AlfalfaGEDB | Msa1270620

M. sativa cultivar zhongmu-4 / Msa1270620

KEGG: -
GO: GO:0002181 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005844 GO:0006355 GO:0006357 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007568 GO:0007569 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010469 GO:0010556 GO:0010646 GO:0010647 GO:0014070 GO:0019219 GO:0019222 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0032991 GO:0033143 GO:0033145 GO:0033554 GO:0033574 GO:0033993 GO:0034599 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043401 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0060765 GO:0065007 GO:0065009 GO:0070887 GO:0071310 GO:0071383 GO:0071394 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0080090 GO:1901564 GO:1901566 GO:1901576 GO:1901654 GO:1901655 GO:1901700 GO:1901701 GO:1903506 GO:1990904 GO:2000112 GO:2000273 GO:2000823 GO:2000825 GO:2001141
PFAM: PF05773.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1270620	XP_013444254.1	99.213	254	2	0	1	254	1	254	0.0	510

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1270620	sp\|Q9CQK7\|RWDD1_MOUSE	34.766	256	143	6	1	246	1	242	1.36e-27	109

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1270620	A0A072TM40	99.213	254	2	0	1	254	1	254	0.0	510

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004060	Msa1270620	0.816165	6.365988e-52	-8.615850e-47
Msa0004540	Msa1270620	0.811471	6.887433e-51	-8.615850e-47
Msa0004950	Msa1270620	0.820954	5.221019e-53	-8.615850e-47
Msa0004980	Msa1270620	0.812294	4.558993e-51	-8.615850e-47
Msa0006290	Msa1270620	0.839777	1.293798e-57	-8.615850e-47
Msa0006880	Msa1270620	0.860138	2.544953e-63	-8.615850e-47
Msa0007850	Msa1270620	0.914048	3.024713e-84	-8.615850e-47
Msa0008090	Msa1270620	0.860050	2.705140e-63	-8.615850e-47
Msa0008200	Msa1270620	0.807793	4.249182e-50	-8.615850e-47
Msa0010490	Msa1270620	0.834740	2.516616e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1270620	MtrunA17_Chr8g0341531	99.213	254	2	0	1	254	1	254	0.0	510

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1270620	AT1G51730.1	70.445	247	71	2	1	246	1	246	8.09e-106	306

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Find 61 sgRNAs with CRISPR-Local

Find 485 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTTGGGAATACCTGTCA+TGG	0.615517	8_3:+3975845	None:intergenic
AACTCCCTCAAAAGACAACA+AGG	0.666325	8_3:+3969007	None:intergenic
AAGTGTAAAGATTGAAGTGA+AGG	0.625529	8_3:+3975908	None:intergenic
ACAGTAACTGCTTCTCCATG+AGG	0.657769	8_3:+3972448	None:intergenic
ACCTGTCATGGTGAGTTAGT+TGG	0.434602	8_3:+3975857	None:intergenic
ACTATACAAAACAGTTTGCA+AGG	0.496821	8_3:-3973823	Msa1270620:intron
AGAAACTCACTGGCAGACAG+TGG	0.676924	8_3:-3971925	Msa1270620:CDS
AGAAATGGAGATTGAAGCAT+TGG	0.464035	8_3:-3975717	Msa1270620:CDS
AGATTGAAGTGAAGGTGTGA+AGG	0.655066	8_3:+3975916	None:intergenic
AGATTTGGATGAGGAGGATG+AGG	0.441858	8_3:-3969280	Msa1270620:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTGTAAAGATTGAAGTGA+AGG	+	chr8_3:3968852-3968871	None:intergenic	30.0%
AGAGTTGGAGATTGAAATTT+GGG	+	chr8_3:3968929-3968948	None:intergenic	30.0%
ATAGAATGAAATTGGAGAGT+TGG	+	chr8_3:3968944-3968963	None:intergenic	30.0%
ATACTCATGGATGAATTCAA+AGG	-	chr8_3:3969068-3969087	Msa1270620:exon	30.0%
CTATCTGGTAAAATAAACTG+CGG	-	chr8_3:3969348-3969367	Msa1270620:intron	30.0%
CTGATTGAATTTGTAGTGTT+TGG	-	chr8_3:3969394-3969413	Msa1270620:intron	30.0%
GTAGTGTTTGGTAAAATTAG+TGG	-	chr8_3:3969406-3969425	Msa1270620:intron	30.0%
TAAATACCGAAAAGTGATAC+GGG	+	chr8_3:3969713-3969732	None:intergenic	30.0%
GTAAATACCGAAAAGTGATA+CGG	+	chr8_3:3969714-3969733	None:intergenic	30.0%
ATGTTTATGGAGAAGTTGAA+TGG	-	chr8_3:3969992-3970011	Msa1270620:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	3968765	3976014	3968765	ID=Msa1270620;Name=Msa1270620
chr8_3	mRNA	3968765	3976014	3968765	ID=Msa1270620-mRNA-1;Parent=Msa1270620;Name=Msa1270620-mRNA-1;_AED=0.10;_eAED=0.10;_QI=126\|1\|1\|1\|0.90\|0.83\|12\|305\|254
chr8_3	exon	3968765	3969149	3968765	ID=Msa1270620-mRNA-1:exon:1299;Parent=Msa1270620-mRNA-1
chr8_3	exon	3969244	3969325	3969244	ID=Msa1270620-mRNA-1:exon:1298;Parent=Msa1270620-mRNA-1
chr8_3	exon	3971907	3971985	3971907	ID=Msa1270620-mRNA-1:exon:1297;Parent=Msa1270620-mRNA-1
chr8_3	exon	3972388	3972479	3972388	ID=Msa1270620-mRNA-1:exon:1296;Parent=Msa1270620-mRNA-1
chr8_3	exon	3973397	3973522	3973397	ID=Msa1270620-mRNA-1:exon:1295;Parent=Msa1270620-mRNA-1
chr8_3	exon	3973774	3973831	3973774	ID=Msa1270620-mRNA-1:exon:1294;Parent=Msa1270620-mRNA-1
chr8_3	exon	3973966	3974038	3973966	ID=Msa1270620-mRNA-1:exon:1293;Parent=Msa1270620-mRNA-1
chr8_3	exon	3974218	3974251	3974218	ID=Msa1270620-mRNA-1:exon:1292;Parent=Msa1270620-mRNA-1
chr8_3	exon	3975522	3975589	3975522	ID=Msa1270620-mRNA-1:exon:1291;Parent=Msa1270620-mRNA-1
chr8_3	exon	3975690	3975755	3975690	ID=Msa1270620-mRNA-1:exon:1290;Parent=Msa1270620-mRNA-1
chr8_3	exon	3975859	3975943	3975859	ID=Msa1270620-mRNA-1:exon:1289;Parent=Msa1270620-mRNA-1
chr8_3	exon	3975967	3976014	3975967	ID=Msa1270620-mRNA-1:exon:1288;Parent=Msa1270620-mRNA-1
chr8_3	five_prime_UTR	3975967	3976014	3975967	ID=Msa1270620-mRNA-1:five_prime_utr;Parent=Msa1270620-mRNA-1
chr8_3	five_prime_UTR	3975866	3975943	3975866	ID=Msa1270620-mRNA-1:five_prime_utr;Parent=Msa1270620-mRNA-1
chr8_3	CDS	3975859	3975865	3975859	ID=Msa1270620-mRNA-1:cds;Parent=Msa1270620-mRNA-1
chr8_3	CDS	3975690	3975755	3975690	ID=Msa1270620-mRNA-1:cds;Parent=Msa1270620-mRNA-1
chr8_3	CDS	3975522	3975589	3975522	ID=Msa1270620-mRNA-1:cds;Parent=Msa1270620-mRNA-1
chr8_3	CDS	3974218	3974251	3974218	ID=Msa1270620-mRNA-1:cds;Parent=Msa1270620-mRNA-1
chr8_3	CDS	3973966	3974038	3973966	ID=Msa1270620-mRNA-1:cds;Parent=Msa1270620-mRNA-1
chr8_3	CDS	3973774	3973831	3973774	ID=Msa1270620-mRNA-1:cds;Parent=Msa1270620-mRNA-1
chr8_3	CDS	3973397	3973522	3973397	ID=Msa1270620-mRNA-1:cds;Parent=Msa1270620-mRNA-1
chr8_3	CDS	3972388	3972479	3972388	ID=Msa1270620-mRNA-1:cds;Parent=Msa1270620-mRNA-1
chr8_3	CDS	3971907	3971985	3971907	ID=Msa1270620-mRNA-1:cds;Parent=Msa1270620-mRNA-1
chr8_3	CDS	3969244	3969325	3969244	ID=Msa1270620-mRNA-1:cds;Parent=Msa1270620-mRNA-1
chr8_3	CDS	3969070	3969149	3969070	ID=Msa1270620-mRNA-1:cds;Parent=Msa1270620-mRNA-1
chr8_3	three_prime_UTR	3968765	3969069	3968765	ID=Msa1270620-mRNA-1:three_prime_utr;Parent=Msa1270620-mRNA-1

