AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0695790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0695790 MtrunA17_Chr4g0047431 98.371 491 8 0 1 491 1 491 0.0 986
Msa0695790 MtrunA17_Chr2g0332591 44.697 132 71 1 259 390 29 158 1.97e-30 115
Msa0695790 MtrunA17_Chr2g0332591 46.535 101 54 0 154 254 53 153 6.46e-29 111
Msa0695790 MtrunA17_Chr2g0332591 47.826 92 47 1 400 491 63 153 4.04e-25 101
Msa0695790 MtrunA17_Chr4g0006981 48.246 114 52 2 147 253 199 312 5.28e-26 108
Msa0695790 MtrunA17_Chr4g0006981 33.684 190 106 9 312 485 122 307 3.07e-22 97.4
Msa0695790 MtrunA17_Chr4g0006981 40.385 104 59 1 277 377 204 307 1.71e-19 89.4
Msa0695790 MtrunA17_Chr2g0280411 33.708 89 59 0 14 102 24 112 1.23e-13 67.8
Msa0695790 MtrunA17_Chr8g0393201 33.333 111 70 1 3 109 227 337 1.79e-13 71.6
Msa0695790 MtrunA17_Chr7g0216481 34.568 81 53 0 24 104 51 131 1.45e-12 65.1
Msa0695790 MtrunA17_Chr2g0319291 34.831 89 58 0 23 111 34 122 1.80e-12 64.3
Msa0695790 MtrunA17_Chr1g0155721 31.132 106 69 1 3 104 6 111 3.51e-12 63.5
Msa0695790 MtrunA17_Chr3g0142051 33.735 83 55 0 24 106 31 113 4.86e-12 62.8
Msa0695790 MtrunA17_Chr4g0042051 28.689 122 76 1 1 111 1 122 2.66e-11 61.2
Msa0695790 MtrunA17_Chr8g0334481 27.778 108 74 2 2 105 25 132 5.35e-11 60.5
Msa0695790 MtrunA17_Chr7g0245141 29.897 97 68 0 13 109 38 134 7.01e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0695790 AT4G04950.1 72.819 493 127 4 1 491 1 488 0.0 727
Msa0695790 AT4G32580.1 64.242 165 48 3 1 164 1 155 1.87e-66 211
Msa0695790 AT3G54900.1 56.863 102 44 0 278 379 64 165 1.29e-31 120
Msa0695790 AT3G54900.1 51.000 100 49 0 151 250 66 165 2.44e-28 111
Msa0695790 AT3G54900.1 52.632 95 44 1 392 486 71 164 2.41e-26 105
Msa0695790 AT3G15660.2 45.370 108 59 0 147 254 56 163 1.43e-28 111
Msa0695790 AT3G15660.2 47.059 102 54 0 280 381 60 161 9.56e-28 109
Msa0695790 AT3G15660.2 42.157 102 58 1 390 491 63 163 1.56e-24 100
Msa0695790 AT3G15660.1 45.370 108 59 0 147 254 56 163 1.43e-28 111
Msa0695790 AT3G15660.1 47.059 102 54 0 280 381 60 161 9.56e-28 109
Msa0695790 AT3G15660.1 42.157 102 58 1 390 491 63 163 1.56e-24 100
Msa0695790 AT2G38270.1 46.018 113 54 2 147 252 180 292 2.08e-26 108
Msa0695790 AT2G38270.1 46.078 102 51 2 392 490 193 293 2.32e-24 103
Msa0695790 AT2G38270.1 41.284 109 61 1 277 382 185 293 3.03e-22 97.4
Msa0695790 AT1G11530.1 38.750 80 49 0 23 102 26 105 9.67e-14 68.2
Msa0695790 AT3G17880.2 36.471 85 54 0 24 108 288 372 1.17e-13 72.8
Msa0695790 AT3G17880.1 36.471 85 54 0 24 108 295 379 1.25e-13 72.8
Msa0695790 AT3G56420.1 35.714 98 63 0 9 106 50 147 3.80e-13 67.4
Msa0695790 AT3G56420.2 35.714 98 63 0 9 106 50 147 3.80e-13 67.4
Msa0695790 AT3G56420.3 35.714 98 63 0 9 106 50 147 3.80e-13 67.4
Msa0695790 AT2G40790.2 33.673 98 65 0 9 106 50 147 1.22e-12 66.2
Msa0695790 AT2G40790.1 33.673 98 65 0 9 106 50 147 1.22e-12 66.2
Msa0695790 AT1G19730.1 33.333 96 63 1 13 107 20 115 2.61e-11 61.2
Msa0695790 AT3G51030.1 30.435 92 64 0 13 104 20 111 3.34e-11 60.8
Msa0695790 AT1G45145.1 29.213 89 63 0 24 112 30 118 6.79e-11 60.1

Find 149 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCGGTGGTGCTTCACTTC+TGG 0.087525 4_4:-65479066 Msa0695790:CDS
CTGTTAATTCTTAGAATAAT+TGG 0.105084 4_4:-65476085 Msa0695790:three_prime_UTR
GCTGAGGGTATTGTTAATTT+TGG 0.185655 4_4:-65476036 Msa0695790:three_prime_UTR
TTGGTTATACAAAGAGAATT+AGG 0.202219 4_4:-65479198 Msa0695790:five_prime_UTR
CGAATATTAAAGCTTTATTT+TGG 0.207804 4_4:-65479217 Msa0695790:five_prime_UTR
CGATCTTCAATGGTCTCTTT+TGG 0.228425 4_4:+65476405 None:intergenic
TCCGGTGGTGCTTCACTTCT+GGG 0.239526 4_4:-65479065 Msa0695790:CDS
TTTCTGCTAAATCCACATTT+TGG 0.245986 4_4:+65477029 None:intergenic
TGAGGTGAGACAGGGGATTA+AGG 0.268053 4_4:-65476232 Msa0695790:CDS
GAGGAGGGTGTGGTGGATTT+TGG 0.308068 4_4:-65476279 Msa0695790:CDS
CCCTCATACCCATTTCTTAA+GGG 0.316341 4_4:-65478981 Msa0695790:intron
GATATATAGTTGAGGATAAC+TGG 0.318174 4_4:+65476518 None:intergenic
GAAACAAATATAACAGATTC+AGG 0.318310 4_4:-65476783 Msa0695790:CDS
AAACCGCATCTTGGAGCATC+TGG 0.332380 4_4:+65476330 None:intergenic
CTAGAAAGCTTGGTCAATTC+AGG 0.336062 4_4:-65476702 Msa0695790:CDS
AAGGAAGAGAAGGTTAAGTT+TGG 0.337919 4_4:-65476990 Msa0695790:CDS
ATTATGGAGCTGCGGAATAA+TGG 0.339167 4_4:-65476141 Msa0695790:CDS
AAGTGATGATGAGGTGAGAC+AGG 0.342056 4_4:-65476241 Msa0695790:CDS
GGATTAAGGTATTCTCAAAT+TGG 0.345844 4_4:-65476218 Msa0695790:CDS
TCCCTCATACCCATTTCTTA+AGG 0.350830 4_4:-65478982 Msa0695790:CDS
TGGTTATACAAAGAGAATTA+GGG 0.354100 4_4:-65479197 Msa0695790:five_prime_UTR
GAAGAGTTGGTCCATGTGTT+TGG 0.361641 4_4:+65479024 None:intergenic
