AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0241830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0241830 MtrunA17_Chr2g0293551 98.616 289 4 0 1 289 1 289 0.0 591
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0241830 AT1G30630.1 74.740 289 73 0 1 289 4 292 2.14e-169 471
Msa0241830 AT2G34840.1 75.347 288 71 0 2 289 6 293 2.21e-169 471
Msa0241830 AT2G34840.2 75.701 214 52 0 76 289 1 214 1.31e-125 357

Find 73 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAGATTTGCCAGTGTTTC+TGG 0.104502 2_2:+17837190 None:intergenic
CACATTTACCCAATTGATTA+TGG 0.125106 2_2:+17835600 None:intergenic
CAAAATCACATGCTCATTAT+TGG 0.267327 2_2:+17835408 None:intergenic
TGCAAATGCTTGGCTTGATT+TGG 0.285359 2_2:-17838582 Msa0241830:CDS
CAATTGGGTAAATGTGTTAC+AGG 0.287228 2_2:-17835593 Msa0241830:three_prime_UTR
GGTGTTGCCATTGATGGATT+TGG 0.309559 2_2:+17839479 None:intergenic
TGATGAAGCTGAGACTCTTT+TGG 0.330291 2_2:-17837536 Msa0241830:CDS
CCTTATCATGGCTATTGTAT+TGG 0.338317 2_2:-17835627 Msa0241830:three_prime_UTR
AACCATCTTCTAAATCATTC+AGG 0.343553 2_2:-17837144 Msa0241830:intron
ACATTTACCCAATTGATTAT+GGG 0.350179 2_2:+17835601 None:intergenic
TGATCTGGTGTTGCCATTGA+TGG 0.355074 2_2:+17839473 None:intergenic
ATTGGTTTCCCATAATCAAT+TGG 0.366163 2_2:-17835609 Msa0241830:three_prime_UTR
GTAGCATTGTTCCCAATTGC+AGG 0.373136 2_2:+17839099 None:intergenic
GCTACGTTGAGGCTTGTTGC+TGG 0.380071 2_2:-17839081 Msa0241830:CDS
TGGCTTGCAGATCCTGCAAT+TGG 0.388117 2_2:-17839111 Msa0241830:CDS
GATATCTCTCAGACAAATCT+TGG 0.389822 2_2:+17837617 None:intergenic
TACCTGAATGATTTAGAAGA+TGG 0.403328 2_2:+17837142 None:intergenic
AGGAGCAGAATCGTTGATTT+CGG 0.403329 2_2:+17839295 None:intergenic
GGAAGATCAAATGCGCCTCT+TGG 0.403390 2_2:+17837638 None:intergenic
GTTGTATGCTGTCTTCATCT+TGG 0.408937 2_2:-17837169 Msa0241830:CDS
CTCTTGACCAGTACATGATC+TGG 0.409709 2_2:+17835764 None:intergenic
GGCTGTTTGCTGCATGCAAA+TGG 0.409788 2_2:-17837566 Msa0241830:CDS
GATATTATTCATGATTTGAA+TGG 0.413253 2_2:-17835678 Msa0241830:three_prime_UTR
ATAGAGAGCGAGCAATTTAA+CGG 0.433280 2_2:+17839259 None:intergenic
TCTACTAGTTTGCTCTTGAA+TGG 0.434996 2_2:-17837592 Msa0241830:CDS
TTGGTTTCCCATAATCAATT+GGG 0.441261 2_2:-17835608 Msa0241830:three_prime_UTR
AACAAAATTAATATCAGCTA+TGG 0.442245 2_2:+17835522 None:intergenic
CGCTGCTGTTGATTGCAGCT+TGG 0.447662 2_2:+17839411 None:intergenic
TTACTCAGCTTGCAAATGCT+TGG 0.460646 2_2:-17838592 Msa0241830:CDS
TGAAATTGTAACCTTTGAAT+CGG 0.463883 2_2:+17839226 None:intergenic
ATGATGAATTTGTGTAGTAC+TGG 0.464217 2_2:+17839517 None:intergenic
TATGTCGTCGGGAGAGAGGT+TGG 0.471135 2_2:+17839382 None:intergenic
GGCTTGCAGATCCTGCAATT+GGG 0.471416 2_2:-17839110 Msa0241830:CDS
TATCGTTGCTACATCGCTCT+TGG 0.471667 2_2:-17839338 Msa0241830:CDS
CCAATACAATAGCCATGATA+AGG 0.478627 2_2:+17835627 None:intergenic
CAATCTGTTTCGTGAGCTCA+TGG 0.482245 2_2:-17835704 Msa0241830:exon
TGTGATTTGTGCAGGATGCT+AGG 0.494756 2_2:-17837216 Msa0241830:intron
CTACGTTGAGGCTTGTTGCT+GGG 0.494907 2_2:-17839080 Msa0241830:CDS
CGGAGGTTGAAGAGGTGATC+TGG 0.496215 2_2:+17839458 None:intergenic
CTGGGTGTGAAAGTTTCAGC+TGG 0.516866 2_2:+17835783 None:intergenic
GTCGCGTTCGATTATGTCGT+CGG 0.519121 2_2:+17839370 None:intergenic
TGCTTGGCTTGATTTGGCTG+TGG 0.525363 2_2:-17838576 Msa0241830:intron
