AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0094470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0094470 MtrunA17_Chr4g0071621 94.203 414 19 2 1 414 1 409 0.0 692
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0094470 AT5G57120.2 52.518 139 52 3 283 414 168 299 1.25e-32 125

Find 96 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGCTTCTGTTCAGAGTTT+TGG 0.148789 1_2:-77686234 None:intergenic
TCATCTTCTGTTCACTGGTT+AGG 0.212343 1_2:-77686079 None:intergenic
AGAGATGTGCCGCAAATATT+TGG 0.244302 1_2:+77687822 Msa0094470:CDS
AGAAAATATGAGTGAATCTA+AGG 0.253918 1_2:+77689267 Msa0094470:CDS
ATAGGTCCCACGTTTCTTCT+TGG 0.273117 1_2:-77691635 None:intergenic
TTGATACCTGATGGATTTGC+AGG 0.274555 1_2:-77686139 None:intergenic
TTTAGAATCTTTCTTCTCTT+CGG 0.275506 1_2:-77689161 None:intergenic
CCAATCAATTGCTCTTTACT+TGG 0.280678 1_2:+77686270 Msa0094470:CDS
CGACCAATTTCTAAAGAAAA+TGG 0.291399 1_2:+77689193 Msa0094470:CDS
TTAGAATCTTTCTTCTCTTC+GGG 0.299169 1_2:-77689160 None:intergenic
TTGAAACAATATTGTTCATT+TGG 0.312566 1_2:+77691828 Msa0094470:three_prime_UTR
CATCTTCTGTTCACTGGTTA+GGG 0.312876 1_2:-77686078 None:intergenic
TTCTTCATCTGCCTTTATTT+CGG 0.320467 1_2:-77689227 None:intergenic
GCTTCTTCATTTGTTGCATC+GGG 0.340551 1_2:-77689133 None:intergenic
ATAGATGCCAAAGTTGAAAA+TGG 0.340694 1_2:+77689022 Msa0094470:CDS
TGCTTCTTCATTTGTTGCAT+CGG 0.340775 1_2:-77689134 None:intergenic
ATTTGTTGATGAGAGGCTTC+AGG 0.356972 1_2:+77691014 Msa0094470:CDS
AGAAGAAACGTGGGACCTAT+AGG 0.367724 1_2:+77691638 Msa0094470:CDS
GAAGAAACGTGGGACCTATA+GGG 0.375824 1_2:+77691639 Msa0094470:CDS
CCAAGTAAAGAGCAATTGAT+TGG 0.380181 1_2:-77686270 None:intergenic
GGCTTCAGGATAACTCATAT+TGG 0.387596 1_2:+77691028 Msa0094470:CDS
TGCTCTTTACTTGGAACGCT+CGG 0.400334 1_2:+77686279 Msa0094470:CDS
CCACAGTTGGTGACTCCAAT+TGG 0.405640 1_2:-77688826 None:intergenic
GATGGCGCCGAGAGTGGTTA+TGG 0.413963 1_2:+77691143 Msa0094470:CDS
CGTTGAAATGCTGCCTTCAC+TGG 0.414815 1_2:-77690970 None:intergenic
CTCAGCACCATTATCAACTT+TGG 0.421101 1_2:-77688888 None:intergenic
TGAACAAGATACCGAAATAA+AGG 0.423978 1_2:+77689216 Msa0094470:CDS
ACAGATGCCAAAGTTGATAA+TGG 0.427492 1_2:+77688881 Msa0094470:CDS
AGAAGATGAATTAGAGTGGT+TGG 0.430448 1_2:+77686093 Msa0094470:five_prime_UTR
CTAATTCATCTTCTGTTCAC+TGG 0.437183 1_2:-77686084 None:intergenic
CAAACGGGCTTTCTGAGAAT+GGG 0.440258 1_2:+77689311 Msa0094470:CDS
GCAAAAGCAGAAGAAATTCT+TGG 0.442256 1_2:+77691167 Msa0094470:CDS
TCAAACGGGCTTTCTGAGAA+TGG 0.443793 1_2:+77689310 Msa0094470:CDS
GACCAATCAGCAAAATCAAA+CGG 0.445985 1_2:+77689295 Msa0094470:CDS
ACCATGTTTCCAAATATTTG+CGG 0.446237 1_2:-77687831 None:intergenic
GCTTCAGGATAACTCATATT+GGG 0.455100 1_2:+77691029 Msa0094470:CDS
ATCAATAAGTCCACCCCTAT+AGG 0.468521 1_2:-77691653 None:intergenic
GGATTTGCAGGCATACGAAA+AGG 0.471205 1_2:-77686127 None:intergenic
TTATTCAGATGAGGAGTGAC+TGG 0.475043 1_2:+77691702 Msa0094470:exon
GGAGTGAAAGTGAAGAGGGT+TGG 0.475645 1_2:-77686169 None:intergenic
CGTATGCCTGCAAATCCATC+AGG 0.484539 1_2:+77686133 Msa0094470:exon
AACAATAAGTCAAATATTGA+AGG 0.491836 1_2:+77688944 Msa0094470:CDS
TTCATCTCTCTTCAGTAGCA+AGG 0.496685 1_2:+77688510 Msa0094470:intron
ACCAATCAGCAAAATCAAAC+GGG 0.497516 1_2:+77689296 Msa0094470:CDS
AGTTACAGAAAATAAAGTTA+AGG 0.498586 1_2:+77688988 Msa0094470:CDS
GAAGATGAATTAGAGTGGTT+GGG 0.506631 1_2:+77686094 Msa0094470:five_prime_UTR
AAGATAAGTCAATTAGTGAA+GGG 0.507809 1_2:+77689086 Msa0094470:CDS
TAATGTGGAAGACAACCAAT+TGG 0.510929 1_2:+77688811 Msa0094470:CDS
AAAGATAAGTCAATTAGTGA+AGG 0.516572 1_2:+77689085 Msa0094470:CDS
CTGCAGGATGGCGCCGAGAG+TGG 0.518486 1_2:+77691137 Msa0094470:intron
AATAATTAAACTTAACTGAG+TGG 0.520249 1_2:-77691684 None:intergenic
GCTCTTTACTTGGAACGCTC+GGG 0.525363 1_2:+77686280 Msa0094470:CDS
GATGAATTAGAGTGGTTGGG+TGG 0.531287 1_2:+77686097 Msa0094470:five_prime_UTR
GGGGATGCAAAAGAGCAGAT+TGG 0.539281 1_2:+77689106 Msa0094470:CDS
GGTTACAGAAAACAAAGTTA+AGG 0.544978 1_2:+77688847 Msa0094470:CDS
ACAATAAGTCAAATATTGAA+GGG 0.546642 1_2:+77688945 Msa0094470:CDS
GAAATTCTTGGTCAAGTCAG+AGG 0.547509 1_2:+77691179 Msa0094470:CDS
GCCGCAAATATTTGGAAACA+TGG 0.552046 1_2:+77687830 Msa0094470:CDS
TAAGTTTAATTATTCAGATG+AGG 0.552944 1_2:+77691693 Msa0094470:CDS
AAGTAGAATTTGTTGATGAG+AGG 0.558430 1_2:+77691007 Msa0094470:CDS
ATAATTAAACTTAACTGAGT+GGG 0.560601 1_2:-77691683 None:intergenic
GATTTGCAGGCATACGAAAA+GGG 0.561553 1_2:-77686126 None:intergenic
AGATAAGTCAATTAGTGAAG+GGG 0.564373 1_2:+77689087 Msa0094470:CDS
AAGAAACGTGGGACCTATAG+GGG 0.566821 1_2:+77691640 Msa0094470:CDS
TGATAACACCGGCTTTAGCA+TGG 0.570584 1_2:-77691782 None:intergenic
CTTGAGCACCATGCTAAAGC+CGG 0.571283 1_2:+77691774 Msa0094470:three_prime_UTR