GGACCAACTCTTCTCTCATT+TGG 0.367508 4_4:-65479014 Msa0695790:CDS
CTGAGGAAATGTGGGCCAAT+TGG 0.383188 4_4:+65476914 None:intergenic
AAAACCGAACCCTTAAGAAA+TGG 0.386272 4_4:+65478972 None:intergenic
ACCTTGTTGGCTAAACTTGA+TGG 0.387462 4_4:+65477284 None:intergenic
TGTTAATTCTTAGAATAATT+GGG 0.393222 4_4:-65476084 Msa0695790:three_prime_UTR
TTTCTTCAAACGATCTTCAA+TGG 0.395624 4_4:+65476395 None:intergenic
AGGCGGTTGCGATATCATTA+TGG 0.397058 4_4:-65476157 Msa0695790:CDS
CTCAGTTATGCTGTTTATGA+AGG 0.400437 4_4:-65476679 Msa0695790:CDS
GACTCAAGGTTTATTCAAAC+TGG 0.401770 4_4:-65476542 Msa0695790:CDS
TCTATATACTGTTTGATATG+AGG 0.403515 4_4:-65475967 Msa0695790:three_prime_UTR
GCCGCTTCTCCTGCTAGTCT+TGG 0.404417 4_4:-65477227 Msa0695790:CDS
AAACCACACTTAGGTTCATC+TGG 0.410689 4_4:+65476651 None:intergenic
TACTGCAAAGGAGAACTTGT+TGG 0.433798 4_4:-65476888 Msa0695790:CDS
CCCTTCATGAAGAGCATCAC+AGG 0.434696 4_4:+65476357 None:intergenic
AGAAAACTTTACATGGGAAA+GGG 0.443136 4_4:-65476434 Msa0695790:CDS
ATCATCATCGAGAGAGAGAA+TGG 0.446696 4_4:-65479149 Msa0695790:exon
CCCTGTGATGCTCTTCATGA+AGG 0.447763 4_4:-65476358 Msa0695790:CDS
CCGCTTCTCCTGCTAGTCTT+GGG 0.449817 4_4:-65477226 Msa0695790:CDS
AGCCTCTCGGCTAGAAAGCT+TGG 0.461986 4_4:-65476712 Msa0695790:CDS
ACCCTTAAGAAATGGGTATG+AGG 0.465816 4_4:+65478980 None:intergenic
GGTGGTTCGCGGCGGTTCTC+CGG 0.472677 4_4:-65479083 Msa0695790:CDS
GCAATATATAGAAGCAAAAG+AGG 0.473114 4_4:+65475913 None:intergenic
AAACCGAACCCTTAAGAAAT+GGG 0.473857 4_4:+65478973 None:intergenic
CGCCCTCCGAGAGGAGGGTG+TGG 0.478423 4_4:-65476289 Msa0695790:CDS
TTATCCTCAACTATATATCA+AGG 0.480228 4_4:-65476514 Msa0695790:CDS
TGAGTACAAATTTAGCCTCT+CGG 0.483522 4_4:-65476725 Msa0695790:CDS
CTGGAACTAAAACCGCATCT+TGG 0.495657 4_4:+65476321 None:intergenic
GAACTTAAGAAAACTTTACA+TGG 0.498564 4_4:-65476441 Msa0695790:CDS
AAGAAAACTTTACATGGGAA+AGG 0.498643 4_4:-65476435 Msa0695790:CDS
GCTAGTCTTGGGATGGCCGC+AGG 0.498693 4_4:-65477215 Msa0695790:CDS
AACCTAAGTGTGGTTTCAGC+AGG 0.498764 4_4:-65476644 Msa0695790:CDS
AACCGCATCTTGGAGCATCT+GGG 0.499723 4_4:+65476331 None:intergenic
TGCTTCACTTCTGGGCGTCA+TGG 0.501679 4_4:-65479057 Msa0695790:CDS
GAAGAGCATCACAGGGGAAG+AGG 0.504042 4_4:+65476365 None:intergenic
GAATAAGCCTCAGATATCTC+TGG 0.508311 4_4:+65478851 None:intergenic
CGTGAAGTCAAAGTCGGAGT+TGG 0.509652 4_4:-65479110 Msa0695790:CDS
GCATGAGAGTGGGGAGTTGA+AGG 0.514569 4_4:-65476841 Msa0695790:CDS
GCGGCCATCCCAAGACTAGC+AGG 0.516474 4_4:+65477218 None:intergenic
GAGAGAGAGAATGGGTGGTT+CGG 0.518765 4_4:-65479140 Msa0695790:exon
TTCAGATGACTACTAAGCCC+TGG 0.520813 4_4:+65477119 None:intergenic
TGTTATATTTGTTTCATCAA+CGG 0.521323 4_4:+65476791 None:intergenic
CCTTTCATGAAAAGCAAGAC+AGG 0.524095 4_4:+65477065 None:intergenic
GCCCAGAAGTGAAGCACCAC+CGG 0.524542 4_4:+65479064 None:intergenic
TCCATCAAGTTTAGCCAACA+AGG 0.525625 4_4:-65477285 Msa0695790:CDS
TTCTCCTGCTAGTCTTGGGA+TGG 0.527299 4_4:-65477222 Msa0695790:CDS
AGATTTAGAGATGCCACCCT+TGG 0.527838 4_4:+65476755 None:intergenic
GTAGCAGGCTCAATTAACTC+TGG 0.529527 4_4:-65477254 Msa0695790:CDS
AACAAGGTTTCAAAAGTAGC+AGG 0.531530 4_4:-65477269 Msa0695790:CDS
CCCTTAAGAAATGGGTATGA+GGG 0.534349 4_4:+65478981 None:intergenic
GCAGTAAAGCTGAGGAAATG+TGG 0.537101 4_4:+65476905 None:intergenic
TCGGAGGGCGTTTACAACTC+TGG 0.538373 4_4:+65476302 None:intergenic
TTTCCTCAGCTTTACTGCAA+AGG 0.540810 4_4:-65476900 Msa0695790:CDS
AGAATGTCAAAACTCTCAAA+CGG 0.542425 4_4:+65476588 None:intergenic
CTCGGATTCAGAGGTTCGTG+AGG 0.545103 4_4:-65476952 Msa0695790:CDS
TACTACAAAGGTGAGCTGAT+AGG 0.547099 4_4:-65476177 Msa0695790:CDS
TGGCCAAATGAGAGAAGAGT+TGG 0.547198 4_4:+65479011 None:intergenic
GTCAAAGTCGGAGTTGGATG+AGG 0.547629 4_4:-65479104 Msa0695790:CDS
CCTGTGATGCTCTTCATGAA+GGG 0.548900 4_4:-65476357 Msa0695790:CDS
GAAAACTTTACATGGGAAAG+GGG 0.549227 4_4:-65476433 Msa0695790:CDS
GGGTGGCATCTCTAAATCTA+CGG 0.552243 4_4:-65476751 Msa0695790:CDS
CAATTGCTATGCATGAGAGT+GGG 0.557425 4_4:-65476851 Msa0695790:CDS
TGCAAAGGAGAACTTGTTGG+CGG 0.559580 4_4:-65476885 Msa0695790:CDS
TGGCAAGACTGTTGACACAT+TGG 0.563114 4_4:-65477318 Msa0695790:CDS
GAAGTCAACTTTATCTGAGT+AGG 0.564861 4_4:-65476112 Msa0695790:exon
GAGTTGGATGAGGTGGTTCG+CGG 0.566123 4_4:-65479094 Msa0695790:CDS
AATCCACCACACCCTCCTCT+CGG 0.566774 4_4:+65476283 None:intergenic
TATCCTCAACTATATATCAA+GGG 0.567280 4_4:-65476513 Msa0695790:CDS
TGATATCCTCTCGGATTCAG+AGG 0.567907 4_4:-65476961 Msa0695790:CDS
TGGTGGATCTGACATTGTGT+TGG 0.570276 4_4:-65476481 Msa0695790:CDS
TCAGTTATGCTGTTTATGAA+GGG 0.574849 4_4:-65476678 Msa0695790:CDS
TTTCCTCAGCTTTACTACAA+AGG 0.576171 4_4:-65476189 Msa0695790:CDS