Gene Sequence

>Msa1270620

ATGACAGACTACGCGCAAGAACAAGAAATGGAGATTGAAGCATTGGAAGCTATACTCATGGATGAATTCAAAGAAATACATTCTGGTGAAAGTGGTTTAAGCACTTCCAATAGGTGCTTCCAGATTAAAATAACTGCTCAGGAGGAAGATGGAGACGAGTCAAATACTAATCCAGCTCAACAACTGGCTTTGATCTTCGCGCACACAGAAAAATATCCAGATGAACCTCCGCTTTTGAATGTGAGCAGTTTGCAAGGAATATCGTCTGAAGATTTAAGGATTTTGAAGGACAAACTTCAACAAGAGGCATCTGAAAATCTTGGCATGGCTATGATTTACACACTTGTTAGCTCAGCTAAAGAGTGGTTGACTGAGCGGTATTGTGAAGACTCAGATGGTGATGCTGAAGCAGAAGAGGCGGCCAAAGAAGATATAGTGGTACCTCATGGAGAAGCAGTTACTGTTGAAACATTTTTGGCATGGAGGGAAAGGTTTGAAGCTGAACTAGCACTTGAACGAGCCAAGCTAATGCCAGAGTCTGTGCTTGCTACTTCGAAGGAAAAGAAACTCACTGGCAGACAGTGGTTTGAAAGTGGAAGGATGAAAGGTGCAGCTGTTGTCACTGAAGATTTGGATGAGGAGGATGAGGAAGACATTGACTTTGATGATGATGAGGATTTCGAAGATGATGAAGATGATATGCTTGAGCATTATCTAGCTGAAAAATCTGATTCATCCACACATTCTTCCATGCGAGCGAGTTAA

Protein sequence

>Msa1270620

MTDYAQEQEMEIEALEAILMDEFKEIHSGESGLSTSNRCFQIKITAQEEDGDESNTNPAQQLALIFAHTEKYPDEPPLLNVSSLQGISSEDLRILKDKLQQEASENLGMAMIYTLVSSAKEWLTERYCEDSDGDAEAEEAAKEDIVVPHGEAVTVETFLAWRERFEAELALERAKLMPESVLATSKEKKLTGRQWFESGRMKGAAVVTEDLDEEDEEDIDFDDDEDFEDDEDDMLEHYLAEKSDSSTHSSMRAS*