TCTCTCTGAAGCTAAAATTG+AGG 0.572494 1_2:+77686327 Msa0094470:CDS
TGAATCTGTTGTTGATAATG+TGG 0.576162 1_2:+77688796 Msa0094470:CDS
GAAAATATGAGTGAATCTAA+GGG 0.576840 1_2:+77689268 Msa0094470:CDS
GTTTCTTCTTGGTCTTCTCG+TGG 0.577810 1_2:-77691624 None:intergenic
GACGAGGAGTGAAAGTGAAG+AGG 0.595704 1_2:-77686174 None:intergenic
ACGAGGAGTGAAAGTGAAGA+GGG 0.599283 1_2:-77686173 None:intergenic
CTTCTTCATTTGTTGCATCG+GGG 0.605174 1_2:-77689132 None:intergenic
GGATAACTCATATTGGGCAA+AGG 0.615077 1_2:+77691035 Msa0094470:CDS
AATATGAGTGAATCTAAGGG+AGG 0.616915 1_2:+77689271 Msa0094470:CDS
TTCTTGGTCAAGTCAGAGGA+AGG 0.619626 1_2:+77691183 Msa0094470:CDS
CAATAAGTCAAATATTGAAG+GGG 0.625288 1_2:+77688946 Msa0094470:CDS
AGCAATCGAACCATGAAGAA+CGG 0.631910 1_2:+77686208 Msa0094470:CDS
CAGATGAAGAAACCAAACGC+AGG 0.637321 1_2:+77689239 Msa0094470:CDS
AAACGGGCTTTCTGAGAATG+GGG 0.639535 1_2:+77689312 Msa0094470:CDS
GAGAAGACCAAGAAGAAACG+TGG 0.639718 1_2:+77691628 Msa0094470:CDS
TATTCAGATGAGGAGTGACT+GGG 0.640238 1_2:+77691703 Msa0094470:exon
ATGGTGCTGAGACAGAGAAA+CGG 0.644173 1_2:+77688900 Msa0094470:CDS
ATGCAGAACGATAATACAGA+GGG 0.648262 1_2:+77687781 Msa0094470:intron
CCAATTGGAGTCACCAACTG+TGG 0.648790 1_2:+77688826 Msa0094470:CDS
AATAAGTCAAATATTGAAGG+GGG 0.651885 1_2:+77688947 Msa0094470:CDS
GAACAGAAGATGAATTAGAG+TGG 0.654246 1_2:+77686089 Msa0094470:five_prime_UTR
AGAAGACCAAGAAGAAACGT+GGG 0.657801 1_2:+77691629 Msa0094470:CDS
AAACGTGGGACCTATAGGGG+TGG 0.658830 1_2:+77691643 Msa0094470:CDS
ATGGTGCTGAGACAGAGAAG+AGG 0.660400 1_2:+77689041 Msa0094470:CDS
AAAACATAAAGAATCATCTG+AGG 0.668418 1_2:+77689369 Msa0094470:CDS
TTGCTTAACAAAACTTGACG+AGG 0.675556 1_2:-77686190 None:intergenic
TCAGATGAGGAGTGACTGGG+AGG 0.685329 1_2:+77691706 Msa0094470:exon
GATGCAGAACGATAATACAG+AGG 0.716767 1_2:+77687780 Msa0094470:intron
TAATACAGAGGGTTCCACAG+TGG 0.729759 1_2:+77687792 Msa0094470:CDS
CATCTCTTCTAGATCCACTG+TGG 0.742631 1_2:-77687806 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAATTCTGAATTTTTTT+TGG + chr1_2:77687181-77687200 Msa0094470:intron 10.0%
!!! TATAATATTTTGAATTTTTC+TGG + chr1_2:77687213-77687232 Msa0094470:intron 10.0%
!!! GAATTATTTATTTTTTCTAA+GGG + chr1_2:77688616-77688635 Msa0094470:intron 10.0%
!! TTTAATTGAAAATAAAAAGA+GGG - chr1_2:77689558-77689577 None:intergenic 10.0%
!!! TTTTAATTGAAAATAAAAAG+AGG - chr1_2:77689559-77689578 None:intergenic 10.0%
!! TTTATTTATTATTTCATTCT+TGG + chr1_2:77690816-77690835 Msa0094470:intron 10.0%
!! ACATTATAAAACAATTATAT+TGG - chr1_2:77691520-77691539 None:intergenic 10.0%
!! TAAAAGTTGACATATTTATA+GGG - chr1_2:77686924-77686943 None:intergenic 15.0%
!!! TAGTGATTGAAAATTTTATA+GGG - chr1_2:77686984-77687003 None:intergenic 15.0%
!!! TGAAGATTGAAAATTTTATA+GGG + chr1_2:77687297-77687316 Msa0094470:intron 15.0%
!!! CGAATTATTTATTTTTTCTA+AGG + chr1_2:77688615-77688634 Msa0094470:intron 15.0%
!!! TTATTGTTCTTTTTCTTTTT+GGG - chr1_2:77688932-77688951 None:intergenic 15.0%
!! TTAATTGAAAATAAAAAGAG+GGG - chr1_2:77689557-77689576 None:intergenic 15.0%
!!! GAAAATTAAATTTTATACGA+GGG - chr1_2:77689648-77689667 None:intergenic 15.0%
!!! TGAAAATTAAATTTTATACG+AGG - chr1_2:77689649-77689668 None:intergenic 15.0%
!! TACTTAAACTTAATTTAAGT+AGG + chr1_2:77690020-77690039 Msa0094470:intron 15.0%
!! AACTTAAATTCAGTTTAAAT+AGG - chr1_2:77690249-77690268 None:intergenic 15.0%
!! TTTAAGAGAATTTATACAAA+AGG + chr1_2:77690492-77690511 Msa0094470:intron 15.0%
!! TTAAGAGAATTTATACAAAA+GGG + chr1_2:77690493-77690512 Msa0094470:intron 15.0%
!!! AGTCAACTATTTAATTTAAA+GGG - chr1_2:77690698-77690717 None:intergenic 15.0%
!!! TAGTCAACTATTTAATTTAA+AGG - chr1_2:77690699-77690718 None:intergenic 15.0%
!! AGATAAACATATAAAGAAAT+TGG - chr1_2:77690725-77690744 None:intergenic 15.0%
!!! ATTTTTAGTCATATGTATTT+AGG + chr1_2:77690872-77690891 Msa0094470:intron 15.0%
!!! ATCAAAATTTTGTTACATTA+TGG + chr1_2:77691801-77691820 Msa0094470:three_prime_UTR 15.0%
!!! TATAATTGTAATGTTGCTTT+TGG + chr1_2:77686426-77686445 Msa0094470:intron 20.0%
!! AGAGTTTCTTAAAAATTCAT+GGG + chr1_2:77686881-77686900 Msa0094470:intron 20.0%
!! CTAAAAGTTGACATATTTAT+AGG - chr1_2:77686925-77686944 None:intergenic 20.0%
!!! AATATGTCAACTTTTAGTTT+TGG + chr1_2:77686928-77686947 Msa0094470:intron 20.0%
!!! GTAGTGATTGAAAATTTTAT+AGG - chr1_2:77686985-77687004 None:intergenic 20.0%
!!! AAATTTTCAATCACTACTTT+TGG + chr1_2:77686988-77687007 Msa0094470:intron 20.0%
!!! ATATGAGTTTACTTTAAAAG+AGG + chr1_2:77687265-77687284 Msa0094470:intron 20.0%
!!! TATGAGTTTACTTTAAAAGA+GGG + chr1_2:77687266-77687285 Msa0094470:intron 20.0%
!!! AAATTTTCAATCTTCACTTT+TGG - chr1_2:77687293-77687312 None:intergenic 20.0%