AGTTGTTGCGGAGGTTGAAG+AGG 0.528845 2_2:+17839450 None:intergenic
GAAATTGTAACCTTTGAATC+GGG 0.529238 2_2:+17839227 None:intergenic
TTTCTCATCACCCGATTCAA+AGG 0.531346 2_2:-17839237 Msa0241830:intron
TCTAGATCCAAATCCATCAA+TGG 0.532472 2_2:-17839486 Msa0241830:exon
TCGCGTTCGATTATGTCGTC+GGG 0.546258 2_2:+17839371 None:intergenic
CTCCGCAACAACTTCTACCT+CGG 0.548277 2_2:-17839440 Msa0241830:CDS
CGATTATGTCGTCGGGAGAG+AGG 0.551111 2_2:+17839378 None:intergenic
CGATCGCGAGTATTAAAGAA+TGG 0.554403 2_2:-17839131 Msa0241830:CDS
GTGATTTGTGCAGGATGCTA+GGG 0.562390 2_2:-17837215 Msa0241830:intron
ACTATCACAAATCAAAACAC+TGG 0.566799 2_2:-17839568 Msa0241830:five_prime_UTR
TAGTTTGCTCTTGAATGGCA+AGG 0.567959 2_2:-17837587 Msa0241830:CDS
TCTTGACCAGTACATGATCT+GGG 0.583999 2_2:+17835765 None:intergenic
TGCTAGGGATCCAGAAACAC+TGG 0.586587 2_2:-17837200 Msa0241830:CDS
ATTATGCTGAGAGACAGCTT+AGG 0.588117 2_2:-17838646 Msa0241830:CDS
CAGATCATGTACTGGTCAAG+AGG 0.589094 2_2:-17835763 Msa0241830:CDS
AAATCTTTATTAAGATGCAT+AGG 0.590426 2_2:-17838673 Msa0241830:CDS
TTCACACCCAGATCATGTAC+TGG 0.591368 2_2:-17835771 Msa0241830:CDS
GCTGTTTGCTGCATGCAAAT+GGG 0.591850 2_2:-17837565 Msa0241830:CDS
CGAGGTAGAAGTTGTTGCGG+AGG 0.594425 2_2:+17839441 None:intergenic
TACTAATGCTGGTGGAACCA+TGG 0.596370 2_2:-17839013 Msa0241830:CDS
GCGTTGAAGTATACTAATGC+TGG 0.597020 2_2:-17839024 Msa0241830:CDS
CACCGAGGTAGAAGTTGTTG+CGG 0.603080 2_2:+17839438 None:intergenic
GCATGAACAGGATTTCAATG+AGG 0.619909 2_2:-17839046 Msa0241830:CDS
TTTGGTGGAAGCACTCAACA+AGG 0.627745 2_2:-17837518 Msa0241830:intron
TTGAAGTATACTAATGCTGG+TGG 0.633802 2_2:-17839021 Msa0241830:CDS
TTCATGATTTGAATGGTGTG+TGG 0.644264 2_2:-17835671 Msa0241830:three_prime_UTR
AGATCATGTACTGGTCAAGA+GGG 0.649201 2_2:-17835762 Msa0241830:CDS
TTGGGAACAATGCTACGTTG+AGG 0.655531 2_2:-17839092 Msa0241830:CDS
TTAACGGCTTGAAGAGACGT+AGG 0.656056 2_2:+17839275 None:intergenic
TTGCAGCTTGGTATGCACCG+AGG 0.725254 2_2:+17839423 None:intergenic
GGGAGGGGCGAAGATCCAAG+AGG 0.749423 2_2:-17837653 Msa0241830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTGATAATAATTTTAAAAAT+TGG - chr2_2:17836528-17836547 Msa0241830:intron 10.0%
!!! TTTTTTTAACTTTTAAATGT+AGG - chr2_2:17836712-17836731 Msa0241830:intron 10.0%
!!! TTTTTTAACTTTTAAATGTA+GGG - chr2_2:17836713-17836732 Msa0241830:intron 10.0%
!! AAAAAATTCAATATAGACAT+AGG - chr2_2:17836744-17836763 Msa0241830:intron 15.0%
!! AAAAATTCAATATAGACATA+GGG - chr2_2:17836745-17836764 Msa0241830:intron 15.0%
!! GATGTATTGAATTTATTAAA+GGG + chr2_2:17837077-17837096 None:intergenic 15.0%
!! TGATGTATTGAATTTATTAA+AGG + chr2_2:17837078-17837097 None:intergenic 15.0%
!! TTCATCAAGTAATAATAATA+AGG + chr2_2:17837165-17837184 None:intergenic 15.0%
!!! TTATCAAACATTAAAAGTTT+TGG + chr2_2:17837600-17837619 None:intergenic 15.0%
!!! AATTAAAAACTTTGGAATAT+AGG - chr2_2:17838140-17838159 Msa0241830:intron 15.0%
!!! ATTAAAAACTTTGGAATATA+GGG - chr2_2:17838141-17838160 Msa0241830:intron 15.0%
!!! TATATATGATAATAGAGTTT+TGG + chr2_2:17838606-17838625 None:intergenic 15.0%
!!! TTGCTTTTATACAATATAAT+AGG + chr2_2:17839538-17839557 None:intergenic 15.0%
!!! TTTTATTGTGAAATGGATTT+GGG + chr2_2:17835381-17835400 None:intergenic 20.0%
!!! TTTATCGTTATTGTTATTGT+AGG - chr2_2:17835830-17835849 Msa0241830:intron 20.0%
