AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0648310

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0648310 MtrunA17_Chr4g0040211 99.422 346 2 0 1 346 1 346 0.0 714
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0648310 AT4G22930.1 78.198 344 75 0 1 344 33 376 0.0 592
Msa0648310 AT4G22930.2 78.198 344 75 0 1 344 33 376 0.0 592

Find 103 sgRNAs with CRISPR-Local

Find 436 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAATCTTTGACTTGTTTC+TGG 0.085321 4_3:-54813765 None:intergenic
TGCGGAAGCCTTCGAATTAA+AGG 0.196952 4_3:-54811635 None:intergenic
CCTCACAGTGCAAAGCATTT+TGG 0.224625 4_3:+54810310 Msa0648310:CDS
TATTCAGATGTGGCATTTAT+TGG 0.225798 4_3:+54813908 Msa0648310:three_prime_UTR
CTCATAATATGCAACATTTC+GGG 0.269436 4_3:+54814004 Msa0648310:three_prime_UTR
TGAGCAAGGTTTGCCATTAT+TGG 0.285780 4_3:+54810811 Msa0648310:CDS
TGTCATGAGAGGAGTGAAAT+TGG 0.300666 4_3:-54810431 None:intergenic
AGTGATAGGTGGTTTCAAAT+TGG 0.303522 4_3:-54810350 None:intergenic
ACTCATAATATGCAACATTT+CGG 0.312371 4_3:+54814003 Msa0648310:three_prime_UTR
AGTAAACAAATTACCAATAA+TGG 0.320625 4_3:-54810824 None:intergenic
TTTAATGGACCTGACTTCTA+TGG 0.320968 4_3:+54813737 Msa0648310:CDS
TTAATCTTTGACTTGTTTCT+GGG 0.339416 4_3:-54813764 None:intergenic
GATATTATTCCCATGTTTGC+CGG 0.347318 4_3:+54813839 Msa0648310:CDS
GCAGAAGATGTGGTAGTGAT+AGG 0.356519 4_3:-54810364 None:intergenic
ACCAGTTGGTACAAGCTATC+AGG 0.362028 4_3:-54813977 None:intergenic
TCCACATGATAGGCGTAAAA+AGG 0.378745 4_3:+54812584 Msa0648310:CDS
TTTGTAGAGTCTTGCAAAGA+AGG 0.398653 4_3:+54811704 Msa0648310:CDS
GCATATAGTGATAGAGCAAC+CGG 0.400997 4_3:-54812642 None:intergenic
TTATTCTGTTCTTGAGGAAA+TGG 0.405095 4_3:+54810787 Msa0648310:CDS
GTGATAGGTGGTTTCAAATT+GGG 0.415995 4_3:-54810349 None:intergenic
AGTATGTTAATCTAGTTAGT+TGG 0.430882 4_3:+54813931 Msa0648310:three_prime_UTR
ACCTGATAGCTTGTACCAAC+TGG 0.433973 4_3:+54813976 Msa0648310:three_prime_UTR
CTGATAGTGCTCCACATGAT+AGG 0.434036 4_3:+54812574 Msa0648310:CDS
CAAAATGCTTTGCACTGTGA+GGG 0.440873 4_3:-54810309 None:intergenic
GGCTGGTGCACTTGACAAGC+TGG 0.441125 4_3:+54813700 Msa0648310:intron
ATCACGTTGCTGTAAAAGTT+AGG 0.441304 4_3:+54807505 Msa0648310:five_prime_UTR
TAGGTTTCAGCTTAAATAGC+TGG 0.444422 4_3:+54814084 Msa0648310:three_prime_UTR
CTTGCAAGTTGAATCTCATT+CGG 0.451170 4_3:-54810478 None:intergenic
TATTGAGATTGTAATTTAAG+TGG 0.452365 4_3:+54814108 Msa0648310:three_prime_UTR
GGAAGCATTGCTTATTTGAC+TGG 0.456676 4_3:+54813877 Msa0648310:exon
GAAGGATGGCTTCGAAGATC+CGG 0.458151 4_3:-54807692 None:intergenic
GAGTGTCTATCGTTTCCATT+TGG 0.458488 4_3:+54813815 Msa0648310:CDS
TTAGTTGGAGTTGGTTACCT+TGG 0.459230 4_3:+54813946 Msa0648310:three_prime_UTR
TTAATCTAGTTAGTTGGAGT+TGG 0.460803 4_3:+54813937 Msa0648310:three_prime_UTR
AATCGCAATGCTTTGTTCCA+AGG 0.460976 4_3:+54811862 Msa0648310:CDS
AAGTGTTTCACCGGCAAACA+TGG 0.467013 4_3:-54813849 None:intergenic
ATTGAGATTGTAATTTAAGT+GGG 0.467812 4_3:+54814109 Msa0648310:three_prime_UTR
AAGTCTTAGCATCTGCTACT+TGG 0.474592 4_3:-54807717 None:intergenic
AACAGCAGAGACAGAAAGAA+TGG 0.480032 4_3:+54810216 Msa0648310:exon
GTCTCTGCTGTTGCTTTCGA+CGG 0.487907 4_3:-54810205 None:intergenic
AGATGAAGATGAAAATCATC+AGG 0.495760 4_3:-54810256 None:intergenic
TTCCCATTCAAGTGTTTCAC+CGG 0.499971 4_3:-54813858 None:intergenic
TCATACGCCTCAGCTGTTAC+CGG 0.500123 4_3:+54807673 Msa0648310:five_prime_UTR
TGCCGGTGAAACACTTGAAT+GGG 0.503432 4_3:+54813856 Msa0648310:CDS
GAGTTTGTTGTAGCTCCAGC+AGG 0.506473 4_3:-54810731 None:intergenic
GAATCTGCTTGTGGATGTGC+TGG 0.507355 4_3:+54812606 Msa0648310:CDS
TGCTGCAGAGGGTTCACCAT+CGG 0.508724 4_3:+54810097 Msa0648310:five_prime_UTR
TTAAACTGAGGAAATCTCCT+TGG 0.508792 4_3:+54813783 Msa0648310:CDS
CATAAAAGTCGTTTGAAACG+TGG 0.516340 4_3:+54807548 Msa0648310:five_prime_UTR
TGTGAGGCTGCAAGCCACCT+TGG 0.516437 4_3:-54811879 None:intergenic
CTATATAGTGTGTGCTGCAG+AGG 0.517356 4_3:+54810085 Msa0648310:intron
TACAAATTTAACAGCATCCA+TGG 0.517829 4_3:-54811687 None:intergenic
GGTGTGAAGTTGTATCCTGC+TGG 0.522096 4_3:+54810716 Msa0648310:CDS
ATGGGAATAATATCTCCAAA+TGG 0.523399 4_3:-54813830 None:intergenic
TTCGGGCGTATCAGAAATGC+GGG 0.523896 4_3:+54814021 Msa0648310:three_prime_UTR
TCGAAGGCTTCCGCAATTGA+AGG 0.525030 4_3:+54811643 Msa0648310:CDS
TTGCCGGTGAAACACTTGAA+TGG 0.530630 4_3:+54813855 Msa0648310:CDS
ATAAAAGTCGTTTGAAACGT+GGG 0.532849 4_3:+54807549 Msa0648310:five_prime_UTR
TGCTCTATCACTATATGCCA+AGG 0.536801 4_3:+54812647 Msa0648310:CDS
AGCATCTGCTACTTGGAAGA+AGG 0.538184 4_3:-54807710 None:intergenic
GGGCATTCAGAAATATGATC+AGG 0.540133 4_3:+54814129 Msa0648310:three_prime_UTR
CTTGAGGAAATGGTTGAGCA+AGG 0.541121 4_3:+54810797 Msa0648310:CDS
CTGGGGATACCATAGAAGTC+AGG 0.547025 4_3:-54813746 None:intergenic
ATTGTTTCAGCTATCACTAG+TGG 0.552041 4_3:+54812528 Msa0648310:CDS
CGCAATGCTTTGTTCCAAGG+TGG 0.554240 4_3:+54811865 Msa0648310:CDS
AAATTGTTATTCTGTTCTTG+AGG 0.556275 4_3:+54810781 Msa0648310:CDS
TTACGAAAACAGGGTGCCGA+TGG 0.565921 4_3:-54810113 None:intergenic
TCCGCAATTGAAGGTTGTGA+TGG 0.566851 4_3:+54811652 Msa0648310:CDS
CAGTATACATGACAGGTTCA+CGG 0.568492 4_3:+54811545 Msa0648310:intron
CCAAAATGCTTTGCACTGTG+AGG 0.574508 4_3:-54810310 None:intergenic
TATATAGTGTGTGCTGCAGA+GGG 0.575920 4_3:+54810086 Msa0648310:intron
TGCTGGCATCTACAACTCCC+CGG 0.579653 4_3:+54812623 Msa0648310:CDS
AGACACTCGGGTACTCTCCA+AGG 0.597244 4_3:-54813800 None:intergenic
AGTGTTTCACCGGCAAACAT+GGG 0.600430 4_3:-54813848 None:intergenic
ATATTATGAGTGTAACCAGT+TGG 0.601304 4_3:-54813991 None:intergenic
AAAATGCTTTGCACTGTGAG+GGG 0.602141 4_3:-54810308 None:intergenic
