AlfalfaGEDB | Msa0094470

M. sativa cultivar zhongmu-4 / Msa0094470

KEGG: -
GO: -
PFAM: PF05022.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0094470	XP_003610031.2	94.444	414	19	1	1	414	1	410	0.0	699

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0094470	sp\|P41777\|NOLC1_RAT	51.351	74	35	1	336	409	630	702	4.68e-16	84.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0094470	G7JTA4	94.444	414	19	1	1	414	1	410	0.0	699

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001450	Msa0094470	0.824875	6.367578e-54	-8.615850e-47
Msa0002490	Msa0094470	0.840130	1.046700e-57	-8.615850e-47
Msa0002750	Msa0094470	0.838192	3.328472e-57	-8.615850e-47
Msa0002790	Msa0094470	0.835369	1.746888e-56	-8.615850e-47
Msa0003640	Msa0094470	0.808488	3.021973e-50	-8.615850e-47
Msa0003700	Msa0094470	0.805928	1.053237e-49	-8.615850e-47
Msa0003720	Msa0094470	0.864845	9.068377e-65	-8.615850e-47
Msa0003780	Msa0094470	0.880916	3.699742e-70	-8.615850e-47
Msa0004860	Msa0094470	0.813184	2.910451e-51	-8.615850e-47
Msa0004950	Msa0094470	0.813891	2.034887e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0094470	MtrunA17_Chr4g0071621	94.203	414	19	2	1	414	1	409	0.0	692

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0094470	AT5G57120.2	52.518	139	52	3	283	414	168	299	1.25e-32	125

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Find 96 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATAAAGAATCATCTG+AGG	0.668418	1_2:+77689369	Msa0094470:CDS
AAACGGGCTTTCTGAGAATG+GGG	0.639535	1_2:+77689312	Msa0094470:CDS
AAACGTGGGACCTATAGGGG+TGG	0.658830	1_2:+77691643	Msa0094470:CDS
AAAGATAAGTCAATTAGTGA+AGG	0.516572	1_2:+77689085	Msa0094470:CDS
AACAATAAGTCAAATATTGA+AGG	0.491836	1_2:+77688944	Msa0094470:CDS
AAGAAACGTGGGACCTATAG+GGG	0.566821	1_2:+77691640	Msa0094470:CDS
AAGATAAGTCAATTAGTGAA+GGG	0.507809	1_2:+77689086	Msa0094470:CDS
AAGTAGAATTTGTTGATGAG+AGG	0.558430	1_2:+77691007	Msa0094470:CDS
AATAAGTCAAATATTGAAGG+GGG	0.651885	1_2:+77688947	Msa0094470:CDS
AATAATTAAACTTAACTGAG+TGG	0.520249	1_2:-77691684	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCTTATAGCTAATGTGAAAA+AGG	+	chr1_2:77686671-77686690	Msa0094470:intron	30.0%
TGTGAAAAAGGATATCACTT+TGG	+	chr1_2:77686683-77686702	Msa0094470:intron	30.0%
GGTGACTTTAGTATATTAAG+AGG	+	chr1_2:77686704-77686723	Msa0094470:intron	30.0%
TTATAGGGACTAAAAGTTGA+AGG	-	chr1_2:77687312-77687331	None:intergenic	30.0%
TTATAGGGACTAAAAGTTGA+AGG	+	chr1_2:77687312-77687331	Msa0094470:intron	30.0%
ACATTCGCAATGCAAATATA+TGG	-	chr1_2:77687522-77687541	None:intergenic	30.0%
TCACCGTTCAATAACAAATT+TGG	+	chr1_2:77687717-77687736	Msa0094470:intron	30.0%
ACCATGTTTCCAAATATTTG+CGG	-	chr1_2:77687834-77687853	None:intergenic	30.0%
CAATTACTAGATAGAAAGCT+TGG	+	chr1_2:77688068-77688087	Msa0094470:intron	30.0%
AAATGCTATAGCAAGATCAT+AGG	-	chr1_2:77688334-77688353	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	77686060	77691959	77686060	ID=Msa0094470;Name=Msa0094470
chr1_2	mRNA	77686060	77691959	77686060	ID=Msa0094470-mRNA-1;Parent=Msa0094470;Name=Msa0094470-mRNA-1;_AED=0.01;_eAED=0.01;_QI=76\|1\|1\|1\|1\|1\|7\|239\|414
chr1_2	exon	77686060	77686348	77686060	ID=Msa0094470-mRNA-1:exon:27601;Parent=Msa0094470-mRNA-1
chr1_2	exon	77687787	77687851	77687787	ID=Msa0094470-mRNA-1:exon:27602;Parent=Msa0094470-mRNA-1
chr1_2	exon	77688525	77688568	77688525	ID=Msa0094470-mRNA-1:exon:27603;Parent=Msa0094470-mRNA-1
chr1_2	exon	77688729	77689390	77688729	ID=Msa0094470-mRNA-1:exon:27604;Parent=Msa0094470-mRNA-1
chr1_2	exon	77690964	77691056	77690964	ID=Msa0094470-mRNA-1:exon:27605;Parent=Msa0094470-mRNA-1
chr1_2	exon	77691143	77691204	77691143	ID=Msa0094470-mRNA-1:exon:27606;Parent=Msa0094470-mRNA-1
chr1_2	exon	77691615	77691959	77691615	ID=Msa0094470-mRNA-1:exon:27607;Parent=Msa0094470-mRNA-1
chr1_2	five_prime_UTR	77686060	77686135	77686060	ID=Msa0094470-mRNA-1:five_prime_utr;Parent=Msa0094470-mRNA-1
chr1_2	CDS	77686136	77686348	77686136	ID=Msa0094470-mRNA-1:cds;Parent=Msa0094470-mRNA-1
chr1_2	CDS	77687787	77687851	77687787	ID=Msa0094470-mRNA-1:cds;Parent=Msa0094470-mRNA-1
chr1_2	CDS	77688525	77688568	77688525	ID=Msa0094470-mRNA-1:cds;Parent=Msa0094470-mRNA-1
chr1_2	CDS	77688729	77689390	77688729	ID=Msa0094470-mRNA-1:cds;Parent=Msa0094470-mRNA-1
chr1_2	CDS	77690964	77691056	77690964	ID=Msa0094470-mRNA-1:cds;Parent=Msa0094470-mRNA-1
chr1_2	CDS	77691143	77691204	77691143	ID=Msa0094470-mRNA-1:cds;Parent=Msa0094470-mRNA-1
chr1_2	CDS	77691615	77691720	77691615	ID=Msa0094470-mRNA-1:cds;Parent=Msa0094470-mRNA-1
chr1_2	three_prime_UTR	77691721	77691959	77691721	ID=Msa0094470-mRNA-1:three_prime_utr;Parent=Msa0094470-mRNA-1