!! TTAAAAATATCTCTGTGATT+TGG - chr2_2:17836115-17836134 Msa0241830:intron 20.0%
!!! AGTGTAAAACTGTTTTTTTA+CGG - chr2_2:17836165-17836184 Msa0241830:intron 20.0%
!! AAATCTTTATTAAGATGCAT+AGG - chr2_2:17836317-17836336 Msa0241830:intron 20.0%
!!! CATCAACATTTTCAATAATA+AGG + chr2_2:17836468-17836487 None:intergenic 20.0%
!!! TTATTGAAAATGTTGATGAA+AGG - chr2_2:17836470-17836489 Msa0241830:intron 20.0%
!!! TATTGAAAATGTTGATGAAA+GGG - chr2_2:17836471-17836490 Msa0241830:intron 20.0%
!! TGCTATGTAGATTATTATTA+GGG - chr2_2:17836627-17836646 Msa0241830:intron 20.0%
!!! TGCAAGTAAATAAGTTTTTA+TGG - chr2_2:17836812-17836831 Msa0241830:intron 20.0%
!! GCTTATGAATAATACATAAA+AGG - chr2_2:17836903-17836922 Msa0241830:intron 20.0%
!!! TTAAACTTTTTAGATGATCA+TGG + chr2_2:17836987-17837006 None:intergenic 20.0%
!!! CAATGCAAAATTTCTATTTT+TGG - chr2_2:17837028-17837047 Msa0241830:intron 20.0%
!! AATATCAAACAACTGAAAAT+TGG + chr2_2:17837630-17837649 None:intergenic 20.0%
!! AATCACAAGATAAAAAAAGA+GGG + chr2_2:17837903-17837922 None:intergenic 20.0%
!! AAATCACAAGATAAAAAAAG+AGG + chr2_2:17837904-17837923 None:intergenic 20.0%
!!! TCTATAATTTTAATACCTGT+GGG - chr2_2:17838035-17838054 Msa0241830:intron 20.0%
!!! TGCATATCATTAAAATCTTT+TGG - chr2_2:17838180-17838199 Msa0241830:intron 20.0%
!!! GCATATCATTAAAATCTTTT+GGG - chr2_2:17838181-17838200 Msa0241830:intron 20.0%
!! ATTAAACCTAAAATGTTTCA+TGG - chr2_2:17838272-17838291 Msa0241830:intron 20.0%
!! AACATCATTTGTAAGAATAA+CGG - chr2_2:17838479-17838498 Msa0241830:intron 20.0%
!! ATATCTGATTATGTATTTCT+TGG - chr2_2:17838964-17838983 Msa0241830:intron 20.0%
!! GATATTATTCATGATTTGAA+TGG - chr2_2:17839312-17839331 Msa0241830:CDS 20.0%
!! AACAAAATTAATATCAGCTA+TGG + chr2_2:17839471-17839490 None:intergenic 20.0%
!!! TGTTTCCATTATATTTTTAC+TGG - chr2_2:17839498-17839517 Msa0241830:five_prime_UTR 20.0%
!!! CTTTTCCAGTAAAAATATAA+TGG + chr2_2:17839506-17839525 None:intergenic 20.0%
!!! CTTTTATTGTGAAATGGATT+TGG + chr2_2:17835382-17835401 None:intergenic 25.0%
!!! TTTTGAAGAGAAAGAGAAAT+GGG + chr2_2:17835453-17835472 None:intergenic 25.0%
! TGAAATTGTAACCTTTGAAT+CGG + chr2_2:17835767-17835786 None:intergenic 25.0%
!!! TTTTTTTTCTTACAGTTCCA+TGG + chr2_2:17835997-17836016 None:intergenic 25.0%
!!! ATGTTGGTTTTGTGTTTTTT+AGG - chr2_2:17836278-17836297 Msa0241830:intron 25.0%
! AAAAATTGGAAGTGATTGAA+TGG - chr2_2:17836542-17836561 Msa0241830:intron 25.0%
! GTGCTATGTAGATTATTATT+AGG - chr2_2:17836626-17836645 Msa0241830:intron 25.0%
!!! CATTAGAAAACTTGTTATCA+GGG + chr2_2:17836653-17836672 None:intergenic 25.0%
!!! TCATTAGAAAACTTGTTATC+AGG + chr2_2:17836654-17836673 None:intergenic 25.0%
!! AAGTTTTTATGGCAATTCAT+AGG - chr2_2:17836823-17836842 Msa0241830:intron 25.0%
!! AGGTTTGAAAATAGATGTTT+TGG - chr2_2:17837270-17837289 Msa0241830:intron 25.0%
!!! TTGAAAATAGATGTTTTGGT+TGG - chr2_2:17837274-17837293 Msa0241830:intron 25.0%
! AATGAAGATTGAAATTCTGT+TGG - chr2_2:17837656-17837675 Msa0241830:intron 25.0%
!! GCTCTTTAGTTTAAATCTTT+AGG - chr2_2:17837678-17837697 Msa0241830:intron 25.0%
!!! ATTATTGGTTTTGTTGGAAA+TGG - chr2_2:17837729-17837748 Msa0241830:intron 25.0%
! ATCACAAGATAAAAAAAGAG+GGG + chr2_2:17837902-17837921 None:intergenic 25.0%
