AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1364110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1364110 MtrunA17_Chr2g0329931 99.758 413 1 0 1 413 1 413 0.0 850
Msa1364110 MtrunA17_Chr8g0342861 94.189 413 24 0 1 413 1 413 0.0 808
Msa1364110 MtrunA17_Chr2g0299681 92.978 413 29 0 1 413 1 413 0.0 800
Msa1364110 MtrunA17_Chr4g0070981 91.525 413 35 0 1 413 1 413 0.0 781
Msa1364110 MtrunA17_Chr2g0297261 64.611 373 132 0 41 413 34 406 0.0 517
Msa1364110 MtrunA17_Chr1g0169331 61.168 394 116 5 56 413 6 398 3.37e-164 467
Msa1364110 MtrunA17_Chr8g0342851 63.584 346 94 4 71 413 3 319 8.18e-145 414
Msa1364110 MtrunA17_Chr7g0247181 40.984 366 212 4 42 406 141 503 7.04e-89 278
Msa1364110 MtrunA17_Chr7g0247191 41.257 366 211 4 42 406 151 513 8.71e-89 278
Msa1364110 MtrunA17_Chr7g0247221 40.984 366 212 4 42 406 144 506 1.05e-88 278
Msa1364110 MtrunA17_Chr4g0003441 39.370 381 224 7 35 409 101 480 2.20e-76 245
Msa1364110 MtrunA17_Chr1g0149251 39.169 337 199 6 78 409 1 336 4.83e-71 227
Msa1364110 MtrunA17_Chr3g0107851 35.467 375 220 5 40 396 116 486 1.53e-67 224
Msa1364110 MtrunA17_Chr1g0179761 36.341 399 214 13 41 405 80 472 1.33e-65 217
Msa1364110 MtrunA17_Chr2g0330401 35.068 365 223 3 40 394 95 455 4.76e-65 216
Msa1364110 MtrunA17_Chr7g0271121 38.596 342 195 7 66 396 131 468 1.59e-62 214
Msa1364110 MtrunA17_Chr4g0076491 34.301 379 217 7 47 397 293 667 3.54e-62 213
Msa1364110 MtrunA17_Chr7g0270131 34.530 362 230 4 40 394 231 592 5.24e-62 213
Msa1364110 MtrunA17_Chr6g0449741 34.748 377 216 7 47 397 255 627 1.35e-61 210
Msa1364110 MtrunA17_Chr3g0095031 34.865 370 230 5 45 406 94 460 4.57e-61 207
Msa1364110 MtrunA17_Chr6g0483491 33.065 372 245 3 40 408 9 379 6.54e-60 201
Msa1364110 MtrunA17_Chr3g0121351 34.190 389 233 7 41 407 145 532 9.96e-60 204
Msa1364110 MtrunA17_Chr7g0236841 33.065 372 245 3 40 408 9 379 1.47e-59 200
Msa1364110 MtrunA17_Chr5g0442191 34.043 376 235 6 45 411 85 456 3.61e-59 202
Msa1364110 MtrunA17_Chr1g0193491 33.508 382 235 9 45 412 118 494 3.56e-58 201
Msa1364110 MtrunA17_Chr2g0277821 34.286 385 237 6 40 412 503 883 9.27e-57 201
Msa1364110 MtrunA17_Chr4g0040761 32.976 373 240 5 42 407 20 389 1.73e-56 198
Msa1364110 MtrunA17_Chr2g0293631 33.978 362 232 4 41 396 496 856 5.73e-56 199
Msa1364110 MtrunA17_Chr2g0310581 34.167 360 232 2 41 395 53 412 1.01e-55 191
Msa1364110 MtrunA17_Chr4g0063551 33.418 392 232 7 42 407 141 529 3.24e-55 193
Msa1364110 MtrunA17_Chr1g0176041 33.165 395 230 9 40 407 153 540 6.45e-55 191
Msa1364110 MtrunA17_Chr1g0157691 30.513 390 252 8 40 413 146 532 6.99e-54 188
Msa1364110 MtrunA17_Chr1g0200181 30.513 390 252 8 40 413 144 530 3.72e-53 186
Msa1364110 MtrunA17_Chr6g0449911 31.316 380 250 5 41 412 165 541 6.06e-52 185
Msa1364110 MtrunA17_Chr3g0098121 32.812 384 239 7 27 396 135 513 4.71e-51 183
Msa1364110 MtrunA17_Chr5g0409981 33.803 355 221 5 42 384 105 457 1.46e-50 178
Msa1364110 MtrunA17_Chr6g0461751 31.978 369 229 7 41 394 140 501 5.07e-48 171
Msa1364110 MtrunA17_Chr2g0300291 31.593 383 246 7 27 396 124 503 2.04e-46 170
Msa1364110 MtrunA17_Chr2g0307471 31.522 368 229 12 40 391 90 450 3.79e-43 158
Msa1364110 MtrunA17_Chr7g0263771 28.084 381 267 4 34 412 129 504 1.39e-42 158
Msa1364110 MtrunA17_Chr4g0062301 30.726 358 226 10 50 391 106 457 1.83e-42 157
Msa1364110 MtrunA17_Chr6g0475251 31.054 351 215 6 45 380 115 453 2.19e-42 158
Msa1364110 MtrunA17_Chr4g0058591 31.595 326 213 4 24 343 189 510 1.90e-40 150
Msa1364110 MtrunA17_Chr2g0309551 26.173 405 234 7 40 382 108 509 1.04e-39 149
Msa1364110 MtrunA17_Chr8g0347171 29.427 384 244 10 42 406 161 536 1.39e-38 147
Msa1364110 MtrunA17_Chr3g0114081 29.396 364 229 7 47 383 22 384 1.42e-38 146
Msa1364110 MtrunA17_Chr1g0204391 28.926 363 223 5 49 380 52 410 3.97e-38 145
Msa1364110 MtrunA17_Chr8g0347161 28.646 384 247 9 42 406 103 478 1.62e-37 143
Msa1364110 MtrunA17_Chr7g0236831 26.077 441 236 10 41 399 163 595 4.00e-37 143
Msa1364110 MtrunA17_Chr8g0347151 28.385 384 248 8 42 406 202 577 2.13e-36 140
Msa1364110 MtrunA17_Chr8g0386451 27.344 384 257 7 42 406 289 669 7.67e-35 137
Msa1364110 MtrunA17_Chr4g0025141 37.198 207 115 5 214 405 14 220 9.49e-35 129
Msa1364110 MtrunA17_Chr1g0192021 26.406 409 246 8 41 397 26 431 5.47e-34 133
Msa1364110 MtrunA17_Chr6g0466611 28.312 385 238 11 41 396 142 517 2.15e-33 132
Msa1364110 MtrunA17_Chr4g0034411 28.947 342 224 10 68 395 102 438 2.63e-33 132
Msa1364110 MtrunA17_Chr3g0137901 39.634 164 97 2 247 409 10 172 1.40e-32 121
Msa1364110 MtrunA17_Chr5g0443991 27.062 388 261 9 46 413 81 466 2.09e-32 129
Msa1364110 MtrunA17_Chr5g0429221 26.494 385 263 7 40 413 2 377 4.99e-28 114
Msa1364110 MtrunA17_Chr3g0137891 42.236 161 90 3 78 235 1 161 2.91e-27 108
Msa1364110 MtrunA17_Chr3g0145781 26.933 401 239 13 24 383 120 507 1.43e-25 108
Msa1364110 MtrunA17_Chr4g0039471 36.126 191 119 1 36 223 218 408 6.08e-24 102
Msa1364110 MtrunA17_Chr4g0025131 34.270 178 111 4 24 197 40 215 2.64e-23 99.0
Msa1364110 MtrunA17_Chr4g0074521 25.445 393 237 14 49 399 90 468 2.96e-23 101
Msa1364110 MtrunA17_Chr4g0004301 23.499 383 214 6 79 389 71 446 8.28e-23 100
Msa1364110 MtrunA17_Chr4g0025101 31.034 232 94 7 198 405 7 196 1.73e-22 95.1
