AlfalfaGEDB | Msa1415910

M. sativa cultivar zhongmu-4 / Msa1415910

KEGG: K10841
GO: GO:0001207 GO:0001208 GO:0003674 GO:0003824 GO:0006139 GO:0006259 GO:0006281 GO:0006283 GO:0006289 GO:0006325 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010767 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033554 GO:0034641 GO:0034644 GO:0034728 GO:0042623 GO:0043170 GO:0043618 GO:0043620 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0104004 GO:1901360 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00176.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1415910	sp\|Q9ZV43\|CHR8_ARATH	63.465	1218	408	13	1	1213	1	1186	0.0	1499

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1415910	A0A072VKG4	96.872	1215	37	1	1	1214	1	1215	0.0	2436

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TFs/TRs:

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Gene ID	Type	Classification
Msa1415910	TR	SNF2

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002230	Msa1415910	0.815963	7.061639e-52	-8.615850e-47
Msa0002460	Msa1415910	0.806935	6.458588e-50	-8.615850e-47
Msa0003890	Msa1415910	0.825445	4.669590e-54	-8.615850e-47
Msa0006070	Msa1415910	0.829464	5.072390e-55	-8.615850e-47
Msa0006110	Msa1415910	0.871324	7.454839e-67	-8.615850e-47
Msa0011170	Msa1415910	0.838473	2.816727e-57	-8.615850e-47
Msa0014710	Msa1415910	0.816263	6.053099e-52	-8.615850e-47
Msa0015610	Msa1415910	0.839869	1.224134e-57	-8.615850e-47
Msa0017510	Msa1415910	0.825588	4.318397e-54	-8.615850e-47
Msa0020420	Msa1415910	0.802187	6.318418e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1415910	MtrunA17_Chr1g0183681	96.872	1215	37	1	1	1214	1	1215	0.0	2436
Msa1415910	MtrunA17_Chr8g0384531	33.333	633	330	11	327	906	319	912	1.48e-101	347
Msa1415910	MtrunA17_Chr3g0137091	34.137	539	285	14	365	881	273	763	8.97e-78	281
Msa1415910	MtrunA17_Chr4g0066651	33.071	508	282	13	390	880	989	1455	1.53e-76	280
Msa1415910	MtrunA17_Chr4g0066741	34.879	496	265	13	383	870	181	626	1.90e-76	275
Msa1415910	MtrunA17_Chr5g0403921	30.496	564	331	11	342	886	138	659	2.55e-75	265
Msa1415910	MtrunA17_Chr4g0040301	28.878	606	296	15	418	934	18	577	2.66e-75	265
Msa1415910	MtrunA17_Chr2g0286291	34.809	497	264	13	383	870	184	629	3.59e-74	268
Msa1415910	MtrunA17_Chr5g0394201	33.922	510	265	16	393	883	366	822	3.50e-73	265
Msa1415910	MtrunA17_Chr1g0205891	33.794	506	278	14	390	883	376	836	2.74e-72	262

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1415910	AT2G18760.4	63.465	1218	408	13	1	1213	1	1186	0.0	1499
Msa1415910	AT2G18760.1	63.465	1218	408	13	1	1213	1	1186	0.0	1499
Msa1415910	AT2G18760.2	63.465	1218	408	13	1	1213	1	1186	0.0	1499
Msa1415910	AT2G18760.7	63.465	1218	408	13	1	1213	1	1186	0.0	1499
Msa1415910	AT2G18760.5	63.465	1218	408	13	1	1213	1	1186	0.0	1499
Msa1415910	AT2G18760.6	63.465	1218	408	13	1	1213	1	1186	0.0	1499
Msa1415910	AT2G18760.3	70.533	845	221	7	372	1213	426	1245	0.0	1228
Msa1415910	AT2G18760.3	47.826	368	175	6	1	367	1	352	1.62e-77	280
Msa1415910	AT5G63950.1	35.085	590	293	11	365	902	349	900	3.00e-100	344
Msa1415910	AT5G63950.2	34.948	578	293	9	365	902	349	883	7.24e-97	334