!!! GTGAAGATTGAAAATTTTAT+AGG + chr1_2:77687296-77687315 Msa0094470:intron 20.0%
!! GAAAAGTTGACATATTTATA+GGG + chr1_2:77687357-77687376 Msa0094470:intron 20.0%
!!! TTTTGGGTTAAATATGTTTT+TGG - chr1_2:77687384-77687403 None:intergenic 20.0%
!! TTTCTATCTAGTAATTGATA+TGG - chr1_2:77688065-77688084 None:intergenic 20.0%
!!! ACAGTATGAAAATTTTATAG+CGG - chr1_2:77688145-77688164 None:intergenic 20.0%
!!! TTGCTTAAAACAATTTTCTA+TGG + chr1_2:77688194-77688213 Msa0094470:intron 20.0%
!!! TTTTACAGCATTTTATAGTA+TGG + chr1_2:77688260-77688279 Msa0094470:intron 20.0%
!!! CTTATTGTTCTTTTTCTTTT+TGG - chr1_2:77688933-77688952 None:intergenic 20.0%
!! AACAATAAGTCAAATATTGA+AGG + chr1_2:77688944-77688963 Msa0094470:CDS 20.0%
!! ACAATAAGTCAAATATTGAA+GGG + chr1_2:77688945-77688964 Msa0094470:CDS 20.0%
!! AGTTACAGAAAATAAAGTTA+AGG + chr1_2:77688988-77689007 Msa0094470:CDS 20.0%
!!! TTTCTTTTTCATTTTACGTT+TGG - chr1_2:77689068-77689087 None:intergenic 20.0%
!! AAAGAATACGTATAAAAAGA+GGG - chr1_2:77689530-77689549 None:intergenic 20.0%
!! TAAAGAATACGTATAAAAAG+AGG - chr1_2:77689531-77689550 None:intergenic 20.0%
!!! ATTTGTGTTTTTCTTGTTTA+TGG + chr1_2:77689858-77689877 Msa0094470:intron 20.0%
!! TGAAACTATCATTATTGAAA+AGG + chr1_2:77690326-77690345 Msa0094470:intron 20.0%
!!! TTTATACAAAAGGGTAATTT+TGG + chr1_2:77690502-77690521 Msa0094470:intron 20.0%
!!! TTGTATTTCTTATACAGTTT+TGG + chr1_2:77690849-77690868 Msa0094470:intron 20.0%
!! ATTATCTAAGAAATGTGTAT+GGG + chr1_2:77691105-77691124 Msa0094470:intron 20.0%
!! GAAATAAAATTGTTTCACTA+CGG - chr1_2:77691224-77691243 None:intergenic 20.0%
!! TTTAATACAAGTGCAAATAT+TGG - chr1_2:77691246-77691265 None:intergenic 20.0%
!!! ACCATCTTATTTTACTTTTT+TGG + chr1_2:77691568-77691587 Msa0094470:intron 20.0%
!! ACCAAAAAAGTAAAATAAGA+TGG - chr1_2:77691572-77691591 None:intergenic 20.0%
!! ATAATTAAACTTAACTGAGT+GGG - chr1_2:77691686-77691705 None:intergenic 20.0%
!! AATAATTAAACTTAACTGAG+TGG - chr1_2:77691687-77691706 None:intergenic 20.0%
!! TAAGTTTAATTATTCAGATG+AGG + chr1_2:77691693-77691712 Msa0094470:CDS 20.0%
!!! TAACAAAATTTTGATAACAC+CGG - chr1_2:77691796-77691815 None:intergenic 20.0%
!! TTGAAACAATATTGTTCATT+TGG + chr1_2:77691828-77691847 Msa0094470:three_prime_UTR 20.0%
!!! TTTTTCATTGTTTTTCTGCT+AGG + chr1_2:77686455-77686474 Msa0094470:intron 25.0%
! ACTTTAGTATATTAAGAGGA+TGG + chr1_2:77686708-77686727 Msa0094470:intron 25.0%
! CTTCATTCATGAAAAAAGTT+CGG + chr1_2:77686810-77686829 Msa0094470:intron 25.0%
! CAGAGTTTCTTAAAAATTCA+TGG + chr1_2:77686880-77686899 Msa0094470:intron 25.0%
!!! TCATGGGTTAAATATGTTTT+TGG + chr1_2:77686897-77686916 Msa0094470:intron 25.0%
!! AGTTGAAGGAAAATTTTAGA+GGG - chr1_2:77687326-77687345 None:intergenic 25.0%
!! AAGTTGAAGGAAAATTTTAG+AGG - chr1_2:77687325-77687344 None:intergenic 25.0%
!! AAGTTGAAGGAAAATTTTAG+AGG + chr1_2:77687325-77687344 Msa0094470:intron 25.0%
!! AGTTGAAGGAAAATTTTAGA+GGG + chr1_2:77687326-77687345 Msa0094470:intron 25.0%
! CGAAAAGTTGACATATTTAT+AGG + chr1_2:77687356-77687375 Msa0094470:intron 25.0%
! ATTTAACCCAAAATTCATTG+CGG + chr1_2:77687391-77687410 Msa0094470:intron 25.0%
! TAAGTAATTATGTGCATACA+TGG + chr1_2:77687619-77687638 Msa0094470:intron 25.0%
! TGTACTGTGTAGTTTATAAT+CGG - chr1_2:77687908-77687927 None:intergenic 25.0%
!! TAATTGATATGGTTGATACA+TGG - chr1_2:77688054-77688073 None:intergenic 25.0%
!! GCTATAAAATTTTCATACTG+TGG + chr1_2:77688144-77688163 Msa0094470:intron 25.0%
!! ATATTGGCAATTTTATGTAG+CGG + chr1_2:77688168-77688187 Msa0094470:intron 25.0%
!! CTTAAAACAATTTTCTATGG+CGG + chr1_2:77688197-77688216 Msa0094470:intron 25.0%
! AATCTGATATTGAGAACTAT+GGG + chr1_2:77688378-77688397 Msa0094470:intron 25.0%
! ACAGAAATGACAATACTAAT+TGG - chr1_2:77688453-77688472 None:intergenic 25.0%
! ATGTTATAAACAAGAGAGAT+AGG - chr1_2:77688595-77688614 None:intergenic 25.0%
!! TTTCTTTTTCTTTTTTCCCT+TGG - chr1_2:77688762-77688781 None:intergenic 25.0%
! CAATAAGTCAAATATTGAAG+GGG + chr1_2:77688946-77688965 Msa0094470:CDS 25.0%
! AATAAGTCAAATATTGAAGG+GGG + chr1_2:77688947-77688966 Msa0094470:CDS 25.0%
! AAAGATAAGTCAATTAGTGA+AGG + chr1_2:77689085-77689104 Msa0094470:CDS 25.0%
! AAGATAAGTCAATTAGTGAA+GGG + chr1_2:77689086-77689105 Msa0094470:CDS 25.0%
!! TTTAGAATCTTTCTTCTCTT+CGG - chr1_2:77689164-77689183 None:intergenic 25.0%
!!! TCACCATTTTCTTTAGAAAT+TGG - chr1_2:77689199-77689218 None:intergenic 25.0%
! AGAAAATATGAGTGAATCTA+AGG + chr1_2:77689267-77689286 Msa0094470:CDS 25.0%
! GAAAATATGAGTGAATCTAA+GGG + chr1_2:77689268-77689287 Msa0094470:CDS 25.0%
! AAAACATAAAGAATCATCTG+AGG + chr1_2:77689369-77689388 Msa0094470:CDS 25.0%
! AAGAATACGTATAAAAAGAG+GGG - chr1_2:77689529-77689548 None:intergenic 25.0%
! AAGAAATTTCGAAGCAAAAA+AGG + chr1_2:77689762-77689781 Msa0094470:intron 25.0%