Msa1364110 MtrunA17_Chr4g0062321 29.237 236 157 6 117 348 4 233 3.11e-22 95.1
Msa1364110 MtrunA17_Chr5g0434301 22.872 376 225 6 79 389 71 446 4.31e-22 98.2
Msa1364110 MtrunA17_Chr8g0349951 36.429 140 82 2 40 175 9 145 4.39e-19 84.0
Msa1364110 MtrunA17_Chr4g0029191 31.285 179 114 4 41 210 44 222 9.38e-18 85.5
Msa1364110 MtrunA17_Chr4g0029191 35.106 94 61 0 310 403 392 485 8.37e-14 73.2
Msa1364110 MtrunA17_Chr1g0155201 29.249 253 147 11 152 395 6 235 2.09e-17 83.2
Msa1364110 MtrunA17_Chr2g0301281 30.726 179 115 4 41 210 41 219 2.96e-17 84.0
Msa1364110 MtrunA17_Chr2g0301281 35.052 97 62 1 310 406 389 484 2.35e-14 75.1
Msa1364110 MtrunA17_Chr8g0354761 23.889 360 244 13 64 404 31 379 6.22e-17 82.4
Msa1364110 MtrunA17_Chr4g0058601 47.170 53 28 0 344 396 9 61 8.48e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1364110 AT1G54270.1 92.995 414 26 2 1 413 1 412 0.0 792
Msa1364110 AT3G13920.1 92.512 414 28 2 1 413 1 412 0.0 788
Msa1364110 AT1G54270.2 91.787 414 26 3 1 413 1 407 0.0 775
Msa1364110 AT3G13920.4 91.304 414 28 3 1 413 1 407 0.0 770
Msa1364110 AT1G72730.1 89.372 414 43 1 1 413 1 414 0.0 769
Msa1364110 AT3G13920.3 94.330 388 21 1 27 413 15 402 0.0 755
Msa1364110 AT3G13920.2 92.366 393 27 2 1 392 1 391 0.0 746
Msa1364110 AT3G13920.5 92.366 393 27 2 1 392 5 395 0.0 745
Msa1364110 AT3G19760.1 62.725 389 138 1 25 413 27 408 0.0 511
Msa1364110 AT1G51380.1 58.108 370 155 0 40 409 22 391 1.33e-162 462
Msa1364110 AT1G51380.2 58.103 253 106 0 40 292 22 274 7.77e-108 319
Msa1364110 AT3G61240.2 40.650 369 215 4 42 409 126 491 2.91e-90 281
Msa1364110 AT3G61240.1 40.650 369 215 4 42 409 126 491 2.91e-90 281
Msa1364110 AT2G45810.1 40.872 367 213 4 42 407 156 519 1.25e-88 278
Msa1364110 AT4G00660.1 39.837 369 218 4 42 409 133 498 1.34e-88 278
Msa1364110 AT4G00660.2 39.837 369 218 4 42 409 133 498 1.34e-88 278
Msa1364110 AT1G51380.4 55.660 212 94 0 40 251 22 233 2.12e-82 255
Msa1364110 AT1G51380.3 55.660 212 94 0 40 251 22 233 3.99e-82 254
Msa1364110 AT5G11170.1 38.660 388 231 7 28 409 33 419 2.21e-77 246
Msa1364110 AT5G11200.1 38.660 388 231 7 28 409 33 419 2.21e-77 246
Msa1364110 AT5G11170.2 39.169 337 199 6 78 409 1 336 1.07e-69 224
Msa1364110 AT5G11200.3 34.965 429 231 8 28 409 33 460 6.44e-69 225
Msa1364110 AT3G53110.1 34.988 403 235 10 26 407 81 477 2.12e-67 222
Msa1364110 AT1G55150.1 34.626 361 230 2 40 394 99 459 9.86e-66 218
Msa1364110 AT1G55150.2 34.626 361 230 2 40 394 124 484 1.13e-65 218
Msa1364110 AT5G26742.1 35.238 420 243 10 9 413 80 485 2.34e-64 219
Msa1364110 AT5G26742.2 35.238 420 243 10 9 413 80 485 2.37e-64 219
Msa1364110 AT5G63120.2 34.085 399 247 4 24 413 153 544 3.82e-64 216
Msa1364110 AT5G26742.3 36.458 384 212 10 45 413 26 392 1.50e-63 216
Msa1364110 AT2G33730.1 34.987 383 221 6 41 397 314 694 1.81e-63 217
Msa1364110 AT3G22310.2 35.484 372 227 6 45 407 121 488 1.59e-62 212
Msa1364110 AT3G22310.1 35.484 372 227 6 45 407 121 488 2.09e-62 212
Msa1364110 AT3G22330.1 35.215 372 228 6 45 407 109 476 3.80e-62 211
Msa1364110 AT2G47330.1 34.359 390 238 7 37 412 222 607 2.96e-60 209
Msa1364110 AT1G77030.1 32.527 372 243 4 42 407 30 399 1.68e-59 207
Msa1364110 AT3G06480.1 35.156 384 230 6 41 412 436 812 5.11e-59 208
Msa1364110 AT1G20920.2 32.850 414 263 7 9 412 163 571 1.35e-58 205
Msa1364110 AT3G58510.1 33.247 385 237 7 41 406 152 535 4.74e-58 200
Msa1364110 AT3G58510.3 33.247 385 237 7 41 406 152 535 4.74e-58 200
Msa1364110 AT3G58510.2 33.247 385 237 7 41 406 152 535 4.74e-58 200
Msa1364110 AT2G42520.2 35.000 400 230 10 33 404 149 546 6.27e-58 200
Msa1364110 AT2G42520.1 35.000 400 230 10 33 404 149 546 6.27e-58 200
Msa1364110 AT2G42520.3 35.000 400 230 10 33 404 149 546 6.27e-58 200
Msa1364110 AT3G58570.1 33.753 397 240 8 33 406 136 532 3.82e-57 198
Msa1364110 AT5G14610.2 32.808 381 243 6 41 412 162 538 5.38e-57 198
Msa1364110 AT5G14610.6 32.808 381 243 6 41 412 162 538 5.94e-57 198
Msa1364110 AT1G20920.4 34.301 379 233 6 46 412 535 909 6.65e-57 202
Msa1364110 AT1G20920.6 34.301 379 233 6 46 412 535 909 6.65e-57 202
Msa1364110 AT1G20920.3 34.301 379 233 6 46 412 535 909 6.65e-57 202
Msa1364110 AT1G20920.7 34.301 379 233 6 46 412 535 909 6.65e-57 202
Msa1364110 AT1G20920.5 34.301 379 233 6 46 412 535 909 6.65e-57 202
Msa1364110 AT1G20920.1 34.301 379 233 6 46 412 535 909 6.65e-57 202
Msa1364110 AT5G14610.5 32.808 381 243 6 41 412 170 546 6.90e-57 198
Msa1364110 AT5G60990.1 32.071 396 245 5 36 413 5 394 1.72e-56 192
Msa1364110 AT3G01540.1 34.555 382 235 10 41 412 159 535 4.26e-56 195
Msa1364110 AT3G01540.4 34.555 382 235 10 41 412 159 535 4.75e-56 195
Msa1364110 AT3G01540.2 34.555 382 235 10 41 412 159 535 4.75e-56 195
Msa1364110 AT3G01540.3 34.555 382 235 10 41 412 159 535 4.75e-56 195
Msa1364110 AT1G16280.1 33.158 380 238 5 30 396 43 419 1.50e-55 191
Msa1364110 AT4G16630.1 33.867 375 239 4 31 396 155 529 2.13e-54 193
Msa1364110 AT5G14610.7 32.153 367 236 6 55 412 45 407 2.00e-53 186
Msa1364110 AT5G14610.3 32.153 367 236 6 55 412 45 407 2.00e-53 186
Msa1364110 AT5G11200.2 31.991 447 238 11 28 409 33 478 8.62e-53 183
Msa1364110 AT3G02065.3 32.603 365 233 5 41 394 111 473 2.96e-52 182
