AACCGGTTTTTATTGTGAAA+TGG - tig0031163:22574-22593 Msa1445690:intron 30.0%
AAAAAAGAACGGTTCATATG+TGG - tig0031163:22634-22653 Msa1445690:intron 30.0%
GAGAAATGTAAAACCAATCT+AGG + tig0031163:22683-22702 None:intergenic 30.0%
AAGAAGAAGAAGAAGAAGAA+TGG + tig0031163:22794-22813 None:intergenic 30.0%
GAATTGAAGAATGCAATGAA+TGG + tig0031163:22835-22854 None:intergenic 30.0%
! ACTGTTCAAACCATTGTTTT+GGG + tig0031163:22913-22932 None:intergenic 30.0%
!! TGTTATTGGTAGTGGTAATT+GGG - tig0031163:22965-22984 Msa1445690:intron 30.0%
TTATTGCTTCTAACACCATT+AGG - tig0031163:23006-23025 Msa1445690:intron 30.0%
ATCGAAATTGTTCATCCTAA+TGG + tig0031163:23024-23043 None:intergenic 30.0%
ATTAGGATGAACAATTTCGA+TGG - tig0031163:23023-23042 Msa1445690:intron 30.0%
ATGAATTTCACATTTCTCAG+AGG + tig0031163:23075-23094 None:intergenic 30.0%
TCATAGAAATCGTGTGAATT+TGG - tig0031163:23091-23110 Msa1445690:intron 30.0%
! TGAATGATGGAAATTAGGAA+TGG - tig0031163:23130-23149 Msa1445690:intron 30.0%
! GGAGAAATTAGGTTAACTTT+TGG - tig0031163:23198-23217 Msa1445690:CDS 30.0%
! CTGAACTGTTTTACAAAATC+CGG + tig0031163:23294-23313 None:intergenic 30.0%
!!! CAACCTTTTTTTACGAAAAC+AGG + tig0031163:23434-23453 None:intergenic 30.0%
AGATGAAGATGAAAATCATC+AGG + tig0031163:23567-23586 None:intergenic 30.0%
ATAAGAAATAGCAGAAGATG+TGG + tig0031163:23685-23704 None:intergenic 30.0%
CAAGTTGTGTAGTAGTTTAT+TGG + tig0031163:23959-23978 None:intergenic 30.0%
! TTTGCATTGACAGAAAAAAG+TGG - tig0031163:23991-24010 Msa1445690:intron 30.0%
TTATTCTGTTCTTGAGGAAA+TGG - tig0031163:24095-24114 Msa1445690:intron 30.0%
AGAAACAAAAAATTGGGGAA+GGG + tig0031163:24200-24219 None:intergenic 30.0%
AAGAAACAAAAAATTGGGGA+AGG + tig0031163:24201-24220 None:intergenic 30.0%
TTAAGTTAATTGTCCAAACG+GGG + tig0031163:24257-24276 None:intergenic 30.0%
TAAAGAAGGAAATGTGTCAA+TGG + tig0031163:24760-24779 None:intergenic 30.0%
!!! CAGAAGTTGATATTTTTGAC+CGG - tig0031163:24888-24907 Msa1445690:five_prime_UTR 30.0%
!!! AGAAGTTGATATTTTTGACC+GGG - tig0031163:24889-24908 Msa1445690:five_prime_UTR 30.0%
! TTTCAATAAAGACCTTTTCC+CGG + tig0031163:24910-24929 None:intergenic 30.0%
!!! TTTTAGAGCCTTTAATTCGA+AGG - tig0031163:24933-24952 Msa1445690:five_prime_UTR 30.0%
TACAAATTTAACAGCATCCA+TGG + tig0031163:24996-25015 None:intergenic 30.0%
AAGAATTGAACTACTTCTTC+TGG - tig0031163:25331-25350 Msa1445690:intron 30.0%
CATTGAATGATTGATGTATC+TGG - tig0031163:25389-25408 Msa1445690:intron 30.0%
CGTTAAATAACCAATGTATC+TGG + tig0031163:25428-25447 None:intergenic 30.0%
TTGTTTATAATAGTGACCGA+AGG - tig0031163:25463-25482 Msa1445690:intron 30.0%
TGTTTATAATAGTGACCGAA+GGG - tig0031163:25464-25483 Msa1445690:intron 30.0%
! AATGTCTTCAGTGCATTTTA+TGG - tig0031163:25594-25613 Msa1445690:intron 30.0%
! AAAGTCTGAAACTCTTCAAT+AGG + tig0031163:25684-25703 None:intergenic 30.0%
TGAAGAGTTTCAGACTTTAT+AGG - tig0031163:25686-25705 Msa1445690:intron 30.0%
!! ATTCCTTTTGTCCCTTATTT+AGG - tig0031163:25803-25822 Msa1445690:intron 30.0%
! TCTATCACTCACTCTTTTAT+TGG - tig0031163:26174-26193 Msa1445690:intron 30.0%
! CTATCACTCACTCTTTTATT+GGG - tig0031163:26175-26194 Msa1445690:intron 30.0%
!!! TATTTTAACGAAGAGTGCTA+TGG + tig0031163:26317-26336 None:intergenic 30.0%
TTGGAAAATCAACCATTGAT+AGG + tig0031163:26454-26473 None:intergenic 30.0%
CTTTCATCAAACAAATTCAC+TGG + tig0031163:26500-26519 None:intergenic 30.0%