CACCACACCCTCCTCTCGGA+GGG 0.577974 4_4:+65476287 None:intergenic
CAAGACTGTTGACACATTGG+AGG 0.580038 4_4:-65477315 Msa0695790:CDS
CCTCCGAGAGGAGGGTGTGG+TGG 0.580925 4_4:-65476286 Msa0695790:CDS
AGTGATGATGAGGTGAGACA+GGG 0.582895 4_4:-65476240 Msa0695790:CDS
AGAAGTTCGTCAAGGACTCA+AGG 0.584620 4_4:-65476556 Msa0695790:CDS
CCCAAGACTAGCAGGAGAAG+CGG 0.585473 4_4:+65477226 None:intergenic
TGTAAACGCCCTCCGAGAGG+AGG 0.586099 4_4:-65476295 Msa0695790:CDS
GCAATTGCTATGCATGAGAG+TGG 0.592542 4_4:-65476852 Msa0695790:CDS
TAGTAAAGCTGAGGAAAGGT+AGG 0.596200 4_4:+65476195 None:intergenic
GTAAACGCCCTCCGAGAGGA+GGG 0.598281 4_4:-65476294 Msa0695790:CDS
AAGACTGTTGACACATTGGA+GGG 0.599834 4_4:-65477314 Msa0695790:CDS
CAGTAAAGCTGAGGAAATGT+GGG 0.600655 4_4:+65476906 None:intergenic
TTCCTGCTGAAACCACACTT+AGG 0.600780 4_4:+65476642 None:intergenic
GCAAAGGAGAACTTGTTGGC+GGG 0.600992 4_4:-65476884 Msa0695790:CDS
ATCCTCAACTATATATCAAG+GGG 0.601469 4_4:-65476512 Msa0695790:CDS
GGTTCGCGGCGGTTCTCCGG+TGG 0.602795 4_4:-65479080 Msa0695790:CDS
TCATCATCGAGAGAGAGAAT+GGG 0.604322 4_4:-65479148 Msa0695790:exon
AACAGATTCAGGAAACGCCA+AGG 0.605465 4_4:-65476772 Msa0695790:CDS
TCGGATTCAGAGGTTCGTGA+GGG 0.608082 4_4:-65476951 Msa0695790:CDS
AAAGTCGGAGTTGGATGAGG+TGG 0.608979 4_4:-65479101 Msa0695790:CDS
TATAAGCCACACTATAGCTG+AGG 0.608986 4_4:-65476052 Msa0695790:three_prime_UTR
GTGATGATGAGGTGAGACAG+GGG 0.611525 4_4:-65476239 Msa0695790:CDS
ACCCCAGATGCTCCAAGATG+CGG 0.614566 4_4:-65476333 Msa0695790:CDS
AGTCCTGAAGAGCCAAAATG+TGG 0.615193 4_4:-65477041 Msa0695790:CDS
ACCGCATCTTGGAGCATCTG+GGG 0.616858 4_4:+65476332 None:intergenic
GTGTGAAGCTTCCAAACACA+TGG 0.616893 4_4:-65479035 Msa0695790:CDS
AACTTAAGAAAACTTTACAT+GGG 0.623837 4_4:-65476440 Msa0695790:CDS
TTTGTAGTAAAGCTGAGGAA+AGG 0.624743 4_4:+65476191 None:intergenic
TTCAAGAACAGCGGATCCTG+CGG 0.628030 4_4:+65477199 None:intergenic
TTTCACTGTTTCAAGAACAG+CGG 0.628397 4_4:+65477190 None:intergenic
TCTCCTTTGCAGTAAAGCTG+AGG 0.629246 4_4:+65476897 None:intergenic
ACAGATTCAGGAAACGCCAA+GGG 0.630607 4_4:-65476771 Msa0695790:CDS
GCGAGACGTGAAGTCAAAGT+CGG 0.630737 4_4:-65479116 Msa0695790:CDS
AATTGCTATGCATGAGAGTG+GGG 0.633961 4_4:-65476850 Msa0695790:CDS
TAAGTGTGGTTTCAGCAGGA+AGG 0.635846 4_4:-65476640 Msa0695790:CDS
ATAAGCCACACTATAGCTGA+GGG 0.637121 4_4:-65476051 Msa0695790:three_prime_UTR
CCACCACACCCTCCTCTCGG+AGG 0.638455 4_4:+65476286 None:intergenic
CCTTCATGAAGAGCATCACA+GGG 0.642910 4_4:+65476358 None:intergenic
TGATATATTAAGTGATGATG+AGG 0.646285 4_4:-65476250 Msa0695790:CDS
GATTCAGGAAACGCCAAGGG+TGG 0.648240 4_4:-65476768 Msa0695790:CDS
GCGATATCATTATGGAGCTG+CGG 0.648366 4_4:-65476149 Msa0695790:CDS
TCACCTTTGTAGTAAAGCTG+AGG 0.655861 4_4:+65476186 None:intergenic
CAATACCCTCAGCTATAGTG+TGG 0.655881 4_4:+65476046 None:intergenic
ACTGATGAAGAAGTTCGTCA+AGG 0.659603 4_4:-65476564 Msa0695790:CDS
TACAAAGGTGAGCTGATAGG+CGG 0.666544 4_4:-65476174 Msa0695790:CDS
GACCAAGCTTTCTAGCCGAG+AGG 0.667802 4_4:+65476710 None:intergenic
TTGGATGAGGTGGTTCGCGG+CGG 0.670791 4_4:-65479091 Msa0695790:CDS
TCATCGAGAGAGAGAATGGG+TGG 0.673635 4_4:-65479145 Msa0695790:exon
AAACCAGATGAACCTAAGTG+TGG 0.682029 4_4:-65476654 Msa0695790:CDS
AGAACAACCAGAGATATCTG+AGG 0.688899 4_4:-65478858 Msa0695790:CDS
AGTTGTAAACGCCCTCCGAG+AGG 0.702292 4_4:-65476298 Msa0695790:CDS
TGACATTGTAATGTTCTGCG+TGG 0.704967 4_4:-65475994 Msa0695790:three_prime_UTR
CACGAACCTCTGAATCCGAG+AGG 0.707101 4_4:+65476955 None:intergenic
ATGGGTATGAGGGAAATCAG+TGG 0.723809 4_4:+65478991 None:intergenic
TCCTCAACTATATATCAAGG+GGG 0.735477 4_4:-65476511 Msa0695790:CDS
CTTCATGAAGAGCATCACAG+GGG 0.778155 4_4:+65476359 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCAATAAAGAAAATAAAAA+AGG - chr4_4:65476704-65476723 Msa0695790:CDS 10.0%
!! TCAATAAAGAAAATAAAAAA+GGG - chr4_4:65476705-65476724 Msa0695790:CDS 10.0%
!! AAGAAGATGAAAAATAAAAA+GGG + chr4_4:65476199-65476218 None:intergenic 15.0%
!!! TCAATTTTTTACTTTTTGTT+AGG - chr4_4:65476241-65476260 Msa0695790:CDS 15.0%
!!! TTAAGTTGTTTATTCAAATA+GGG + chr4_4:65476500-65476519 None:intergenic 15.0%
!!! ATTAAGTTGTTTATTCAAAT+AGG + chr4_4:65476501-65476520 None:intergenic 15.0%
!! AAAATGTAAGTATTATTTGT+AGG + chr4_4:65477317-65477336 None:intergenic 15.0%
!!! ACATTTTTAACTTATATAAG+AGG - chr4_4:65477330-65477349 Msa0695790:intron 15.0%
!!! TAAAAAAAGATAACTCTTTT+GGG + chr4_4:65477684-65477703 None:intergenic 15.0%
!!! ATAAAAAAAGATAACTCTTT+TGG + chr4_4:65477685-65477704 None:intergenic 15.0%
!! TGTTAATTCTTAGAATAATT+GGG - chr4_4:65479048-65479067 Msa0695790:CDS 15.0%
!!! CGAATATTAAAGCTTTATTT+TGG - chr4_4:65475915-65475934 Msa0695790:three_prime_UTR 20.0%