Msa1364110 AT3G02065.2 32.603 365 233 5 41 394 111 473 2.96e-52 182
Msa1364110 AT5G14610.1 32.249 369 237 6 53 412 242 606 3.55e-52 186
Msa1364110 AT4G33370.1 30.848 389 250 8 40 412 97 482 6.76e-52 182
Msa1364110 AT1G28180.1 34.694 343 208 6 79 410 12 349 1.49e-51 177
Msa1364110 AT5G51280.1 30.591 389 251 7 40 412 146 531 1.66e-51 182
Msa1364110 AT1G31970.1 33.075 387 241 6 40 413 116 497 2.44e-51 181
Msa1364110 AT3G18600.1 31.649 376 247 6 41 408 90 463 3.15e-49 176
Msa1364110 AT3G09620.1 32.447 376 209 7 46 409 402 744 4.93e-49 179
Msa1364110 AT3G09620.2 32.447 376 209 7 46 409 403 745 5.33e-49 179
Msa1364110 AT3G09720.2 29.921 381 260 4 34 412 138 513 1.60e-48 173
Msa1364110 AT3G09720.1 29.921 381 260 4 34 412 138 513 1.60e-48 173
Msa1364110 AT3G02065.1 32.628 331 210 5 75 394 8 336 7.75e-47 165
Msa1364110 AT1G12770.2 27.363 402 230 6 40 381 110 509 9.16e-47 169
Msa1364110 AT1G12770.1 27.363 402 230 6 40 381 110 509 9.16e-47 169
Msa1364110 AT5G65900.1 30.667 375 251 6 38 404 152 525 1.45e-45 167
Msa1364110 AT5G62190.1 32.181 376 227 9 55 411 111 477 2.55e-45 166
Msa1364110 AT5G63120.3 33.435 329 203 4 24 343 153 474 1.48e-44 161
Msa1364110 AT5G63120.4 33.435 329 203 4 24 343 153 474 1.48e-44 161
Msa1364110 AT5G63120.5 33.435 329 203 4 24 343 153 474 1.48e-44 161
Msa1364110 AT5G63120.1 33.435 329 203 4 24 343 153 474 1.92e-44 161
Msa1364110 AT3G06480.2 33.333 324 197 6 41 352 436 752 1.75e-41 156
Msa1364110 AT5G05450.1 30.168 358 225 7 50 383 26 382 6.00e-41 153
Msa1364110 AT1G71370.1 30.114 352 230 7 47 383 23 373 3.08e-40 151
Msa1364110 AT5G14610.4 31.024 332 216 6 41 363 170 497 4.02e-40 149
Msa1364110 AT5G63630.1 29.948 384 242 8 42 406 56 431 1.02e-38 146
Msa1364110 AT5G08620.1 30.151 398 235 9 42 412 82 463 1.77e-38 146
Msa1364110 AT5G08610.1 30.318 409 237 11 28 406 369 759 1.88e-38 148
Msa1364110 AT5G63630.2 29.948 384 242 8 42 406 250 625 1.48e-37 145
Msa1364110 AT2G07750.1 27.157 394 248 10 42 407 377 759 3.87e-35 138
Msa1364110 AT1G63250.1 26.866 402 248 10 35 406 321 706 1.19e-33 134
Msa1364110 AT4G34910.1 26.098 387 229 8 40 372 46 429 3.62e-32 129
Msa1364110 AT5G54910.1 27.273 396 263 12 17 396 49 435 1.25e-31 127
Msa1364110 AT5G19210.2 27.763 389 231 12 49 399 85 461 1.60e-31 125
Msa1364110 AT2G40700.1 25.225 444 251 12 41 403 31 474 3.67e-31 125
Msa1364110 AT4G09730.1 26.753 385 246 9 40 396 112 488 4.10e-31 125
Msa1364110 AT3G06980.1 28.500 400 239 14 21 383 360 749 5.58e-28 117
Msa1364110 AT1G71280.2 27.419 310 189 9 47 345 24 308 2.43e-26 108
Msa1364110 AT4G15850.1 25.648 386 211 13 79 394 74 453 4.85e-26 110
Msa1364110 AT1G71280.1 27.419 310 189 9 47 345 24 308 1.65e-25 108
Msa1364110 AT3G16840.1 32.821 195 107 4 41 211 191 385 1.92e-19 91.3
Msa1364110 AT3G16840.2 32.821 195 107 4 41 211 192 386 2.01e-19 91.3
Msa1364110 AT5G19210.1 26.032 315 183 11 123 399 2 304 2.00e-17 83.2
Msa1364110 AT5G19210.3 26.032 315 183 11 123 399 2 304 2.00e-17 83.2
Msa1364110 AT1G28180.2 37.273 110 55 2 79 177 12 118 1.02e-11 62.4

Find 118 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGCATAAGGTTTAAATTTA+AGG 0.096044 tig0018106:+181445 None:intergenic
TGTTTAATCACTTAATTATT+AGG 0.102047 tig0018106:-181511 Msa1364110:three_prime_UTR
GAACACTCCAACCTGAATTT+TGG 0.146444 tig0018106:+182263 None:intergenic
TCGAAGAAAGATTGAAAATT+AGG 0.147639 tig0018106:+184513 None:intergenic
GAAGAGTGAGAGAGAGATTT+AGG 0.185365 tig0018106:+184576 None:intergenic
TGACATGTATGATATAAATA+AGG 0.246109 tig0018106:+181417 None:intergenic
TCTCATTACCACTGACCTTT+TGG 0.272997 tig0018106:-181902 Msa1364110:CDS
GTTTAATCACTTAATTATTA+GGG 0.282354 tig0018106:-181510 Msa1364110:three_prime_UTR
CGGCGCAGATCCGAGGAGTT+TGG 0.291726 tig0018106:-184541 Msa1364110:five_prime_UTR
ACATCTGACTCTATTTATAA+TGG 0.292865 tig0018106:-181547 Msa1364110:three_prime_UTR
ACATCGAGACCCTTGATAAA+AGG 0.302219 tig0018106:+182934 None:intergenic
TGCTGTGCCAGCTCCCTTGT+TGG 0.308505 tig0018106:+182805 None:intergenic
TCAGTGCCAGGCTTTGGTTT+TGG 0.312026 tig0018106:-182830 Msa1364110:CDS
GTTGCTGCCACCCAAAATTC+AGG 0.315611 tig0018106:-182274 Msa1364110:CDS
CGAAGAAAGATTGAAAATTA+GGG 0.317411 tig0018106:+184514 None:intergenic
GCTGTGCCAGCTCCCTTGTT+GGG 0.317476 tig0018106:+182806 None:intergenic
TTGCATTAAAATGTTTGTTT+TGG 0.318028 tig0018106:-182608 Msa1364110:CDS
CGCTTTACCAGAATTCTAAC+TGG 0.324777 tig0018106:+182186 None:intergenic
CAGATGTCTTTGAACTCTAA+TGG 0.325903 tig0018106:+181563 None:intergenic
AAGACAGCGACGTTCTGTTC+TGG 0.339543 tig0018106:-182883 Msa1364110:CDS
TTGTTCTTTGTTAAGTCATC+GGG 0.340229 tig0018106:-181644 Msa1364110:three_prime_UTR
TGGTGATTACCTTGGTGTTA+AGG 0.345997 tig0018106:-182758 Msa1364110:CDS
TGATGATATCACGAGTGTTT+TGG 0.362515 tig0018106:+181956 None:intergenic
GAATAAGCCAGTTAGAATTC+TGG 0.365648 tig0018106:-182193 Msa1364110:CDS
GGCGCAGATCCGAGGAGTTT+GGG 0.371205 tig0018106:-184540 Msa1364110:five_prime_UTR
CTGAGAGGCATATATGCTTA+TGG 0.371983 tig0018106:-183557 Msa1364110:intron
GTATCAAATTGTGAACCTTC+CGG 0.388344 tig0018106:+183774 None:intergenic
TTATGGTTTGGTTCAGTGCC+AGG 0.388767 tig0018106:-182842 Msa1364110:CDS