!!! CTCTATAATTTTAATACCTG+TGG - chr2_2:17838034-17838053 Msa0241830:intron 25.0%
! GCTCTTTCAATTAAAAACTT+TGG - chr2_2:17838132-17838151 Msa0241830:intron 25.0%
!!! AAAATCTTTTGGGTTTAGAA+TGG - chr2_2:17838191-17838210 Msa0241830:intron 25.0%
!! TCATTTTACAGTTTCACTAT+TGG + chr2_2:17838578-17838597 None:intergenic 25.0%
!!! CAAGTATTTTTGATTGCTAA+GGG + chr2_2:17838778-17838797 None:intergenic 25.0%
!!! TCAAGTATTTTTGATTGCTA+AGG + chr2_2:17838779-17838798 None:intergenic 25.0%
! ATTTACAGCGTAAATTAAAG+AGG + chr2_2:17838837-17838856 None:intergenic 25.0%
! ATTTACAAGTTACTCACTAA+TGG + chr2_2:17839171-17839190 None:intergenic 25.0%
! ACATTTACCCAATTGATTAT+GGG + chr2_2:17839392-17839411 None:intergenic 25.0%
!!! AGTGTTTTGATTTGTGATAG+TGG + chr2_2:17835423-17835442 None:intergenic 30.0%
ACTATCACAAATCAAAACAC+TGG - chr2_2:17835422-17835441 Msa0241830:three_prime_UTR 30.0%
!!! GTTTTGAAGAGAAAGAGAAA+TGG + chr2_2:17835454-17835473 None:intergenic 30.0%
ATGATGAATTTGTGTAGTAC+TGG + chr2_2:17835476-17835495 None:intergenic 30.0%
GAAATTGTAACCTTTGAATC+GGG + chr2_2:17835766-17835785 None:intergenic 30.0%
! GATTATCTTTTTGCATGAAC+AGG - chr2_2:17835932-17835951 Msa0241830:intron 30.0%
! TCAGATTGATGGTTTCTTAT+TGG + chr2_2:17836066-17836085 None:intergenic 30.0%
GATATGACATATCAGATTGA+TGG + chr2_2:17836077-17836096 None:intergenic 30.0%
! AAAATATCTCTGTGATTTGG+TGG - chr2_2:17836118-17836137 Msa0241830:intron 30.0%
!!! AAACTGTTTTTTTACGGTGT+CGG - chr2_2:17836171-17836190 Msa0241830:intron 30.0%
!! TTGATAATGATGATGAGAAG+AGG - chr2_2:17836231-17836250 Msa0241830:intron 30.0%
!! CATGCTTTTAATTCAAGTGT+CGG - chr2_2:17836604-17836623 Msa0241830:intron 30.0%
! ATATAGACATAGGGTTTGTT+TGG - chr2_2:17836754-17836773 Msa0241830:intron 30.0%
! TTTTCATAAACTACCTTGAC+AGG - chr2_2:17836881-17836900 Msa0241830:intron 30.0%
TATTATTCATAAGCCTGTCA+AGG + chr2_2:17836897-17836916 None:intergenic 30.0%
! TGGAATGTGATGTGTTTTAT+TGG - chr2_2:17837304-17837323 Msa0241830:intron 30.0%
!!! TGTTTTATTGGTGTTGGATT+AGG - chr2_2:17837316-17837335 Msa0241830:intron 30.0%
!!! GTTTTATTGGTGTTGGATTA+GGG - chr2_2:17837317-17837336 Msa0241830:intron 30.0%
ACTCATCTAAATGAGATAAC+AGG + chr2_2:17837565-17837584 None:intergenic 30.0%
CAAACAACTGAAAATTGGAA+AGG + chr2_2:17837625-17837644 None:intergenic 30.0%
TTGCTAAAGTAGAGTTTGAT+AGG - chr2_2:17837703-17837722 Msa0241830:intron 30.0%
TGCTAAAGTAGAGTTTGATA+GGG - chr2_2:17837704-17837723 Msa0241830:intron 30.0%
GAGTTTGATAGGGTAATTAT+TGG - chr2_2:17837714-17837733 Msa0241830:intron 30.0%
!!! AGGGTAATTATTGGTTTTGT+TGG - chr2_2:17837723-17837742 Msa0241830:intron 30.0%
AACCATCTTCTAAATCATTC+AGG - chr2_2:17837846-17837865 Msa0241830:intron 30.0%
TACCTGAATGATTTAGAAGA+TGG + chr2_2:17837851-17837870 None:intergenic 30.0%
TCACAAGATAAAAAAAGAGG+GGG + chr2_2:17837901-17837920 None:intergenic 30.0%
ATAGATGTAGTTTCCTGTAT+TGG - chr2_2:17837960-17837979 Msa0241830:intron 30.0%
AAGTAACAAAAAGATTCCAC+CGG + chr2_2:17837986-17838005 None:intergenic 30.0%
! ACTGCTATTGTTTTCCATTT+GGG + chr2_2:17838087-17838106 None:intergenic 30.0%
! AACTGCTATTGTTTTCCATT+TGG + chr2_2:17838088-17838107 None:intergenic 30.0%
! AGTGATCCATGAAACATTTT+AGG + chr2_2:17838281-17838300 None:intergenic 30.0%
ACTAGGAAATATTAGAAGCA+GGG + chr2_2:17838518-17838537 None:intergenic 30.0%