! CAGTGAATTTGTTTGATGAA+AGG - tig0031163:26498-26517 Msa1445690:intron 30.0%
GAAAGGAAAAAGTTACATAG+AGG - tig0031163:26515-26534 Msa1445690:intron 30.0%
CTAGATTAAGCTAGATTTGT+TGG + tig0031163:26674-26693 None:intergenic 30.0%
!!! AATCTTAATCTAGCTTTTGG+TGG - tig0031163:26714-26733 Msa1445690:intron 30.0%
!! GAAGCTTTTACAAGCTTTAA+TGG - tig0031163:27027-27046 Msa1445690:intron 30.0%
!! TAATCTTTGACTTGTTTCTG+GGG + tig0031163:27071-27090 None:intergenic 30.0%
ACAAGTCAAAGATTAAACTG+AGG - tig0031163:27076-27095 Msa1445690:intron 30.0%
ATGGGAATAATATCTCCAAA+TGG + tig0031163:27138-27157 None:intergenic 30.0%
TATTCAGATGTGGCATTTAT+TGG - tig0031163:27213-27232 Msa1445690:intron 30.0%
TTAATCTAGTTAGTTGGAGT+TGG - tig0031163:27242-27261 Msa1445690:intron 30.0%
ATATTATGAGTGTAACCAGT+TGG + tig0031163:27299-27318 None:intergenic 30.0%
CTCATAATATGCAACATTTC+GGG - tig0031163:27309-27328 Msa1445690:intron 30.0%
ATCACGTTGCTGTAAAAGTT+AGG - tig0031163:20814-20833 Msa1445690:three_prime_UTR 35.0%
GTTGCTGTAAAAGTTAGGAA+AGG - tig0031163:20819-20838 Msa1445690:three_prime_UTR 35.0%
! CACGTTTCAAACGACTTTTA+TGG + tig0031163:20859-20878 None:intergenic 35.0%
! CATAAAAGTCGTTTGAAACG+TGG - tig0031163:20857-20876 Msa1445690:three_prime_UTR 35.0%
AAACTCGTAAAAACGGTGAA+TGG + tig0031163:20923-20942 None:intergenic 35.0%
GTGTGACAAACTCGTAAAAA+CGG + tig0031163:20930-20949 None:intergenic 35.0%
GAATTGATACATGGGGATTA+GGG + tig0031163:21085-21104 None:intergenic 35.0%
GTAATGCGAATTGATACATG+GGG + tig0031163:21092-21111 None:intergenic 35.0%
! GCTTTTACATAATCAGCTTC+TGG - tig0031163:21117-21136 Msa1445690:three_prime_UTR 35.0%
! TCCGTTCCTTTTTACCTTTT+AGG - tig0031163:21185-21204 Msa1445690:exon 35.0%
TATCTTCTCCCAGTTATTCT+TGG + tig0031163:21288-21307 None:intergenic 35.0%
CTGGGAGAAGATAGATAATT+AGG - tig0031163:21295-21314 Msa1445690:CDS 35.0%
GGGAGAAGATAGATAATTAG+GGG - tig0031163:21297-21316 Msa1445690:CDS 35.0%
CAATTCGAATTGCACTTGAT+TGG - tig0031163:21401-21420 Msa1445690:intron 35.0%
CTACTTGCCCATCAATTATA+AGG - tig0031163:21556-21575 Msa1445690:intron 35.0%
CAGGACACCTTATAATTGAT+GGG + tig0031163:21566-21585 None:intergenic 35.0%
ATATCTAATGCTTTACCGAC+AGG - tig0031163:21817-21836 Msa1445690:intron 35.0%
TCTTGAACAGAAAGTAAAGG+TGG + tig0031163:21917-21936 None:intergenic 35.0%
! TAATTGTTGAACGGTATTGG+TGG - tig0031163:21955-21974 Msa1445690:intron 35.0%
! TGATTATGGACTAACTGAAC+AGG - tig0031163:22039-22058 Msa1445690:intron 35.0%
! GATTATGGACTAACTGAACA+GGG - tig0031163:22040-22059 Msa1445690:intron 35.0%
! AAAAAATGACTCGGGTTACA+GGG + tig0031163:22317-22336 None:intergenic 35.0%
! AAAAAAATGACTCGGGTTAC+AGG + tig0031163:22318-22337 None:intergenic 35.0%
TTATAGACCACTTCTGTTGT+AGG - tig0031163:22409-22428 Msa1445690:intron 35.0%
!! AGTGGATTGGTTCACATATA+TGG + tig0031163:22514-22533 None:intergenic 35.0%
ATTGTGAAATGGTTCCAATC+TGG - tig0031163:22585-22604 Msa1445690:intron 35.0%
AAACCAGATTTGAACCAGAT+TGG + tig0031163:22602-22621 None:intergenic 35.0%
GAATAGAAAAGGGTCATTGA+GGG + tig0031163:22755-22774 None:intergenic 35.0%
TGGCGAAAAGGAATAGAAAA+GGG + tig0031163:22765-22784 None:intergenic 35.0%
ATGGCGAAAAGGAATAGAAA+AGG + tig0031163:22766-22785 None:intergenic 35.0%
AAGAAGAAGAATGGAAGCTA+TGG + tig0031163:22785-22804 None:intergenic 35.0%
ATTCTTTCTCTGTTCTGTCA+TGG - tig0031163:22851-22870 Msa1445690:intron 35.0%