AAAACTATCTCCATCGTATT+GGG 0.393330 tig0018106:-181816 Msa1364110:CDS
CAACAACATGGACACCAGTT+TGG 0.395614 tig0018106:+182686 None:intergenic
CTTGTGATCTCCAGAGCCTC+TGG 0.397309 tig0018106:+182225 None:intergenic
GCAGCAGCTTGATTATGGTT+TGG 0.397488 tig0018106:-182854 Msa1364110:CDS
TTTGGTTCAGTGCCAGGCTT+TGG 0.398715 tig0018106:-182836 Msa1364110:CDS
GAAAACTATCTCCATCGTAT+TGG 0.406801 tig0018106:-181817 Msa1364110:CDS
ATTGGGCGAAGTGGGCGTTT+TGG 0.409374 tig0018106:-181799 Msa1364110:CDS
AAATAAGGGTTGCTAGCATA+AGG 0.415054 tig0018106:+181432 None:intergenic
AGATGTCTTTGAACTCTAAT+GGG 0.418418 tig0018106:+181564 None:intergenic
CATGTTGTTGTTGGTACTCC+TGG 0.424537 tig0018106:-182673 Msa1364110:CDS
AATGCTTTCACGTGGTTTCA+AGG 0.432515 tig0018106:-182572 Msa1364110:CDS
CCCCTTTGCTGTATTGCAGA+TGG 0.433851 tig0018106:+182964 None:intergenic
TTTGTTCTTTGTTAAGTCAT+CGG 0.435160 tig0018106:-181645 Msa1364110:three_prime_UTR
GCCATCTGCAATACAGCAAA+GGG 0.435434 tig0018106:-182965 Msa1364110:CDS
TTCATGAACTTCATCGTATG+AGG 0.438056 tig0018106:+183613 None:intergenic
CGTGATGAATTGACCCTTGA+GGG 0.439342 tig0018106:-182165 Msa1364110:CDS
CATGGGTGGCTGAGACAGTA+TGG 0.446776 tig0018106:+181989 None:intergenic
TGATGTTCAGCAAGTGTCTC+TGG 0.448249 tig0018106:-181869 Msa1364110:CDS
CAGCAGGCTCAGTCAGGAAC+TGG 0.451120 tig0018106:-182907 Msa1364110:CDS
GATCTGCGCCGTGGAGTTGA+AGG 0.453865 tig0018106:+184553 None:intergenic
TACAATGCCTCCAGAGGCTC+TGG 0.459621 tig0018106:-182235 Msa1364110:CDS
CATCAATACCACGGGCCAAA+AGG 0.460041 tig0018106:+181887 None:intergenic
TTTGGCCCCAACAAGGGAGC+TGG 0.463851 tig0018106:-182812 Msa1364110:CDS
AGTAGATCAGCAACATTTGA+AGG 0.466150 tig0018106:+181682 None:intergenic
AAGGTTCATGCTTGTGTTGG+TGG 0.466235 tig0018106:-182739 Msa1364110:CDS
TGCTGCGAAGACAGTCTCTT+CGG 0.488354 tig0018106:-182636 Msa1364110:CDS
GTGATTCAGCAGGCTCAGTC+AGG 0.498167 tig0018106:-182913 Msa1364110:CDS
CATCTTAGTGTCAAACTGCT+TGG 0.499196 tig0018106:+183752 None:intergenic
CTCCATCGTATTGGGCGAAG+TGG 0.499221 tig0018106:-181808 Msa1364110:CDS
ACTGGTGTCCATGTTGTTGT+TGG 0.499852 tig0018106:-182682 Msa1364110:CDS
GATCAGCGTATTCTCCAAAC+TGG 0.501639 tig0018106:-182700 Msa1364110:CDS
TTCACGTGGTTTCAAGGACC+AGG 0.504125 tig0018106:-182566 Msa1364110:intron
ACACAAGGCGCAAGGTGGAC+TGG 0.505122 tig0018106:-182038 Msa1364110:CDS
GTTAAGGTTCATGCTTGTGT+TGG 0.507288 tig0018106:-182742 Msa1364110:CDS
GTGAGCGAAGAAGAGAGAAT+AGG 0.518440 tig0018106:+184489 None:intergenic
GTGTGATCTTTATGAGACTC+TGG 0.521304 tig0018106:-182088 Msa1364110:CDS
ATCATGCGTGAATTCCGCTC+TGG 0.527239 tig0018106:-181937 Msa1364110:CDS
GAAGAATTCTTGTCCTTCAG+TGG 0.531706 tig0018106:+183637 None:intergenic
GAGAAGGTTATGAGAGCACT+TGG 0.533228 tig0018106:-182778 Msa1364110:CDS
GTATGTATTCTACTACTACT+AGG 0.534607 tig0018106:+184631 None:intergenic
AATTACAGGCTTTCCACTGA+AGG 0.540134 tig0018106:-183650 Msa1364110:intron
CTGTGCCAGCTCCCTTGTTG+GGG 0.543113 tig0018106:+182807 None:intergenic
TGCTATCAACTTCGTCACAT+TGG 0.543489 tig0018106:-181764 Msa1364110:CDS
AGCATGTCAAACACACGTCC+AGG 0.544974 tig0018106:+182655 None:intergenic
GGGTCTCGATGTGATTCAGC+AGG 0.549184 tig0018106:-182923 Msa1364110:CDS
CTCTGCTACAATGCCTCCAG+AGG 0.551425 tig0018106:-182241 Msa1364110:CDS
TTAGGGTTTCCCAAACTCCT+CGG 0.552128 tig0018106:+184531 None:intergenic
GACATGTATGATATAAATAA+GGG 0.554033 tig0018106:+181418 None:intergenic
TTGGGGCCAAAACCAAAGCC+TGG 0.554251 tig0018106:+182824 None:intergenic
TCTTCGCTCACTCCACAAGC+AGG 0.561786 tig0018106:-184477 Msa1364110:intron
CAGAGGCTCTGGAGATCACA+AGG 0.564855 tig0018106:-182224 Msa1364110:CDS
CTCAGCCACCCATGGAGACA+TGG 0.565513 tig0018106:-181980 Msa1364110:CDS
AACTCCACGGCGCAGATCCG+AGG 0.568103 tig0018106:-184548 Msa1364110:five_prime_UTR
TCCATCGTATTGGGCGAAGT+GGG 0.570459 tig0018106:-181807 Msa1364110:CDS
CTGCCACCCAAAATTCAGGT+TGG 0.574116 tig0018106:-182270 Msa1364110:CDS
TTGGTCCATGTCTCCATGGG+TGG 0.574389 tig0018106:+181975 None:intergenic
AGTCATGGCAGGTTTAGCTC+CGG 0.585504 tig0018106:-183793 Msa1364110:exon
AGCCATCTGCAATACAGCAA+AGG 0.592072 tig0018106:-182966 Msa1364110:CDS
CACTCTTCCCTTCAACTCCA+CGG 0.594775 tig0018106:-184561 Msa1364110:five_prime_UTR
AACTCCTCGGATCTGCGCCG+TGG 0.597296 tig0018106:+184544 None:intergenic
TTCTTTGTTAAGTCATCGGG+GGG 0.598798 tig0018106:-181641 Msa1364110:three_prime_UTR
ATTGGAAGATGCAAGAATGC+TGG 0.599752 tig0018106:-181746 Msa1364110:CDS
GCCCACTTCGCCCAATACGA+TGG 0.601432 tig0018106:+181806 None:intergenic
AGAACTGCTTGATACCCTCA+AGG 0.605423 tig0018106:+182151 None:intergenic
CAGGAGTACCAACAACAACA+TGG 0.608453 tig0018106:+182674 None:intergenic
GTGATCTCCAGAGCCTCTGG+AGG 0.613832 tig0018106:+182228 None:intergenic
ATCTGCGCCGTGGAGTTGAA+GGG 0.615084 tig0018106:+184554 None:intergenic
TGAATGTTGACAAGGAAGAG+TGG 0.615932 tig0018106:-182125 Msa1364110:CDS
GTTCTTTGTTAAGTCATCGG+GGG 0.616041 tig0018106:-181642 Msa1364110:three_prime_UTR
TTGCTGAACATCAATACCAC+GGG 0.620577 tig0018106:+181879 None:intergenic
GAGATACGTATACCTGCTTG+TGG 0.623092 tig0018106:+184465 None:intergenic
GCTGGCACAGCAGATTGAGA+AGG 0.628451 tig0018106:-182794 Msa1364110:CDS
CATACTGTCTCAGCCACCCA+TGG 0.631002 tig0018106:-181988 Msa1364110:CDS
ATGGCAGGTTTAGCTCCGGA+AGG 0.641220 tig0018106:-183789 Msa1364110:CDS