!! AAAAATAAAAAGGGGTAATT+GGG + chr4_4:65476190-65476209 None:intergenic 20.0%
!! AGAAGATGAAAAATAAAAAG+GGG + chr4_4:65476198-65476217 None:intergenic 20.0%
!! CAAGAAGATGAAAAATAAAA+AGG + chr4_4:65476200-65476219 None:intergenic 20.0%
!! TTTATTGAAAACTCAATATC+TGG + chr4_4:65476693-65476712 None:intergenic 20.0%
!!! CTAAGATAAAGTTTCTTTTT+TGG + chr4_4:65476761-65476780 None:intergenic 20.0%
!! TCCAAGTAAATATCAAATTT+GGG - chr4_4:65476978-65476997 Msa0695790:CDS 20.0%
!! AATATTGAAATATACGTCAA+AGG + chr4_4:65477009-65477028 None:intergenic 20.0%
!!! TTTTAATTAAGACTTGGTTT+TGG - chr4_4:65477569-65477588 Msa0695790:intron 20.0%
!! ATGATTCATACTTTCAATAT+GGG - chr4_4:65477725-65477744 Msa0695790:intron 20.0%
!!! AAAAGTTGTTGATATTTTGA+AGG - chr4_4:65478123-65478142 Msa0695790:intron 20.0%
!! TGTTATATTTGTTTCATCAA+CGG + chr4_4:65478344-65478363 None:intergenic 20.0%
!! AACTTAAGAAAACTTTACAT+GGG - chr4_4:65478692-65478711 Msa0695790:intron 20.0%
!! CTGTTAATTCTTAGAATAAT+TGG - chr4_4:65479047-65479066 Msa0695790:CDS 20.0%
! TTGGTTATACAAAGAGAATT+AGG - chr4_4:65475934-65475953 Msa0695790:three_prime_UTR 25.0%
! TGGTTATACAAAGAGAATTA+GGG - chr4_4:65475935-65475954 Msa0695790:three_prime_UTR 25.0%
! GAAAAATAAAAAGGGGTAAT+TGG + chr4_4:65476191-65476210 None:intergenic 25.0%
!!! GTTTTGATTTTTATCATGAC+AGG + chr4_4:65476390-65476409 None:intergenic 25.0%
! AGTAAGCTAAAAATAGCTTA+TGG - chr4_4:65476651-65476670 Msa0695790:CDS 25.0%
! GGAAATAAGTGATAAATTCA+AGG + chr4_4:65476831-65476850 None:intergenic 25.0%
!! ACTTGTTAAGAAGCTAAAAA+TGG + chr4_4:65476852-65476871 None:intergenic 25.0%
!! TTACTTGGACTTGTTTAAAT+TGG + chr4_4:65476967-65476986 None:intergenic 25.0%
! GTCCAAGTAAATATCAAATT+TGG - chr4_4:65476977-65476996 Msa0695790:CDS 25.0%
! CCAAGTAAATATCAAATTTG+GGG - chr4_4:65476979-65476998 Msa0695790:CDS 25.0%
! CGTATATTTCAATATTTCAG+TGG - chr4_4:65477013-65477032 Msa0695790:CDS 25.0%
! ACTATATTCCATTGTTCAAT+TGG + chr4_4:65477201-65477220 None:intergenic 25.0%
! TTGGTTAAATTACATGTGAT+TGG - chr4_4:65477258-65477277 Msa0695790:CDS 25.0%
! TGGTTAAATTACATGTGATT+GGG - chr4_4:65477259-65477278 Msa0695790:CDS 25.0%
!!! GCAGATTTTTAATTAAGACT+TGG - chr4_4:65477563-65477582 Msa0695790:intron 25.0%
!!! GCAGATTTTTAATTAAGACT+TGG - chr4_4:65477563-65477582 Msa0695790:intron 25.0%
! GATGATTCATACTTTCAATA+TGG - chr4_4:65477724-65477743 Msa0695790:intron 25.0%
! ATTAGTAGTTATTATCTGTC+AGG - chr4_4:65477790-65477809 Msa0695790:intron 25.0%
! AAAAAAGTAAAGTTCAACCA+GGG - chr4_4:65477996-65478015 Msa0695790:intron 25.0%
! GAAACAAATATAACAGATTC+AGG - chr4_4:65478349-65478368 Msa0695790:intron 25.0%
! TTATCCTCAACTATATATCA+AGG - chr4_4:65478618-65478637 Msa0695790:intron 25.0%
! TATCCTCAACTATATATCAA+GGG - chr4_4:65478619-65478638 Msa0695790:intron 25.0%
! GAACTTAAGAAAACTTTACA+TGG - chr4_4:65478691-65478710 Msa0695790:intron 25.0%
!! TGATATATTAAGTGATGATG+AGG - chr4_4:65478882-65478901 Msa0695790:intron 25.0%
! TCTATATACTGTTTGATATG+AGG - chr4_4:65479165-65479184 Msa0695790:five_prime_UTR 25.0%
!!! TCCTTTTTTTGTCTTCTTCA+AGG - chr4_4:65476316-65476335 Msa0695790:CDS 30.0%
ACCTTGAAGAAGACAAAAAA+AGG + chr4_4:65476320-65476339 None:intergenic 30.0%
GAATTCTATAGTATTGTTGC+TGG - chr4_4:65476364-65476383 Msa0695790:CDS 30.0%
TCAAAACTTTGTTCACTGTT+AGG - chr4_4:65476403-65476422 Msa0695790:CDS 30.0%
TTTGTTCACTGTTAGGTAAT+TGG - chr4_4:65476410-65476429 Msa0695790:CDS 30.0%
!!! ACTGTTAGGTAATTGGTTTT+TGG - chr4_4:65476417-65476436 Msa0695790:CDS 30.0%
!!! CTGTTAGGTAATTGGTTTTT+GGG - chr4_4:65476418-65476437 Msa0695790:CDS 30.0%
!!! TATATACTGTTGCTGTTTTG+TGG - chr4_4:65476460-65476479 Msa0695790:CDS 30.0%
! TAAAGCTAATTTTTCCACAG+AGG - chr4_4:65476556-65476575 Msa0695790:CDS 30.0%
AAAAAAGGGAAATGCTAACA+AGG - chr4_4:65476719-65476738 Msa0695790:CDS 30.0%
AAAAAGGGAAATGCTAACAA+GGG - chr4_4:65476720-65476739 Msa0695790:CDS 30.0%
!! AGTCAATTTCTAGAGTTTAG+AGG + chr4_4:65476801-65476820 None:intergenic 30.0%
CCCCAAATTTGATATTTACT+TGG + chr4_4:65476982-65477001 None:intergenic 30.0%
TTTCAATATTTCAGTGGTTG+TGG - chr4_4:65477019-65477038 Msa0695790:CDS 30.0%
ATGAAATGAACATGAGAAGA+AGG + chr4_4:65477091-65477110 None:intergenic 30.0%
TGATCAATCCAATTGAACAA+TGG - chr4_4:65477190-65477209 Msa0695790:CDS 30.0%
GGTTAAATTACATGTGATTG+GGG - chr4_4:65477260-65477279 Msa0695790:CDS 30.0%
GTTAAATTACATGTGATTGG+GGG - chr4_4:65477261-65477280 Msa0695790:CDS 30.0%
TTAAATTACATGTGATTGGG+GGG - chr4_4:65477262-65477281 Msa0695790:CDS 30.0%
GTAAGTATTATTTGTAGGTG+AGG + chr4_4:65477312-65477331 None:intergenic 30.0%
ATTAGTCAACAAGTATTCAC+TGG - chr4_4:65477401-65477420 Msa0695790:intron 30.0%