GTGGAGCACTATCAGTTCCA+AGG 0.602259 4_3:-54812566 None:intergenic
TAATCTTTGACTTGTTTCTG+GGG 0.603480 4_3:-54813763 None:intergenic
AGTGAGATCACAATAGTCGA+TGG 0.603638 4_3:-54814291 None:intergenic
GGCAGTTGAAGCTTCTCTGT+CGG 0.607309 4_3:-54810184 None:intergenic
GCTACAACAAACTCACAAGA+TGG 0.612227 4_3:+54810740 Msa0648310:CDS
GAAGATGTGGTAGTGATAGG+TGG 0.615955 4_3:-54810361 None:intergenic
GTTGCTGTAAAAGTTAGGAA+AGG 0.616677 4_3:+54807510 Msa0648310:five_prime_UTR
GGTCTCTGCGTATTCAGATG+TGG 0.620264 4_3:+54813898 Msa0648310:three_prime_UTR
GTGAGATAAAGTGTCATGAG+AGG 0.623350 4_3:-54810442 None:intergenic
TCTGCTACTTGGAAGAAGGA+TGG 0.624494 4_3:-54807706 None:intergenic
ATAAGAAATAGCAGAAGATG+TGG 0.624539 4_3:-54810374 None:intergenic
CATATAGTGATAGAGCAACC+GGG 0.624630 4_3:-54812641 None:intergenic
AAATGGAAACGATAGACACT+CGG 0.625624 4_3:-54813813 None:intergenic
TTTCATCTTCATCTTCGCGA+CGG 0.628549 4_3:+54810265 Msa0648310:CDS
CGAAGATCCGGTAACAGCTG+AGG 0.634375 4_3:-54807680 None:intergenic
TCCATCACAACCTTCAATTG+CGG 0.639588 4_3:-54811653 None:intergenic
CAACGCTGCAGAGTTGAGCA+AGG 0.655555 4_3:+54810161 Msa0648310:five_prime_UTR
TTTCGGGCGTATCAGAAATG+CGG 0.658277 4_3:+54814020 Msa0648310:three_prime_UTR
TACATGACAGGTTCACGGAG+AGG 0.662980 4_3:+54811550 Msa0648310:intron
GCTATCAGGTTCTGTCACCA+AGG 0.666725 4_3:-54813963 None:intergenic
AATGGAAACGATAGACACTC+GGG 0.667966 4_3:-54813812 None:intergenic
ACGGGAAGACAGTAATTGTG+AGG 0.675653 4_3:-54811895 None:intergenic
GATGGAGCATATTACTACCA+TGG 0.681818 4_3:+54811670 Msa0648310:CDS
GTATAAATTATAAATAACAC+AGG 0.696700 4_3:+54814267 Msa0648310:three_prime_UTR
ACAAGTCAAAGATTAAACTG+AGG 0.713629 4_3:+54813771 Msa0648310:CDS
ATATAGTGATAGAGCAACCG+GGG 0.715068 4_3:-54812640 None:intergenic
CGATTGAGAAGAATATGCTG+AGG 0.789742 4_3:-54811844 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTAAATTATTTTTATTT+AGG + chr4_3:54810597-54810616 Msa0648310:intron 0.0%
!!! ATATTTTAGAAAATTATATC+AGG + chr4_3:54809066-54809085 Msa0648310:intron 10.0%
!!! TATTTTAGAAAATTATATCA+GGG + chr4_3:54809067-54809086 Msa0648310:intron 10.0%
!! AAAAAAAGAAACAAAAAATT+GGG - chr4_3:54810898-54810917 None:intergenic 10.0%
!! CTAATTATTATCTAATAACT+AGG - chr4_3:54808050-54808069 None:intergenic 15.0%
!!! TATCTGAAACTAAAATAAAA+TGG - chr4_3:54808831-54808850 None:intergenic 15.0%
!! AGAATATTAAAATCTGATAT+TGG - chr4_3:54809041-54809060 None:intergenic 15.0%
!! AAGTTTATCTTAAAAAAGAA+CGG + chr4_3:54809314-54809333 Msa0648310:intron 15.0%
!!! TAACTTTTGGTTTTTTAAAA+TGG + chr4_3:54809902-54809921 Msa0648310:intron 15.0%
!!! AACTTTTGGTTTTTTAAAAT+GGG + chr4_3:54809903-54809922 Msa0648310:intron 15.0%
!!! TTTTTTGGATTTAATGAAAT+TGG + chr4_3:54809934-54809953 Msa0648310:intron 15.0%
!!! TTTTTGGATTTAATGAAATT+GGG + chr4_3:54809935-54809954 Msa0648310:intron 15.0%
!! ATATAGATAAAAAAAAAACG+AGG - chr4_3:54810071-54810090 None:intergenic 15.0%
!! AAAAAAGAAACAAAAAATTG+GGG - chr4_3:54810897-54810916 None:intergenic 15.0%
!! CAAAAAAAGAAACAAAAAAT+TGG - chr4_3:54810899-54810918 None:intergenic 15.0%
!!! ATTTTTTGTTTCTTTTTTTG+TGG + chr4_3:54810899-54810918 Msa0648310:intron 15.0%
!!! TTTTTTGTTTCTTTTTTTGT+GGG + chr4_3:54810900-54810919 Msa0648310:intron 15.0%
!! AAAACATAATTCTATTACAA+AGG - chr4_3:54811329-54811348 None:intergenic 15.0%
!!! TTGTAATAGAATTATGTTTT+TGG + chr4_3:54811329-54811348 Msa0648310:intron 15.0%
!!! TTATAAACAAATTCTTTTTC+AGG - chr4_3:54812148-54812167 None:intergenic 15.0%
!! GTTAAAATATTATTTCCAAA+AGG + chr4_3:54813023-54813042 Msa0648310:intron 15.0%
!!! AAATAGTAATAATAGTGTTT+TGG + chr4_3:54813094-54813113 Msa0648310:intron 15.0%
!!! TAATATTGTTTCTCTTTAAT+TGG - chr4_3:54813168-54813187 None:intergenic 15.0%
!! GTATAAATTATAAATAACAC+AGG + chr4_3:54814267-54814286 Msa0648310:three_prime_UTR 15.0%
!! ATTATCTAATAACTAGGTAT+AGG - chr4_3:54808044-54808063 None:intergenic 20.0%
!!! TAAACAAACTTATTTCTACT+AGG + chr4_3:54808287-54808306 Msa0648310:intron 20.0%
!!! ATACCTATATTTTGTACAAT+TGG + chr4_3:54808420-54808439 Msa0648310:intron 20.0%
!! ATAATAAAACGATACTTTAC+CGG - chr4_3:54808490-54808509 None:intergenic 20.0%
!! ATTGAATTGTAATTGTTGAA+CGG + chr4_3:54808637-54808656 Msa0648310:intron 20.0%
!! AAACTAAAATAAAATGGAAC+GGG - chr4_3:54808825-54808844 None:intergenic 20.0%
!! GAAACTAAAATAAAATGGAA+CGG - chr4_3:54808826-54808845 None:intergenic 20.0%
!!! AAGGTTTTATTCTTGAAAAA+TGG + chr4_3:54808874-54808893 Msa0648310:intron 20.0%
!!! AGGTTTTATTCTTGAAAAAT+GGG + chr4_3:54808875-54808894 Msa0648310:intron 20.0%
!! TACTTACAAAAAAAATGACT+CGG - chr4_3:54809017-54809036 None:intergenic 20.0%
!!! ACTAAACTACATTTTTAAAG+TGG - chr4_3:54809223-54809242 None:intergenic 20.0%
!! AAACCATATTAAAAGAAAAC+CGG + chr4_3:54809248-54809267 Msa0648310:intron 20.0%
!! ATAAAAAAAAAACGAGGTTA+AGG - chr4_3:54810065-54810084 None:intergenic 20.0%
!! AGTAAACAAATTACCAATAA+TGG - chr4_3:54810827-54810846 None:intergenic 20.0%
!! AATTAAGTTAATTGTCCAAA+CGG - chr4_3:54810953-54810972 None:intergenic 20.0%
!! AATATAACTGCTTATGTATA+TGG + chr4_3:54810974-54810993 Msa0648310:intron 20.0%
!!! GATTATTTGATTTTATCTAC+AGG - chr4_3:54811164-54811183 None:intergenic 20.0%
!!! ATTTTTATGCAACAGTATAA+TGG - chr4_3:54811200-54811219 None:intergenic 20.0%
!! TACAAAAATAGCAAATTATC+AGG - chr4_3:54811799-54811818 None:intergenic 20.0%
!!! GATAATTTGCTATTTTTGTA+AGG + chr4_3:54811799-54811818 Msa0648310:intron 20.0%
!! GAGTAATGATTTAAAAAGTA+CGG + chr4_3:54812181-54812200 Msa0648310:intron 20.0%
!!! ATTTTATAATATTCTTGTGG+TGG + chr4_3:54812204-54812223 Msa0648310:intron 20.0%
!! AAGTTTATATTAGATTACGT+AGG + chr4_3:54812694-54812713 Msa0648310:intron 20.0%