AGAGCACTTGGTGATTACCT+TGG 0.644049 tig0018106:-182766 Msa1364110:CDS
TGTTCTTTGTTAAGTCATCG+GGG 0.645741 tig0018106:-181643 Msa1364110:three_prime_UTR
GTTCTATAATGTGATCGTAG+AGG 0.657829 tig0018106:-181710 Msa1364110:CDS
CTTGCTGAACATCAATACCA+CGG 0.663030 tig0018106:+181878 None:intergenic
GCGTGATGAATTGACCCTTG+AGG 0.663843 tig0018106:-182166 Msa1364110:CDS
ACCACGGGCCAAAAGGTCAG+TGG 0.665992 tig0018106:+181894 None:intergenic
TTGATAGAAAATCTTCTGAG+AGG 0.671045 tig0018106:-183572 Msa1364110:CDS
GAACTGCTTGATACCCTCAA+GGG 0.677590 tig0018106:+182152 None:intergenic
TGGCTCACTGACAAGATGCG+AGG 0.683723 tig0018106:-182018 Msa1364110:CDS
TGGTGGCACTAGTGTTCGTG+AGG 0.685653 tig0018106:-182722 Msa1364110:CDS
GTTCTACGTGAATGTTGACA+AGG 0.687466 tig0018106:-182133 Msa1364110:CDS
GAACTCGAGAAGAGCCAGAG+CGG 0.689835 tig0018106:+181923 None:intergenic
TGTGAACACAAGGCGCAAGG+TGG 0.709342 tig0018106:-182043 Msa1364110:CDS
AAGCATGAACCTTAACACCA+AGG 0.715621 tig0018106:+182749 None:intergenic
GCTGATGAAATGCTTTCACG+TGG 0.720414 tig0018106:-182580 Msa1364110:CDS
CCATCTGCAATACAGCAAAG+GGG 0.725959 tig0018106:-182964 Msa1364110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAATTTTTTTTTTAAATCA+TGG - tig0018106:182039-182058 Msa1364110:CDS 10.0%
!! CAAAAGTTTAAAAATTAATT+GGG - tig0018106:182597-182616 Msa1364110:CDS 10.0%
!! AATCTAAAAGAATGAAAATT+GGG + tig0018106:181589-181608 None:intergenic 15.0%
!! AAATCTAAAAGAATGAAAAT+TGG + tig0018106:181590-181609 None:intergenic 15.0%
!!! TTTTTTTTTTGTAAATTTGG+AGG - tig0018106:181997-182016 Msa1364110:CDS 15.0%
!!! TAATGCATAATTTTAATTAC+AGG - tig0018106:182349-182368 Msa1364110:intron 15.0%
!! GCAAAAGTTTAAAAATTAAT+TGG - tig0018106:182596-182615 Msa1364110:CDS 15.0%
!! TGTTTAATCACTTAATTATT+AGG - tig0018106:184502-184521 Msa1364110:five_prime_UTR 15.0%
!! GTTTAATCACTTAATTATTA+GGG - tig0018106:184503-184522 Msa1364110:five_prime_UTR 15.0%
!! ATCTAAAAGAATGAAAATTG+GGG + tig0018106:181588-181607 None:intergenic 20.0%
!!! TATTAGTTTGTTTTGATTTG+TGG - tig0018106:181743-181762 Msa1364110:CDS 20.0%
!! TTATCATACATGCTTAATAA+GGG + tig0018106:182513-182532 None:intergenic 20.0%
!! AAGGATTAAAAAATTGTGAT+AGG + tig0018106:182573-182592 None:intergenic 20.0%
!!! TCACAATTTTTTAATCCTTT+TGG - tig0018106:182574-182593 Msa1364110:CDS 20.0%
!!! ATTTTTAAACTTTTGCCAAA+AGG + tig0018106:182592-182611 None:intergenic 20.0%
!!! TGAAAACTCTTTAAAAATCA+TGG - tig0018106:182639-182658 Msa1364110:CDS 20.0%
!! GCAATTAATTAATTAACTCA+AGG - tig0018106:182688-182707 Msa1364110:CDS 20.0%
!! ATTAACTCAAGGTTATATAA+TGG - tig0018106:182699-182718 Msa1364110:CDS 20.0%
!! TTAACTCAAGGTTATATAAT+GGG - tig0018106:182700-182719 Msa1364110:CDS 20.0%
!! GTATATATAAACAATTTCGA+GGG - tig0018106:182775-182794 Msa1364110:CDS 20.0%
!!! TTGCATTAAAATGTTTGTTT+TGG - tig0018106:183405-183424 Msa1364110:intron 20.0%
!! TAGCATAAGGTTTAAATTTA+AGG + tig0018106:184571-184590 None:intergenic 20.0%
!! GACATGTATGATATAAATAA+GGG + tig0018106:184598-184617 None:intergenic 20.0%
!! TGACATGTATGATATAAATA+AGG + tig0018106:184599-184618 None:intergenic 20.0%
! CGAAGAAAGATTGAAAATTA+GGG + tig0018106:181502-181521 None:intergenic 25.0%
! TCGAAGAAAGATTGAAAATT+AGG + tig0018106:181503-181522 None:intergenic 25.0%
! TGATTTCAAAAATCAGAACT+TGG + tig0018106:181692-181711 None:intergenic 25.0%
! ATGAGATGATTCAAATCTTA+AGG + tig0018106:181898-181917 None:intergenic 25.0%
! TTAAGATTTGAATCATCTCA+TGG - tig0018106:181897-181916 Msa1364110:CDS 25.0%
! CAAAAATAAACCAACAACAA+AGG + tig0018106:182135-182154 None:intergenic 25.0%
! AGATGAATGAATTGTAAGTA+AGG - tig0018106:182279-182298 Msa1364110:CDS 25.0%
! AATAAGGGCTTAAAGAAAAA+AGG + tig0018106:182498-182517 None:intergenic 25.0%
! GTTATCATACATGCTTAATA+AGG + tig0018106:182514-182533 None:intergenic 25.0%
! TTTAAAAATTAATTGGGTGC+TGG - tig0018106:182603-182622 Msa1364110:CDS 25.0%
!!! ATGGACATTTATTTTTAGAC+AGG - tig0018106:182658-182677 Msa1364110:CDS 25.0%
!!! TGGACATTTATTTTTAGACA+GGG - tig0018106:182659-182678 Msa1364110:CDS 25.0%
! TATATAGTGACAACTATCAA+GGG + tig0018106:182737-182756 None:intergenic 25.0%
! GGTATATATAAACAATTTCG+AGG - tig0018106:182774-182793 Msa1364110:CDS 25.0%
! AGGTTAAAACGTAATAAGAA+CGG + tig0018106:182903-182922 None:intergenic 25.0%
! TACAGTGTATAGATGTATTT+AGG + tig0018106:182923-182942 None:intergenic 25.0%
!! TTGTTTGTTAGAACTGAATT+TGG - tig0018106:183523-183542 Msa1364110:intron 25.0%
! TAAAACAAGATCAATTCATC+TGG + tig0018106:183660-183679 None:intergenic 25.0%
! TTTGTTCTTTGTTAAGTCAT+CGG - tig0018106:184368-184387 Msa1364110:intron 25.0%
! ACATCTGACTCTATTTATAA+TGG - tig0018106:184466-184485 Msa1364110:intron 25.0%
! CACAAGACAGAAATAAAAAA+AGG + tig0018106:184538-184557 None:intergenic 25.0%
GTATGTATTCTACTACTACT+AGG + tig0018106:181385-181404 None:intergenic 30.0%
!!! GTTTGTTTTGATTTGTGGTA+AGG - tig0018106:181748-181767 Msa1364110:CDS 30.0%
!!! AGGATTTGTTGTTTTCTGAT+TGG - tig0018106:181920-181939 Msa1364110:CDS 30.0%
CAAGAAAACACATAACACAA+GGG + tig0018106:182094-182113 None:intergenic 30.0%
AGAACAAAACAGTACACTTT+AGG + tig0018106:182198-182217 None:intergenic 30.0%
!! ACTGTTTTGTTCTATAGTCA+TGG - tig0018106:182205-182224 Msa1364110:CDS 30.0%