! CACTGTTCAAACCATTGTTT+TGG + tig0031163:22914-22933 None:intergenic 35.0%
AGATCCAAAGTCACTGTTAT+TGG - tig0031163:22951-22970 Msa1445690:intron 35.0%
ACTACCAATAACAGTGACTT+TGG + tig0031163:22958-22977 None:intergenic 35.0%
AAAGTCACTGTTATTGGTAG+TGG - tig0031163:22957-22976 Msa1445690:intron 35.0%
!! CTGTTATTGGTAGTGGTAAT+TGG - tig0031163:22964-22983 Msa1445690:intron 35.0%
!! GTTATTGGTAGTGGTAATTG+GGG - tig0031163:22966-22985 Msa1445690:intron 35.0%
! ATGATGGAAATTAGGAATGG+CGG - tig0031163:23133-23152 Msa1445690:intron 35.0%
TGGATTTAATGAAATTGGGC+TGG - tig0031163:23247-23266 Msa1445690:CDS 35.0%
GGATTTAATGAAATTGGGCT+GGG - tig0031163:23248-23267 Msa1445690:CDS 35.0%
! CGGATTTTGTAAAACAGTTC+AGG - tig0031163:23292-23311 Msa1445690:intron 35.0%
TTAAATCTGACCCAGTTTAG+GGG + tig0031163:23338-23357 None:intergenic 35.0%
CTTAAATCTGACCCAGTTTA+GGG + tig0031163:23339-23358 None:intergenic 35.0%
AAAACGAGGTTAAGGAAGAA+TGG + tig0031163:23365-23384 None:intergenic 35.0%
! CACCCTGTTTTCGTAAAAAA+AGG - tig0031163:23428-23447 Msa1445690:CDS 35.0%
GTGATAGGTGGTTTCAAATT+GGG + tig0031163:23660-23679 None:intergenic 35.0%
AGTGATAGGTGGTTTCAAAT+TGG + tig0031163:23661-23680 None:intergenic 35.0%
! GGAGTGAAATTGGAAGTTTT+AGG + tig0031163:23732-23751 None:intergenic 35.0%
! CTTGCAAGTTGAATCTCATT+CGG + tig0031163:23789-23808 None:intergenic 35.0%
!!! GATGGTGTTACAGATCTTTT+TGG - tig0031163:24066-24085 Msa1445690:intron 35.0%
AAGCTACCTTAGAGAGATTA+TGG - tig0031163:24365-24384 Msa1445690:CDS 35.0%
AGTGAATCAGTATACATGAC+AGG - tig0031163:24844-24863 Msa1445690:exon 35.0%
CGGTCAAAAATATCAACTTC+TGG + tig0031163:24890-24909 None:intergenic 35.0%
!! TGATATTTTTGACCGGGAAA+AGG - tig0031163:24895-24914 Msa1445690:five_prime_UTR 35.0%
TTTGTAGAGTCTTGCAAAGA+AGG - tig0031163:25010-25029 Msa1445690:intron 35.0%
TGCGGTACAGTACAATAAAT+TGG + tig0031163:25069-25088 None:intergenic 35.0%
! TCAGGATGATTTTACAACTG+CGG + tig0031163:25087-25106 None:intergenic 35.0%
! CTCTGAAAAGTAACATACTG+TGG + tig0031163:25242-25261 None:intergenic 35.0%
GCTGTGCTAATTCTTAAGTT+TGG - tig0031163:25708-25727 Msa1445690:intron 35.0%
TAAGGGACAAAAGGAATTCA+TGG + tig0031163:25800-25819 None:intergenic 35.0%
TGTCCTAAATAAGGGACAAA+AGG + tig0031163:25809-25828 None:intergenic 35.0%
!! TTTTGTCCCTTATTTAGGAC+AGG - tig0031163:25808-25827 Msa1445690:intron 35.0%
CAATAGCCTGTCCTAAATAA+GGG + tig0031163:25817-25836 None:intergenic 35.0%
ACAATAGCCTGTCCTAAATA+AGG + tig0031163:25818-25837 None:intergenic 35.0%
ATTGTTTCAGCTATCACTAG+TGG - tig0031163:25833-25852 Msa1445690:intron 35.0%
!! ATATGCCAAGGTTTTTGAAG+AGG - tig0031163:25964-25983 Msa1445690:intron 35.0%
TGTTACCTCTTCAAAAACCT+TGG + tig0031163:25972-25991 None:intergenic 35.0%
TTATTGGGTGAAAACCATGT+GGG + tig0031163:26256-26275 None:intergenic 35.0%
! TTTTCACCCAATAAGAGAGT+GGG - tig0031163:26262-26281 Msa1445690:intron 35.0%
CTAATACCCACTCTCTTATT+GGG + tig0031163:26271-26290 None:intergenic 35.0%
TCTAATACCCACTCTCTTAT+TGG + tig0031163:26272-26291 None:intergenic 35.0%
! TGCTTATTCTGCAAACCTTT+TGG + tig0031163:26346-26365 None:intergenic 35.0%
TATTCACATGCATCTCTGTT+AGG - tig0031163:26426-26445 Msa1445690:intron 35.0%
TAGAGAAAGCTCAAGTTTGA+GGG + tig0031163:26551-26570 None:intergenic 35.0%
TAATCTAGCTATTCACCAGT+TGG - tig0031163:26594-26613 Msa1445690:intron 35.0%