!!! AAAAATCTTAATCTAGCTTT+TGG + chr4_3:54813406-54813425 Msa0648310:intron 20.0%
!! TATTGAGATTGTAATTTAAG+TGG + chr4_3:54814108-54814127 Msa0648310:three_prime_UTR 20.0%
!! ATTGAGATTGTAATTTAAGT+GGG + chr4_3:54814109-54814128 Msa0648310:three_prime_UTR 20.0%
! TTACAATAACCAAACCTAAA+AGG - chr4_3:54807893-54807912 None:intergenic 25.0%
! ATAGTTTAACCAAGAATAAC+TGG + chr4_3:54807967-54807986 Msa0648310:intron 25.0%
! TAGTTTAACCAAGAATAACT+GGG + chr4_3:54807968-54807987 Msa0648310:intron 25.0%
!!! TTTTCAAGTCAGAACTAATT+AGG + chr4_3:54808140-54808159 Msa0648310:intron 25.0%
!!! GTTTTATTTCATGAATACAC+AGG + chr4_3:54808190-54808209 Msa0648310:intron 25.0%
!! TAGTTTGTACTACTAAGTAT+AGG + chr4_3:54808348-54808367 Msa0648310:intron 25.0%
! CTTCCAATTGTACAAAATAT+AGG - chr4_3:54808426-54808445 None:intergenic 25.0%
! AACCAAAATATGAAATTGTG+AGG + chr4_3:54808457-54808476 Msa0648310:intron 25.0%
!! AACCTCACAATTTCATATTT+TGG - chr4_3:54808462-54808481 None:intergenic 25.0%
! AGTATATACAACAGCTAAAA+CGG + chr4_3:54808561-54808580 Msa0648310:intron 25.0%
! AAATCTTGAACAGAAAGTAA+AGG - chr4_3:54808611-54808630 None:intergenic 25.0%
! CAAATACAAGTTTATGTAGA+TGG + chr4_3:54808677-54808696 Msa0648310:intron 25.0%
! AAACAATTGGTTAGTGATTA+TGG + chr4_3:54808716-54808735 Msa0648310:intron 25.0%
! TTAGTTAGTGACTGATATTA+TGG + chr4_3:54808764-54808783 Msa0648310:intron 25.0%
! TGATATTATGGTTGTAGTTA+GGG + chr4_3:54808776-54808795 Msa0648310:intron 25.0%
!!! TATTTTAGTTTCAGATAGAC+AGG + chr4_3:54808834-54808853 Msa0648310:intron 25.0%
! TTGAATCTTGCATTTATGTA+AGG + chr4_3:54808967-54808986 Msa0648310:intron 25.0%
! ACTTACAAAAAAAATGACTC+GGG - chr4_3:54809016-54809035 None:intergenic 25.0%
!!! ACTACATTTTTAAAGTGGAT+TGG - chr4_3:54809218-54809237 None:intergenic 25.0%
!! GGTTTTCTTTTAATATGGTT+TGG - chr4_3:54809249-54809268 None:intergenic 25.0%
!!! AAACCGGTTTTCTTTTAATA+TGG - chr4_3:54809254-54809273 None:intergenic 25.0%
! AACCATTTCACAATAAAAAC+CGG - chr4_3:54809270-54809289 None:intergenic 25.0%
!!! AATACTAGTTTTTCCTAGAT+TGG + chr4_3:54809358-54809377 Msa0648310:intron 25.0%
! GTAATATGAGAAATGAATGA+TGG + chr4_3:54809808-54809827 Msa0648310:intron 25.0%
!! AGAAATGAATGATGGAAATT+AGG + chr4_3:54809816-54809835 Msa0648310:intron 25.0%
!!! AAATGGGTACAGTTTTTTTT+TGG + chr4_3:54809919-54809938 Msa0648310:intron 25.0%
!!! AACCTTTTTTTACGAAAACA+GGG - chr4_3:54810125-54810144 None:intergenic 25.0%
!! GAAAAAAGTGGATTTGTTTA+TGG + chr4_3:54810695-54810714 Msa0648310:intron 25.0%
!! AAATTGTTATTCTGTTCTTG+AGG + chr4_3:54810781-54810800 Msa0648310:CDS 25.0%
! ATTAAGTTAATTGTCCAAAC+GGG - chr4_3:54810952-54810971 None:intergenic 25.0%
! ATATTTCCATAATCTCTCTA+AGG - chr4_3:54811068-54811087 None:intergenic 25.0%
! AATATGCTGAAAAAAGCTTA+CGG + chr4_3:54811083-54811102 Msa0648310:intron 25.0%
! AAAATGTATTTCATGCTCTA+TGG + chr4_3:54811215-54811234 Msa0648310:intron 25.0%
! GTTTGTAGATAATTTCATTG+TGG - chr4_3:54811375-54811394 None:intergenic 25.0%
!! AGGTATTGTAGTAAATTACT+TGG + chr4_3:54811724-54811743 Msa0648310:intron 25.0%
! GGTATTGTAGTAAATTACTT+GGG + chr4_3:54811725-54811744 Msa0648310:intron 25.0%
!!! TTAGAGTTAAGAGAGTTTTT+TGG + chr4_3:54811968-54811987 Msa0648310:intron 25.0%
!! TGGTTTAGATTTTCAAACAA+TGG + chr4_3:54811988-54812007 Msa0648310:intron 25.0%
! CATTCAATGAATCTGAAAAA+AGG - chr4_3:54812073-54812092 None:intergenic 25.0%
! ATAATATACACCAGATACAT+TGG + chr4_3:54812110-54812129 Msa0648310:intron 25.0%
!! TTTTAAATCATTACTCCCTT+CGG - chr4_3:54812177-54812196 None:intergenic 25.0%
!! CGGATTTTATAATATTCTTG+TGG + chr4_3:54812201-54812220 Msa0648310:intron 25.0%
! TAATTTCACAAATGTGCATA+TGG + chr4_3:54812737-54812756 Msa0648310:intron 25.0%
! AATTTCACAAATGTGCATAT+GGG + chr4_3:54812738-54812757 Msa0648310:intron 25.0%
! ATAAACTGCTTATTTGAGTA+TGG + chr4_3:54813586-54813605 Msa0648310:intron 25.0%
!!! TTAATCTTTGACTTGTTTCT+GGG - chr4_3:54813767-54813786 None:intergenic 25.0%
!!! TTTAATCTTTGACTTGTTTC+TGG - chr4_3:54813768-54813787 None:intergenic 25.0%
! AGTATGTTAATCTAGTTAGT+TGG + chr4_3:54813931-54813950 Msa0648310:three_prime_UTR 25.0%
! ACTCATAATATGCAACATTT+CGG + chr4_3:54814003-54814022 Msa0648310:three_prime_UTR 25.0%
!!! CTTTTATTTCTTCGAAAGTT+AGG + chr4_3:54814065-54814084 Msa0648310:three_prime_UTR 25.0%
! TTACTTGTGAAAAAGAAATG+AGG - chr4_3:54814206-54814225 None:intergenic 25.0%
!!! TCTTTTTCACAAGTAAATGA+TGG + chr4_3:54814210-54814229 Msa0648310:three_prime_UTR 25.0%
!!! CTTTTTCACAAGTAAATGAT+GGG + chr4_3:54814211-54814230 Msa0648310:three_prime_UTR 25.0%
! TCAAACGACTTTTATGGAAA+TGG - chr4_3:54807544-54807563 None:intergenic 30.0%
! ATAAAAGTCGTTTGAAACGT+GGG + chr4_3:54807549-54807568 Msa0648310:five_prime_UTR 30.0%
AGTAATGCGAATTGATACAT+GGG - chr4_3:54807784-54807803 None:intergenic 30.0%
TAGTAATGCGAATTGATACA+TGG - chr4_3:54807785-54807804 None:intergenic 30.0%
ACCTAAAAGGTAAAAAGGAA+CGG - chr4_3:54807880-54807899 None:intergenic 30.0%
!!! TCCTTTTTACCTTTTAGGTT+TGG + chr4_3:54807881-54807900 Msa0648310:intron 30.0%
ACCAAACCTAAAAGGTAAAA+AGG - chr4_3:54807885-54807904 None:intergenic 30.0%
! TCACATCGTTGATTAGAATT+TGG - chr4_3:54807920-54807939 None:intergenic 30.0%
TGGGAGAAGATAGATAATTA+GGG + chr4_3:54807987-54808006 Msa0648310:intron 30.0%
! ATAGATAATTAGGGGCATAT+AGG + chr4_3:54807996-54808015 Msa0648310:intron 30.0%
CTAATAACTAGGTATAGGTA+TGG - chr4_3:54808039-54808058 None:intergenic 30.0%
! GTTTGTTTAAAGTAGATAGC+AGG - chr4_3:54808276-54808295 None:intergenic 30.0%
TACCGACAGGTAAATAATAT+TGG + chr4_3:54808521-54808540 Msa0648310:intron 30.0%
ACCGACAGGTAAATAATATT+GGG + chr4_3:54808522-54808541 Msa0648310:intron 30.0%