! TCATGAAACTTTTGATGCAA+TGG - tig0018106:182416-182435 Msa1364110:intron 30.0%
! CATGAAACTTTTGATGCAAT+GGG - tig0018106:182417-182436 Msa1364110:intron 30.0%
TTGATAGAAAATCTTCTGAG+AGG - tig0018106:182441-182460 Msa1364110:intron 30.0%
AATTGTGATAGGCACTAATT+GGG + tig0018106:182562-182581 None:intergenic 30.0%
AAATTGTGATAGGCACTAAT+TGG + tig0018106:182563-182582 None:intergenic 30.0%
!!! GGACATTTATTTTTAGACAG+GGG - tig0018106:182660-182679 Msa1364110:CDS 30.0%
!!! GACATTTATTTTTAGACAGG+GGG - tig0018106:182661-182680 Msa1364110:CDS 30.0%
ATATAGTGACAACTATCAAG+GGG + tig0018106:182736-182755 None:intergenic 30.0%
CTATATAGTGACAACTATCA+AGG + tig0018106:182738-182757 None:intergenic 30.0%
TATATACCAATGACAAGCAT+GGG + tig0018106:182762-182781 None:intergenic 30.0%
ATATATACCAATGACAAGCA+TGG + tig0018106:182763-182782 None:intergenic 30.0%
! CTTTTCTTTAATCGCATGTT+CGG - tig0018106:182807-182826 Msa1364110:CDS 30.0%
! GGAATTGTTCCTTTTATCAA+GGG - tig0018106:183070-183089 Msa1364110:intron 30.0%
TGTGTTAGATTTCTGATTGT+TGG - tig0018106:183470-183489 Msa1364110:intron 30.0%
AGGTAAAGGGTTATAGAATA+TGG + tig0018106:183618-183637 None:intergenic 30.0%
AAAACTATCTCCATCGTATT+GGG - tig0018106:184197-184216 Msa1364110:intron 30.0%
TTGTTCTTTGTTAAGTCATC+GGG - tig0018106:184369-184388 Msa1364110:intron 30.0%
AGATGTCTTTGAACTCTAAT+GGG + tig0018106:184452-184471 None:intergenic 30.0%
AGATTTGAATCATCTCATGG+AGG - tig0018106:181900-181919 Msa1364110:CDS 35.0%
GCAAGAAAACACATAACACA+AGG + tig0018106:182095-182114 None:intergenic 35.0%
! TGTTTTCTTGCAGTGATATC+TGG - tig0018106:182104-182123 Msa1364110:CDS 35.0%
! GTTTTCTTGCAGTGATATCT+GGG - tig0018106:182105-182124 Msa1364110:CDS 35.0%
! TTTTCTTGCAGTGATATCTG+GGG - tig0018106:182106-182125 Msa1364110:CDS 35.0%
! TTTTGTTCTATAGTCATGGC+AGG - tig0018106:182209-182228 Msa1364110:CDS 35.0%
GTATCAAATTGTGAACCTTC+CGG + tig0018106:182242-182261 None:intergenic 35.0%
TTCATGAACTTCATCGTATG+AGG + tig0018106:182403-182422 None:intergenic 35.0%
ATATACCAATGACAAGCATG+GGG + tig0018106:182761-182780 None:intergenic 35.0%
ATGTTCTGTTCTTGTGCTTA+AGG - tig0018106:183016-183035 Msa1364110:intron 35.0%
! GGGAATTGTTCCTTTTATCA+AGG - tig0018106:183069-183088 Msa1364110:intron 35.0%
! ATTTTGCAGCAGCTTGATTA+TGG - tig0018106:183154-183173 Msa1364110:intron 35.0%
AATCAGAAATCTAACACACC+TGG + tig0018106:183468-183487 None:intergenic 35.0%
CTGATTGTTGGAACTGAATT+TGG - tig0018106:183482-183501 Msa1364110:intron 35.0%
TTGTTGGAACTGAATTTGGT+TGG - tig0018106:183486-183505 Msa1364110:intron 35.0%
AACTGAATTTGGTTGGAGTT+GGG - tig0018106:183493-183512 Msa1364110:intron 35.0%
GTAGGTCAAATGAAGGTAAA+GGG + tig0018106:183631-183650 None:intergenic 35.0%
AGTAGGTCAAATGAAGGTAA+AGG + tig0018106:183632-183651 None:intergenic 35.0%
! AACACTCCAACCTGAATTTT+GGG + tig0018106:183752-183771 None:intergenic 35.0%
GAATAAGCCAGTTAGAATTC+TGG - tig0018106:183820-183839 Msa1364110:intron 35.0%
AAAAATGACACTCTGAGTGA+TGG + tig0018106:183951-183970 None:intergenic 35.0%
!!! GTGTCATTTTTGTGAACACA+AGG - tig0018106:183960-183979 Msa1364110:intron 35.0%
! TGATGATATCACGAGTGTTT+TGG + tig0018106:184060-184079 None:intergenic 35.0%
!!! ATGGAGATAGTTTTCAGGTT+GGG + tig0018106:184191-184210 None:intergenic 35.0%
! ATACGATGGAGATAGTTTTC+AGG + tig0018106:184196-184215 None:intergenic 35.0%
GAAAACTATCTCCATCGTAT+TGG - tig0018106:184196-184215 Msa1364110:intron 35.0%
GTTCTATAATGTGATCGTAG+AGG - tig0018106:184303-184322 Msa1364110:intron 35.0%
AGTAGATCAGCAACATTTGA+AGG + tig0018106:184334-184353 None:intergenic 35.0%
TGTTCTTTGTTAAGTCATCG+GGG - tig0018106:184370-184389 Msa1364110:intron 35.0%
CAGATGTCTTTGAACTCTAA+TGG + tig0018106:184453-184472 None:intergenic 35.0%
AAATAAGGGTTGCTAGCATA+AGG + tig0018106:184584-184603 None:intergenic 35.0%
GAAGAGTGAGAGAGAGATTT+AGG + tig0018106:181440-181459 None:intergenic 40.0%
CATCTTAGTGTCAAACTGCT+TGG + tig0018106:182264-182283 None:intergenic 40.0%
AATTACAGGCTTTCCACTGA+AGG - tig0018106:182363-182382 Msa1364110:intron 40.0%
GAAGAATTCTTGTCCTTCAG+TGG + tig0018106:182379-182398 None:intergenic 40.0%
! CTGAGAGGCATATATGCTTA+TGG - tig0018106:182456-182475 Msa1364110:intron 40.0%
!!! TTATTTTTAGACAGGGGGCT+TGG - tig0018106:182666-182685 Msa1364110:CDS 40.0%
CAAGAACAGAACATCACACA+TGG + tig0018106:183010-183029 None:intergenic 40.0%
ACATCGAGACCCTTGATAAA+AGG + tig0018106:183082-183101 None:intergenic 40.0%
!! TGGTGATTACCTTGGTGTTA+AGG - tig0018106:183255-183274 Msa1364110:intron 40.0%
AAGCATGAACCTTAACACCA+AGG + tig0018106:183267-183286 None:intergenic 40.0%
GTTAAGGTTCATGCTTGTGT+TGG - tig0018106:183271-183290 Msa1364110:intron 40.0%
AATGCTTTCACGTGGTTTCA+AGG - tig0018106:183441-183460 Msa1364110:intron 40.0%
GAACTGAATTTGGTTGGAGT+TGG - tig0018106:183492-183511 Msa1364110:intron 40.0%
GTGAGAAGTAGGTCAAATGA+AGG + tig0018106:183638-183657 None:intergenic 40.0%
CAATTCATCTGGTGAGAAGT+AGG + tig0018106:183649-183668 None:intergenic 40.0%
! GAACACTCCAACCTGAATTT+TGG + tig0018106:183753-183772 None:intergenic 40.0%
CGCTTTACCAGAATTCTAAC+TGG + tig0018106:183830-183849 None:intergenic 40.0%
GTTCTACGTGAATGTTGACA+AGG - tig0018106:183880-183899 Msa1364110:intron 40.0%