! TTTTGTTCCGACTAATAGAG+AGG - tig0031163:26822-26841 Msa1445690:intron 35.0%
AGAGAAACCTCTCTATTAGT+CGG + tig0031163:26832-26851 None:intergenic 35.0%
ACACACATCAGAGAATTGTT+AGG + tig0031163:26860-26879 None:intergenic 35.0%
ACTGCTTATTTGAGTATGGA+TGG - tig0031163:26895-26914 Msa1445690:intron 35.0%
ATGTCTTGTGAAATTGTTGC+CGG - tig0031163:26976-26995 Msa1445690:intron 35.0%
! TTTAATGGACCTGACTTCTA+TGG - tig0031163:27042-27061 Msa1445690:intron 35.0%
TTAAACTGAGGAAATCTCCT+TGG - tig0031163:27088-27107 Msa1445690:intron 35.0%
AAATGGAAACGATAGACACT+CGG + tig0031163:27121-27140 None:intergenic 35.0%
GATATTATTCCCATGTTTGC+CGG - tig0031163:27144-27163 Msa1445690:intron 35.0%
TAGGTTTCAGCTTAAATAGC+TGG - tig0031163:27389-27408 Msa1445690:five_prime_UTR 35.0%
AAGTCTTAGCATCTGCTACT+TGG + tig0031163:21029-21048 None:intergenic 40.0%
CGAATTGATACATGGGGATT+AGG + tig0031163:21086-21105 None:intergenic 40.0%
GCAGGACACCTTATAATTGA+TGG + tig0031163:21567-21586 None:intergenic 40.0%
GGAACACACATAGATCATCT+TGG + tig0031163:21896-21915 None:intergenic 40.0%
TGGGTTCAAGACTTTCTTTC+TGG - tig0031163:22203-22222 Msa1445690:intron 40.0%
TGTTCGTTTGCAATACCTGT+TGG - tig0031163:22433-22452 Msa1445690:CDS 40.0%
GTTCGTTTGCAATACCTGTT+GGG - tig0031163:22434-22453 Msa1445690:CDS 40.0%
TTCGTTTGCAATACCTGTTG+GGG - tig0031163:22435-22454 Msa1445690:CDS 40.0%
! AGTTAACCACACAAAAGCGT+AGG + tig0031163:22467-22486 None:intergenic 40.0%
! TACGCTTTTGTGTGGTTAAC+TGG - tig0031163:22466-22485 Msa1445690:CDS 40.0%
! ACGCTTTTGTGTGGTTAACT+GGG - tig0031163:22467-22486 Msa1445690:CDS 40.0%
! GTTCCAATCTGGTTCAAATC+TGG - tig0031163:22596-22615 Msa1445690:intron 40.0%
GGAATAGAAAAGGGTCATTG+AGG + tig0031163:22756-22775 None:intergenic 40.0%
GAAATTGCGTCCCAAAACAA+TGG - tig0031163:22900-22919 Msa1445690:intron 40.0%
CGACTGCAATTGGAGAAATT+AGG - tig0031163:23187-23206 Msa1445690:CDS 40.0%
! TTTAATGAAATTGGGCTGGG+TGG - tig0031163:23251-23270 Msa1445690:CDS 40.0%
! TTAATGAAATTGGGCTGGGT+GGG - tig0031163:23252-23271 Msa1445690:CDS 40.0%
TTAGGGGTCTGCAAAAAAAC+TGG + tig0031163:23322-23341 None:intergenic 40.0%
!!! TTTTTTGCAGACCCCTAAAC+TGG - tig0031163:23324-23343 Msa1445690:intron 40.0%
! TTTTTGCAGACCCCTAAACT+GGG - tig0031163:23325-23344 Msa1445690:intron 40.0%
GCTTAAATCTGACCCAGTTT+AGG + tig0031163:23340-23359 None:intergenic 40.0%
TATATAGTGTGTGCTGCAGA+GGG - tig0031163:23394-23413 Msa1445690:CDS 40.0%
AACAGCAGAGACAGAAAGAA+TGG - tig0031163:23524-23543 Msa1445690:intron 40.0%
TTTCATCTTCATCTTCGCGA+CGG - tig0031163:23573-23592 Msa1445690:intron 40.0%
AAAATGCTTTGCACTGTGAG+GGG + tig0031163:23619-23638 None:intergenic 40.0%
CAAAATGCTTTGCACTGTGA+GGG + tig0031163:23620-23639 None:intergenic 40.0%
!! ACAGTGCAAAGCATTTTGGA+AGG - tig0031163:23622-23641 Msa1445690:intron 40.0%
!! CAGTGCAAAGCATTTTGGAA+GGG - tig0031163:23623-23642 Msa1445690:intron 40.0%
TGTCATGAGAGGAGTGAAAT+TGG + tig0031163:23742-23761 None:intergenic 40.0%
! GTGAGATAAAGTGTCATGAG+AGG + tig0031163:23753-23772 None:intergenic 40.0%
GCTACAACAAACTCACAAGA+TGG - tig0031163:24048-24067 Msa1445690:intron 40.0%
TGAGCAAGGTTTGCCATTAT+TGG - tig0031163:24119-24138 Msa1445690:intron 40.0%
!! TAATGTTCTAAAGCCCCGTT+TGG - tig0031163:24241-24260 Msa1445690:intron 40.0%
GAGCTTATGAGAACAGCTTA+TGG + tig0031163:24420-24439 None:intergenic 40.0%
ATAGTTGACAATGAGCCAAG+TGG - tig0031163:24710-24729 Msa1445690:CDS 40.0%