Gene Sequence

>Msa0094470

ATGCCTGCAAATCCATCAGGTATCAAAAGAATTCCAACCCTCTTCACTTTCACTCCTCGTCAAGTTTTGTTAAGCAATCGAACCATGAAGAACGGAACCCAAAACTCTGAACAGAAGCAGAAGCTTCTTCTGAACCAATCAATTGCTCTTTACTTGGAACGCTCGGGATTCTCCAAAACCCTCAAAAAGTTTCTCTCTGAAGCTAAAATTGAGAACGATAATACAGAGGGTTCCACAGTGGATCTAGAAGAGATGTGCCGCAAATATTTGGAAACATGTAGCAAGGATGCTAAGTCAACTATCAATGATCAAAAAGCGCAAGGTGTGGACTCCAAAAATGATGAGGAAAAATCCAAGGGAAAAAAGAAAAAGAAAAGCAACGTAGTTTCTGAATCTGTTGTTGATAATGTGGAAGACAACCAATTGGAGTCACCAACTGTGGTTACAGAAAACAAAGTTAAGGATGATTTATCTACAGATGCCAAAGTTGATAATGGTGCTGAGACAGAGAAACGGTCCAAACCCAAAAAGAAAAAGAACAATAAGTCAAATATTGAAGGGGGTGCAATAGAGCAGAATGCAGTTACAGAAAATAAAGTTAAGGATGATTTATCCATAGATGCCAAAGTTGAAAATGGTGCTGAGACAGAGAAGAGGTCCAAACGTAAAATGAAAAAGAAAGATAAGTCAATTAGTGAAGGGGATGCAAAAGAGCAGATTGGAGACCCCGATGCAACAAATGAAGAAGCAACGCCCGAAGAGAAGAAAGATTCTAAAAAAAGAAAGCGACCAATTTCTAAAGAAAATGGTGAACAAGATACCGAAATAAAGGCAGATGAAGAAACCAAACGCAGGAAAATAGAAAATATGAGTGAATCTAAGGGAGGAGACCAATCAGCAAAATCAAACGGGCTTTCTGAGAATGGGGAAGAAAATTCTTCTGTGCAAAAGTCTCAGAAGAAAAAACATAAAGAATCATCTGAGCAAAAACCAGTGAAGGCAGCATTTCAACGCGTACAAGTTGACAAAGTAGAATTTGTTGATGAGAGGCTTCAGGATAACTCATATTGGGCAAAGGATGGCGCCGAGAGTGGTTATGGTGCAAAAGCAGAAGAAATTCTTGGTCAAGTCAGAGGAAGGGATTTTCGCCACGAGAAGACCAAGAAGAAACGTGGGACCTATAGGGGTGGACTTATTGATTTACATTCCCACTCAGTTAAGTTTAATTATTCAGATGAGGAGTGA

Protein sequence

>Msa0094470

MPANPSGIKRIPTLFTFTPRQVLLSNRTMKNGTQNSEQKQKLLLNQSIALYLERSGFSKTLKKFLSEAKIENDNTEGSTVDLEEMCRKYLETCSKDAKSTINDQKAQGVDSKNDEEKSKGKKKKKSNVVSESVVDNVEDNQLESPTVVTENKVKDDLSTDAKVDNGAETEKRSKPKKKKNNKSNIEGGAIEQNAVTENKVKDDLSIDAKVENGAETEKRSKRKMKKKDKSISEGDAKEQIGDPDATNEEATPEEKKDSKKRKRPISKENGEQDTEIKADEETKRRKIENMSESKGGDQSAKSNGLSENGEENSSVQKSQKKKHKESSEQKPVKAAFQRVQVDKVEFVDERLQDNSYWAKDGAESGYGAKAEEILGQVRGRDFRHEKTKKKRGTYRGGLIDLHSHSVKFNYSDEE*