TGAATGTTGACAAGGAAGAG+TGG - tig0018106:183888-183907 Msa1364110:intron 40.0%
GTGTGATCTTTATGAGACTC+TGG - tig0018106:183925-183944 Msa1364110:intron 40.0%
! TCTCATTACCACTGACCTTT+TGG - tig0018106:184111-184130 Msa1364110:intron 40.0%
TTGCTGAACATCAATACCAC+GGG + tig0018106:184137-184156 None:intergenic 40.0%
CTTGCTGAACATCAATACCA+CGG + tig0018106:184138-184157 None:intergenic 40.0%
!!! AGATAGTTTTCAGGTTGGGT+AGG + tig0018106:184187-184206 None:intergenic 40.0%
!!! GATGGAGATAGTTTTCAGGT+TGG + tig0018106:184192-184211 None:intergenic 40.0%
TGCTATCAACTTCGTCACAT+TGG - tig0018106:184249-184268 Msa1364110:intron 40.0%
ATTGGAAGATGCAAGAATGC+TGG - tig0018106:184267-184286 Msa1364110:intron 40.0%
GTTCTTTGTTAAGTCATCGG+GGG - tig0018106:184371-184390 Msa1364110:intron 40.0%
TTCTTTGTTAAGTCATCGGG+GGG - tig0018106:184372-184391 Msa1364110:intron 40.0%
TTAGGGTTTCCCAAACTCCT+CGG + tig0018106:181485-181504 None:intergenic 45.0%
GTGAGCGAAGAAGAGAGAAT+AGG + tig0018106:181527-181546 None:intergenic 45.0%
GAGATACGTATACCTGCTTG+TGG + tig0018106:181551-181570 None:intergenic 45.0%
TATAGCCCCATGCTTGTCAT+TGG - tig0018106:182753-182772 Msa1364110:CDS 45.0%
TCACACATGGTATGCTAGTG+AGG + tig0018106:182997-183016 None:intergenic 45.0%
AGCCATCTGCAATACAGCAA+AGG - tig0018106:183047-183066 Msa1364110:intron 45.0%
GCCATCTGCAATACAGCAAA+GGG - tig0018106:183048-183067 Msa1364110:intron 45.0%
CCATCTGCAATACAGCAAAG+GGG - tig0018106:183049-183068 Msa1364110:intron 45.0%
GCAGCAGCTTGATTATGGTT+TGG - tig0018106:183159-183178 Msa1364110:intron 45.0%
!! TTATGGTTTGGTTCAGTGCC+AGG - tig0018106:183171-183190 Msa1364110:intron 45.0%
!!! TTTGGTTTTGGCCCCAACAA+GGG - tig0018106:183195-183214 Msa1364110:intron 45.0%
!! GAGAAGGTTATGAGAGCACT+TGG - tig0018106:183235-183254 Msa1364110:intron 45.0%
! AGAGCACTTGGTGATTACCT+TGG - tig0018106:183247-183266 Msa1364110:intron 45.0%
AAGGTTCATGCTTGTGTTGG+TGG - tig0018106:183274-183293 Msa1364110:intron 45.0%
GATCAGCGTATTCTCCAAAC+TGG - tig0018106:183313-183332 Msa1364110:intron 45.0%
CAACAACATGGACACCAGTT+TGG + tig0018106:183330-183349 None:intergenic 45.0%
ACTGGTGTCCATGTTGTTGT+TGG - tig0018106:183331-183350 Msa1364110:intron 45.0%
!! CAGGAGTACCAACAACAACA+TGG + tig0018106:183342-183361 None:intergenic 45.0%
! CATGTTGTTGTTGGTACTCC+TGG - tig0018106:183340-183359 Msa1364110:intron 45.0%
GCTGATGAAATGCTTTCACG+TGG - tig0018106:183433-183452 Msa1364110:intron 45.0%
! ACTCCAACCTGAATTTTGGG+TGG + tig0018106:183749-183768 None:intergenic 45.0%
CGTGATGAATTGACCCTTGA+GGG - tig0018106:183848-183867 Msa1364110:intron 45.0%
GAACTGCTTGATACCCTCAA+GGG + tig0018106:183864-183883 None:intergenic 45.0%
AGAACTGCTTGATACCCTCA+AGG + tig0018106:183865-183884 None:intergenic 45.0%
! TTTTGTGAACACAAGGCGCA+AGG - tig0018106:183967-183986 Msa1364110:intron 45.0%
!! GTTTTGGTCCATGTCTCCAT+GGG + tig0018106:184044-184063 None:intergenic 45.0%
!!! TGTTTTGGTCCATGTCTCCA+TGG + tig0018106:184045-184064 None:intergenic 45.0%
TGATGTTCAGCAAGTGTCTC+TGG - tig0018106:184144-184163 Msa1364110:intron 45.0%
!!! AGTGGGCGTTTTGGAAGAAA+AGG - tig0018106:184223-184242 Msa1364110:intron 45.0%
!!! TTTTTTTTTTTTTGTAAATT+TGG - tig0018106:181994-182013 Msa1364110:CDS 5.0%
CACTCTTCCCTTCAACTCCA+CGG - tig0018106:181452-181471 Msa1364110:three_prime_UTR 50.0%
! TCTGGGGATGCCTTTGTTGT+TGG - tig0018106:182122-182141 Msa1364110:CDS 50.0%
! AGTCATGGCAGGTTTAGCTC+CGG - tig0018106:182220-182239 Msa1364110:CDS 50.0%
! CCCCTTTGCTGTATTGCAGA+TGG + tig0018106:183052-183071 None:intergenic 50.0%
AAGACAGCGACGTTCTGTTC+TGG - tig0018106:183130-183149 Msa1364110:intron 50.0%
! TTTGGTTCAGTGCCAGGCTT+TGG - tig0018106:183177-183196 Msa1364110:intron 50.0%
!! TCAGTGCCAGGCTTTGGTTT+TGG - tig0018106:183183-183202 Msa1364110:intron 50.0%
!!! CTTTGGTTTTGGCCCCAACA+AGG - tig0018106:183194-183213 Msa1364110:intron 50.0%
AGCATGTCAAACACACGTCC+AGG + tig0018106:183361-183380 None:intergenic 50.0%
TGCTGCGAAGACAGTCTCTT+CGG - tig0018106:183377-183396 Msa1364110:intron 50.0%
TTCACGTGGTTTCAAGGACC+AGG - tig0018106:183447-183466 Msa1364110:intron 50.0%
!! GAATTTTGGGTGGCAGCAAC+TGG + tig0018106:183739-183758 None:intergenic 50.0%
GTTGCTGCCACCCAAAATTC+AGG - tig0018106:183739-183758 Msa1364110:intron 50.0%
CTGCCACCCAAAATTCAGGT+TGG - tig0018106:183743-183762 Msa1364110:intron 50.0%
GCGTGATGAATTGACCCTTG+AGG - tig0018106:183847-183866 Msa1364110:intron 50.0%
ATCATGCGTGAATTCCGCTC+TGG - tig0018106:184076-184095 Msa1364110:intron 50.0%
CATCAATACCACGGGCCAAA+AGG + tig0018106:184129-184148 None:intergenic 50.0%
TCCATCGTATTGGGCGAAGT+GGG - tig0018106:184206-184225 Msa1364110:intron 50.0%
ATCTGCGCCGTGGAGTTGAA+GGG + tig0018106:181462-181481 None:intergenic 55.0%
TCTTCGCTCACTCCACAAGC+AGG - tig0018106:181536-181555 Msa1364110:three_prime_UTR 55.0%
! ATGGCAGGTTTAGCTCCGGA+AGG - tig0018106:182224-182243 Msa1364110:CDS 55.0%
GGGTCTCGATGTGATTCAGC+AGG - tig0018106:183090-183109 Msa1364110:intron 55.0%
GTGATTCAGCAGGCTCAGTC+AGG - tig0018106:183100-183119 Msa1364110:intron 55.0%
TTGGGGCCAAAACCAAAGCC+TGG + tig0018106:183192-183211 None:intergenic 55.0%
GCTGGCACAGCAGATTGAGA+AGG - tig0018106:183219-183238 Msa1364110:intron 55.0%
TGGTGGCACTAGTGTTCGTG+AGG - tig0018106:183291-183310 Msa1364110:intron 55.0%