TTAGTCAACAAGTATTCACT+GGG - chr4_4:65477402-65477421 Msa0695790:intron 30.0%
GAAAAAAGTAAAGTTCAACC+AGG - chr4_4:65477995-65478014 Msa0695790:intron 30.0%
! TTTCTGCTAAATCCACATTT+TGG + chr4_4:65478106-65478125 None:intergenic 30.0%
!! TGATATTTTGAAGGAAGAGA+AGG - chr4_4:65478132-65478151 Msa0695790:intron 30.0%
! AAGGATGTTTTCAAAGATCA+CGG - chr4_4:65478310-65478329 Msa0695790:intron 30.0%
! TCAGTTATGCTGTTTATGAA+GGG - chr4_4:65478454-65478473 Msa0695790:intron 30.0%
AGAATGTCAAAACTCTCAAA+CGG + chr4_4:65478547-65478566 None:intergenic 30.0%
GATATATAGTTGAGGATAAC+TGG + chr4_4:65478617-65478636 None:intergenic 30.0%
ATCCTCAACTATATATCAAG+GGG - chr4_4:65478620-65478639 Msa0695790:intron 30.0%
AAGAAAACTTTACATGGGAA+AGG - chr4_4:65478697-65478716 Msa0695790:intron 30.0%
AGAAAACTTTACATGGGAAA+GGG - chr4_4:65478698-65478717 Msa0695790:intron 30.0%
TTTCTTCAAACGATCTTCAA+TGG + chr4_4:65478740-65478759 None:intergenic 30.0%
! GGATTAAGGTATTCTCAAAT+TGG - chr4_4:65478914-65478933 Msa0695790:intron 30.0%
GCAATATATAGAAGCAAAAG+AGG + chr4_4:65479222-65479241 None:intergenic 30.0%
! CTTTTGCTTCTATATATTGC+TGG - chr4_4:65479222-65479241 Msa0695790:five_prime_UTR 30.0%
ATACCCATTTCTTAAGGGTT+CGG - chr4_4:65476156-65476175 Msa0695790:CDS 35.0%
AAACCGAACCCTTAAGAAAT+GGG + chr4_4:65476162-65476181 None:intergenic 35.0%
AAAACCGAACCCTTAAGAAA+TGG + chr4_4:65476163-65476182 None:intergenic 35.0%
!! GTTTTGTGGTAGAATGGATT+AGG - chr4_4:65476474-65476493 Msa0695790:CDS 35.0%
ATGACATGTCCATAAGCTAA+GGG + chr4_4:65476876-65476895 None:intergenic 35.0%
TATGACATGTCCATAAGCTA+AGG + chr4_4:65476877-65476896 None:intergenic 35.0%
!!! GGTTGGTGTTTTGTTTTTGT+TGG - chr4_4:65477239-65477258 Msa0695790:CDS 35.0%
AGTATTATTTGTAGGTGAGG+AGG + chr4_4:65477309-65477328 None:intergenic 35.0%
!! AGATAACTCTTTTGGGTACA+TGG + chr4_4:65477677-65477696 None:intergenic 35.0%
GTAGTTATTATCTGTCAGGA+TGG - chr4_4:65477794-65477813 Msa0695790:intron 35.0%
!!! TGCTACTTTTGAAACCTTGT+TGG + chr4_4:65477864-65477883 None:intergenic 35.0%
AACAAGGTTTCAAAAGTAGC+AGG - chr4_4:65477863-65477882 Msa0695790:intron 35.0%
TTTCACTGTTTCAAGAACAG+CGG + chr4_4:65477945-65477964 None:intergenic 35.0%
!! CTGTCTTGCTTTTCATGAAA+GGG - chr4_4:65478068-65478087 Msa0695790:intron 35.0%
AAGGAAGAGAAGGTTAAGTT+TGG - chr4_4:65478142-65478161 Msa0695790:intron 35.0%
!! TGGAAGTTTTGATATCCTCT+CGG - chr4_4:65478162-65478181 Msa0695790:intron 35.0%
! GCTTGAAGAAGTTTTCCAAT+TGG - chr4_4:65478203-65478222 Msa0695790:intron 35.0%
TGAGTACAAATTTAGCCTCT+CGG - chr4_4:65478407-65478426 Msa0695790:intron 35.0%
! CTCAGTTATGCTGTTTATGA+AGG - chr4_4:65478453-65478472 Msa0695790:intron 35.0%
! CAAACGGAACATTTTCTTGT+CGG + chr4_4:65478531-65478550 None:intergenic 35.0%
GACTCAAGGTTTATTCAAAC+TGG - chr4_4:65478590-65478609 Msa0695790:intron 35.0%
TCCTCAACTATATATCAAGG+GGG - chr4_4:65478621-65478640 Msa0695790:intron 35.0%
GAAAACTTTACATGGGAAAG+GGG - chr4_4:65478699-65478718 Msa0695790:intron 35.0%
TTTGTAGTAAAGCTGAGGAA+AGG + chr4_4:65478944-65478963 None:intergenic 35.0%
TTTCCTCAGCTTTACTACAA+AGG - chr4_4:65478943-65478962 Msa0695790:intron 35.0%
GAAGTCAACTTTATCTGAGT+AGG - chr4_4:65479020-65479039 Msa0695790:CDS 35.0%
!!! GCTGAGGGTATTGTTAATTT+TGG - chr4_4:65479096-65479115 Msa0695790:CDS 35.0%
!!! TTGTTAATTTTGGTGCCATG+AGG - chr4_4:65479106-65479125 Msa0695790:CDS 35.0%
ATGTCAAAAACAAAGCCTCA+TGG + chr4_4:65479124-65479143 None:intergenic 35.0%
ATCATCATCGAGAGAGAGAA+TGG - chr4_4:65475983-65476002 Msa0695790:three_prime_UTR 40.0%
TCATCATCGAGAGAGAGAAT+GGG - chr4_4:65475984-65476003 Msa0695790:three_prime_UTR 40.0%
TCCCTCATACCCATTTCTTA+AGG - chr4_4:65476150-65476169 Msa0695790:CDS 40.0%
CCCTTAAGAAATGGGTATGA+GGG + chr4_4:65476154-65476173 None:intergenic 40.0%
CCCTCATACCCATTTCTTAA+GGG - chr4_4:65476151-65476170 Msa0695790:CDS 40.0%
ACCCTTAAGAAATGGGTATG+AGG + chr4_4:65476155-65476174 None:intergenic 40.0%
AGAACAACCAGAGATATCTG+AGG - chr4_4:65476274-65476293 Msa0695790:CDS 40.0%
GAATAAGCCTCAGATATCTC+TGG + chr4_4:65476284-65476303 None:intergenic 40.0%
!!! GTTGCTGTTTTGTGGTAGAA+TGG - chr4_4:65476468-65476487 Msa0695790:CDS 40.0%
TGACATTGTTTACTCCTCTG+TGG + chr4_4:65476573-65476592 None:intergenic 40.0%
AAAACTCAATATCTGGCCCA+TGG + chr4_4:65476686-65476705 None:intergenic 40.0%
TAACAAGTGCCCTTAGCTTA+TGG - chr4_4:65476864-65476883 Msa0695790:CDS 40.0%
AAGCACATGTGAGACTATCT+GGG + chr4_4:65476919-65476938 None:intergenic 40.0%
TAAGCACATGTGAGACTATC+TGG + chr4_4:65476920-65476939 None:intergenic 40.0%
ATGAACCTAATAAGCAGAGC+TGG + chr4_4:65477123-65477142 None:intergenic 40.0%
!! CATAGTCATCGACTCATTGA+TGG + chr4_4:65477158-65477177 None:intergenic 40.0%