CAGTATACATGACAGGTTCA+CGG - tig0031163:24851-24870 Msa1445690:exon 40.0%
TCCATCACAACCTTCAATTG+CGG + tig0031163:24962-24981 None:intergenic 40.0%
GATGGAGCATATTACTACCA+TGG - tig0031163:24976-24995 Msa1445690:five_prime_UTR 40.0%
CGATTGAGAAGAATATGCTG+AGG + tig0031163:25153-25172 None:intergenic 40.0%
! AATCGCAATGCTTTGTTCCA+AGG - tig0031163:25168-25187 Msa1445690:intron 40.0%
! TGGATCTCTCTTTTAAGCAC+GGG + tig0031163:25222-25241 None:intergenic 40.0%
! GTGGATCTCTCTTTTAAGCA+CGG + tig0031163:25223-25242 None:intergenic 40.0%
! TGATCTGACTTGCATGATGA+AGG - tig0031163:25566-25585 Msa1445690:intron 40.0%
TTAGACAAAACCGCATCTCT+TGG - tig0031163:25766-25785 Msa1445690:intron 40.0%
GGTTAGATAACCAAGAGATG+CGG + tig0031163:25779-25798 None:intergenic 40.0%
! GGAAGTAGACGATTTTTCCT+TGG - tig0031163:25854-25873 Msa1445690:intron 40.0%
TCCACATGATAGGCGTAAAA+AGG - tig0031163:25889-25908 Msa1445690:intron 40.0%
! TCCTTTTTACGCCTATCATG+TGG + tig0031163:25893-25912 None:intergenic 40.0%
CGTAAAAAGGAATCTGCTTG+TGG - tig0031163:25902-25921 Msa1445690:intron 40.0%
ATATAGTGATAGAGCAACCG+GGG + tig0031163:25948-25967 None:intergenic 40.0%
CATATAGTGATAGAGCAACC+GGG + tig0031163:25949-25968 None:intergenic 40.0%
GCATATAGTGATAGAGCAAC+CGG + tig0031163:25950-25969 None:intergenic 40.0%
TGCTCTATCACTATATGCCA+AGG - tig0031163:25952-25971 Msa1445690:intron 40.0%
TCACAAATGTGCATATGGGT+AGG - tig0031163:26047-26066 Msa1445690:intron 40.0%
! TCACTCACTCTTTTATTGGG+TGG - tig0031163:26178-26197 Msa1445690:intron 40.0%
TAAAGTGGTGAGATCCACAT+GGG + tig0031163:26206-26225 None:intergenic 40.0%
ATAAAGTGGTGAGATCCACA+TGG + tig0031163:26207-26226 None:intergenic 40.0%
TGGATCTCACCACTTTATGT+GGG - tig0031163:26209-26228 Msa1445690:intron 40.0%
CTTATTGGGTGAAAACCATG+TGG + tig0031163:26257-26276 None:intergenic 40.0%
! GTTTTCACCCAATAAGAGAG+TGG - tig0031163:26261-26280 Msa1445690:intron 40.0%
CTCTGTTAGGAACCTATCAA+TGG - tig0031163:26439-26458 Msa1445690:intron 40.0%
AGAGAAAGCTCAAGTTTGAG+GGG + tig0031163:26550-26569 None:intergenic 40.0%
CTAGAGAAAGCTCAAGTTTG+AGG + tig0031163:26552-26571 None:intergenic 40.0%
AGTTCACTGAACTGTTATGG+CGG + tig0031163:26793-26812 None:intergenic 40.0%
ACCAGTTCACTGAACTGTTA+TGG + tig0031163:26796-26815 None:intergenic 40.0%
TGAAATTGTTGCCGGTGTTT+AGG - tig0031163:26984-27003 Msa1445690:intron 40.0%
AATGGAAACGATAGACACTC+GGG + tig0031163:27120-27139 None:intergenic 40.0%
GAGTGTCTATCGTTTCCATT+TGG - tig0031163:27120-27139 Msa1445690:intron 40.0%
TTCCCATTCAAGTGTTTCAC+CGG + tig0031163:27166-27185 None:intergenic 40.0%
!! GGAAGCATTGCTTATTTGAC+TGG - tig0031163:27182-27201 Msa1445690:intron 40.0%
! TTAGTTGGAGTTGGTTACCT+TGG - tig0031163:27251-27270 Msa1445690:intron 40.0%
GGGCATTCAGAAATATGATC+AGG - tig0031163:27434-27453 Msa1445690:five_prime_UTR 40.0%
! TCTGCTACTTGGAAGAAGGA+TGG + tig0031163:21018-21037 None:intergenic 45.0%
! AGCATCTGCTACTTGGAAGA+AGG + tig0031163:21022-21041 None:intergenic 45.0%
TGATACATGGGGATTAGGGA+GGG + tig0031163:21081-21100 None:intergenic 45.0%
TTGATACATGGGGATTAGGG+AGG + tig0031163:21082-21101 None:intergenic 45.0%
!!! ATCAGCTTCTGGTTTTCGCT+AGG - tig0031163:21128-21147 Msa1445690:three_prime_UTR 45.0%
! TTTTCGCTAGGTTGTGCTTG+TGG - tig0031163:21140-21159 Msa1445690:three_prime_UTR 45.0%
! TAGGGGCATATAGGCAGAAT+TGG - tig0031163:21314-21333 Msa1445690:CDS 45.0%