CTCTGCTACAATGCCTCCAG+AGG - tig0018106:183772-183791 Msa1364110:CDS 55.0%
TACAATGCCTCCAGAGGCTC+TGG - tig0018106:183778-183797 Msa1364110:CDS 55.0%
CTTGTGATCTCCAGAGCCTC+TGG + tig0018106:183791-183810 None:intergenic 55.0%
!! CAGAGGCTCTGGAGATCACA+AGG - tig0018106:183789-183808 Msa1364110:CDS 55.0%
TGTGAACACAAGGCGCAAGG+TGG - tig0018106:183970-183989 Msa1364110:intron 55.0%
TGGCTCACTGACAAGATGCG+AGG - tig0018106:183995-184014 Msa1364110:intron 55.0%
CATGGGTGGCTGAGACAGTA+TGG + tig0018106:184027-184046 None:intergenic 55.0%
CATACTGTCTCAGCCACCCA+TGG - tig0018106:184025-184044 Msa1364110:intron 55.0%
TTGGTCCATGTCTCCATGGG+TGG + tig0018106:184041-184060 None:intergenic 55.0%
GAACTCGAGAAGAGCCAGAG+CGG + tig0018106:184093-184112 None:intergenic 55.0%
CTCCATCGTATTGGGCGAAG+TGG - tig0018106:184205-184224 Msa1364110:intron 55.0%
! ATTGGGCGAAGTGGGCGTTT+TGG - tig0018106:184214-184233 Msa1364110:intron 55.0%
GATCTGCGCCGTGGAGTTGA+AGG + tig0018106:181463-181482 None:intergenic 60.0%
GGCGCAGATCCGAGGAGTTT+GGG - tig0018106:181473-181492 Msa1364110:three_prime_UTR 60.0%
CAGCAGGCTCAGTCAGGAAC+TGG - tig0018106:183106-183125 Msa1364110:intron 60.0%
TTTGGCCCCAACAAGGGAGC+TGG - tig0018106:183201-183220 Msa1364110:intron 60.0%
CTGTGCCAGCTCCCTTGTTG+GGG + tig0018106:183209-183228 None:intergenic 60.0%
GCTGTGCCAGCTCCCTTGTT+GGG + tig0018106:183210-183229 None:intergenic 60.0%
TGCTGTGCCAGCTCCCTTGT+TGG + tig0018106:183211-183230 None:intergenic 60.0%
GTGATCTCCAGAGCCTCTGG+AGG + tig0018106:183788-183807 None:intergenic 60.0%
ACACAAGGCGCAAGGTGGAC+TGG - tig0018106:183975-183994 Msa1364110:intron 60.0%
CTCAGCCACCCATGGAGACA+TGG - tig0018106:184033-184052 Msa1364110:intron 60.0%
! ACCACTGACCTTTTGGCCCG+TGG - tig0018106:184118-184137 Msa1364110:intron 60.0%
ACCACGGGCCAAAAGGTCAG+TGG + tig0018106:184122-184141 None:intergenic 60.0%
GCCCACTTCGCCCAATACGA+TGG + tig0018106:184210-184229 None:intergenic 60.0%
AACTCCACGGCGCAGATCCG+AGG - tig0018106:181465-181484 Msa1364110:three_prime_UTR 65.0%
AACTCCTCGGATCTGCGCCG+TGG + tig0018106:181472-181491 None:intergenic 65.0%
CGGCGCAGATCCGAGGAGTT+TGG - tig0018106:181472-181491 Msa1364110:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
tig0018106 gene 181376 184659 181376 ID=Msa1364110;Name=Msa1364110
tig0018106 mRNA 181376 184659 181376 ID=Msa1364110-mRNA-1;Parent=Msa1364110;Name=Msa1364110-mRNA-1;_AED=0.05;_eAED=0.05;_QI=184|1|1|1|0.75|0.6|5|302|413
tig0018106 exon 181376 182313 181376 ID=Msa1364110-mRNA-1:exon:13866;Parent=Msa1364110-mRNA-1
tig0018106 exon 182567 182997 182567 ID=Msa1364110-mRNA-1:exon:13865;Parent=Msa1364110-mRNA-1
tig0018106 exon 183558 183664 183558 ID=Msa1364110-mRNA-1:exon:13864;Parent=Msa1364110-mRNA-1
tig0018106 exon 183744 183813 183744 ID=Msa1364110-mRNA-1:exon:13863;Parent=Msa1364110-mRNA-1
tig0018106 exon 184478 184659 184478 ID=Msa1364110-mRNA-1:exon:13862;Parent=Msa1364110-mRNA-1
tig0018106 five_prime_UTR 184478 184659 184478 ID=Msa1364110-mRNA-1:five_prime_utr;Parent=Msa1364110-mRNA-1
tig0018106 five_prime_UTR 183812 183813 183812 ID=Msa1364110-mRNA-1:five_prime_utr;Parent=Msa1364110-mRNA-1
tig0018106 CDS 183744 183811 183744 ID=Msa1364110-mRNA-1:cds;Parent=Msa1364110-mRNA-1
tig0018106 CDS 183558 183664 183558 ID=Msa1364110-mRNA-1:cds;Parent=Msa1364110-mRNA-1
tig0018106 CDS 182567 182997 182567 ID=Msa1364110-mRNA-1:cds;Parent=Msa1364110-mRNA-1
tig0018106 CDS 181678 182313 181678 ID=Msa1364110-mRNA-1:cds;Parent=Msa1364110-mRNA-1
tig0018106 three_prime_UTR 181376 181677 181376 ID=Msa1364110-mRNA-1:three_prime_utr;Parent=Msa1364110-mRNA-1
Gene Sequence

>Msa1364110

ATGGCAGGTTTAGCTCCGGAAGGTTCACAATTTGATACCAAGCAGTTTGACACTAAGATGAATGAATTGCTTTCCACTGAAGGACAAGAATTCTTCACCTCATACGATGAAGTTCATGAAACTTTTGATGCAATGGGATTGATAGAAAATCTTCTGAGAGGCATATATGCTTATGGTTTTGAGAAGCCATCTGCAATACAGCAAAGGGGAATTGTTCCTTTTATCAAGGGTCTCGATGTGATTCAGCAGGCTCAGTCAGGAACTGGAAAGACAGCGACGTTCTGTTCTGGAATTTTGCAGCAGCTTGATTATGGTTTGGTTCAGTGCCAGGCTTTGGTTTTGGCCCCAACAAGGGAGCTGGCACAGCAGATTGAGAAGGTTATGAGAGCACTTGGTGATTACCTTGGTGTTAAGGTTCATGCTTGTGTTGGTGGCACTAGTGTTCGTGAGGATCAGCGTATTCTCCAAACTGGTGTCCATGTTGTTGTTGGTACTCCTGGACGTGTGTTTGACATGCTGCGAAGACAGTCTCTTCGGTCAGATTGCATTAAAATGTTTGTTTTGGATGAAGCTGATGAAATGCTTTCACGTGGTTTCAAGGACCAGATCTACGACATCTTCCAGTTGCTGCCACCCAAAATTCAGGTTGGAGTGTTCTCTGCTACAATGCCTCCAGAGGCTCTGGAGATCACAAGGAAGTTCATGAATAAGCCAGTTAGAATTCTGGTAAAGCGTGATGAATTGACCCTTGAGGGTATCAAGCAGTTCTACGTGAATGTTGACAAGGAAGAGTGGAAACTAGAGACATTGTGTGATCTTTATGAGACTCTGGCCATCACTCAGAGTGTCATTTTTGTGAACACAAGGCGCAAGGTGGACTGGCTCACTGACAAGATGCGAGGCAGAGACCATACTGTCTCAGCCACCCATGGAGACATGGACCAAAACACTCGTGATATCATCATGCGTGAATTCCGCTCTGGCTCTTCTCGAGTTCTCATTACCACTGACCTTTTGGCCCGTGGTATTGATGTTCAGCAAGTGTCTCTGGTCATAAATTATGATTTGCCTACCCAACCTGAAAACTATCTCCATCGTATTGGGCGAAGTGGGCGTTTTGGAAGAAAAGGTGTTGCTATCAACTTCGTCACATTGGAAGATGCAAGAATGCTGGCTGATATTCAGAAGTTCTATAATGTGATCGTAGAGGAACTGCCTTCAAATGTTGCTGATCTACTCTGA
Protein sequence

>Msa1364110

MAGLAPEGSQFDTKQFDTKMNELLSTEGQEFFTSYDEVHETFDAMGLIENLLRGIYAYGFEKPSAIQQRGIVPFIKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQTGVHVVVGTPGRVFDMLRRQSLRSDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLEDARMLADIQKFYNVIVEELPSNVADLL*