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Find 306 sgRNAs with CRISPR-Local

Find 512 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGAGAATGGCTTTAA+TGG	0.269139	tig0024289:-20936	Msa1415910:CDS
AAAAGAACTTGTGATGTTAT+TGG	0.193839	tig0024289:-18724	None:intergenic
AAAAGTTCAACATGGAATTT+AGG	0.235396	tig0024289:+22275	None:intergenic
AAACCTCTAGACGACAATGA+GGG	0.603961	tig0024289:-23336	Msa1415910:CDS
AAAGCGTCTCGGTTCCTACA+TGG	0.536121	tig0024289:-19569	Msa1415910:CDS
AAAGGGATGTAACTATATAT+AGG	0.420730	tig0024289:-20385	Msa1415910:CDS
AAATAGCGACTCTGCATAAA+GGG	0.451334	tig0024289:-19104	Msa1415910:CDS
AAATTACCTCATCGAAAATG+TGG	0.582300	tig0024289:+24634	None:intergenic
AAATTCAATGGATATGCTGC+CGG	0.483277	tig0024289:-19423	Msa1415910:CDS
AACAGGACAGACAATAATGC+TGG	0.522323	tig0024289:+22340	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTACCTCATCGAAAATG+TGG	+	tig0024289:19048-19067	None:intergenic	30.0%
TCATCTATAAGCTTCTTCTT+CGG	+	tig0024289:19574-19593	None:intergenic	30.0%
TATTCCTATAACTCCAATAG+GGG	-	tig0024289:20544-20563	Msa1415910:intron	30.0%
TACTTCTAAACTTTCACAAC+TGG	+	tig0024289:21084-21103	None:intergenic	30.0%
TCGTATATAACATTAGAAGG+TGG	-	tig0024289:21134-21153	Msa1415910:CDS	30.0%
CGTATATAACATTAGAAGGT+GGG	-	tig0024289:21135-21154	Msa1415910:CDS	30.0%
GAGCTTCAAATATGTTATCA+GGG	+	tig0024289:21169-21188	None:intergenic	30.0%
AGAGCTTCAAATATGTTATC+AGG	+	tig0024289:21170-21189	None:intergenic	30.0%
CAGAAATGACAATACTTGTA+TGG	+	tig0024289:21288-21307	None:intergenic	30.0%
AATCGTGTAAAAGTTCAACA+TGG	+	tig0024289:21415-21434	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0024289	gene	18727	24974	18727	ID=Msa1415910;Name=Msa1415910
tig0024289	mRNA	18727	24974	18727	ID=Msa1415910-mRNA-1;Parent=Msa1415910;Name=Msa1415910-mRNA-1;_AED=0.04;_eAED=0.04;_QI=244\|1\|1\|1\|1\|1\|7\|332\|1214
tig0024289	exon	18727	19721	18727	ID=Msa1415910-mRNA-1:exon:22702;Parent=Msa1415910-mRNA-1
tig0024289	exon	19971	20438	19971	ID=Msa1415910-mRNA-1:exon:22701;Parent=Msa1415910-mRNA-1
tig0024289	exon	20802	21411	20802	ID=Msa1415910-mRNA-1:exon:22700;Parent=Msa1415910-mRNA-1
tig0024289	exon	21777	22647	21777	ID=Msa1415910-mRNA-1:exon:22699;Parent=Msa1415910-mRNA-1
tig0024289	exon	23235	23640	23235	ID=Msa1415910-mRNA-1:exon:22698;Parent=Msa1415910-mRNA-1
tig0024289	exon	23999	24535	23999	ID=Msa1415910-mRNA-1:exon:22697;Parent=Msa1415910-mRNA-1
tig0024289	exon	24641	24974	24641	ID=Msa1415910-mRNA-1:exon:22696;Parent=Msa1415910-mRNA-1
tig0024289	five_prime_UTR	24731	24974	24731	ID=Msa1415910-mRNA-1:five_prime_utr;Parent=Msa1415910-mRNA-1
tig0024289	CDS	24641	24730	24641	ID=Msa1415910-mRNA-1:cds;Parent=Msa1415910-mRNA-1
tig0024289	CDS	23999	24535	23999	ID=Msa1415910-mRNA-1:cds;Parent=Msa1415910-mRNA-1
tig0024289	CDS	23235	23640	23235	ID=Msa1415910-mRNA-1:cds;Parent=Msa1415910-mRNA-1
tig0024289	CDS	21777	22647	21777	ID=Msa1415910-mRNA-1:cds;Parent=Msa1415910-mRNA-1
tig0024289	CDS	20802	21411	20802	ID=Msa1415910-mRNA-1:cds;Parent=Msa1415910-mRNA-1
tig0024289	CDS	19971	20438	19971	ID=Msa1415910-mRNA-1:cds;Parent=Msa1415910-mRNA-1
tig0024289	CDS	19059	19721	19059	ID=Msa1415910-mRNA-1:cds;Parent=Msa1415910-mRNA-1
tig0024289	three_prime_UTR	18727	19058	18727	ID=Msa1415910-mRNA-1:three_prime_utr;Parent=Msa1415910-mRNA-1