CATCAATGAGTCGATGACTA+TGG - chr4_4:65477156-65477175 Msa0695790:CDS 40.0%
!!! AGTTTTGTTTGTGCTGTGTC+TGG - chr4_4:65477218-65477237 Msa0695790:CDS 40.0%
!!! TCCACACTGACTTTTTGTCT+TGG - chr4_4:65477432-65477451 Msa0695790:intron 40.0%
ACCAAGACAAAAAGTCAGTG+TGG + chr4_4:65477436-65477455 None:intergenic 40.0%
GAAGGGTTTCATTCTTGGTA+CGG + chr4_4:65477461-65477480 None:intergenic 40.0%
TCACTGAAGGGTTTCATTCT+TGG + chr4_4:65477466-65477485 None:intergenic 40.0%
TGCAATTGTTCGTCACTGAA+GGG + chr4_4:65477478-65477497 None:intergenic 40.0%
ATGCAATTGTTCGTCACTGA+AGG + chr4_4:65477479-65477498 None:intergenic 40.0%
AAGACTGTTGACACATTGGA+GGG - chr4_4:65477818-65477837 Msa0695790:intron 40.0%
TCCATCAAGTTTAGCCAACA+AGG - chr4_4:65477847-65477866 Msa0695790:intron 40.0%
! ACCTTGTTGGCTAAACTTGA+TGG + chr4_4:65477851-65477870 None:intergenic 40.0%
TCATCTGAAAAAGCGATTGC+AGG - chr4_4:65478027-65478046 Msa0695790:intron 40.0%
CCTTTCATGAAAAGCAAGAC+AGG + chr4_4:65478070-65478089 None:intergenic 40.0%
!! CCTGTCTTGCTTTTCATGAA+AGG - chr4_4:65478067-65478086 Msa0695790:intron 40.0%
!!! AATCCACATTTTGGCTCTTC+AGG + chr4_4:65478097-65478116 None:intergenic 40.0%
CAGTAAAGCTGAGGAAATGT+GGG + chr4_4:65478229-65478248 None:intergenic 40.0%
TTTCCTCAGCTTTACTGCAA+AGG - chr4_4:65478232-65478251 Msa0695790:intron 40.0%
TACTGCAAAGGAGAACTTGT+TGG - chr4_4:65478244-65478263 Msa0695790:intron 40.0%
CAATTGCTATGCATGAGAGT+GGG - chr4_4:65478281-65478300 Msa0695790:intron 40.0%
AATTGCTATGCATGAGAGTG+GGG - chr4_4:65478282-65478301 Msa0695790:intron 40.0%
CTAGAAAGCTTGGTCAATTC+AGG - chr4_4:65478430-65478449 Msa0695790:intron 40.0%
AAACCAGATGAACCTAAGTG+TGG - chr4_4:65478478-65478497 Msa0695790:intron 40.0%
AAACCACACTTAGGTTCATC+TGG + chr4_4:65478484-65478503 None:intergenic 40.0%
ACTGATGAAGAAGTTCGTCA+AGG - chr4_4:65478568-65478587 Msa0695790:intron 40.0%
TCCCCCTTGATATATAGTTG+AGG + chr4_4:65478625-65478644 None:intergenic 40.0%
TATATCAAGGGGGAGCTTAT+TGG - chr4_4:65478631-65478650 Msa0695790:intron 40.0%
GTGTTGGAGATGCAAAAAAG+CGG - chr4_4:65478667-65478686 Msa0695790:intron 40.0%
TGTTGGAGATGCAAAAAAGC+GGG - chr4_4:65478668-65478687 Msa0695790:intron 40.0%
! CGATCTTCAATGGTCTCTTT+TGG + chr4_4:65478730-65478749 None:intergenic 40.0%
TAGTAAAGCTGAGGAAAGGT+AGG + chr4_4:65478940-65478959 None:intergenic 40.0%
TCACCTTTGTAGTAAAGCTG+AGG + chr4_4:65478949-65478968 None:intergenic 40.0%
TACTACAAAGGTGAGCTGAT+AGG - chr4_4:65478955-65478974 Msa0695790:intron 40.0%
ATTATGGAGCTGCGGAATAA+TGG - chr4_4:65478991-65479010 Msa0695790:CDS 40.0%
TATAAGCCACACTATAGCTG+AGG - chr4_4:65479080-65479099 Msa0695790:CDS 40.0%
ATAAGCCACACTATAGCTGA+GGG - chr4_4:65479081-65479100 Msa0695790:CDS 40.0%
TGACATTGTAATGTTCTGCG+TGG - chr4_4:65479138-65479157 Msa0695790:exon 40.0%
GTGTGAAGCTTCCAAACACA+TGG - chr4_4:65476097-65476116 Msa0695790:exon 45.0%
! GAAGAGTTGGTCCATGTGTT+TGG + chr4_4:65476111-65476130 None:intergenic 45.0%
GGACCAACTCTTCTCTCATT+TGG - chr4_4:65476118-65476137 Msa0695790:CDS 45.0%
TGGCCAAATGAGAGAAGAGT+TGG + chr4_4:65476124-65476143 None:intergenic 45.0%
ATGGGTATGAGGGAAATCAG+TGG + chr4_4:65476144-65476163 None:intergenic 45.0%
AGACTATCTGGGAGAGCTTA+CGG + chr4_4:65476908-65476927 None:intergenic 45.0%
! TTTCAGTGGTTGTGGTTCTG+AGG - chr4_4:65477027-65477046 Msa0695790:CDS 45.0%
! TTTTCCTGACCAAGAAGCCA+GGG + chr4_4:65477056-65477075 None:intergenic 45.0%
! ATTTTCCTGACCAAGAAGCC+AGG + chr4_4:65477057-65477076 None:intergenic 45.0%
TCTTGCCAGCTCTGCTTATT+AGG - chr4_4:65477115-65477134 Msa0695790:CDS 45.0%
TTGTTTGTGCTGTGTCTGGT+TGG - chr4_4:65477222-65477241 Msa0695790:CDS 45.0%
AATTACATGTGATTGGGGGG+AGG - chr4_4:65477265-65477284 Msa0695790:CDS 45.0%
ATTACATGTGATTGGGGGGA+GGG - chr4_4:65477266-65477285 Msa0695790:CDS 45.0%
TGGCAAGACTGTTGACACAT+TGG - chr4_4:65477814-65477833 Msa0695790:intron 45.0%
CAAGACTGTTGACACATTGG+AGG - chr4_4:65477817-65477836 Msa0695790:intron 45.0%
GTAGCAGGCTCAATTAACTC+TGG - chr4_4:65477878-65477897 Msa0695790:intron 45.0%
TTCAGATGACTACTAAGCCC+TGG + chr4_4:65478016-65478035 None:intergenic 45.0%
AGTCCTGAAGAGCCAAAATG+TGG - chr4_4:65478091-65478110 Msa0695790:intron 45.0%
TGATATCCTCTCGGATTCAG+AGG - chr4_4:65478171-65478190 Msa0695790:intron 45.0%
GCAGTAAAGCTGAGGAAATG+TGG + chr4_4:65478230-65478249 None:intergenic 45.0%
TCTCCTTTGCAGTAAAGCTG+AGG + chr4_4:65478238-65478257 None:intergenic 45.0%
!! TGCAAAGGAGAACTTGTTGG+CGG - chr4_4:65478247-65478266 Msa0695790:intron 45.0%
GCAATTGCTATGCATGAGAG+TGG - chr4_4:65478280-65478299 Msa0695790:intron 45.0%
AACAGATTCAGGAAACGCCA+AGG - chr4_4:65478360-65478379 Msa0695790:intron 45.0%