ACCCAATATTATTTACCTGT+CGG - chr4_3:54808526-54808545 None:intergenic 30.0%
GTATATACTATTGAGTGTGA+GGG - chr4_3:54808550-54808569 None:intergenic 30.0%
TGTATATACTATTGAGTGTG+AGG - chr4_3:54808551-54808570 None:intergenic 30.0%
TTGTAATTGTTGAACGGTAT+TGG + chr4_3:54808643-54808662 Msa0648310:intron 30.0%
TTAGAGATCACACAAACAAT+TGG + chr4_3:54808703-54808722 Msa0648310:intron 30.0%
CTGATATTATGGTTGTAGTT+AGG + chr4_3:54808775-54808794 Msa0648310:intron 30.0%
AATGCAAGATTCAATTCTCA+GGG - chr4_3:54808961-54808980 None:intergenic 30.0%
AAATGCAAGATTCAATTCTC+AGG - chr4_3:54808962-54808981 None:intergenic 30.0%
!! AACCGGTTTTTATTGTGAAA+TGG + chr4_3:54809265-54809284 Msa0648310:intron 30.0%
AAAAAAGAACGGTTCATATG+TGG + chr4_3:54809325-54809344 Msa0648310:intron 30.0%
GAGAAATGTAAAACCAATCT+AGG - chr4_3:54809374-54809393 None:intergenic 30.0%
AAGAAGAAGAAGAAGAAGAA+TGG - chr4_3:54809485-54809504 None:intergenic 30.0%
GAATTGAAGAATGCAATGAA+TGG - chr4_3:54809526-54809545 None:intergenic 30.0%
! ACTGTTCAAACCATTGTTTT+GGG - chr4_3:54809604-54809623 None:intergenic 30.0%
!! TGTTATTGGTAGTGGTAATT+GGG + chr4_3:54809656-54809675 Msa0648310:intron 30.0%
TTATTGCTTCTAACACCATT+AGG + chr4_3:54809697-54809716 Msa0648310:intron 30.0%
ATCGAAATTGTTCATCCTAA+TGG - chr4_3:54809715-54809734 None:intergenic 30.0%
ATTAGGATGAACAATTTCGA+TGG + chr4_3:54809714-54809733 Msa0648310:intron 30.0%
ATGAATTTCACATTTCTCAG+AGG - chr4_3:54809766-54809785 None:intergenic 30.0%
TCATAGAAATCGTGTGAATT+TGG + chr4_3:54809782-54809801 Msa0648310:intron 30.0%
! TGAATGATGGAAATTAGGAA+TGG + chr4_3:54809821-54809840 Msa0648310:intron 30.0%
! GGAGAAATTAGGTTAACTTT+TGG + chr4_3:54809889-54809908 Msa0648310:intron 30.0%
! CTGAACTGTTTTACAAAATC+CGG - chr4_3:54809986-54810005 None:intergenic 30.0%
!!! CAACCTTTTTTTACGAAAAC+AGG - chr4_3:54810126-54810145 None:intergenic 30.0%
AGATGAAGATGAAAATCATC+AGG - chr4_3:54810259-54810278 None:intergenic 30.0%
ATAAGAAATAGCAGAAGATG+TGG - chr4_3:54810377-54810396 None:intergenic 30.0%
CAAGTTGTGTAGTAGTTTAT+TGG - chr4_3:54810651-54810670 None:intergenic 30.0%
! TTTGCATTGACAGAAAAAAG+TGG + chr4_3:54810683-54810702 Msa0648310:intron 30.0%
TTATTCTGTTCTTGAGGAAA+TGG + chr4_3:54810787-54810806 Msa0648310:CDS 30.0%
AGAAACAAAAAATTGGGGAA+GGG - chr4_3:54810892-54810911 None:intergenic 30.0%
AAGAAACAAAAAATTGGGGA+AGG - chr4_3:54810893-54810912 None:intergenic 30.0%
!!! TTTGTTTCTTTTTTTGTGGG+AGG + chr4_3:54810903-54810922 Msa0648310:intron 30.0%
TTAAGTTAATTGTCCAAACG+GGG - chr4_3:54810951-54810970 None:intergenic 30.0%
!!! CAGAAGTTGATATTTTTGAC+CGG + chr4_3:54811582-54811601 Msa0648310:CDS 30.0%
!!! AGAAGTTGATATTTTTGACC+GGG + chr4_3:54811583-54811602 Msa0648310:CDS 30.0%
! TTTCAATAAAGACCTTTTCC+CGG - chr4_3:54811604-54811623 None:intergenic 30.0%
!!! TTTTAGAGCCTTTAATTCGA+AGG + chr4_3:54811627-54811646 Msa0648310:CDS 30.0%
TACAAATTTAACAGCATCCA+TGG - chr4_3:54811690-54811709 None:intergenic 30.0%
AAGAATTGAACTACTTCTTC+TGG + chr4_3:54812026-54812045 Msa0648310:intron 30.0%
CATTGAATGATTGATGTATC+TGG + chr4_3:54812084-54812103 Msa0648310:intron 30.0%
CGTTAAATAACCAATGTATC+TGG - chr4_3:54812123-54812142 None:intergenic 30.0%
TTGTTTATAATAGTGACCGA+AGG + chr4_3:54812158-54812177 Msa0648310:intron 30.0%
TGTTTATAATAGTGACCGAA+GGG + chr4_3:54812159-54812178 Msa0648310:intron 30.0%
! AATGTCTTCAGTGCATTTTA+TGG + chr4_3:54812289-54812308 Msa0648310:intron 30.0%
! AAAGTCTGAAACTCTTCAAT+AGG - chr4_3:54812379-54812398 None:intergenic 30.0%
TGAAGAGTTTCAGACTTTAT+AGG + chr4_3:54812381-54812400 Msa0648310:intron 30.0%
!! ATTCCTTTTGTCCCTTATTT+AGG + chr4_3:54812498-54812517 Msa0648310:intron 30.0%
! TCTATCACTCACTCTTTTAT+TGG + chr4_3:54812869-54812888 Msa0648310:intron 30.0%
! CTATCACTCACTCTTTTATT+GGG + chr4_3:54812870-54812889 Msa0648310:intron 30.0%
!!! TATTTTAACGAAGAGTGCTA+TGG - chr4_3:54813012-54813031 None:intergenic 30.0%
TTGGAAAATCAACCATTGAT+AGG - chr4_3:54813149-54813168 None:intergenic 30.0%
CTTTCATCAAACAAATTCAC+TGG - chr4_3:54813195-54813214 None:intergenic 30.0%
! CAGTGAATTTGTTTGATGAA+AGG + chr4_3:54813193-54813212 Msa0648310:intron 30.0%
GAAAGGAAAAAGTTACATAG+AGG + chr4_3:54813210-54813229 Msa0648310:intron 30.0%
CTAGATTAAGCTAGATTTGT+TGG - chr4_3:54813369-54813388 None:intergenic 30.0%
!!! AATCTTAATCTAGCTTTTGG+TGG + chr4_3:54813409-54813428 Msa0648310:intron 30.0%
!! GAAGCTTTTACAAGCTTTAA+TGG + chr4_3:54813722-54813741 Msa0648310:CDS 30.0%
!! TAATCTTTGACTTGTTTCTG+GGG - chr4_3:54813766-54813785 None:intergenic 30.0%
ACAAGTCAAAGATTAAACTG+AGG + chr4_3:54813771-54813790 Msa0648310:CDS 30.0%
ATGGGAATAATATCTCCAAA+TGG - chr4_3:54813833-54813852 None:intergenic 30.0%
TATTCAGATGTGGCATTTAT+TGG + chr4_3:54813908-54813927 Msa0648310:three_prime_UTR 30.0%
TTAATCTAGTTAGTTGGAGT+TGG + chr4_3:54813937-54813956 Msa0648310:three_prime_UTR 30.0%
ATATTATGAGTGTAACCAGT+TGG - chr4_3:54813994-54814013 None:intergenic 30.0%
CTCATAATATGCAACATTTC+GGG + chr4_3:54814004-54814023 Msa0648310:three_prime_UTR 30.0%
ATCACGTTGCTGTAAAAGTT+AGG + chr4_3:54807505-54807524 Msa0648310:five_prime_UTR 35.0%
GTTGCTGTAAAAGTTAGGAA+AGG + chr4_3:54807510-54807529 Msa0648310:five_prime_UTR 35.0%
! CACGTTTCAAACGACTTTTA+TGG - chr4_3:54807550-54807569 None:intergenic 35.0%
! CATAAAAGTCGTTTGAAACG+TGG + chr4_3:54807548-54807567 Msa0648310:five_prime_UTR 35.0%
AAACTCGTAAAAACGGTGAA+TGG - chr4_3:54807614-54807633 None:intergenic 35.0%
GTGTGACAAACTCGTAAAAA+CGG - chr4_3:54807621-54807640 None:intergenic 35.0%
GAATTGATACATGGGGATTA+GGG - chr4_3:54807776-54807795 None:intergenic 35.0%
GTAATGCGAATTGATACATG+GGG - chr4_3:54807783-54807802 None:intergenic 35.0%