! CATGTAAACTTAGTTTAAGT+AGG + chr1_2:77689971-77689990 Msa0094470:intron 25.0%
! CATGTAAACTTAGTTTAAGT+AGG + chr1_2:77689971-77689990 Msa0094470:intron 25.0%
! TTACATAGAATCATTGAACA+AGG - chr1_2:77690109-77690128 None:intergenic 25.0%
! ATTCTATGTAATCTCAGTTT+AGG + chr1_2:77690118-77690137 Msa0094470:intron 25.0%
! CTACTTAAACTAAGTTTACA+TGG - chr1_2:77689973-77689992 None:intergenic 25.0%
! CATGTAAACTTAGTTTAAGT+AGG + chr1_2:77689971-77689990 Msa0094470:intron 25.0%
! TATTCAAGAATTTATAGCAC+AGG - chr1_2:77690628-77690647 None:intergenic 25.0%
! TAAAACTTACCTAACATTTC+AGG + chr1_2:77690653-77690672 Msa0094470:intron 25.0%
! AACATAAATCTTAGTTTCAG+TGG - chr1_2:77690910-77690929 None:intergenic 25.0%
! ACTGAAACTAAGATTTATGT+TGG + chr1_2:77690909-77690928 Msa0094470:intron 25.0%
! ATTTCTTAGATAATGCAACT+GGG - chr1_2:77691099-77691118 None:intergenic 25.0%
! CATTATCTAAGAAATGTGTA+TGG + chr1_2:77691104-77691123 Msa0094470:intron 25.0%
! TTCATAGACAAGCTATAAAT+AGG + chr1_2:77691328-77691347 Msa0094470:intron 25.0%
!! TCTATGGAAAATTTGTTTGA+TGG + chr1_2:77691395-77691414 Msa0094470:intron 25.0%
!! CTATGGAAAATTTGTTTGAT+GGG + chr1_2:77691396-77691415 Msa0094470:intron 25.0%
! GATATATGTGTGAAAAATCT+GGG - chr1_2:77691447-77691466 None:intergenic 25.0%
!! CAGATTTTTCACACATATAT+CGG + chr1_2:77691446-77691465 Msa0094470:intron 25.0%
! GGTTTAGAAAAATGAATGAA+AGG - chr1_2:77691474-77691493 None:intergenic 25.0%
! AGCTGAATAAGACAATAAAA+GGG - chr1_2:77691495-77691514 None:intergenic 25.0%
! TAGCTGAATAAGACAATAAA+AGG - chr1_2:77691496-77691515 None:intergenic 25.0%
!!! TGTTTTGATTGCATATCAAA+TGG + chr1_2:77691934-77691953 Msa0094470:three_prime_UTR 25.0%
!!! ACTGGTTAGGGTTTATTTTA+GGG - chr1_2:77686069-77686088 None:intergenic 30.0%
! TTCAGAGAGAAACTTTTTGA+GGG - chr1_2:77686317-77686336 None:intergenic 30.0%
!! AGAAGCATCTTGATTGAATT+TGG + chr1_2:77686499-77686518 Msa0094470:intron 30.0%
! GAAGCATCTTGATTGAATTT+GGG + chr1_2:77686500-77686519 Msa0094470:intron 30.0%
GCTTATAGCTAATGTGAAAA+AGG + chr1_2:77686671-77686690 Msa0094470:intron 30.0%
TGTGAAAAAGGATATCACTT+TGG + chr1_2:77686683-77686702 Msa0094470:intron 30.0%
GGTGACTTTAGTATATTAAG+AGG + chr1_2:77686704-77686723 Msa0094470:intron 30.0%
TTATAGGGACTAAAAGTTGA+AGG - chr1_2:77687312-77687331 None:intergenic 30.0%
TTATAGGGACTAAAAGTTGA+AGG + chr1_2:77687312-77687331 Msa0094470:intron 30.0%
ACATTCGCAATGCAAATATA+TGG - chr1_2:77687522-77687541 None:intergenic 30.0%
! AGAATCTGTTTTACTCAGTT+TGG - chr1_2:77687585-77687604 None:intergenic 30.0%
TCACCGTTCAATAACAAATT+TGG + chr1_2:77687717-77687736 Msa0094470:intron 30.0%
!! CAGCCAAATTTGTTATTGAA+CGG - chr1_2:77687723-77687742 None:intergenic 30.0%
ACCATGTTTCCAAATATTTG+CGG - chr1_2:77687834-77687853 None:intergenic 30.0%
! AATCTTGAAAGTGTAGAACA+AGG - chr1_2:77687872-77687891 None:intergenic 30.0%
! GTTCTACACTTTCAAGATTT+TGG + chr1_2:77687873-77687892 Msa0094470:intron 30.0%
CAATTACTAGATAGAAAGCT+TGG + chr1_2:77688068-77688087 Msa0094470:intron 30.0%
! ATTTTCATACTGTGGCATAT+TGG + chr1_2:77688152-77688171 Msa0094470:intron 30.0%
AAATGCTATAGCAAGATCAT+AGG - chr1_2:77688334-77688353 None:intergenic 30.0%
CAATCTGATATTGAGAACTA+TGG + chr1_2:77688377-77688396 Msa0094470:intron 30.0%
AATGACAATACTAATTGGTG+TGG - chr1_2:77688448-77688467 None:intergenic 30.0%
TTTCAATTACTGCTAATTGC+AGG + chr1_2:77688707-77688726 Msa0094470:intron 30.0%
! GGATTTTTCCTCATCATTTT+TGG - chr1_2:77688741-77688760 None:intergenic 30.0%
AAATGATGAGGAAAAATCCA+AGG + chr1_2:77688742-77688761 Msa0094470:CDS 30.0%
AATGATGAGGAAAAATCCAA+GGG + chr1_2:77688743-77688762 Msa0094470:CDS 30.0%
!! TGAATCTGTTGTTGATAATG+TGG + chr1_2:77688796-77688815 Msa0094470:CDS 30.0%
GGTTACAGAAAACAAAGTTA+AGG + chr1_2:77688847-77688866 Msa0094470:CDS 30.0%
!!! GTTCTTTTTCTTTTTGGGTT+TGG - chr1_2:77688927-77688946 None:intergenic 30.0%
! ATTTTCAACTTTGGCATCTA+TGG - chr1_2:77689023-77689042 None:intergenic 30.0%
ATAGATGCCAAAGTTGAAAA+TGG + chr1_2:77689022-77689041 Msa0094470:CDS 30.0%
AGATAAGTCAATTAGTGAAG+GGG + chr1_2:77689087-77689106 Msa0094470:CDS 30.0%
TTAGAATCTTTCTTCTCTTC+GGG - chr1_2:77689163-77689182 None:intergenic 30.0%
! CGACCAATTTCTAAAGAAAA+TGG + chr1_2:77689193-77689212 Msa0094470:CDS 30.0%
TGAACAAGATACCGAAATAA+AGG + chr1_2:77689216-77689235 Msa0094470:CDS 30.0%
! TTCTTCATCTGCCTTTATTT+CGG - chr1_2:77689230-77689249 None:intergenic 30.0%
! ATTTTCTATTTTCCTGCGTT+TGG - chr1_2:77689254-77689273 None:intergenic 30.0%
ATTCTCTCTGAATATGTACA+TGG + chr1_2:77689411-77689430 Msa0094470:intron 30.0%
AATTACACCCTTTATAATCC+TGG + chr1_2:77689598-77689617 Msa0094470:intron 30.0%
! AAGACGGAAGATAGATTTTT+GGG - chr1_2:77689701-77689720 None:intergenic 30.0%