ACAGATTCAGGAAACGCCAA+GGG - chr4_4:65478361-65478380 Msa0695790:intron 45.0%
AGATTTAGAGATGCCACCCT+TGG + chr4_4:65478380-65478399 None:intergenic 45.0%
GGGTGGCATCTCTAAATCTA+CGG - chr4_4:65478381-65478400 Msa0695790:intron 45.0%
AACCTAAGTGTGGTTTCAGC+AGG - chr4_4:65478488-65478507 Msa0695790:intron 45.0%
TTCCTGCTGAAACCACACTT+AGG + chr4_4:65478493-65478512 None:intergenic 45.0%
TAAGTGTGGTTTCAGCAGGA+AGG - chr4_4:65478492-65478511 Msa0695790:intron 45.0%
AGAAGTTCGTCAAGGACTCA+AGG - chr4_4:65478576-65478595 Msa0695790:intron 45.0%
! TGGTGGATCTGACATTGTGT+TGG - chr4_4:65478651-65478670 Msa0695790:intron 45.0%
GTTGGAGATGCAAAAAAGCG+GGG - chr4_4:65478669-65478688 Msa0695790:intron 45.0%
!! CTTCATGAAGAGCATCACAG+GGG + chr4_4:65478776-65478795 None:intergenic 45.0%
!! CCTTCATGAAGAGCATCACA+GGG + chr4_4:65478777-65478796 None:intergenic 45.0%
CCTGTGATGCTCTTCATGAA+GGG - chr4_4:65478775-65478794 Msa0695790:intron 45.0%
CTGGAACTAAAACCGCATCT+TGG + chr4_4:65478814-65478833 None:intergenic 45.0%
! AAGTGATGATGAGGTGAGAC+AGG - chr4_4:65478891-65478910 Msa0695790:intron 45.0%
! AGTGATGATGAGGTGAGACA+GGG - chr4_4:65478892-65478911 Msa0695790:intron 45.0%
TACAAAGGTGAGCTGATAGG+CGG - chr4_4:65478958-65478977 Msa0695790:intron 45.0%
AGGCGGTTGCGATATCATTA+TGG - chr4_4:65478975-65478994 Msa0695790:intron 45.0%
GCGATATCATTATGGAGCTG+CGG - chr4_4:65478983-65479002 Msa0695790:CDS 45.0%
CAATACCCTCAGCTATAGTG+TGG + chr4_4:65479089-65479108 None:intergenic 45.0%
!! TAAATATTAAAAACAATATA+CGG + chr4_4:65477382-65477401 None:intergenic 5.0%
TCATCGAGAGAGAGAATGGG+TGG - chr4_4:65475987-65476006 Msa0695790:three_prime_UTR 50.0%
GAGAGAGAGAATGGGTGGTT+CGG - chr4_4:65475992-65476011 Msa0695790:three_prime_UTR 50.0%
GCGAGACGTGAAGTCAAAGT+CGG - chr4_4:65476016-65476035 Msa0695790:three_prime_UTR 50.0%
CGTGAAGTCAAAGTCGGAGT+TGG - chr4_4:65476022-65476041 Msa0695790:three_prime_UTR 50.0%
GTCAAAGTCGGAGTTGGATG+AGG - chr4_4:65476028-65476047 Msa0695790:three_prime_UTR 50.0%
AAAGTCGGAGTTGGATGAGG+TGG - chr4_4:65476031-65476050 Msa0695790:three_prime_UTR 50.0%
CTTATGGACACCGAGTCCAT+GGG - chr4_4:65476667-65476686 Msa0695790:CDS 50.0%
CAATATCTGGCCCATGGACT+CGG + chr4_4:65476680-65476699 None:intergenic 50.0%
TCTGGGAGAGCTTACGGAAA+CGG + chr4_4:65476902-65476921 None:intergenic 50.0%
! TAGGTGAGGAGGCATGTTCA+AGG + chr4_4:65477298-65477317 None:intergenic 50.0%
!! TTCTCCTGCTAGTCTTGGGA+TGG - chr4_4:65477910-65477929 Msa0695790:intron 50.0%
TTCAAGAACAGCGGATCCTG+CGG + chr4_4:65477936-65477955 None:intergenic 50.0%
TCGGATTCAGAGGTTCGTGA+GGG - chr4_4:65478181-65478200 Msa0695790:intron 50.0%
CTGAGGAAATGTGGGCCAAT+TGG + chr4_4:65478221-65478240 None:intergenic 50.0%
!! GCAAAGGAGAACTTGTTGGC+GGG - chr4_4:65478248-65478267 Msa0695790:intron 50.0%
ATCAAGGGGGAGCTTATTGG+TGG - chr4_4:65478634-65478653 Msa0695790:intron 50.0%
CCCTGTGATGCTCTTCATGA+AGG - chr4_4:65478774-65478793 Msa0695790:intron 50.0%
!! CCCTTCATGAAGAGCATCAC+AGG + chr4_4:65478778-65478797 None:intergenic 50.0%
! AACCGCATCTTGGAGCATCT+GGG + chr4_4:65478804-65478823 None:intergenic 50.0%
! AAACCGCATCTTGGAGCATC+TGG + chr4_4:65478805-65478824 None:intergenic 50.0%
! GTGATGATGAGGTGAGACAG+GGG - chr4_4:65478893-65478912 Msa0695790:intron 50.0%
TGAGGTGAGACAGGGGATTA+AGG - chr4_4:65478900-65478919 Msa0695790:intron 50.0%
GAGTTGGATGAGGTGGTTCG+CGG - chr4_4:65476038-65476057 Msa0695790:three_prime_UTR 55.0%
TCCGGTGGTGCTTCACTTCT+GGG - chr4_4:65476067-65476086 Msa0695790:three_prime_UTR 55.0%
TGCTTCACTTCTGGGCGTCA+TGG - chr4_4:65476075-65476094 Msa0695790:three_prime_UTR 55.0%
GCTTATGGACACCGAGTCCA+TGG - chr4_4:65476666-65476685 Msa0695790:CDS 55.0%
!! TTGTGGTTCTGAGGTCTCCC+TGG - chr4_4:65477036-65477055 Msa0695790:CDS 55.0%
CCCAAGACTAGCAGGAGAAG+CGG + chr4_4:65477909-65477928 None:intergenic 55.0%
!! CCGCTTCTCCTGCTAGTCTT+GGG - chr4_4:65477906-65477925 Msa0695790:intron 55.0%
CACGAACCTCTGAATCCGAG+AGG + chr4_4:65478180-65478199 None:intergenic 55.0%
CTCGGATTCAGAGGTTCGTG+AGG - chr4_4:65478180-65478199 Msa0695790:intron 55.0%
GCATGAGAGTGGGGAGTTGA+AGG - chr4_4:65478291-65478310 Msa0695790:intron 55.0%
GATTCAGGAAACGCCAAGGG+TGG - chr4_4:65478364-65478383 Msa0695790:intron 55.0%
AGCCTCTCGGCTAGAAAGCT+TGG - chr4_4:65478420-65478439 Msa0695790:intron 55.0%
! GACCAAGCTTTCTAGCCGAG+AGG + chr4_4:65478425-65478444 None:intergenic 55.0%
!! GAAGAGCATCACAGGGGAAG+AGG + chr4_4:65478770-65478789 None:intergenic 55.0%
ACCCCAGATGCTCCAAGATG+CGG - chr4_4:65478799-65478818 Msa0695790:intron 55.0%
! ACCGCATCTTGGAGCATCTG+GGG + chr4_4:65478803-65478822 None:intergenic 55.0%
!! TCGGAGGGCGTTTACAACTC+TGG + chr4_4:65478833-65478852 None:intergenic 55.0%