TACTAGGAAATATTAGAAGC+AGG + chr2_2:17838519-17838538 None:intergenic 30.0%
TTCTGTAGATACTTACTACT+AGG + chr2_2:17838535-17838554 None:intergenic 30.0%
TCACTATTGGAATTGTACAA+TGG + chr2_2:17838565-17838584 None:intergenic 30.0%
AGATATATGTTTAGCCACTT+TGG - chr2_2:17838683-17838702 Msa0241830:CDS 30.0%
ATCATTAAACAGAACCAAAG+TGG + chr2_2:17838700-17838719 None:intergenic 30.0%
CTAATCACATATCTTCTATG+TGG - chr2_2:17838906-17838925 Msa0241830:intron 30.0%
AAGATTCAACCAATAAGACA+CGG + chr2_2:17838942-17838961 None:intergenic 30.0%
ACTAGCATTATATACAAACC+AGG - chr2_2:17839108-17839127 Msa0241830:CDS 30.0%
ATAAGGTGTAAAAATTGCAC+GGG + chr2_2:17839349-17839368 None:intergenic 30.0%
GATAAGGTGTAAAAATTGCA+CGG + chr2_2:17839350-17839369 None:intergenic 30.0%
! GCAATTTTTACACCTTATCA+TGG - chr2_2:17839351-17839370 Msa0241830:CDS 30.0%
! ATTGGTTTCCCATAATCAAT+TGG - chr2_2:17839381-17839400 Msa0241830:CDS 30.0%
TTGGTTTCCCATAATCAATT+GGG - chr2_2:17839382-17839401 Msa0241830:CDS 30.0%
CACATTTACCCAATTGATTA+TGG + chr2_2:17839393-17839412 None:intergenic 30.0%
CAAAATCACATGCTCATTAT+TGG + chr2_2:17839585-17839604 None:intergenic 30.0%
! TGTGGGCTTTTATTGTGAAA+TGG + chr2_2:17835388-17835407 None:intergenic 35.0%
!! AGTGGTGGTGAAATTTTTGT+GGG + chr2_2:17835405-17835424 None:intergenic 35.0%
!! TAGTGGTGGTGAAATTTTTG+TGG + chr2_2:17835406-17835425 None:intergenic 35.0%
!!! GTTTTGATTTGTGATAGTGG+TGG + chr2_2:17835420-17835439 None:intergenic 35.0%
TCTAGATCCAAATCCATCAA+TGG - chr2_2:17835504-17835523 Msa0241830:three_prime_UTR 35.0%
ATAGAGAGCGAGCAATTTAA+CGG + chr2_2:17835734-17835753 None:intergenic 35.0%
TTGAAGTATACTAATGCTGG+TGG - chr2_2:17835969-17835988 Msa0241830:intron 35.0%
GTGGAATACTAGATGATCAT+TGG - chr2_2:17836137-17836156 Msa0241830:intron 35.0%
! TAGATGATCATGGTTCTGTT+TGG + chr2_2:17836977-17836996 None:intergenic 35.0%
TTATTCCTTGACATGTACCT+AGG - chr2_2:17837123-17837142 Msa0241830:intron 35.0%
!!! ATGTTTTGGTTGGTTGAGTT+TGG - chr2_2:17837284-17837303 Msa0241830:intron 35.0%
!! GTGATGTGTTTTATTGGTGT+TGG - chr2_2:17837310-17837329 Msa0241830:intron 35.0%
GATATCTCTCAGACAAATCT+TGG + chr2_2:17837376-17837395 None:intergenic 35.0%
!! TCTACTAGTTTGCTCTTGAA+TGG - chr2_2:17837398-17837417 Msa0241830:intron 35.0%
CTCATTTAGATGAGTGTTTG+TGG - chr2_2:17837570-17837589 Msa0241830:CDS 35.0%
TAAATCATTCAGGTAAGCTC+TGG - chr2_2:17837856-17837875 Msa0241830:intron 35.0%
CATATACAAATATGACCCAC+AGG + chr2_2:17838053-17838072 None:intergenic 35.0%
CTGTGGGTCATATTTGTATA+TGG - chr2_2:17838051-17838070 Msa0241830:intron 35.0%
! CTGCTATTGTTTTCCATTTG+GGG + chr2_2:17838086-17838105 None:intergenic 35.0%
!!! TAGTTTTGTGACCTACTTGA+AGG + chr2_2:17838253-17838272 None:intergenic 35.0%
GTTTCATGGATCACTTATGT+TGG - chr2_2:17838286-17838305 Msa0241830:intron 35.0%
TTGGAAACCAAATTGCATTG+CGG - chr2_2:17838305-17838324 Msa0241830:intron 35.0%
CACACAAATGAATCATGTCT+GGG + chr2_2:17838350-17838369 None:intergenic 35.0%
ACACACAAATGAATCATGTC+TGG + chr2_2:17838351-17838370 None:intergenic 35.0%
AGAATAACGGTACATAACTC+AGG - chr2_2:17838492-17838511 Msa0241830:intron 35.0%
! GTGTCTTATTGGTTGAATCT+TGG - chr2_2:17838941-17838960 Msa0241830:intron 35.0%
GTTCACACACAAATAACATG+TGG + chr2_2:17839012-17839031 None:intergenic 35.0%