GAAATTGTGAGGTTCAGCTC+CGG - tig0031163:21777-21796 Msa1445690:intron 45.0%
CGAACAACCTACAACAGAAG+TGG + tig0031163:22419-22438 None:intergenic 45.0%
! CTGATTCCTACGCTTTTGTG+TGG - tig0031163:22458-22477 Msa1445690:CDS 45.0%
TGTGTGGTTAACTGGGACTA+AGG - tig0031163:22474-22493 Msa1445690:CDS 45.0%
GTGTGGTTAACTGGGACTAA+GGG - tig0031163:22475-22494 Msa1445690:CDS 45.0%
GGAGAAGACAGTCACAAGTT+TGG + tig0031163:22731-22750 None:intergenic 45.0%
TAGAAAAGGGTCATTGAGGG+TGG + tig0031163:22752-22771 None:intergenic 45.0%
GAATGGAAGCTATGGCGAAA+AGG + tig0031163:22777-22796 None:intergenic 45.0%
ACGAGGTTAAGGAAGAATGG+AGG + tig0031163:23362-23381 None:intergenic 45.0%
CTATATAGTGTGTGCTGCAG+AGG - tig0031163:23393-23412 Msa1445690:CDS 45.0%
CCAAAATGCTTTGCACTGTG+AGG + tig0031163:23621-23640 None:intergenic 45.0%
!! CCTCACAGTGCAAAGCATTT+TGG - tig0031163:23618-23637 Msa1445690:intron 45.0%
! GAAGATGTGGTAGTGATAGG+TGG + tig0031163:23672-23691 None:intergenic 45.0%
! GCAGAAGATGTGGTAGTGAT+AGG + tig0031163:23675-23694 None:intergenic 45.0%
CTTGAGGAAATGGTTGAGCA+AGG - tig0031163:24105-24124 Msa1445690:intron 45.0%
AATGAGCCAAGTGGTTCCTA+TGG - tig0031163:24719-24738 Msa1445690:CDS 45.0%
ATGTGTCAATGGACCACACT+TGG + tig0031163:24749-24768 None:intergenic 45.0%
TGCGGAAGCCTTCGAATTAA+AGG + tig0031163:24944-24963 None:intergenic 45.0%
TCCGCAATTGAAGGTTGTGA+TGG - tig0031163:24958-24977 Msa1445690:five_prime_UTR 45.0%
ACGGGAAGACAGTAATTGTG+AGG + tig0031163:25204-25223 None:intergenic 45.0%
! CTGATAGTGCTCCACATGAT+AGG - tig0031163:25879-25898 Msa1445690:intron 45.0%
TGCATATGGGTAGGTTTCAG+AGG - tig0031163:26056-26075 Msa1445690:intron 45.0%
GCATATGGGTAGGTTTCAGA+GGG - tig0031163:26057-26076 Msa1445690:intron 45.0%
TTTATTGGGTGGAACCCATG+TGG - tig0031163:26189-26208 Msa1445690:intron 45.0%
GTGGATCTCACCACTTTATG+TGG - tig0031163:26208-26227 Msa1445690:intron 45.0%
GAAATGGCTCCCACATAAAG+TGG + tig0031163:26221-26240 None:intergenic 45.0%
! TGGGTCTCACACTTTGGAAA+TGG + tig0031163:26237-26256 None:intergenic 45.0%
! GGTGAATAGCTTGTACCAAC+TGG + tig0031163:26612-26631 None:intergenic 45.0%
GGTACAAGCTATTCACCAGT+TGG - tig0031163:26615-26634 Msa1445690:intron 45.0%
! CAGTTCAGTCTTGTACCAAC+TGG + tig0031163:26633-26652 None:intergenic 45.0%
GGTACAAGACTGAACTGAAC+TGG - tig0031163:26636-26655 Msa1445690:intron 45.0%
!! CTAGCTTTTGGTGGAATCCT+TGG - tig0031163:26723-26742 Msa1445690:intron 45.0%
TTCAGTTCAGTCTTGAGCCA+AGG + tig0031163:26743-26762 None:intergenic 45.0%
!! ACTGTTATGGCGGTTTGGTT+TGG + tig0031163:26783-26802 None:intergenic 45.0%
ACTGAACTGTTATGGCGGTT+TGG + tig0031163:26788-26807 None:intergenic 45.0%
GCCATAACAGTTCAGTGAAC+TGG - tig0031163:26792-26811 Msa1445690:intron 45.0%
AGTGTTTCACCGGCAAACAT+GGG + tig0031163:27156-27175 None:intergenic 45.0%
AAGTGTTTCACCGGCAAACA+TGG + tig0031163:27157-27176 None:intergenic 45.0%
TTGCCGGTGAAACACTTGAA+TGG - tig0031163:27160-27179 Msa1445690:intron 45.0%
TGCCGGTGAAACACTTGAAT+GGG - tig0031163:27161-27180 Msa1445690:intron 45.0%
! ACCTGATAGCTTGTACCAAC+TGG - tig0031163:27281-27300 Msa1445690:intron 45.0%
! ACCAGTTGGTACAAGCTATC+AGG + tig0031163:27285-27304 None:intergenic 45.0%
TTTCGGGCGTATCAGAAATG+CGG - tig0031163:27325-27344 Msa1445690:intron 45.0%
!! AAAATTAAATTAAAATTTGA+GGG + tig0031163:23847-23866 None:intergenic 5.0%