AGTTGTAAACGCCCTCCGAG+AGG - chr4_4:65478834-65478853 Msa0695790:CDS 55.0%
AATCCACCACACCCTCCTCT+CGG + chr4_4:65478852-65478871 None:intergenic 55.0%
!!! GAGGAGGGTGTGGTGGATTT+TGG - chr4_4:65478853-65478872 Msa0695790:CDS 55.0%
TTGGATGAGGTGGTTCGCGG+CGG - chr4_4:65476041-65476060 Msa0695790:three_prime_UTR 60.0%
CTCCGGTGGTGCTTCACTTC+TGG - chr4_4:65476066-65476085 Msa0695790:three_prime_UTR 60.0%
! GCCCAGAAGTGAAGCACCAC+CGG + chr4_4:65476071-65476090 None:intergenic 60.0%
CTGAGGTCTCCCTGGCTTCT+TGG - chr4_4:65477044-65477063 Msa0695790:CDS 60.0%
GTCTCCCTGGCTTCTTGGTC+AGG - chr4_4:65477049-65477068 Msa0695790:CDS 60.0%
! GCCGCTTCTCCTGCTAGTCT+TGG - chr4_4:65477905-65477924 Msa0695790:intron 60.0%
TGTAAACGCCCTCCGAGAGG+AGG - chr4_4:65478837-65478856 Msa0695790:CDS 60.0%
GTAAACGCCCTCCGAGAGGA+GGG - chr4_4:65478838-65478857 Msa0695790:CDS 60.0%
GCGGCCATCCCAAGACTAGC+AGG + chr4_4:65477917-65477936 None:intergenic 65.0%
!! GCTAGTCTTGGGATGGCCGC+AGG - chr4_4:65477917-65477936 Msa0695790:intron 65.0%
CACCACACCCTCCTCTCGGA+GGG + chr4_4:65478848-65478867 None:intergenic 65.0%
GGTGGTTCGCGGCGGTTCTC+CGG - chr4_4:65476049-65476068 Msa0695790:three_prime_UTR 70.0%
CCACCACACCCTCCTCTCGG+AGG + chr4_4:65478849-65478868 None:intergenic 70.0%
! CCTCCGAGAGGAGGGTGTGG+TGG - chr4_4:65478846-65478865 Msa0695790:CDS 70.0%
GGTTCGCGGCGGTTCTCCGG+TGG - chr4_4:65476052-65476071 Msa0695790:three_prime_UTR 75.0%
CGCCCTCCGAGAGGAGGGTG+TGG - chr4_4:65478843-65478862 Msa0695790:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 65475901 65479253 65475901 ID=Msa0695790;Name=Msa0695790
chr4_4 mRNA 65475901 65479253 65475901 ID=Msa0695790-mRNA-1;Parent=Msa0695790;Name=Msa0695790-mRNA-1;_AED=0.03;_eAED=0.03;_QI=101|1|1|1|1|1|3|212|491
chr4_4 exon 65475901 65477342 65475901 ID=Msa0695790-mRNA-1:exon:18886;Parent=Msa0695790-mRNA-1
chr4_4 exon 65478817 65478891 65478817 ID=Msa0695790-mRNA-1:exon:18885;Parent=Msa0695790-mRNA-1
chr4_4 exon 65478982 65479253 65478982 ID=Msa0695790-mRNA-1:exon:18884;Parent=Msa0695790-mRNA-1
chr4_4 five_prime_UTR 65479153 65479253 65479153 ID=Msa0695790-mRNA-1:five_prime_utr;Parent=Msa0695790-mRNA-1
chr4_4 CDS 65478982 65479152 65478982 ID=Msa0695790-mRNA-1:cds;Parent=Msa0695790-mRNA-1
chr4_4 CDS 65478817 65478891 65478817 ID=Msa0695790-mRNA-1:cds;Parent=Msa0695790-mRNA-1
chr4_4 CDS 65476113 65477342 65476113 ID=Msa0695790-mRNA-1:cds;Parent=Msa0695790-mRNA-1
chr4_4 three_prime_UTR 65475901 65476112 65475901 ID=Msa0695790-mRNA-1:three_prime_utr;Parent=Msa0695790-mRNA-1
Gene Sequence

>Msa0695790

ATGGGTGGTTCGGTGCGAGACGTGAAGTCAAAGTCGGAGTTGGATGAGGTGGTTCGCGGCGGTTCTCCGGTGGTGCTTCACTTCTGGGCGTCATGGTGTGAAGCTTCCAAACACATGGACCAACTCTTCTCTCATTTGGCCACTGATTTCCCTCATACCCATTTCTTAAGGGTTGAAGCTGAAGAACAACCAGAGATATCTGAGGCTTATTCTGTCTCTGCTGTTCCTTTTTTTGTCTTCTTCAAGGATGGCAAGACTGTTGACACATTGGAGGGAGCTGATCCATCAAGTTTAGCCAACAAGGTTTCAAAAGTAGCAGGCTCAATTAACTCTGGAGATGCCGCTTCTCCTGCTAGTCTTGGGATGGCCGCAGGATCCGCTGTTCTTGAAACAGTGAAAGAATTAGCGCAAGACAATTTATCTTCAAACGAAAAAAGTAAAGTTCAACCAGGGCTTAGTAGTCATCTGAAAAAGCGATTGCAGGAGCTCGTCGACTCTCATCCTGTCTTGCTTTTCATGAAAGGGAGTCCTGAAGAGCCAAAATGTGGATTTAGCAGAAAAGTTGTTGATATTTTGAAGGAAGAGAAGGTTAAGTTTGGAAGTTTTGATATCCTCTCGGATTCAGAGGTTCGTGAGGGCTTGAAGAAGTTTTCCAATTGGCCCACATTTCCTCAGCTTTACTGCAAAGGAGAACTTGTTGGCGGGTGTGACATAGCAATTGCTATGCATGAGAGTGGGGAGTTGAAGGATGTTTTCAAAGATCACGGAATTGATACCGTTGATGAAACAAATATAACAGATTCAGGAAACGCCAAGGGTGGCATCTCTAAATCTACGGATTTGAGTACAAATTTAGCCTCTCGGCTAGAAAGCTTGGTCAATTCAGGCTCAGTTATGCTGTTTATGAAGGGAAAACCAGATGAACCTAAGTGTGGTTTCAGCAGGAAGGTAGTTGAAATTCTCCGACAAGAAAATGTTCCGTTTGAGAGTTTTGACATTCTTACTGATGAAGAAGTTCGTCAAGGACTCAAGGTTTATTCAAACTGGTCCAGTTATCCTCAACTATATATCAAGGGGGAGCTTATTGGTGGATCTGACATTGTGTTGGAGATGCAAAAAAGCGGGGAACTTAAGAAAACTTTACATGGGAAAGGGGTTCTTCCAAAAGAGACCATTGAAGATCGTTTGAAGAAATTGATTTCCTCTTCCCCTGTGATGCTCTTCATGAAGGGTACCCCAGATGCTCCAAGATGCGGTTTTAGTTCCAGAGTTGTAAACGCCCTCCGAGAGGAGGGTGTGGTGGATTTTGGTCACTTTGATATATTAAGTGATGATGAGGTGAGACAGGGGATTAAGGTATTCTCAAATTGGCCTACCTTTCCTCAGCTTTACTACAAAGGTGAGCTGATAGGCGGTTGCGATATCATTATGGAGCTGCGGAATAATGGAGAGCTGAAGTCAACTTTATCTGAGTAG
Protein sequence

>Msa0695790

MGGSVRDVKSKSELDEVVRGGSPVVLHFWASWCEASKHMDQLFSHLATDFPHTHFLRVEAEEQPEISEAYSVSAVPFFVFFKDGKTVDTLEGADPSSLANKVSKVAGSINSGDAASPASLGMAAGSAVLETVKELAQDNLSSNEKSKVQPGLSSHLKKRLQELVDSHPVLLFMKGSPEEPKCGFSRKVVDILKEEKVKFGSFDILSDSEVREGLKKFSNWPTFPQLYCKGELVGGCDIAIAMHESGELKDVFKDHGIDTVDETNITDSGNAKGGISKSTDLSTNLASRLESLVNSGSVMLFMKGKPDEPKCGFSRKVVEILRQENVPFESFDILTDEEVRQGLKVYSNWSSYPQLYIKGELIGGSDIVLEMQKSGELKKTLHGKGVLPKETIEDRLKKLISSSPVMLFMKGTPDAPRCGFSSRVVNALREEGVVDFGHFDILSDDEVRQGIKVFSNWPTFPQLYYKGELIGGCDIIMELRNNGELKSTLSE*