! GCTTTTACATAATCAGCTTC+TGG + chr4_3:54807808-54807827 Msa0648310:intron 35.0%
! TCCGTTCCTTTTTACCTTTT+AGG + chr4_3:54807876-54807895 Msa0648310:intron 35.0%
TATCTTCTCCCAGTTATTCT+TGG - chr4_3:54807979-54807998 None:intergenic 35.0%
CTGGGAGAAGATAGATAATT+AGG + chr4_3:54807986-54808005 Msa0648310:intron 35.0%
GGGAGAAGATAGATAATTAG+GGG + chr4_3:54807988-54808007 Msa0648310:intron 35.0%
CAATTCGAATTGCACTTGAT+TGG + chr4_3:54808092-54808111 Msa0648310:intron 35.0%
CTACTTGCCCATCAATTATA+AGG + chr4_3:54808247-54808266 Msa0648310:intron 35.0%
CAGGACACCTTATAATTGAT+GGG - chr4_3:54808257-54808276 None:intergenic 35.0%
ATATCTAATGCTTTACCGAC+AGG + chr4_3:54808508-54808527 Msa0648310:intron 35.0%
TCTTGAACAGAAAGTAAAGG+TGG - chr4_3:54808608-54808627 None:intergenic 35.0%
! TAATTGTTGAACGGTATTGG+TGG + chr4_3:54808646-54808665 Msa0648310:intron 35.0%
! TGATTATGGACTAACTGAAC+AGG + chr4_3:54808730-54808749 Msa0648310:intron 35.0%
! GATTATGGACTAACTGAACA+GGG + chr4_3:54808731-54808750 Msa0648310:intron 35.0%
! AAAAAATGACTCGGGTTACA+GGG - chr4_3:54809008-54809027 None:intergenic 35.0%
! AAAAAAATGACTCGGGTTAC+AGG - chr4_3:54809009-54809028 None:intergenic 35.0%
TTATAGACCACTTCTGTTGT+AGG + chr4_3:54809100-54809119 Msa0648310:intron 35.0%
!! AGTGGATTGGTTCACATATA+TGG - chr4_3:54809205-54809224 None:intergenic 35.0%
ATTGTGAAATGGTTCCAATC+TGG + chr4_3:54809276-54809295 Msa0648310:intron 35.0%
AAACCAGATTTGAACCAGAT+TGG - chr4_3:54809293-54809312 None:intergenic 35.0%
GAATAGAAAAGGGTCATTGA+GGG - chr4_3:54809446-54809465 None:intergenic 35.0%
TGGCGAAAAGGAATAGAAAA+GGG - chr4_3:54809456-54809475 None:intergenic 35.0%
ATGGCGAAAAGGAATAGAAA+AGG - chr4_3:54809457-54809476 None:intergenic 35.0%
AAGAAGAAGAATGGAAGCTA+TGG - chr4_3:54809476-54809495 None:intergenic 35.0%
ATTCTTTCTCTGTTCTGTCA+TGG + chr4_3:54809542-54809561 Msa0648310:intron 35.0%
! CACTGTTCAAACCATTGTTT+TGG - chr4_3:54809605-54809624 None:intergenic 35.0%
AGATCCAAAGTCACTGTTAT+TGG + chr4_3:54809642-54809661 Msa0648310:intron 35.0%
ACTACCAATAACAGTGACTT+TGG - chr4_3:54809649-54809668 None:intergenic 35.0%
AAAGTCACTGTTATTGGTAG+TGG + chr4_3:54809648-54809667 Msa0648310:intron 35.0%
!! CTGTTATTGGTAGTGGTAAT+TGG + chr4_3:54809655-54809674 Msa0648310:intron 35.0%
!! GTTATTGGTAGTGGTAATTG+GGG + chr4_3:54809657-54809676 Msa0648310:intron 35.0%
! ATGATGGAAATTAGGAATGG+CGG + chr4_3:54809824-54809843 Msa0648310:intron 35.0%
TGGATTTAATGAAATTGGGC+TGG + chr4_3:54809939-54809958 Msa0648310:intron 35.0%
GGATTTAATGAAATTGGGCT+GGG + chr4_3:54809940-54809959 Msa0648310:intron 35.0%
! CGGATTTTGTAAAACAGTTC+AGG + chr4_3:54809984-54810003 Msa0648310:intron 35.0%
TTAAATCTGACCCAGTTTAG+GGG - chr4_3:54810030-54810049 None:intergenic 35.0%
CTTAAATCTGACCCAGTTTA+GGG - chr4_3:54810031-54810050 None:intergenic 35.0%
AAAACGAGGTTAAGGAAGAA+TGG - chr4_3:54810057-54810076 None:intergenic 35.0%
! CACCCTGTTTTCGTAAAAAA+AGG + chr4_3:54810120-54810139 Msa0648310:five_prime_UTR 35.0%
GTGATAGGTGGTTTCAAATT+GGG - chr4_3:54810352-54810371 None:intergenic 35.0%
AGTGATAGGTGGTTTCAAAT+TGG - chr4_3:54810353-54810372 None:intergenic 35.0%
! GGAGTGAAATTGGAAGTTTT+AGG - chr4_3:54810424-54810443 None:intergenic 35.0%
! CTTGCAAGTTGAATCTCATT+CGG - chr4_3:54810481-54810500 None:intergenic 35.0%
!!! GATGGTGTTACAGATCTTTT+TGG + chr4_3:54810758-54810777 Msa0648310:CDS 35.0%
AAGCTACCTTAGAGAGATTA+TGG + chr4_3:54811059-54811078 Msa0648310:intron 35.0%
AGTGAATCAGTATACATGAC+AGG + chr4_3:54811538-54811557 Msa0648310:intron 35.0%
CGGTCAAAAATATCAACTTC+TGG - chr4_3:54811584-54811603 None:intergenic 35.0%
!! TGATATTTTTGACCGGGAAA+AGG + chr4_3:54811589-54811608 Msa0648310:CDS 35.0%
TTTGTAGAGTCTTGCAAAGA+AGG + chr4_3:54811704-54811723 Msa0648310:CDS 35.0%
TGCGGTACAGTACAATAAAT+TGG - chr4_3:54811763-54811782 None:intergenic 35.0%
! TCAGGATGATTTTACAACTG+CGG - chr4_3:54811781-54811800 None:intergenic 35.0%
! CTCTGAAAAGTAACATACTG+TGG - chr4_3:54811936-54811955 None:intergenic 35.0%
GCTGTGCTAATTCTTAAGTT+TGG + chr4_3:54812403-54812422 Msa0648310:intron 35.0%
TAAGGGACAAAAGGAATTCA+TGG - chr4_3:54812495-54812514 None:intergenic 35.0%
TGTCCTAAATAAGGGACAAA+AGG - chr4_3:54812504-54812523 None:intergenic 35.0%
!! TTTTGTCCCTTATTTAGGAC+AGG + chr4_3:54812503-54812522 Msa0648310:intron 35.0%
CAATAGCCTGTCCTAAATAA+GGG - chr4_3:54812512-54812531 None:intergenic 35.0%
ACAATAGCCTGTCCTAAATA+AGG - chr4_3:54812513-54812532 None:intergenic 35.0%
ATTGTTTCAGCTATCACTAG+TGG + chr4_3:54812528-54812547 Msa0648310:CDS 35.0%
!! ATATGCCAAGGTTTTTGAAG+AGG + chr4_3:54812659-54812678 Msa0648310:CDS 35.0%
TGTTACCTCTTCAAAAACCT+TGG - chr4_3:54812667-54812686 None:intergenic 35.0%
TTATTGGGTGAAAACCATGT+GGG - chr4_3:54812951-54812970 None:intergenic 35.0%
! TTTTCACCCAATAAGAGAGT+GGG + chr4_3:54812957-54812976 Msa0648310:intron 35.0%
CTAATACCCACTCTCTTATT+GGG - chr4_3:54812966-54812985 None:intergenic 35.0%
TCTAATACCCACTCTCTTAT+TGG - chr4_3:54812967-54812986 None:intergenic 35.0%
! TGCTTATTCTGCAAACCTTT+TGG - chr4_3:54813041-54813060 None:intergenic 35.0%
TATTCACATGCATCTCTGTT+AGG + chr4_3:54813121-54813140 Msa0648310:intron 35.0%
TAGAGAAAGCTCAAGTTTGA+GGG - chr4_3:54813246-54813265 None:intergenic 35.0%
TAATCTAGCTATTCACCAGT+TGG + chr4_3:54813289-54813308 Msa0648310:intron 35.0%
! TTTTGTTCCGACTAATAGAG+AGG + chr4_3:54813517-54813536 Msa0648310:intron 35.0%
AGAGAAACCTCTCTATTAGT+CGG - chr4_3:54813527-54813546 None:intergenic 35.0%
ACACACATCAGAGAATTGTT+AGG - chr4_3:54813555-54813574 None:intergenic 35.0%
ACTGCTTATTTGAGTATGGA+TGG + chr4_3:54813590-54813609 Msa0648310:intron 35.0%