! AAAGACGGAAGATAGATTTT+TGG - chr1_2:77689702-77689721 None:intergenic 30.0%
!! CTTTGAAATCTTGCATAGAA+GGG - chr1_2:77689745-77689764 None:intergenic 30.0%
!! TCTTTGAAATCTTGCATAGA+AGG - chr1_2:77689746-77689765 None:intergenic 30.0%
AATTTCGAAGCAAAAAAGGT+TGG + chr1_2:77689766-77689785 Msa0094470:intron 30.0%
ATCGATTATGTTCTTGTCAT+GGG + chr1_2:77689805-77689824 Msa0094470:intron 30.0%
!! TCCTAATTCTAAGCTTTTTC+TGG + chr1_2:77689830-77689849 Msa0094470:intron 30.0%
!! CCTAATTCTAAGCTTTTTCT+GGG + chr1_2:77689831-77689850 Msa0094470:intron 30.0%
AGGTATGTACATGTAAACTT+AGG + chr1_2:77690138-77690157 Msa0094470:intron 30.0%
TGATGTTCAATCAATCTATG+TGG - chr1_2:77690418-77690437 None:intergenic 30.0%
ACATAGATTGATTGAACATC+AGG + chr1_2:77690417-77690436 Msa0094470:intron 30.0%
AGTGACTATGAATGAAATCA+AGG + chr1_2:77690468-77690487 Msa0094470:intron 30.0%
ACACAATAACCTGAAATGTT+AGG - chr1_2:77690665-77690684 None:intergenic 30.0%
!! AAGTAGAATTTGTTGATGAG+AGG + chr1_2:77691007-77691026 Msa0094470:CDS 30.0%
! TGATATGTTTTCCATGCATT+TGG + chr1_2:77691068-77691087 Msa0094470:intron 30.0%
CATTTCTTAGATAATGCAAC+TGG - chr1_2:77691100-77691119 None:intergenic 30.0%
! TTTGTCTAGTGAGTTTTCTA+TGG + chr1_2:77691379-77691398 Msa0094470:intron 30.0%
CGATATATGTGTGAAAAATC+TGG - chr1_2:77691448-77691467 None:intergenic 30.0%
ACACCAAATATTTCTCTTAC+AGG + chr1_2:77691593-77691612 Msa0094470:intron 30.0%
CACCAAATATTTCTCTTACA+GGG + chr1_2:77691594-77691613 Msa0094470:intron 30.0%
ATCCCTGTAAGAGAAATATT+TGG - chr1_2:77691599-77691618 None:intergenic 30.0%
! CAAAATTTTGCTACATTACG+AGG + chr1_2:77691901-77691920 Msa0094470:three_prime_UTR 30.0%
!! CACTGGTTAGGGTTTATTTT+AGG - chr1_2:77686070-77686089 None:intergenic 35.0%
CTAATTCATCTTCTGTTCAC+TGG - chr1_2:77686087-77686106 None:intergenic 35.0%
GAACAGAAGATGAATTAGAG+TGG + chr1_2:77686089-77686108 Msa0094470:five_prime_UTR 35.0%
AGAAGATGAATTAGAGTGGT+TGG + chr1_2:77686093-77686112 Msa0094470:five_prime_UTR 35.0%
GAAGATGAATTAGAGTGGTT+GGG + chr1_2:77686094-77686113 Msa0094470:five_prime_UTR 35.0%
! GGAATTCTTTTGATACCTGA+TGG - chr1_2:77686151-77686170 None:intergenic 35.0%
TTGCTTAACAAAACTTGACG+AGG - chr1_2:77686193-77686212 None:intergenic 35.0%
CCAAGTAAAGAGCAATTGAT+TGG - chr1_2:77686273-77686292 None:intergenic 35.0%
CCAATCAATTGCTCTTTACT+TGG + chr1_2:77686270-77686289 Msa0094470:CDS 35.0%
!! GAGAAACTTTTTGAGGGTTT+TGG - chr1_2:77686311-77686330 None:intergenic 35.0%
! CTTCAGAGAGAAACTTTTTG+AGG - chr1_2:77686318-77686337 None:intergenic 35.0%
!! TCTCTCTGAAGCTAAAATTG+AGG + chr1_2:77686327-77686346 Msa0094470:CDS 35.0%
! TCTGAAGCTAAAATTGAGGT+GGG + chr1_2:77686331-77686350 Msa0094470:intron 35.0%
TCACTTTCCATTCATTCGTT+TGG + chr1_2:77686354-77686373 Msa0094470:intron 35.0%
! GATTGAATTTGGGATCTGTT+TGG + chr1_2:77686510-77686529 Msa0094470:intron 35.0%
! AATTTGGGATCTGTTTGGAT+TGG + chr1_2:77686515-77686534 Msa0094470:intron 35.0%
AATAAGCTGAAAGCAGCTTA+TGG - chr1_2:77686618-77686637 None:intergenic 35.0%
GCTGTTTACATGAGCTATTT+CGG - chr1_2:77686653-77686672 None:intergenic 35.0%
TGCGAATGTCATCTAAATTG+AGG + chr1_2:77687533-77687552 Msa0094470:intron 35.0%
TTATGTGCATACATGGCAAA+AGG + chr1_2:77687626-77687645 Msa0094470:intron 35.0%
TATGGAATACAGAGGAATTC+TGG - chr1_2:77687682-77687701 None:intergenic 35.0%
!! TTTGTTATTGAACGGTGAGA+AGG - chr1_2:77687715-77687734 None:intergenic 35.0%
CGTTCAATAACAAATTTGGC+TGG + chr1_2:77687721-77687740 Msa0094470:intron 35.0%
TATCGTTCTGCATCAACAAA+AGG - chr1_2:77687774-77687793 None:intergenic 35.0%
ATGCAGAACGATAATACAGA+GGG + chr1_2:77687781-77687800 Msa0094470:intron 35.0%
AGTGTACAGTTTACAGGATT+AGG - chr1_2:77687936-77687955 None:intergenic 35.0%
! TAAGAACAGTTTTGCACTAG+TGG - chr1_2:77687971-77687990 None:intergenic 35.0%
TGTATAAAGTACAGTGTGAC+TGG + chr1_2:77688004-77688023 Msa0094470:intron 35.0%
! GTGCTACTAACAATTATGAC+TGG - chr1_2:77688095-77688114 None:intergenic 35.0%
GGTCTGAAGAATACAAATGT+AGG - chr1_2:77688295-77688314 None:intergenic 35.0%
ATAGCAAGATCATAGGTAGT+GGG - chr1_2:77688327-77688346 None:intergenic 35.0%
TATAGCAAGATCATAGGTAG+TGG - chr1_2:77688328-77688347 None:intergenic 35.0%
! TGATCTTGCTATAGCATTTG+TGG + chr1_2:77688335-77688354 Msa0094470:intron 35.0%
! GATCTTGCTATAGCATTTGT+GGG + chr1_2:77688336-77688355 Msa0094470:intron 35.0%
! ATCTTGCTATAGCATTTGTG+GGG + chr1_2:77688337-77688356 Msa0094470:intron 35.0%
! ATCAATGATCAAAAAGCGCA+AGG + chr1_2:77688547-77688566 Msa0094470:CDS 35.0%
! ACAAGAGAGATAGGTTTTCA+AGG - chr1_2:77688586-77688605 None:intergenic 35.0%
TCGTGGCGATTAAATCTTAA+TGG + chr1_2:77688679-77688698 Msa0094470:intron 35.0%
TGGCGATTAAATCTTAATGG+TGG + chr1_2:77688682-77688701 Msa0094470:intron 35.0%