Gene Sequence

>Msa1415910

ATGGAAGAAGAACAGGATCGAATTTTGCTTTCTACTTTAGGCGTTCAATCCGCCAATCCCGAAGACATCGAACGCCACATTTTCGATGAGGCTAGGAATGATTCGGTTGCAGTTACCGAAGATAAAGGGAATAATGATGAAAATGAATGTAAAGGTTTGACTGAAAATGCTGATCCGTTATCGAAAGCTAAAGCTGAACTTCATCAGAAGCTGAGAGCAATAGAATTTGAAATTGGTGCAGTTTCTTCGACAATTGAAAGGCCGAGAGATGTTGGTAAAAGTGAAGAATGTGAGGAGAATGAGAATTTGGACGAAGGGATTGATGAGGGTGGTGGTTCGGAACTTCAGCGTGTTCTTGCTGCCGATAGGTTGAGGAGTTTGAAGAAAACGAAGGCTCAATTGGAGAAAGAGCTGAAAAGTTTGTCTAAGGATGGTGATTTGAAAAGTACTGAGAGTAAAAAAGTTATCTTTAGTTTAGTTAAGGAAGATAGAAGACCGAAGAAGAAGCTTATAGATGATACAAAAGTAAGTAAAAGACCTGCGAAGCGGTTTAAGACGGTCTCATTTGATGATGATGATGATTTTGATGCTGTTCTCGATGCAGCCTCTGCTGGATTTGTTGAAACTGAAAGGGATGAATTGGTTAGAAAAGGAATGTTCACCCCTTTTCATAAGTTGAAGGGGTTTGAGCGCCGCATTCAACAACCTGAAGCATCAACTAGTCGTAATGCAGTTGAGCAAGAAAATACCAACGATCTTGCTTATTCCAGTGTTGAAAGAGCTGCCAGATCATTTTCTCAGGCTGCAAAAGCTCGCCCAACCTCCAAGCTGCTTAGGCCTGAAGAGGTACCGAAGCTTGATGCACCCACCATTCCTTTTCGCAGGCTCAAGAAACCAATGCAATTACCCAAACCTCTAGACGACAATGAGGGGGATCTGAATACAGATTCAAAAAGGAAAAAGAAGCGACCTGGGCCTGGTAGGAAATGGACCAAGCGTGTTTCTTCTGAGGATAGACAACTGGGTGAAAGTGAAAATGCTAATGGTTGCTTGGACAATTCCAGTTGTGAAAGTTTAGAAGTAAATGATGTCGAACTTTCTGAACATGAATCTTCGTATATAACATTAGAAGGTGGGTTGAAAATCCCTGATAACATATTTGAAGCTCTGTTTGACTATCAAAAGGTTGGTGTTCAATGGATGTGGGAGTTGCACTGCCAAAGAGCTGGTGGAATTATTGGTGATGAGATGGGTCTTGGTAAAACCATACAAGTATTGTCATTTCTGGGTGCTTTGCATTTTAGTGGCATGTACAAACCCAGCATTATTGTCTGTCCTGTTACACTCCTGCGACAATGGAAAAGGGAAGCTAAAAAGTGGTATCCTAAATTCCATGTTGAACTTTTACACGATTCTGCTCAGGATCTGGCTTCTAAAAAGAAGCGAGCTGAATCCGATGGAACAGACTCTGAAAGCAATAGTTCAAGTGACAATGATTATGAGAAAAGTGGACCGTCTAAAAATACAAGAAAATGGGAAACCCTGATAAATCGTGTCATGAGATCAGAATCTGGATTACTCATCACCACTTATGAGCAGCTAAGGATATTGGGAGACCAGTTGCTTAACATTGAATGGGGTTATGCAGTTCTTGATGAAGGGCATAAAATTAGGAATCCAAACGCCGAAGTTACCCTAGCTTGCAAACAGCTACAAACTGTACACCGCATAATAATGACTGGTGCACCTATTCAGAACAAACTGAGTGAGTTATGGTCGTTGTTTGATTTTGTTTTCCCTGGAAAATTGGGTGTTTTGCCTGTGTTTGAAGCCGAATTTGCAGTTCCTATAAGAGTTGGCGGATATTCAAATGCTTCTCCGTTACAAGTATCCACAGCATACAGGTGTGCGGTGGTGCTGCGTGATTTAATTATGCCTTATCTTCTCCGACGAATGAAGGCTGATGTAAATGCTCAGCTTCCAAAGAAAACTGAGCACGTTCTGTTTTGCAGCCTTACACCAGAGCAAGTATCTTCTTATAGAGCATTTTTGGCAAGCACTGAGGTGGAGGAAATATTGGATGGAGGCAGGAATTCACTTTATGGAATTGATGTGATGCGTAAGATCTGCAATCACCCAGACCTACTTGAAAGGGAACAGGCCTTCACCAATCCAGATTATGGAAATCCTGAACGCAGTGGGAAAATGAAAGTTGTAGCTCAAGTGCTTAATGTTTGGAAGGAGCAGGGCCACCGTGTTCTTCTTTTTACTCAAACCCAACAAATGCTTGACATTTTTGAGAAATATTTGACCACTTGTGGACATATTTACCGGAGAATGGATGGTCTCACTCCTGTAAAACAGAGAATGGCTTTAATGGACGAGTTTAATGCCTCCAGTGAGATTTTTGTTTTCATTTTAACAACCAAAGTTGGGGGGTTGGGGACGAATCTTACTGGTGCAGATAGAGTGATCATCTTTGACCCTGATTGGAATCCTTCGACTGATATGCAGGCTAGAGAGCGTGCGTGGCGAATTGGTCAGAAAAGGGATGTAACTATATATAGGTTAATCACACGTGGAACTATAGAGGAGAAAGTATATCATCGTCAGATTTACAAACATTTTCTTACGAATAAGATATTGAAGAACCCACAGCAGAAAAGGTTCTTTAAGGCCCGAGATATGAAGGATCTTTTTGTTTTGAATGTGGAAGGAGAAACTGGGTCAACAGAAACGTCAAATATTTTCAGTCAAATATCTGAAGATGTAAATATTATTGGGGCACATCAAGAAAATCAGGATAATAATGAGTATAGTCAAACTGCTGAACTGGGTTCTGAAGATGAAGCAGTTGGTGATGATGGCAAATCACGCAGAGGATCTTCAAGAGGTAAAGGGAAAGAGAAGGTTGACAAAAGTAATGGGGTTGATGAAGAAGCAAATATGTTGAGAAGTCTTTTTGATGCTAATGGGATACATAGTGCCATGAACCATGATTTGATCATGGATGCCCATGATGAGGAGAAGATGAGACTTGACGAGGAAGCTTCCAAGGTTGCGCAAAGAGCTGCAGAAGCTTTACGTCAGTCAAGAATGATCCGAAACCATGAAAGCGTCTCGGTTCCTACATGGACAGGAAGGTCAGGAGCTGCTGGTGCACCATCATCTGTTCGGCGGAAGTTTGGTTCAACTGTGAAACCCCAGTTGCTAAACAATAGCAAAGCATCTGATGAATCACCAAGCAGGGGATCTAACAAATTCAATGGATATGCTGCCGGGGCCTCTTCTGGTAAGGCATTATCTTCTGCTGAAATATTATCCAAAATTCGAGGTAATCAAGAAAAGGCCATCAGTGCTGGGATTGACCATCAGTTTGGTCAGTCAAGGTCTGCAGATGTTAGAACTTCCAGGGCTCCTGAAAATTCATCTGGAATCCAACCTGAAGTAATGATTCGGAAAATATGTACCTTTTTCCAACAGAAAGGTGGCAGTTGTAGTTCAGACAGCATAGTTCAGCATTTCAAGGACAGGATTCCCTCAAAAGATCTTCCCCTGTTCAAGAATATGTTAAAGGAAATAGCGACTCTGCATAAAGGGTCAAATGGTTCCCATTGGGTTCTGAAGCCAGACTATCAAGTATAG