ATGTCTTGTGAAATTGTTGC+CGG + chr4_3:54813671-54813690 Msa0648310:intron 35.0%
! TTTAATGGACCTGACTTCTA+TGG + chr4_3:54813737-54813756 Msa0648310:CDS 35.0%
TTAAACTGAGGAAATCTCCT+TGG + chr4_3:54813783-54813802 Msa0648310:CDS 35.0%
AAATGGAAACGATAGACACT+CGG - chr4_3:54813816-54813835 None:intergenic 35.0%
GATATTATTCCCATGTTTGC+CGG + chr4_3:54813839-54813858 Msa0648310:CDS 35.0%
TAGGTTTCAGCTTAAATAGC+TGG + chr4_3:54814084-54814103 Msa0648310:three_prime_UTR 35.0%
AAGTCTTAGCATCTGCTACT+TGG - chr4_3:54807720-54807739 None:intergenic 40.0%
CGAATTGATACATGGGGATT+AGG - chr4_3:54807777-54807796 None:intergenic 40.0%
GCAGGACACCTTATAATTGA+TGG - chr4_3:54808258-54808277 None:intergenic 40.0%
GGAACACACATAGATCATCT+TGG - chr4_3:54808587-54808606 None:intergenic 40.0%
TGGGTTCAAGACTTTCTTTC+TGG + chr4_3:54808894-54808913 Msa0648310:intron 40.0%
TGTTCGTTTGCAATACCTGT+TGG + chr4_3:54809124-54809143 Msa0648310:intron 40.0%
GTTCGTTTGCAATACCTGTT+GGG + chr4_3:54809125-54809144 Msa0648310:intron 40.0%
TTCGTTTGCAATACCTGTTG+GGG + chr4_3:54809126-54809145 Msa0648310:intron 40.0%
! AGTTAACCACACAAAAGCGT+AGG - chr4_3:54809158-54809177 None:intergenic 40.0%
! TACGCTTTTGTGTGGTTAAC+TGG + chr4_3:54809157-54809176 Msa0648310:intron 40.0%
! ACGCTTTTGTGTGGTTAACT+GGG + chr4_3:54809158-54809177 Msa0648310:intron 40.0%
! GTTCCAATCTGGTTCAAATC+TGG + chr4_3:54809287-54809306 Msa0648310:intron 40.0%
GGAATAGAAAAGGGTCATTG+AGG - chr4_3:54809447-54809466 None:intergenic 40.0%
GAAATTGCGTCCCAAAACAA+TGG + chr4_3:54809591-54809610 Msa0648310:intron 40.0%
CGACTGCAATTGGAGAAATT+AGG + chr4_3:54809878-54809897 Msa0648310:intron 40.0%
! TTTAATGAAATTGGGCTGGG+TGG + chr4_3:54809943-54809962 Msa0648310:intron 40.0%
! TTAATGAAATTGGGCTGGGT+GGG + chr4_3:54809944-54809963 Msa0648310:intron 40.0%
TTAGGGGTCTGCAAAAAAAC+TGG - chr4_3:54810014-54810033 None:intergenic 40.0%
!!! TTTTTTGCAGACCCCTAAAC+TGG + chr4_3:54810016-54810035 Msa0648310:intron 40.0%
! TTTTTGCAGACCCCTAAACT+GGG + chr4_3:54810017-54810036 Msa0648310:intron 40.0%
GCTTAAATCTGACCCAGTTT+AGG - chr4_3:54810032-54810051 None:intergenic 40.0%
TATATAGTGTGTGCTGCAGA+GGG + chr4_3:54810086-54810105 Msa0648310:intron 40.0%
AACAGCAGAGACAGAAAGAA+TGG + chr4_3:54810216-54810235 Msa0648310:exon 40.0%
TTTCATCTTCATCTTCGCGA+CGG + chr4_3:54810265-54810284 Msa0648310:CDS 40.0%
AAAATGCTTTGCACTGTGAG+GGG - chr4_3:54810311-54810330 None:intergenic 40.0%
CAAAATGCTTTGCACTGTGA+GGG - chr4_3:54810312-54810331 None:intergenic 40.0%
!! ACAGTGCAAAGCATTTTGGA+AGG + chr4_3:54810314-54810333 Msa0648310:CDS 40.0%
!! CAGTGCAAAGCATTTTGGAA+GGG + chr4_3:54810315-54810334 Msa0648310:CDS 40.0%
TGTCATGAGAGGAGTGAAAT+TGG - chr4_3:54810434-54810453 None:intergenic 40.0%
! GTGAGATAAAGTGTCATGAG+AGG - chr4_3:54810445-54810464 None:intergenic 40.0%
GCTACAACAAACTCACAAGA+TGG + chr4_3:54810740-54810759 Msa0648310:CDS 40.0%
TGAGCAAGGTTTGCCATTAT+TGG + chr4_3:54810811-54810830 Msa0648310:CDS 40.0%
!! TAATGTTCTAAAGCCCCGTT+TGG + chr4_3:54810935-54810954 Msa0648310:intron 40.0%
GAGCTTATGAGAACAGCTTA+TGG - chr4_3:54811114-54811133 None:intergenic 40.0%
ATAGTTGACAATGAGCCAAG+TGG + chr4_3:54811404-54811423 Msa0648310:intron 40.0%
CAGTATACATGACAGGTTCA+CGG + chr4_3:54811545-54811564 Msa0648310:intron 40.0%
TCCATCACAACCTTCAATTG+CGG - chr4_3:54811656-54811675 None:intergenic 40.0%
GATGGAGCATATTACTACCA+TGG + chr4_3:54811670-54811689 Msa0648310:CDS 40.0%
CGATTGAGAAGAATATGCTG+AGG - chr4_3:54811847-54811866 None:intergenic 40.0%
! AATCGCAATGCTTTGTTCCA+AGG + chr4_3:54811862-54811881 Msa0648310:CDS 40.0%
! TGGATCTCTCTTTTAAGCAC+GGG - chr4_3:54811916-54811935 None:intergenic 40.0%
! GTGGATCTCTCTTTTAAGCA+CGG - chr4_3:54811917-54811936 None:intergenic 40.0%
! TGATCTGACTTGCATGATGA+AGG + chr4_3:54812261-54812280 Msa0648310:intron 40.0%
TTAGACAAAACCGCATCTCT+TGG + chr4_3:54812461-54812480 Msa0648310:intron 40.0%
GGTTAGATAACCAAGAGATG+CGG - chr4_3:54812474-54812493 None:intergenic 40.0%
! GGAAGTAGACGATTTTTCCT+TGG + chr4_3:54812549-54812568 Msa0648310:CDS 40.0%
TCCACATGATAGGCGTAAAA+AGG + chr4_3:54812584-54812603 Msa0648310:CDS 40.0%
! TCCTTTTTACGCCTATCATG+TGG - chr4_3:54812588-54812607 None:intergenic 40.0%
CGTAAAAAGGAATCTGCTTG+TGG + chr4_3:54812597-54812616 Msa0648310:CDS 40.0%
ATATAGTGATAGAGCAACCG+GGG - chr4_3:54812643-54812662 None:intergenic 40.0%
CATATAGTGATAGAGCAACC+GGG - chr4_3:54812644-54812663 None:intergenic 40.0%
GCATATAGTGATAGAGCAAC+CGG - chr4_3:54812645-54812664 None:intergenic 40.0%
TGCTCTATCACTATATGCCA+AGG + chr4_3:54812647-54812666 Msa0648310:CDS 40.0%
TCACAAATGTGCATATGGGT+AGG + chr4_3:54812742-54812761 Msa0648310:intron 40.0%
! TCACTCACTCTTTTATTGGG+TGG + chr4_3:54812873-54812892 Msa0648310:intron 40.0%
TAAAGTGGTGAGATCCACAT+GGG - chr4_3:54812901-54812920 None:intergenic 40.0%
ATAAAGTGGTGAGATCCACA+TGG - chr4_3:54812902-54812921 None:intergenic 40.0%
TGGATCTCACCACTTTATGT+GGG + chr4_3:54812904-54812923 Msa0648310:intron 40.0%
CTTATTGGGTGAAAACCATG+TGG - chr4_3:54812952-54812971 None:intergenic 40.0%
! GTTTTCACCCAATAAGAGAG+TGG + chr4_3:54812956-54812975 Msa0648310:intron 40.0%
CTCTGTTAGGAACCTATCAA+TGG + chr4_3:54813134-54813153 Msa0648310:intron 40.0%
AGAGAAAGCTCAAGTTTGAG+GGG - chr4_3:54813245-54813264 None:intergenic 40.0%
CTAGAGAAAGCTCAAGTTTG+AGG - chr4_3:54813247-54813266 None:intergenic 40.0%
AGTTCACTGAACTGTTATGG+CGG - chr4_3:54813488-54813507 None:intergenic 40.0%
ACCAGTTCACTGAACTGTTA+TGG - chr4_3:54813491-54813510 None:intergenic 40.0%
TGAAATTGTTGCCGGTGTTT+AGG + chr4_3:54813679-54813698 Msa0648310:intron 40.0%
AATGGAAACGATAGACACTC+GGG - chr4_3:54813815-54813834 None:intergenic 40.0%