TAATGTGGAAGACAACCAAT+TGG + chr1_2:77688811-77688830 Msa0094470:CDS 35.0%
! TTGTTTTCTGTAACCACAGT+TGG - chr1_2:77688842-77688861 None:intergenic 35.0%
!! ACAGATGCCAAAGTTGATAA+TGG + chr1_2:77688881-77688900 Msa0094470:CDS 35.0%
! TGCTTCTTCATTTGTTGCAT+CGG - chr1_2:77689137-77689156 None:intergenic 35.0%
AATATGAGTGAATCTAAGGG+AGG + chr1_2:77689271-77689290 Msa0094470:CDS 35.0%
GACCAATCAGCAAAATCAAA+CGG + chr1_2:77689295-77689314 Msa0094470:CDS 35.0%
ACCAATCAGCAAAATCAAAC+GGG + chr1_2:77689296-77689315 Msa0094470:CDS 35.0%
! ATTTCAAAGTGCCTATCCAT+TGG - chr1_2:77689448-77689467 None:intergenic 35.0%
GGTGTAACCAGGATTATAAA+GGG - chr1_2:77689608-77689627 None:intergenic 35.0%
! AGGGTAATTTTGTCATTCTG+GGG - chr1_2:77689629-77689648 None:intergenic 35.0%
! GAGGGTAATTTTGTCATTCT+GGG - chr1_2:77689630-77689649 None:intergenic 35.0%
AAAGTCTCTTCCTTCTTTCT+TGG + chr1_2:77689670-77689689 Msa0094470:intron 35.0%
GATCGATTATGTTCTTGTCA+TGG + chr1_2:77689804-77689823 Msa0094470:intron 35.0%
CCCAGAAAAAGCTTAGAATT+AGG - chr1_2:77689834-77689853 None:intergenic 35.0%
TTTAGATGCACACTTAAACG+CGG - chr1_2:77690079-77690098 None:intergenic 35.0%
CGGTTTCAATTTACATGTTG+AGG - chr1_2:77690274-77690293 None:intergenic 35.0%
TTGTTCAACAGCATGTACAA+CGG - chr1_2:77690294-77690313 None:intergenic 35.0%
ATTCACACCTCAAATATTGC+TGG - chr1_2:77690563-77690582 None:intergenic 35.0%
!! TTTCAGGTTATTGTGTTTGC+TGG + chr1_2:77690669-77690688 Msa0094470:intron 35.0%
CTTAGTTTCAGTGGTGAAAT+TGG - chr1_2:77690901-77690920 None:intergenic 35.0%
GCTTCAGGATAACTCATATT+GGG + chr1_2:77691029-77691048 Msa0094470:CDS 35.0%
GCAAAAGCAGAAGAAATTCT+TGG + chr1_2:77691167-77691186 Msa0094470:CDS 35.0%
CTATAAATAGGTCATGCTGT+TGG + chr1_2:77691340-77691359 Msa0094470:intron 35.0%
! CATCTTCTGTTCACTGGTTA+GGG - chr1_2:77686081-77686100 None:intergenic 40.0%
! TCATCTTCTGTTCACTGGTT+AGG - chr1_2:77686082-77686101 None:intergenic 40.0%
GATTTGCAGGCATACGAAAA+GGG - chr1_2:77686129-77686148 None:intergenic 40.0%
!! TTGATACCTGATGGATTTGC+AGG - chr1_2:77686142-77686161 None:intergenic 40.0%
AGCAATCGAACCATGAAGAA+CGG + chr1_2:77686208-77686227 Msa0094470:CDS 40.0%
! CTGCTTCTGTTCAGAGTTTT+GGG - chr1_2:77686236-77686255 None:intergenic 40.0%
! TCTGCTTCTGTTCAGAGTTT+TGG - chr1_2:77686237-77686256 None:intergenic 40.0%
!! CTCTGAAGCTAAAATTGAGG+TGG + chr1_2:77686330-77686349 Msa0094470:intron 40.0%
ACAGTGTCCAAACGAATGAA+TGG - chr1_2:77686364-77686383 None:intergenic 40.0%
TACACATCTGTGAAACTGCT+TGG + chr1_2:77686562-77686581 Msa0094470:intron 40.0%
AAACTGCTTGGAAGAGCTTA+TGG + chr1_2:77686574-77686593 Msa0094470:intron 40.0%
TCCAGACAAGAGAGAATGAT+CGG + chr1_2:77686752-77686771 Msa0094470:intron 40.0%
! TCAGCACCGCAATGAATTTT+GGG - chr1_2:77687400-77687419 None:intergenic 40.0%
GATGCAGAACGATAATACAG+AGG + chr1_2:77687780-77687799 Msa0094470:intron 40.0%
AGAGATGTGCCGCAAATATT+TGG + chr1_2:77687822-77687841 Msa0094470:CDS 40.0%
GCCGCAAATATTTGGAAACA+TGG + chr1_2:77687830-77687849 Msa0094470:CDS 40.0%
TGTAGAACAAGGCTAAGGTT+GGG - chr1_2:77687861-77687880 None:intergenic 40.0%
! GAAAGTGTAGAACAAGGCTA+AGG - chr1_2:77687866-77687885 None:intergenic 40.0%
CTTGTCAGTGTACAGTTTAC+AGG - chr1_2:77687942-77687961 None:intergenic 40.0%
TAGCAGTGAAAAGTAGCAGT+TGG + chr1_2:77688119-77688138 Msa0094470:intron 40.0%
ATGCTGTAAAATAGCAGCCA+TGG - chr1_2:77688251-77688270 None:intergenic 40.0%
CTGATATTGAGAACTATGGG+AGG + chr1_2:77688381-77688400 Msa0094470:intron 40.0%
TTCATCTCTCTTCAGTAGCA+AGG + chr1_2:77688510-77688529 Msa0094470:intron 40.0%
TTCTCTTGCTTCTTGAATCG+TGG + chr1_2:77688662-77688681 Msa0094470:intron 40.0%
ATTACTGCTAATTGCAGGTG+TGG + chr1_2:77688712-77688731 Msa0094470:intron 40.0%
TGTGGACTCCAAAAATGATG+AGG + chr1_2:77688730-77688749 Msa0094470:CDS 40.0%
CTCAGCACCATTATCAACTT+TGG - chr1_2:77688891-77688910 None:intergenic 40.0%
! CTCAGCACCATTTTCAACTT+TGG - chr1_2:77689032-77689051 None:intergenic 40.0%
! CTTCTTCATTTGTTGCATCG+GGG - chr1_2:77689135-77689154 None:intergenic 40.0%
! GCTTCTTCATTTGTTGCATC+GGG - chr1_2:77689136-77689155 None:intergenic 40.0%
GGGTGTAACCAGGATTATAA+AGG - chr1_2:77689609-77689628 None:intergenic 40.0%
! CGAGGGTAATTTTGTCATTC+TGG - chr1_2:77689631-77689650 None:intergenic 40.0%
TTGGGTGTAACCAAGAAAGA+AGG - chr1_2:77689683-77689702 None:intergenic 40.0%
TCTGCTTGAAGAAGGAAAGA+CGG - chr1_2:77689717-77689736 None:intergenic 40.0%
GGGATAAATCTGCTTGAAGA+AGG - chr1_2:77689725-77689744 None:intergenic 40.0%
AGGATCGTTTGATCGTTTGT+GGG + chr1_2:77690437-77690456 Msa0094470:intron 40.0%
GGTGTAACCAGCAATATTTG+AGG + chr1_2:77690553-77690572 Msa0094470:intron 40.0%
AGAATTTATAGCACAGGCTG+AGG - chr1_2:77690622-77690641 None:intergenic 40.0%