!! AAAAATTAAATTAAAATTTG+AGG + tig0031163:23848-23867 None:intergenic 5.0%
TCATACGCCTCAGCTGTTAC+CGG - tig0031163:20982-21001 Msa1445690:three_prime_UTR 50.0%
GAAGGATGGCTTCGAAGATC+CGG + tig0031163:21004-21023 None:intergenic 50.0%
GCAGTAGTTCGAGACTCACA+GGG + tig0031163:21058-21077 None:intergenic 50.0%
GATACATGGGGATTAGGGAG+GGG + tig0031163:21080-21099 None:intergenic 50.0%
TTCTGTCATGGCTCCAGCAT+TGG - tig0031163:22863-22882 Msa1445690:intron 50.0%
! GCTCCAGCATTGGAAATCCA+AGG - tig0031163:22873-22892 Msa1445690:intron 50.0%
CCTCCTTGGATTTCCAATGC+TGG + tig0031163:22879-22898 None:intergenic 50.0%
! CCAGCATTGGAAATCCAAGG+AGG - tig0031163:22876-22895 Msa1445690:intron 50.0%
! GGGCTTCAAGTTAGGTTCAC+CGG - tig0031163:23272-23291 Msa1445690:intron 50.0%
!! TTACGAAAACAGGGTGCCGA+TGG + tig0031163:23424-23443 None:intergenic 50.0%
GGCAGTTGAAGCTTCTCTGT+CGG + tig0031163:23495-23514 None:intergenic 50.0%
!! GTCTCTGCTGTTGCTTTCGA+CGG + tig0031163:23516-23535 None:intergenic 50.0%
GGTGTGAAGTTGTATCCTGC+TGG - tig0031163:24024-24043 Msa1445690:intron 50.0%
!! GAGTTTGTTGTAGCTCCAGC+AGG + tig0031163:24042-24061 None:intergenic 50.0%
TTCCTATGGCAAGCCAAGTG+TGG - tig0031163:24733-24752 Msa1445690:CDS 50.0%
TACATGACAGGTTCACGGAG+AGG - tig0031163:24856-24875 Msa1445690:five_prime_UTR 50.0%
TCGAAGGCTTCCGCAATTGA+AGG - tig0031163:24949-24968 Msa1445690:five_prime_UTR 50.0%
! CGCAATGCTTTGTTCCAAGG+TGG - tig0031163:25171-25190 Msa1445690:intron 50.0%
! GTGGAGCACTATCAGTTCCA+AGG + tig0031163:25874-25893 None:intergenic 50.0%
GAATCTGCTTGTGGATGTGC+TGG - tig0031163:25911-25930 Msa1445690:intron 50.0%
TCCAAAGTGTGAGACCCACA+TGG - tig0031163:26239-26258 Msa1445690:intron 50.0%
ACCATGTGGGTCTCACACTT+TGG + tig0031163:26243-26262 None:intergenic 50.0%
ATTGTTGCCGGTGTTTAGGC+TGG - tig0031163:26988-27007 Msa1445690:intron 50.0%
AAGTGCACCAGCCTAAACAC+CGG + tig0031163:26998-27017 None:intergenic 50.0%
CTGGGGATACCATAGAAGTC+AGG + tig0031163:27054-27073 None:intergenic 50.0%
GGTCTCTGCGTATTCAGATG+TGG - tig0031163:27203-27222 Msa1445690:intron 50.0%
GCTATCAGGTTCTGTCACCA+AGG + tig0031163:27271-27290 None:intergenic 50.0%
TTCGGGCGTATCAGAAATGC+GGG - tig0031163:27326-27345 Msa1445690:intron 50.0%
CGAAGATCCGGTAACAGCTG+AGG + tig0031163:20992-21011 None:intergenic 55.0%
GGCAGTAGTTCGAGACTCAC+AGG + tig0031163:21059-21078 None:intergenic 55.0%
!! ACTGGGACTAAGGGTGTTCG+TGG - tig0031163:22484-22503 Msa1445690:CDS 55.0%
GGGACGCAATTTCTCCTCCT+TGG + tig0031163:22893-22912 None:intergenic 55.0%
TGCAGTCGCGACTCAACGTA+TGG + tig0031163:23175-23194 None:intergenic 55.0%
CGTTGAGTCGCGACTGCAAT+TGG - tig0031163:23177-23196 Msa1445690:CDS 55.0%
TGCTGCAGAGGGTTCACCAT+CGG - tig0031163:23405-23424 Msa1445690:CDS 55.0%
CAACGCTGCAGAGTTGAGCA+AGG - tig0031163:23469-23488 Msa1445690:CDS 55.0%
GGCTTGCCATAGGAACCACT+TGG + tig0031163:24728-24747 None:intergenic 55.0%
!! GACCACACTTGGCTTGCCAT+AGG + tig0031163:24738-24757 None:intergenic 55.0%
TGCTGGCATCTACAACTCCC+CGG - tig0031163:25928-25947 Msa1445690:intron 55.0%
AGACACTCGGGTACTCTCCA+AGG + tig0031163:27108-27127 None:intergenic 55.0%
GGTGCAGTTGCTGCAGCTCA+AGG - tig0031163:22164-22183 Msa1445690:intron 60.0%
GCGTAGGAATCAGCCCCAAC+AGG + tig0031163:22451-22470 None:intergenic 60.0%
! GGCTGGGTGGGCTTCAAGTT+AGG - tig0031163:23264-23283 Msa1445690:intron 60.0%