GAGTGTCTATCGTTTCCATT+TGG + chr4_3:54813815-54813834 Msa0648310:CDS 40.0%
TTCCCATTCAAGTGTTTCAC+CGG - chr4_3:54813861-54813880 None:intergenic 40.0%
!! GGAAGCATTGCTTATTTGAC+TGG + chr4_3:54813877-54813896 Msa0648310:exon 40.0%
! TTAGTTGGAGTTGGTTACCT+TGG + chr4_3:54813946-54813965 Msa0648310:three_prime_UTR 40.0%
GGGCATTCAGAAATATGATC+AGG + chr4_3:54814129-54814148 Msa0648310:three_prime_UTR 40.0%
! TCTGCTACTTGGAAGAAGGA+TGG - chr4_3:54807709-54807728 None:intergenic 45.0%
! AGCATCTGCTACTTGGAAGA+AGG - chr4_3:54807713-54807732 None:intergenic 45.0%
TGATACATGGGGATTAGGGA+GGG - chr4_3:54807772-54807791 None:intergenic 45.0%
TTGATACATGGGGATTAGGG+AGG - chr4_3:54807773-54807792 None:intergenic 45.0%
!!! ATCAGCTTCTGGTTTTCGCT+AGG + chr4_3:54807819-54807838 Msa0648310:intron 45.0%
! TTTTCGCTAGGTTGTGCTTG+TGG + chr4_3:54807831-54807850 Msa0648310:intron 45.0%
! TAGGGGCATATAGGCAGAAT+TGG + chr4_3:54808005-54808024 Msa0648310:intron 45.0%
GAAATTGTGAGGTTCAGCTC+CGG + chr4_3:54808468-54808487 Msa0648310:intron 45.0%
CGAACAACCTACAACAGAAG+TGG - chr4_3:54809110-54809129 None:intergenic 45.0%
! CTGATTCCTACGCTTTTGTG+TGG + chr4_3:54809149-54809168 Msa0648310:intron 45.0%
TGTGTGGTTAACTGGGACTA+AGG + chr4_3:54809165-54809184 Msa0648310:intron 45.0%
GTGTGGTTAACTGGGACTAA+GGG + chr4_3:54809166-54809185 Msa0648310:intron 45.0%
GGAGAAGACAGTCACAAGTT+TGG - chr4_3:54809422-54809441 None:intergenic 45.0%
TAGAAAAGGGTCATTGAGGG+TGG - chr4_3:54809443-54809462 None:intergenic 45.0%
GAATGGAAGCTATGGCGAAA+AGG - chr4_3:54809468-54809487 None:intergenic 45.0%
ACGAGGTTAAGGAAGAATGG+AGG - chr4_3:54810054-54810073 None:intergenic 45.0%
CTATATAGTGTGTGCTGCAG+AGG + chr4_3:54810085-54810104 Msa0648310:intron 45.0%
CCAAAATGCTTTGCACTGTG+AGG - chr4_3:54810313-54810332 None:intergenic 45.0%
!! CCTCACAGTGCAAAGCATTT+TGG + chr4_3:54810310-54810329 Msa0648310:CDS 45.0%
! GAAGATGTGGTAGTGATAGG+TGG - chr4_3:54810364-54810383 None:intergenic 45.0%
! GCAGAAGATGTGGTAGTGAT+AGG - chr4_3:54810367-54810386 None:intergenic 45.0%
CTTGAGGAAATGGTTGAGCA+AGG + chr4_3:54810797-54810816 Msa0648310:CDS 45.0%
AATGAGCCAAGTGGTTCCTA+TGG + chr4_3:54811413-54811432 Msa0648310:intron 45.0%
ATGTGTCAATGGACCACACT+TGG - chr4_3:54811443-54811462 None:intergenic 45.0%
TGCGGAAGCCTTCGAATTAA+AGG - chr4_3:54811638-54811657 None:intergenic 45.0%
TCCGCAATTGAAGGTTGTGA+TGG + chr4_3:54811652-54811671 Msa0648310:CDS 45.0%
ACGGGAAGACAGTAATTGTG+AGG - chr4_3:54811898-54811917 None:intergenic 45.0%
! CTGATAGTGCTCCACATGAT+AGG + chr4_3:54812574-54812593 Msa0648310:CDS 45.0%
TGCATATGGGTAGGTTTCAG+AGG + chr4_3:54812751-54812770 Msa0648310:intron 45.0%
GCATATGGGTAGGTTTCAGA+GGG + chr4_3:54812752-54812771 Msa0648310:intron 45.0%
TTTATTGGGTGGAACCCATG+TGG + chr4_3:54812884-54812903 Msa0648310:intron 45.0%
GTGGATCTCACCACTTTATG+TGG + chr4_3:54812903-54812922 Msa0648310:intron 45.0%
GAAATGGCTCCCACATAAAG+TGG - chr4_3:54812916-54812935 None:intergenic 45.0%
! TGGGTCTCACACTTTGGAAA+TGG - chr4_3:54812932-54812951 None:intergenic 45.0%
! GGTGAATAGCTTGTACCAAC+TGG - chr4_3:54813307-54813326 None:intergenic 45.0%
GGTACAAGCTATTCACCAGT+TGG + chr4_3:54813310-54813329 Msa0648310:intron 45.0%
! CAGTTCAGTCTTGTACCAAC+TGG - chr4_3:54813328-54813347 None:intergenic 45.0%
GGTACAAGACTGAACTGAAC+TGG + chr4_3:54813331-54813350 Msa0648310:intron 45.0%
!! CTAGCTTTTGGTGGAATCCT+TGG + chr4_3:54813418-54813437 Msa0648310:intron 45.0%
TTCAGTTCAGTCTTGAGCCA+AGG - chr4_3:54813438-54813457 None:intergenic 45.0%
!! ACTGTTATGGCGGTTTGGTT+TGG - chr4_3:54813478-54813497 None:intergenic 45.0%
ACTGAACTGTTATGGCGGTT+TGG - chr4_3:54813483-54813502 None:intergenic 45.0%
GCCATAACAGTTCAGTGAAC+TGG + chr4_3:54813487-54813506 Msa0648310:intron 45.0%
AGTGTTTCACCGGCAAACAT+GGG - chr4_3:54813851-54813870 None:intergenic 45.0%
AAGTGTTTCACCGGCAAACA+TGG - chr4_3:54813852-54813871 None:intergenic 45.0%
TTGCCGGTGAAACACTTGAA+TGG + chr4_3:54813855-54813874 Msa0648310:CDS 45.0%
TGCCGGTGAAACACTTGAAT+GGG + chr4_3:54813856-54813875 Msa0648310:CDS 45.0%
! ACCTGATAGCTTGTACCAAC+TGG + chr4_3:54813976-54813995 Msa0648310:three_prime_UTR 45.0%
! ACCAGTTGGTACAAGCTATC+AGG - chr4_3:54813980-54813999 None:intergenic 45.0%
TTTCGGGCGTATCAGAAATG+CGG + chr4_3:54814020-54814039 Msa0648310:three_prime_UTR 45.0%
!! AAAATTAAATTAAAATTTGA+GGG - chr4_3:54810539-54810558 None:intergenic 5.0%
!! AAAAATTAAATTAAAATTTG+AGG - chr4_3:54810540-54810559 None:intergenic 5.0%
TCATACGCCTCAGCTGTTAC+CGG + chr4_3:54807673-54807692 Msa0648310:five_prime_UTR 50.0%
GAAGGATGGCTTCGAAGATC+CGG - chr4_3:54807695-54807714 None:intergenic 50.0%
GCAGTAGTTCGAGACTCACA+GGG - chr4_3:54807749-54807768 None:intergenic 50.0%
GATACATGGGGATTAGGGAG+GGG - chr4_3:54807771-54807790 None:intergenic 50.0%
TTCTGTCATGGCTCCAGCAT+TGG + chr4_3:54809554-54809573 Msa0648310:intron 50.0%
! GCTCCAGCATTGGAAATCCA+AGG + chr4_3:54809564-54809583 Msa0648310:intron 50.0%
CCTCCTTGGATTTCCAATGC+TGG - chr4_3:54809570-54809589 None:intergenic 50.0%
! CCAGCATTGGAAATCCAAGG+AGG + chr4_3:54809567-54809586 Msa0648310:intron 50.0%
! GGGCTTCAAGTTAGGTTCAC+CGG + chr4_3:54809964-54809983 Msa0648310:intron 50.0%
!! TTACGAAAACAGGGTGCCGA+TGG - chr4_3:54810116-54810135 None:intergenic 50.0%
GGCAGTTGAAGCTTCTCTGT+CGG - chr4_3:54810187-54810206 None:intergenic 50.0%
!! GTCTCTGCTGTTGCTTTCGA+CGG - chr4_3:54810208-54810227 None:intergenic 50.0%
GGTGTGAAGTTGTATCCTGC+TGG + chr4_3:54810716-54810735 Msa0648310:CDS 50.0%
!! GAGTTTGTTGTAGCTCCAGC+AGG - chr4_3:54810734-54810753 None:intergenic 50.0%
TTCCTATGGCAAGCCAAGTG+TGG + chr4_3:54811427-54811446 Msa0648310:intron 50.0%