ATTGCAGCAAAAACCAGTGA+AGG + chr1_2:77690957-77690976 Msa0094470:intron 40.0%
! ATTTGTTGATGAGAGGCTTC+AGG + chr1_2:77691014-77691033 Msa0094470:CDS 40.0%
GGCTTCAGGATAACTCATAT+TGG + chr1_2:77691028-77691047 Msa0094470:CDS 40.0%
GGATAACTCATATTGGGCAA+AGG + chr1_2:77691035-77691054 Msa0094470:CDS 40.0%
! TTTTGCACCATAACCACTCT+CGG - chr1_2:77691153-77691172 None:intergenic 40.0%
GAAATTCTTGGTCAAGTCAG+AGG + chr1_2:77691179-77691198 Msa0094470:CDS 40.0%
AGAAGACCAAGAAGAAACGT+GGG + chr1_2:77691629-77691648 Msa0094470:CDS 40.0%
ATCAATAAGTCCACCCCTAT+AGG - chr1_2:77691656-77691675 None:intergenic 40.0%
TTATTCAGATGAGGAGTGAC+TGG + chr1_2:77691702-77691721 Msa0094470:exon 40.0%
TATTCAGATGAGGAGTGACT+GGG + chr1_2:77691703-77691722 Msa0094470:exon 40.0%
GATGAATTAGAGTGGTTGGG+TGG + chr1_2:77686097-77686116 Msa0094470:five_prime_UTR 45.0%
GGATTTGCAGGCATACGAAA+AGG - chr1_2:77686130-77686149 None:intergenic 45.0%
ACGAGGAGTGAAAGTGAAGA+GGG - chr1_2:77686176-77686195 None:intergenic 45.0%
!!! GTTTTGGGTTCCGTTCTTCA+TGG - chr1_2:77686221-77686240 None:intergenic 45.0%
TGCTCTTTACTTGGAACGCT+CGG + chr1_2:77686279-77686298 Msa0094470:CDS 45.0%
ACCGATCATTCTCTCTTGTC+TGG - chr1_2:77686756-77686775 None:intergenic 45.0%
! CTCAGCACCGCAATGAATTT+TGG - chr1_2:77687401-77687420 None:intergenic 45.0%
! CAAAATTCATTGCGGTGCTG+AGG + chr1_2:77687399-77687418 Msa0094470:intron 45.0%
GACACGGATATGGAATACAG+AGG - chr1_2:77687690-77687709 None:intergenic 45.0%
TGAGAAGGAAGACACGGATA+TGG - chr1_2:77687700-77687719 None:intergenic 45.0%
TAATACAGAGGGTTCCACAG+TGG + chr1_2:77687792-77687811 Msa0094470:CDS 45.0%
CATCTCTTCTAGATCCACTG+TGG - chr1_2:77687809-77687828 None:intergenic 45.0%
GTGTAGAACAAGGCTAAGGT+TGG - chr1_2:77687862-77687881 None:intergenic 45.0%
TGGCCATTGTCTCATGTTGT+TGG + chr1_2:77688024-77688043 Msa0094470:intron 45.0%
GGCCATTGTCTCATGTTGTT+GGG + chr1_2:77688025-77688044 Msa0094470:intron 45.0%
GCCATTGTCTCATGTTGTTG+GGG + chr1_2:77688026-77688045 Msa0094470:intron 45.0%
TCCCCAACAACATGAGACAA+TGG - chr1_2:77688030-77688049 None:intergenic 45.0%
CTGTAAAATAGCAGCCATGG+CGG - chr1_2:77688248-77688267 None:intergenic 45.0%
!! ATAGGTAGTGGGATAACTGC+TGG - chr1_2:77688316-77688335 None:intergenic 45.0%
TGCTATAGCATTTGTGGGGT+TGG + chr1_2:77688341-77688360 Msa0094470:intron 45.0%
! ATGGTGCTGAGACAGAGAAA+CGG + chr1_2:77688900-77688919 Msa0094470:CDS 45.0%
CAGATGAAGAAACCAAACGC+AGG + chr1_2:77689239-77689258 Msa0094470:CDS 45.0%
!! GCCCGTTTGATTTTGCTGAT+TGG - chr1_2:77689300-77689319 None:intergenic 45.0%
! TCAAACGGGCTTTCTGAGAA+TGG + chr1_2:77689310-77689329 Msa0094470:CDS 45.0%
! CAAACGGGCTTTCTGAGAAT+GGG + chr1_2:77689311-77689330 Msa0094470:CDS 45.0%
! AAACGGGCTTTCTGAGAATG+GGG + chr1_2:77689312-77689331 Msa0094470:CDS 45.0%
ATATGTACATGGCATCCTCC+TGG + chr1_2:77689422-77689441 Msa0094470:intron 45.0%
CAGGATCGTTTGATCGTTTG+TGG + chr1_2:77690436-77690455 Msa0094470:intron 45.0%
TAGAAAGCAGCAAGAAGAGC+AGG - chr1_2:77690785-77690804 None:intergenic 45.0%
TTCTTGGTCAAGTCAGAGGA+AGG + chr1_2:77691183-77691202 Msa0094470:CDS 45.0%
! GTTTCTTCTTGGTCTTCTCG+TGG - chr1_2:77691627-77691646 None:intergenic 45.0%
GAGAAGACCAAGAAGAAACG+TGG + chr1_2:77691628-77691647 Msa0094470:CDS 45.0%
ATAGGTCCCACGTTTCTTCT+TGG - chr1_2:77691638-77691657 None:intergenic 45.0%
AGAAGAAACGTGGGACCTAT+AGG + chr1_2:77691638-77691657 Msa0094470:CDS 45.0%
GAAGAAACGTGGGACCTATA+GGG + chr1_2:77691639-77691658 Msa0094470:CDS 45.0%
AAGAAACGTGGGACCTATAG+GGG + chr1_2:77691640-77691659 Msa0094470:CDS 45.0%
!! TGATAACACCGGCTTTAGCA+TGG - chr1_2:77691785-77691804 None:intergenic 45.0%
!! ACAAATTTAAATTAAAAATA+GGG - chr1_2:77687015-77687034 None:intergenic 5.0%
!! TACAAATTTAAATTAAAAAT+AGG - chr1_2:77687016-77687035 None:intergenic 5.0%
!!! AAAAAATTCTAATTTTTTTT+AGG - chr1_2:77687088-77687107 None:intergenic 5.0%
!!! TAAAAATTTTTAAGAAAATT+TGG + chr1_2:77690531-77690550 Msa0094470:intron 5.0%
!!! AAAAATTTTTAAGAAAATTT+GGG + chr1_2:77690532-77690551 Msa0094470:intron 5.0%
CGTATGCCTGCAAATCCATC+AGG + chr1_2:77686133-77686152 Msa0094470:exon 50.0%
GGAGTGAAAGTGAAGAGGGT+TGG - chr1_2:77686172-77686191 None:intergenic 50.0%
GACGAGGAGTGAAAGTGAAG+AGG - chr1_2:77686177-77686196 None:intergenic 50.0%
GCTCTTTACTTGGAACGCTC+GGG + chr1_2:77686280-77686299 Msa0094470:CDS 50.0%
GAACGGTGAGAAGGAAGACA+CGG - chr1_2:77687706-77687725 None:intergenic 50.0%
TTCACTACGTCATTCCGCCA+TGG + chr1_2:77688231-77688250 Msa0094470:intron 50.0%
!! CCACAGTTGGTGACTCCAAT+TGG - chr1_2:77688829-77688848 None:intergenic 50.0%
CCAATTGGAGTCACCAACTG+TGG + chr1_2:77688826-77688845 Msa0094470:CDS 50.0%
! ATGGTGCTGAGACAGAGAAG+AGG + chr1_2:77689041-77689060 Msa0094470:CDS 50.0%