TTCATGATTTGAATGGTGTG+TGG - chr2_2:17839319-17839338 Msa0241830:CDS 35.0%
CCAATACAATAGCCATGATA+AGG + chr2_2:17839366-17839385 None:intergenic 35.0%
CCTTATCATGGCTATTGTAT+TGG - chr2_2:17839363-17839382 Msa0241830:CDS 35.0%
CAATTGGGTAAATGTGTTAC+AGG - chr2_2:17839397-17839416 Msa0241830:CDS 35.0%
!! AGGAGCAGAATCGTTGATTT+CGG + chr2_2:17835698-17835717 None:intergenic 40.0%
TTTCTCATCACCCGATTCAA+AGG - chr2_2:17835753-17835772 Msa0241830:CDS 40.0%
CGATCGCGAGTATTAAAGAA+TGG - chr2_2:17835859-17835878 Msa0241830:intron 40.0%
GCATGAACAGGATTTCAATG+AGG - chr2_2:17835944-17835963 Msa0241830:intron 40.0%
GCGTTGAAGTATACTAATGC+TGG - chr2_2:17835966-17835985 Msa0241830:intron 40.0%
ATGATGAGAAGAGGATGTGA+GGG - chr2_2:17836240-17836259 Msa0241830:intron 40.0%
GTTTGGAAGTGATTGGATGT+TGG - chr2_2:17836262-17836281 Msa0241830:intron 40.0%
ATTATGCTGAGAGACAGCTT+AGG - chr2_2:17836344-17836363 Msa0241830:intron 40.0%
TTACTCAGCTTGCAAATGCT+TGG - chr2_2:17836398-17836417 Msa0241830:intron 40.0%
! TGCAAATGCTTGGCTTGATT+TGG - chr2_2:17836408-17836427 Msa0241830:intron 40.0%
GATTGAATGGATCAGCATGT+TGG - chr2_2:17836555-17836574 Msa0241830:intron 40.0%
! GACATAGGGTTTGTTTGGAT+TGG - chr2_2:17836759-17836778 Msa0241830:intron 40.0%
! GATCATGGTTCTGTTTGGAT+TGG + chr2_2:17836972-17836991 None:intergenic 40.0%
GGTCTAGCTAACGTATGTTA+AGG + chr2_2:17837056-17837075 None:intergenic 40.0%
!! TTATTGGTGTTGGATTAGGG+AGG - chr2_2:17837320-17837339 Msa0241830:intron 40.0%
!! TATTGGTGTTGGATTAGGGA+GGG - chr2_2:17837321-17837340 Msa0241830:intron 40.0%
!! TAGTTTGCTCTTGAATGGCA+AGG - chr2_2:17837403-17837422 Msa0241830:intron 40.0%
! TGATGAAGCTGAGACTCTTT+TGG - chr2_2:17837454-17837473 Msa0241830:intron 40.0%
! AAACTCGTTGTGATTTGTGC+AGG - chr2_2:17837766-17837785 Msa0241830:intron 40.0%
ACAAGATTTGCCAGTGTTTC+TGG + chr2_2:17837803-17837822 None:intergenic 40.0%
GTTGTATGCTGTCTTCATCT+TGG - chr2_2:17837821-17837840 Msa0241830:intron 40.0%
! ATGTAGTTTCCTGTATTGGC+CGG - chr2_2:17837964-17837983 Msa0241830:intron 40.0%
ATGGAATTTGTCTCCCCAAA+TGG - chr2_2:17838070-17838089 Msa0241830:intron 40.0%
AAATATGAACCAGACTGTGC+TGG - chr2_2:17838733-17838752 Msa0241830:intron 40.0%
ACCAATAAGACACGGAAGAA+AGG + chr2_2:17838934-17838953 None:intergenic 40.0%
GCATAAACTAAGCATAGTCC+TGG + chr2_2:17839129-17839148 None:intergenic 40.0%
TCTTGACCAGTACATGATCT+GGG + chr2_2:17839228-17839247 None:intergenic 40.0%
! AGATCATGTACTGGTCAAGA+GGG - chr2_2:17839228-17839247 Msa0241830:intron 40.0%
!! GGTGTTGCCATTGATGGATT+TGG + chr2_2:17835514-17835533 None:intergenic 45.0%
!! TGATCTGGTGTTGCCATTGA+TGG + chr2_2:17835520-17835539 None:intergenic 45.0%
TATCGTTGCTACATCGCTCT+TGG - chr2_2:17835652-17835671 Msa0241830:three_prime_UTR 45.0%
TTAACGGCTTGAAGAGACGT+AGG + chr2_2:17835718-17835737 None:intergenic 45.0%
GTAGCATTGTTCCCAATTGC+AGG + chr2_2:17835894-17835913 None:intergenic 45.0%
TTGGGAACAATGCTACGTTG+AGG - chr2_2:17835898-17835917 Msa0241830:intron 45.0%
TACTAATGCTGGTGGAACCA+TGG - chr2_2:17835977-17835996 Msa0241830:intron 45.0%
!!! CTGTTTTTTTACGGTGTCGG+TGG - chr2_2:17836174-17836193 Msa0241830:intron 45.0%
GATGATGAGAAGAGGATGTG+AGG - chr2_2:17836239-17836258 Msa0241830:intron 45.0%
TGTGAGGGTTTGGAAGTGAT+TGG - chr2_2:17836255-17836274 Msa0241830:intron 45.0%