TACATGACAGGTTCACGGAG+AGG + chr4_3:54811550-54811569 Msa0648310:intron 50.0%
TCGAAGGCTTCCGCAATTGA+AGG + chr4_3:54811643-54811662 Msa0648310:CDS 50.0%
! CGCAATGCTTTGTTCCAAGG+TGG + chr4_3:54811865-54811884 Msa0648310:CDS 50.0%
! GTGGAGCACTATCAGTTCCA+AGG - chr4_3:54812569-54812588 None:intergenic 50.0%
GAATCTGCTTGTGGATGTGC+TGG + chr4_3:54812606-54812625 Msa0648310:CDS 50.0%
TCCAAAGTGTGAGACCCACA+TGG + chr4_3:54812934-54812953 Msa0648310:intron 50.0%
ACCATGTGGGTCTCACACTT+TGG - chr4_3:54812938-54812957 None:intergenic 50.0%
ATTGTTGCCGGTGTTTAGGC+TGG + chr4_3:54813683-54813702 Msa0648310:intron 50.0%
AAGTGCACCAGCCTAAACAC+CGG - chr4_3:54813693-54813712 None:intergenic 50.0%
CTGGGGATACCATAGAAGTC+AGG - chr4_3:54813749-54813768 None:intergenic 50.0%
GGTCTCTGCGTATTCAGATG+TGG + chr4_3:54813898-54813917 Msa0648310:three_prime_UTR 50.0%
GCTATCAGGTTCTGTCACCA+AGG - chr4_3:54813966-54813985 None:intergenic 50.0%
TTCGGGCGTATCAGAAATGC+GGG + chr4_3:54814021-54814040 Msa0648310:three_prime_UTR 50.0%
CGAAGATCCGGTAACAGCTG+AGG - chr4_3:54807683-54807702 None:intergenic 55.0%
GGCAGTAGTTCGAGACTCAC+AGG - chr4_3:54807750-54807769 None:intergenic 55.0%
!! ACTGGGACTAAGGGTGTTCG+TGG + chr4_3:54809175-54809194 Msa0648310:intron 55.0%
GGGACGCAATTTCTCCTCCT+TGG - chr4_3:54809584-54809603 None:intergenic 55.0%
TGCAGTCGCGACTCAACGTA+TGG - chr4_3:54809866-54809885 None:intergenic 55.0%
CGTTGAGTCGCGACTGCAAT+TGG + chr4_3:54809868-54809887 Msa0648310:intron 55.0%
TGCTGCAGAGGGTTCACCAT+CGG + chr4_3:54810097-54810116 Msa0648310:five_prime_UTR 55.0%
CAACGCTGCAGAGTTGAGCA+AGG + chr4_3:54810161-54810180 Msa0648310:five_prime_UTR 55.0%
GGCTTGCCATAGGAACCACT+TGG - chr4_3:54811422-54811441 None:intergenic 55.0%
!! GACCACACTTGGCTTGCCAT+AGG - chr4_3:54811432-54811451 None:intergenic 55.0%
TGCTGGCATCTACAACTCCC+CGG + chr4_3:54812623-54812642 Msa0648310:CDS 55.0%
AGACACTCGGGTACTCTCCA+AGG - chr4_3:54813803-54813822 None:intergenic 55.0%
GGTGCAGTTGCTGCAGCTCA+AGG + chr4_3:54808855-54808874 Msa0648310:intron 60.0%
GCGTAGGAATCAGCCCCAAC+AGG - chr4_3:54809142-54809161 None:intergenic 60.0%
! GGCTGGGTGGGCTTCAAGTT+AGG + chr4_3:54809956-54809975 Msa0648310:intron 60.0%
TGTGAGGCTGCAAGCCACCT+TGG - chr4_3:54811882-54811901 None:intergenic 60.0%
GGCTGGTGCACTTGACAAGC+TGG + chr4_3:54813700-54813719 Msa0648310:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 54807473 54814311 54807473 ID=Msa0648310;Name=Msa0648310
chr4_3 mRNA 54807473 54814311 54807473 ID=Msa0648310-mRNA-1;Parent=Msa0648310;Name=Msa0648310-mRNA-1;_AED=0.28;_eAED=0.28;_QI=419|1|1|1|0.83|0.71|7|416|346
chr4_3 exon 54807473 54807749 54807473 ID=Msa0648310-mRNA-1:exon:13896;Parent=Msa0648310-mRNA-1
chr4_3 exon 54810093 54810499 54810093 ID=Msa0648310-mRNA-1:exon:13897;Parent=Msa0648310-mRNA-1
chr4_3 exon 54810696 54810832 54810696 ID=Msa0648310-mRNA-1:exon:13898;Parent=Msa0648310-mRNA-1
chr4_3 exon 54811560 54811725 54811560 ID=Msa0648310-mRNA-1:exon:13899;Parent=Msa0648310-mRNA-1
chr4_3 exon 54811821 54811937 54811821 ID=Msa0648310-mRNA-1:exon:13900;Parent=Msa0648310-mRNA-1
chr4_3 exon 54812520 54812680 54812520 ID=Msa0648310-mRNA-1:exon:13901;Parent=Msa0648310-mRNA-1
chr4_3 exon 54813701 54814311 54813701 ID=Msa0648310-mRNA-1:exon:13902;Parent=Msa0648310-mRNA-1
chr4_3 five_prime_UTR 54807473 54807749 54807473 ID=Msa0648310-mRNA-1:five_prime_utr;Parent=Msa0648310-mRNA-1
chr4_3 five_prime_UTR 54810093 54810234 54810093 ID=Msa0648310-mRNA-1:five_prime_utr;Parent=Msa0648310-mRNA-1
chr4_3 CDS 54810235 54810499 54810235 ID=Msa0648310-mRNA-1:cds;Parent=Msa0648310-mRNA-1
chr4_3 CDS 54810696 54810832 54810696 ID=Msa0648310-mRNA-1:cds;Parent=Msa0648310-mRNA-1
chr4_3 CDS 54811560 54811725 54811560 ID=Msa0648310-mRNA-1:cds;Parent=Msa0648310-mRNA-1
chr4_3 CDS 54811821 54811937 54811821 ID=Msa0648310-mRNA-1:cds;Parent=Msa0648310-mRNA-1
chr4_3 CDS 54812520 54812680 54812520 ID=Msa0648310-mRNA-1:cds;Parent=Msa0648310-mRNA-1
chr4_3 CDS 54813701 54813895 54813701 ID=Msa0648310-mRNA-1:cds;Parent=Msa0648310-mRNA-1
chr4_3 three_prime_UTR 54813896 54814311 54813896 ID=Msa0648310-mRNA-1:three_prime_utr;Parent=Msa0648310-mRNA-1
Gene Sequence

>Msa0648310

ATGGAGCTAACAATTGCACAACCTGATGATTTTCATCTTCATCTTCGCGACGGTGCTCTTCTTGAAGCTGTAACCCCTCACAGTGCAAAGCATTTTGGAAGGGCTATTATCATGCCCAATTTGAAACCACCTATCACTACCACATCTTCTGCTATTTCTTATCGAGAATCTATTTTGAAAGCAATACCTAAAACTTCCAATTTCACTCCTCTCATGACACTTTATCTCACTGATGCTACAACTCCGAATGAGATTCAACTTGCAAAAAAAAGTGGATTTGTTTATGGTGTGAAGTTGTATCCTGCTGGAGCTACAACAAACTCACAAGATGGTGTTACAGATCTTTTTGGAAATTGTTATTCTGTTCTTGAGGAAATGGTTGAGCAAGGTTTGCCATTATTGGTTCACGGAGAGGTTACAAATCCAGAAGTTGATATTTTTGACCGGGAAAAGGTCTTTATTGAAACAATTTTAGAGCCTTTAATTCGAAGGCTTCCGCAATTGAAGGTTGTGATGGAGCATATTACTACCATGGATGCTGTTAAATTTGTAGAGTCTTGCAAAGAAGGTTATGTAGCAGCAACAGTTACACCTCAGCATATTCTTCTCAATCGCAATGCTTTGTTCCAAGGTGGCTTGCAGCCTCACAATTACTGTCTTCCCGTGCTTAAAAGAGAGATCCACAGACAGGCTATTGTTTCAGCTATCACTAGTGGAAGTAGACGATTTTTCCTTGGAACTGATAGTGCTCCACATGATAGGCGTAAAAAGGAATCTGCTTGTGGATGTGCTGGCATCTACAACTCCCCGGTTGCTCTATCACTATATGCCAAGGTTTTTGAAGAGGCTGGTGCACTTGACAAGCTGGAAGCTTTTACAAGCTTTAATGGACCTGACTTCTATGGTATCCCCAGAAACAAGTCAAAGATTAAACTGAGGAAATCTCCTTGGAGAGTACCCGAGTGTCTATCGTTTCCATTTGGAGATATTATTCCCATGTTTGCCGGTGAAACACTTGAATGGGAAGCATTGCTTATTTGA
Protein sequence

>Msa0648310

MELTIAQPDDFHLHLRDGALLEAVTPHSAKHFGRAIIMPNLKPPITTTSSAISYRESILKAIPKTSNFTPLMTLYLTDATTPNEIQLAKKSGFVYGVKLYPAGATTNSQDGVTDLFGNCYSVLEEMVEQGLPLLVHGEVTNPEVDIFDREKVFIETILEPLIRRLPQLKVVMEHITTMDAVKFVESCKEGYVAATVTPQHILLNRNALFQGGLQPHNYCLPVLKREIHRQAIVSAITSGSRRFFLGTDSAPHDRRKKESACGCAGIYNSPVALSLYAKVFEEAGALDKLEAFTSFNGPDFYGIPRNKSKIKLRKSPWRVPECLSFPFGDIIPMFAGETLEWEALLI*