TGTGAGGCTGCAAGCCACCT+TGG + tig0031163:25188-25207 None:intergenic 60.0%
GGCTGGTGCACTTGACAAGC+TGG - tig0031163:27005-27024 Msa1445690:intron 60.0%
Chromosome Type Strat End Strand Name
tig0031163 gene 20782 27616 20782 ID=Msa1445690;Name=Msa1445690
tig0031163 mRNA 20782 27616 20782 ID=Msa1445690-mRNA-1;Parent=Msa1445690;Name=Msa1445690-mRNA-1;_AED=0.28;_eAED=0.28;_QI=419|1|1|1|0.83|0.71|7|416|346
tig0031163 exon 20782 21392 20782 ID=Msa1445690-mRNA-1:exon:15111;Parent=Msa1445690-mRNA-1
tig0031163 exon 22413 22573 22413 ID=Msa1445690-mRNA-1:exon:15110;Parent=Msa1445690-mRNA-1
tig0031163 exon 23155 23271 23155 ID=Msa1445690-mRNA-1:exon:15109;Parent=Msa1445690-mRNA-1
tig0031163 exon 23367 23532 23367 ID=Msa1445690-mRNA-1:exon:15108;Parent=Msa1445690-mRNA-1
tig0031163 exon 24258 24394 24258 ID=Msa1445690-mRNA-1:exon:15107;Parent=Msa1445690-mRNA-1
tig0031163 exon 24591 24997 24591 ID=Msa1445690-mRNA-1:exon:15106;Parent=Msa1445690-mRNA-1
tig0031163 exon 27340 27616 27340 ID=Msa1445690-mRNA-1:exon:15105;Parent=Msa1445690-mRNA-1
tig0031163 five_prime_UTR 27340 27616 27340 ID=Msa1445690-mRNA-1:five_prime_utr;Parent=Msa1445690-mRNA-1
tig0031163 five_prime_UTR 24856 24997 24856 ID=Msa1445690-mRNA-1:five_prime_utr;Parent=Msa1445690-mRNA-1
tig0031163 CDS 24591 24855 24591 ID=Msa1445690-mRNA-1:cds;Parent=Msa1445690-mRNA-1
tig0031163 CDS 24258 24394 24258 ID=Msa1445690-mRNA-1:cds;Parent=Msa1445690-mRNA-1
tig0031163 CDS 23367 23532 23367 ID=Msa1445690-mRNA-1:cds;Parent=Msa1445690-mRNA-1
tig0031163 CDS 23155 23271 23155 ID=Msa1445690-mRNA-1:cds;Parent=Msa1445690-mRNA-1
tig0031163 CDS 22413 22573 22413 ID=Msa1445690-mRNA-1:cds;Parent=Msa1445690-mRNA-1
tig0031163 CDS 21198 21392 21198 ID=Msa1445690-mRNA-1:cds;Parent=Msa1445690-mRNA-1
tig0031163 three_prime_UTR 20782 21197 20782 ID=Msa1445690-mRNA-1:three_prime_utr;Parent=Msa1445690-mRNA-1
Gene Sequence

>Msa1445690

ATGGAGCTAACAATTGCACAACCTGATGATTTTCATCTTCATCTTCGCGACGGTGCTCTTCTTGAAGCTGTAACCCCTCACAGTGCAAAGCATTTTGGAAGGGCTATTATCATGCCCAATTTGAAACCACCTATCACTACCACATCTTCTGCTATTTCTTATCGAGAATCTATTTTGAAAGCAATACCTAAAACTTCCAATTTCACTCCTCTCATGACACTTTATCTCACTGATGCTACAACTCCGAATGAGATTCAACTTGCAAAAAAAAGTGGATTTGTTTATGGTGTGAAGTTGTATCCTGCTGGAGCTACAACAAACTCACAAGATGGTGTTACAGATCTTTTTGGAAATTGTTATTCTGTTCTTGAGGAAATGGTTGAGCAAGGTTTGCCATTATTGGTTCACGGAGAGGTTACAAATCCAGAAGTTGATATTTTTGACCGGGAAAAGGTCTTTATTGAAACAATTTTAGAGCCTTTAATTCGAAGGCTTCCGCAATTGAAGGTTGTGATGGAGCATATTACTACCATGGATGCTGTTAAATTTGTAGAGTCTTGCAAAGAAGGTTATGTAGCAGCAACAGTTACACCTCAGCATATTCTTCTCAATCGCAATGCTTTGTTCCAAGGTGGCTTGCAGCCTCACAATTACTGTCTTCCCGTGCTTAAAAGAGAGATCCACAGACAGGCTATTGTTTCAGCTATCACTAGTGGAAGTAGACGATTTTTCCTTGGAACTGATAGTGCTCCACATGATAGGCGTAAAAAGGAATCTGCTTGTGGATGTGCTGGCATCTACAACTCCCCGGTTGCTCTATCACTATATGCCAAGGTTTTTGAAGAGGCTGGTGCACTTGACAAGCTGGAAGCTTTTACAAGCTTTAATGGACCTGACTTCTATGGTATCCCCAGAAACAAGTCAAAGATTAAACTGAGGAAATCTCCTTGGAGAGTACCCGAGTGTCTATCGTTTCCATTTGGAGATATTATTCCCATGTTTGCCGGTGAAACACTTGAATGGGAAGCATTGCTTATTTGA
Protein sequence

>Msa1445690

MELTIAQPDDFHLHLRDGALLEAVTPHSAKHFGRAIIMPNLKPPITTTSSAISYRESILKAIPKTSNFTPLMTLYLTDATTPNEIQLAKKSGFVYGVKLYPAGATTNSQDGVTDLFGNCYSVLEEMVEQGLPLLVHGEVTNPEVDIFDREKVFIETILEPLIRRLPQLKVVMEHITTMDAVKFVESCKEGYVAATVTPQHILLNRNALFQGGLQPHNYCLPVLKREIHRQAIVSAITSGSRRFFLGTDSAPHDRRKKESACGCAGIYNSPVALSLYAKVFEEAGALDKLEAFTSFNGPDFYGIPRNKSKIKLRKSPWRVPECLSFPFGDIIPMFAGETLEWEALLI*