CACTAATATGTGTCGCGACT+CGG - chr2_2:17836579-17836598 Msa0241830:intron 45.0%
AAGTGCCTAGGTACATGTCA+AGG + chr2_2:17837131-17837150 None:intergenic 45.0%
GCAAATGCTAACAAGTGCCT+AGG + chr2_2:17837143-17837162 None:intergenic 45.0%
!! ATTGGTGTTGGATTAGGGAG+GGG - chr2_2:17837322-17837341 Msa0241830:intron 45.0%
! GCTGTTTGCTGCATGCAAAT+GGG - chr2_2:17837425-17837444 Msa0241830:intron 45.0%
! TGAAGCTGAGACTCTTTTGG+TGG - chr2_2:17837457-17837476 Msa0241830:intron 45.0%
!! TTTGGTGGAAGCACTCAACA+AGG - chr2_2:17837472-17837491 Msa0241830:intron 45.0%
! TGTGATTTGTGCAGGATGCT+AGG - chr2_2:17837774-17837793 Msa0241830:intron 45.0%
! GTGATTTGTGCAGGATGCTA+GGG - chr2_2:17837775-17837794 Msa0241830:intron 45.0%
! AAGGACCCAACTCTAGAAGA+GGG + chr2_2:17838234-17838253 None:intergenic 45.0%
TAGAGTTGGGTCCTTCAAGT+AGG - chr2_2:17838239-17838258 Msa0241830:intron 45.0%
CTCAGAACCGCAATGCAATT+TGG + chr2_2:17838315-17838334 None:intergenic 45.0%
GCCTTTCTTCCGTGTCTTAT+TGG - chr2_2:17838930-17838949 Msa0241830:intron 45.0%
TTCACACCCAGATCATGTAC+TGG - chr2_2:17839219-17839238 Msa0241830:intron 45.0%
CTCTTGACCAGTACATGATC+TGG + chr2_2:17839229-17839248 None:intergenic 45.0%
! CAGATCATGTACTGGTCAAG+AGG - chr2_2:17839227-17839246 Msa0241830:intron 45.0%
CAATCTGTTTCGTGAGCTCA+TGG - chr2_2:17839286-17839305 Msa0241830:CDS 45.0%
!!! TTTTATATAAAAAGAAAAAA+AGG - chr2_2:17837200-17837219 Msa0241830:CDS 5.0%
AGTTGTTGCGGAGGTTGAAG+AGG + chr2_2:17835543-17835562 None:intergenic 50.0%
CTCCGCAACAACTTCTACCT+CGG - chr2_2:17835550-17835569 Msa0241830:three_prime_UTR 50.0%
CACCGAGGTAGAAGTTGTTG+CGG + chr2_2:17835555-17835574 None:intergenic 50.0%
TCGCGTTCGATTATGTCGTC+GGG + chr2_2:17835622-17835641 None:intergenic 50.0%
GTCGCGTTCGATTATGTCGT+CGG + chr2_2:17835623-17835642 None:intergenic 50.0%
! TGGCTTGCAGATCCTGCAAT+TGG - chr2_2:17835879-17835898 Msa0241830:intron 50.0%
GGCTTGCAGATCCTGCAATT+GGG - chr2_2:17835880-17835899 Msa0241830:intron 50.0%
!! CTACGTTGAGGCTTGTTGCT+GGG - chr2_2:17835910-17835929 Msa0241830:intron 50.0%
GAGAAGAGGATGTGAGGGTT+TGG - chr2_2:17836245-17836264 Msa0241830:intron 50.0%
!! TGCTTGGCTTGATTTGGCTG+TGG - chr2_2:17836414-17836433 Msa0241830:intron 50.0%
GGAAGATCAAATGCGCCTCT+TGG + chr2_2:17837355-17837374 None:intergenic 50.0%
! GGCTGTTTGCTGCATGCAAA+TGG - chr2_2:17837424-17837443 Msa0241830:intron 50.0%
TGCTAGGGATCCAGAAACAC+TGG - chr2_2:17837790-17837809 Msa0241830:intron 50.0%
! TAGTTTCCTGTATTGGCCGG+TGG - chr2_2:17837967-17837986 Msa0241830:intron 50.0%
AAGATTCCACCGGCCAATAC+AGG + chr2_2:17837976-17837995 None:intergenic 50.0%
!! TCCACACCCTCTTCTAGAGT+TGG - chr2_2:17838225-17838244 Msa0241830:intron 50.0%
!! CCACACCCTCTTCTAGAGTT+GGG - chr2_2:17838226-17838245 Msa0241830:intron 50.0%
! GAAGGACCCAACTCTAGAAG+AGG + chr2_2:17838235-17838254 None:intergenic 50.0%
TGAACCAGACTGTGCTGGAA+AGG - chr2_2:17838738-17838757 Msa0241830:intron 50.0%
TGTTCCTTTCCAGCACAGTC+TGG + chr2_2:17838745-17838764 None:intergenic 50.0%
CTGGGTGTGAAAGTTTCAGC+TGG + chr2_2:17839210-17839229 None:intergenic 50.0%
CGGAGGTTGAAGAGGTGATC+TGG + chr2_2:17835535-17835554 None:intergenic 55.0%
CGAGGTAGAAGTTGTTGCGG+AGG + chr2_2:17835552-17835571 None:intergenic 55.0%
TTGCAGCTTGGTATGCACCG+AGG + chr2_2:17835570-17835589 None:intergenic 55.0%
! CGCTGCTGTTGATTGCAGCT+TGG + chr2_2:17835582-17835601 None:intergenic 55.0%