Protein sequence

>Msa1415910

MEEEQDRILLSTLGVQSANPEDIERHIFDEARNDSVAVTEDKGNNDENECKGLTENADPLSKAKAELHQKLRAIEFEIGAVSSTIERPRDVGKSEECEENENLDEGIDEGGGSELQRVLAADRLRSLKKTKAQLEKELKSLSKDGDLKSTESKKVIFSLVKEDRRPKKKLIDDTKVSKRPAKRFKTVSFDDDDDFDAVLDAASAGFVETERDELVRKGMFTPFHKLKGFERRIQQPEASTSRNAVEQENTNDLAYSSVERAARSFSQAAKARPTSKLLRPEEVPKLDAPTIPFRRLKKPMQLPKPLDDNEGDLNTDSKRKKKRPGPGRKWTKRVSSEDRQLGESENANGCLDNSSCESLEVNDVELSEHESSYITLEGGLKIPDNIFEALFDYQKVGVQWMWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSGMYKPSIIVCPVTLLRQWKREAKKWYPKFHVELLHDSAQDLASKKKRAESDGTDSESNSSSDNDYEKSGPSKNTRKWETLINRVMRSESGLLITTYEQLRILGDQLLNIEWGYAVLDEGHKIRNPNAEVTLACKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPIRVGGYSNASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTPEQVSSYRAFLASTEVEEILDGGRNSLYGIDVMRKICNHPDLLEREQAFTNPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDIFEKYLTTCGHIYRRMDGLTPVKQRMALMDEFNASSEIFVFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDMQARERAWRIGQKRDVTIYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFVLNVEGETGSTETSNIFSQISEDVNIIGAHQENQDNNEYSQTAELGSEDEAVGDDGKSRRGSSRGKGKEKVDKSNGVDEEANMLRSLFDANGIHSAMNHDLIMDAHDEEKMRLDEEASKVAQRAAEALRQSRMIRNHESVSVPTWTGRSGAAGAPSSVRRKFGSTVKPQLLNNSKASDESPSRGSNKFNGYAAGASSGKALSSAEILSKIRGNQEKAISAGIDHQFGQSRSADVRTSRAPENSSGIQPEVMIRKICTFFQQKGGSCSSDSIVQHFKDRIPSKDLPLFKNMLKEIATLHKGSNGSHWVLKPDYQV*