GGGGATGCAAAAGAGCAGAT+TGG + chr1_2:77689106-77689125 Msa0094470:CDS 50.0%
! AAAGTGCCTATCCATTGGCC+AGG - chr1_2:77689443-77689462 None:intergenic 50.0%
!! TGTCATTCTGGGGTGTAACC+AGG - chr1_2:77689619-77689638 None:intergenic 50.0%
CGTTGAAATGCTGCCTTCAC+TGG - chr1_2:77690973-77690992 None:intergenic 50.0%
ACTGGGACACACCAAATGCA+TGG - chr1_2:77691082-77691101 None:intergenic 50.0%
GTATGGGTCTATCTCTCTGC+AGG + chr1_2:77691121-77691140 Msa0094470:intron 50.0%
CTTGAGCACCATGCTAAAGC+CGG + chr1_2:77691774-77691793 Msa0094470:three_prime_UTR 50.0%
CATCCTCCTGGCCAATGGAT+AGG + chr1_2:77689434-77689453 Msa0094470:intron 55.0%
GGGTCTATCTCTCTGCAGGA+TGG + chr1_2:77691125-77691144 Msa0094470:intron 55.0%
AAACGTGGGACCTATAGGGG+TGG + chr1_2:77691643-77691662 Msa0094470:CDS 55.0%
TCAGATGAGGAGTGACTGGG+AGG + chr1_2:77691706-77691725 Msa0094470:exon 55.0%
CATGGCATCCTCCTGGCCAA+TGG + chr1_2:77689429-77689448 Msa0094470:intron 60.0%
GTGCCTATCCATTGGCCAGG+AGG - chr1_2:77689440-77689459 None:intergenic 60.0%
! GATGGCGCCGAGAGTGGTTA+TGG + chr1_2:77691143-77691162 Msa0094470:CDS 60.0%
! CTGCAGGATGGCGCCGAGAG+TGG + chr1_2:77691137-77691156 Msa0094470:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 77686060 77691959 77686060 ID=Msa0094470;Name=Msa0094470
chr1_2 mRNA 77686060 77691959 77686060 ID=Msa0094470-mRNA-1;Parent=Msa0094470;Name=Msa0094470-mRNA-1;_AED=0.01;_eAED=0.01;_QI=76|1|1|1|1|1|7|239|414
chr1_2 exon 77686060 77686348 77686060 ID=Msa0094470-mRNA-1:exon:27601;Parent=Msa0094470-mRNA-1
chr1_2 exon 77687787 77687851 77687787 ID=Msa0094470-mRNA-1:exon:27602;Parent=Msa0094470-mRNA-1
chr1_2 exon 77688525 77688568 77688525 ID=Msa0094470-mRNA-1:exon:27603;Parent=Msa0094470-mRNA-1
chr1_2 exon 77688729 77689390 77688729 ID=Msa0094470-mRNA-1:exon:27604;Parent=Msa0094470-mRNA-1
chr1_2 exon 77690964 77691056 77690964 ID=Msa0094470-mRNA-1:exon:27605;Parent=Msa0094470-mRNA-1
chr1_2 exon 77691143 77691204 77691143 ID=Msa0094470-mRNA-1:exon:27606;Parent=Msa0094470-mRNA-1
chr1_2 exon 77691615 77691959 77691615 ID=Msa0094470-mRNA-1:exon:27607;Parent=Msa0094470-mRNA-1
chr1_2 five_prime_UTR 77686060 77686135 77686060 ID=Msa0094470-mRNA-1:five_prime_utr;Parent=Msa0094470-mRNA-1
chr1_2 CDS 77686136 77686348 77686136 ID=Msa0094470-mRNA-1:cds;Parent=Msa0094470-mRNA-1
chr1_2 CDS 77687787 77687851 77687787 ID=Msa0094470-mRNA-1:cds;Parent=Msa0094470-mRNA-1
chr1_2 CDS 77688525 77688568 77688525 ID=Msa0094470-mRNA-1:cds;Parent=Msa0094470-mRNA-1
chr1_2 CDS 77688729 77689390 77688729 ID=Msa0094470-mRNA-1:cds;Parent=Msa0094470-mRNA-1
chr1_2 CDS 77690964 77691056 77690964 ID=Msa0094470-mRNA-1:cds;Parent=Msa0094470-mRNA-1
chr1_2 CDS 77691143 77691204 77691143 ID=Msa0094470-mRNA-1:cds;Parent=Msa0094470-mRNA-1
chr1_2 CDS 77691615 77691720 77691615 ID=Msa0094470-mRNA-1:cds;Parent=Msa0094470-mRNA-1
chr1_2 three_prime_UTR 77691721 77691959 77691721 ID=Msa0094470-mRNA-1:three_prime_utr;Parent=Msa0094470-mRNA-1
Gene Sequence

>Msa0094470

ATGCCTGCAAATCCATCAGGTATCAAAAGAATTCCAACCCTCTTCACTTTCACTCCTCGTCAAGTTTTGTTAAGCAATCGAACCATGAAGAACGGAACCCAAAACTCTGAACAGAAGCAGAAGCTTCTTCTGAACCAATCAATTGCTCTTTACTTGGAACGCTCGGGATTCTCCAAAACCCTCAAAAAGTTTCTCTCTGAAGCTAAAATTGAGAACGATAATACAGAGGGTTCCACAGTGGATCTAGAAGAGATGTGCCGCAAATATTTGGAAACATGTAGCAAGGATGCTAAGTCAACTATCAATGATCAAAAAGCGCAAGGTGTGGACTCCAAAAATGATGAGGAAAAATCCAAGGGAAAAAAGAAAAAGAAAAGCAACGTAGTTTCTGAATCTGTTGTTGATAATGTGGAAGACAACCAATTGGAGTCACCAACTGTGGTTACAGAAAACAAAGTTAAGGATGATTTATCTACAGATGCCAAAGTTGATAATGGTGCTGAGACAGAGAAACGGTCCAAACCCAAAAAGAAAAAGAACAATAAGTCAAATATTGAAGGGGGTGCAATAGAGCAGAATGCAGTTACAGAAAATAAAGTTAAGGATGATTTATCCATAGATGCCAAAGTTGAAAATGGTGCTGAGACAGAGAAGAGGTCCAAACGTAAAATGAAAAAGAAAGATAAGTCAATTAGTGAAGGGGATGCAAAAGAGCAGATTGGAGACCCCGATGCAACAAATGAAGAAGCAACGCCCGAAGAGAAGAAAGATTCTAAAAAAAGAAAGCGACCAATTTCTAAAGAAAATGGTGAACAAGATACCGAAATAAAGGCAGATGAAGAAACCAAACGCAGGAAAATAGAAAATATGAGTGAATCTAAGGGAGGAGACCAATCAGCAAAATCAAACGGGCTTTCTGAGAATGGGGAAGAAAATTCTTCTGTGCAAAAGTCTCAGAAGAAAAAACATAAAGAATCATCTGAGCAAAAACCAGTGAAGGCAGCATTTCAACGCGTACAAGTTGACAAAGTAGAATTTGTTGATGAGAGGCTTCAGGATAACTCATATTGGGCAAAGGATGGCGCCGAGAGTGGTTATGGTGCAAAAGCAGAAGAAATTCTTGGTCAAGTCAGAGGAAGGGATTTTCGCCACGAGAAGACCAAGAAGAAACGTGGGACCTATAGGGGTGGACTTATTGATTTACATTCCCACTCAGTTAAGTTTAATTATTCAGATGAGGAGTGA

Protein sequence

>Msa0094470

MPANPSGIKRIPTLFTFTPRQVLLSNRTMKNGTQNSEQKQKLLLNQSIALYLERSGFSKTLKKFLSEAKIENDNTEGSTVDLEEMCRKYLETCSKDAKSTINDQKAQGVDSKNDEEKSKGKKKKKSNVVSESVVDNVEDNQLESPTVVTENKVKDDLSTDAKVDNGAETEKRSKPKKKKNNKSNIEGGAIEQNAVTENKVKDDLSIDAKVENGAETEKRSKRKMKKKDKSISEGDAKEQIGDPDATNEEATPEEKKDSKKRKRPISKENGEQDTEIKADEETKRRKIENMSESKGGDQSAKSNGLSENGEENSSVQKSQKKKHKESSEQKPVKAAFQRVQVDKVEFVDERLQDNSYWAKDGAESGYGAKAEEILGQVRGRDFRHEKTKKKRGTYRGGLIDLHSHSVKFNYSDEE*