TATGTCGTCGGGAGAGAGGT+TGG + chr2_2:17835611-17835630 None:intergenic 55.0%
CGATTATGTCGTCGGGAGAG+AGG + chr2_2:17835615-17835634 None:intergenic 55.0%
!! GCTACGTTGAGGCTTGTTGC+TGG - chr2_2:17835909-17835928 Msa0241830:intron 55.0%
! CCCAACTCTAGAAGAGGGTG+TGG + chr2_2:17838229-17838248 None:intergenic 55.0%
GGGAGGGGCGAAGATCCAAG+AGG - chr2_2:17837337-17837356 Msa0241830:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 17835378 17839634 17835378 ID=Msa0241830;Name=Msa0241830
chr2_2 mRNA 17835378 17839634 17835378 ID=Msa0241830-mRNA-1;Parent=Msa0241830;Name=Msa0241830-mRNA-1;_AED=0.02;_eAED=0.02;_QI=145|1|1|1|1|1|6|334|289
chr2_2 exon 17835378 17835805 17835378 ID=Msa0241830-mRNA-1:exon:7277;Parent=Msa0241830-mRNA-1
chr2_2 exon 17837145 17837224 17837145 ID=Msa0241830-mRNA-1:exon:7276;Parent=Msa0241830-mRNA-1
chr2_2 exon 17837519 17837674 17837519 ID=Msa0241830-mRNA-1:exon:7275;Parent=Msa0241830-mRNA-1
chr2_2 exon 17838577 17838712 17838577 ID=Msa0241830-mRNA-1:exon:7274;Parent=Msa0241830-mRNA-1
chr2_2 exon 17839009 17839160 17839009 ID=Msa0241830-mRNA-1:exon:7273;Parent=Msa0241830-mRNA-1
chr2_2 exon 17839238 17839634 17839238 ID=Msa0241830-mRNA-1:exon:7272;Parent=Msa0241830-mRNA-1
chr2_2 five_prime_UTR 17839490 17839634 17839490 ID=Msa0241830-mRNA-1:five_prime_utr;Parent=Msa0241830-mRNA-1
chr2_2 CDS 17839238 17839489 17839238 ID=Msa0241830-mRNA-1:cds;Parent=Msa0241830-mRNA-1
chr2_2 CDS 17839009 17839160 17839009 ID=Msa0241830-mRNA-1:cds;Parent=Msa0241830-mRNA-1
chr2_2 CDS 17838577 17838712 17838577 ID=Msa0241830-mRNA-1:cds;Parent=Msa0241830-mRNA-1
chr2_2 CDS 17837519 17837674 17837519 ID=Msa0241830-mRNA-1:cds;Parent=Msa0241830-mRNA-1
chr2_2 CDS 17837145 17837224 17837145 ID=Msa0241830-mRNA-1:cds;Parent=Msa0241830-mRNA-1
chr2_2 CDS 17835712 17835805 17835712 ID=Msa0241830-mRNA-1:cds;Parent=Msa0241830-mRNA-1
chr2_2 three_prime_UTR 17835378 17835711 17835378 ID=Msa0241830-mRNA-1:three_prime_utr;Parent=Msa0241830-mRNA-1
Gene Sequence

>Msa0241830

ATGGCAACACCAGATCACCTCTTCAACCTCCGCAACAACTTCTACCTCGGTGCATACCAAGCTGCAATCAACAGCAGCGAAGTCTCCAACCTCTCTCCCGACGACATAATCGAACGCGACACTCTCGTTTATCGTTGCTACATCGCTCTTGGTCAGTTACAGTTCGTCATCTCCGAAATCAACGATTCTGCTCCTACGTCTCTTCAAGCCGTTAAATTGCTCGCTCTCTATTTCTCATCACCCGATTCAAAGGAATCTGCGATCGCGAGTATTAAAGAATGGCTTGCAGATCCTGCAATTGGGAACAATGCTACGTTGAGGCTTGTTGCTGGGATTATCTTTTTGCATGAACAGGATTTCAATGAGGCGTTGAAGTATACTAATGCTGGTGGAACCATGGAACTGACTGCGTTGAATGTGCAAATCTTTATTAAGATGCATAGGTCTGATTATGCTGAGAGACAGCTTAGGATTATGCAGCAGATTGATGAAGATCATACTCTTACTCAGCTTGCAAATGCTTGGCTTGATTTGGCTGTGGGAGGGGCGAAGATCCAAGAGGCGCATTTGATCTTCCAAGATTTGTCTGAGAGATATCAGTCTACTAGTTTGCTCTTGAATGGCAAGGCTGTTTGCTGCATGCAAATGGGTAACTTTGATGAAGCTGAGACTCTTTTGGTGGAAGCACTCAACAAGGATGCTAGGGATCCAGAAACACTGGCAAATCTTGTTGTATGCTGTCTTCATCTTGGCAAACCATCTTCTAAATCATTCAGCCAGCTGAAACTTTCACACCCAGATCATGTACTGGTCAAGAGGGTATCAGCAGCTGAAGAAAGCTTTGATAGAGCGCTACAATCTGTTTCGTGA

Protein sequence

>Msa0241830

MATPDHLFNLRNNFYLGAYQAAINSSEVSNLSPDDIIERDTLVYRCYIALGQLQFVISEINDSAPTSLQAVKLLALYFSSPDSKESAIASIKEWLADPAIGNNATLRLVAGIIFLHEQDFNEALKYTNAGGTMELTALNVQIFIKMHRSDYAERQLRIMQQIDEDHTLTQLANAWLDLAVGGAKIQEAHLIFQDLSERYQSTSLLLNGKAVCCMQMGNFDEAETLLVEALNKDARDPETLANLVVCCLHLGKPSSKSFSQLKLSHPDHVLVKRVSAAEESFDRALQSVS*