AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0562800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0562800 MtrunA17_Chr8g0376561 88.273 469 22 2 1 436 1 469 0.0 817
Msa0562800 MtrunA17_Chr7g0233361 30.340 412 234 10 33 405 68 465 1.31e-44 161
Msa0562800 MtrunA17_Chr8g0382871 31.088 386 213 16 61 410 113 481 1.64e-37 142
Msa0562800 MtrunA17_Chr7g0244421 31.044 364 204 14 63 391 115 466 9.64e-36 137
Msa0562800 MtrunA17_Chr4g0038831 25.740 338 183 11 111 394 166 489 1.64e-23 102
Msa0562800 MtrunA17_Chr3g0145711 28.214 280 166 7 63 319 108 375 2.48e-18 87.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0562800 AT5G46180.1 63.972 433 122 3 36 435 43 474 0.0 573
Msa0562800 AT1G80600.1 28.780 410 245 8 30 403 55 453 9.50e-45 162
Msa0562800 AT4G39660.2 30.311 386 216 15 61 410 33 401 3.90e-38 143
Msa0562800 AT4G39660.1 30.311 386 216 15 61 410 108 476 1.41e-37 143
Msa0562800 AT2G38400.1 29.558 362 211 11 63 391 112 462 1.46e-33 132
Msa0562800 AT2G38400.2 29.121 364 214 11 61 391 110 462 1.58e-33 132
Msa0562800 AT3G08860.1 28.346 381 218 14 61 404 113 475 3.67e-32 127
Msa0562800 AT3G08860.2 28.533 368 212 13 61 391 113 466 5.16e-32 127
Msa0562800 AT3G22200.1 29.482 251 146 7 173 394 231 479 3.85e-24 105
Msa0562800 AT3G22200.2 29.482 251 146 7 173 394 240 488 4.74e-24 104
Msa0562800 AT5G63570.2 27.336 289 174 8 63 327 51 327 1.01e-16 82.0
Msa0562800 AT5G63570.1 27.336 289 174 8 63 327 114 390 1.29e-16 82.4
Msa0562800 AT3G48730.1 26.298 289 177 8 63 327 112 388 4.45e-15 77.4

Find 121 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGCATAGCTGCATTTATTT+TGG 0.157532 4_1:+62974245 Msa0562800:CDS
GGCCATCTTAAAGTTGATTT+TGG 0.199551 4_1:+62974073 Msa0562800:CDS
TTAAGATGGCCTGGCATTAA+AGG 0.213274 4_1:-62974061 None:intergenic
GCTGGAGGAGCAGCATCTTT+TGG 0.213355 4_1:-62977937 None:intergenic
AATCATCAACACGTTATATT+TGG 0.227981 4_1:-62975493 None:intergenic
ATATGAATGAATGTGTAATA+AGG 0.263883 4_1:-62972522 None:intergenic
TAGACCAGGCATTCATTATC+TGG 0.272689 4_1:-62978006 None:intergenic
TTAATTTCATAAATATGATA+TGG 0.296649 4_1:-62978118 None:intergenic
TATGAATGAATGTGTAATAA+GGG 0.308089 4_1:-62972521 None:intergenic
GAAAGTTTGTCCCCTGTATC+AGG 0.309360 4_1:+62977305 Msa0562800:CDS
AATGAAGCTACCCGTGGTTT+TGG 0.314723 4_1:+62974037 Msa0562800:CDS
ATTCTTTGTCGATGATTGTT+TGG 0.326759 4_1:-62972692 None:intergenic
CGCACCTCCTTCACATGGTC+CGG 0.342009 4_1:-62977245 None:intergenic
CGAGAAGCTCACCTCCCATT+TGG 0.348974 4_1:-62977193 None:intergenic
CTTAATTCAAAGCCTGATAC+AGG 0.361779 4_1:-62977317 None:intergenic
TCTGCAAGAACTGCGCTAAC+TGG 0.362917 4_1:-62976338 None:intergenic
TACAGAGGAACCAGAACTTT+TGG 0.363782 4_1:+62972636 Msa0562800:CDS
TCATGTTGTGGCTGCTTCAA+TGG 0.367473 4_1:+62973980 Msa0562800:CDS
CATAGTTATACCTCATTGTT+GGG 0.368104 4_1:-62973731 None:intergenic
AGCCTTGTTTGGTTATGATA+TGG 0.380865 4_1:+62973625 Msa0562800:CDS
TTCTTTGTCGATGATTGTTT+GGG 0.389344 4_1:-62972691 None:intergenic
TGTGGCAACACCAAAAGTTC+TGG 0.395603 4_1:-62972646 None:intergenic
GAACCTATCCAAGGGGAAGC+TGG 0.400196 4_1:+62974267 Msa0562800:CDS
TCATAGTTATACCTCATTGT+TGG 0.402470 4_1:-62973732 None:intergenic
CGAGGGCCTTAGAACCTTGT+TGG 0.409141 4_1:-62977870 None:intergenic
TGAGATCCAACAAGGTTCTA+AGG 0.410990 4_1:+62977864 Msa0562800:CDS
ACAGCTTTCAAATAACCATC+TGG 0.413613 4_1:-62975456 None:intergenic
GAGAAGCTCACCTCCCATTT+GGG 0.418819 4_1:-62977192 None:intergenic
TGCTTCAATGGTCGTACATT+GGG 0.424592 4_1:+62973992 Msa0562800:CDS
AAAGATGCTGCTCCTCCAGC+TGG 0.425140 4_1:+62977940 Msa0562800:CDS
GAGTATTTGACAGCCTTGTT+TGG 0.427807 4_1:+62973614 Msa0562800:CDS
TCTTAAAGCTTTAAAAGATC+AGG 0.428054 4_1:+62973532 Msa0562800:CDS
TTTGCATGAGCAAATACAAT+AGG 0.428807 4_1:-62973065 None:intergenic
TGAACACCAACCACTACATC+TGG 0.440669 4_1:-62975585 None:intergenic
CCTTCAGCACCAGTATTCAT+AGG 0.441808 4_1:-62973653 None:intergenic
GTGAAGGAGGTGCGGGGAAG+AGG 0.443048 4_1:+62977254 Msa0562800:CDS
TAAGGCCCTCGCTGATGTGC+TGG 0.445290 4_1:+62977882 Msa0562800:CDS
CGTTGTGGTCGAGTCGTGTA+TGG 0.450567 4_1:+62977979 Msa0562800:CDS
ATTGCTGATGAAATACAAAC+TGG 0.456192 4_1:+62975513 Msa0562800:CDS
CGGGGAAGAGGACTGTTCAT+TGG 0.461273 4_1:+62977266 Msa0562800:CDS
AACCTATCCAAGGGGAAGCT+GGG 0.467176 4_1:+62974268 Msa0562800:CDS
GATACTAGGGAAAGCTTTGG+TGG 0.472093 4_1:+62976305 Msa0562800:intron
ATTGTATTTGCTCATGCAAA+GGG 0.473811 4_1:+62973068 Msa0562800:CDS
GGACCATGTGAAGGAGGTGC+GGG 0.476342 4_1:+62977247 Msa0562800:CDS
TCAGATACTAGGGAAAGCTT+TGG 0.477688 4_1:+62976302 Msa0562800:intron
CAAACTGGATTAGCAAGAAC+AGG 0.479961 4_1:+62975528 Msa0562800:CDS
ATTGGACAGATCTACCCAAA+TGG 0.483780 4_1:+62977178 Msa0562800:intron
ATGAATGAATGTGTAATAAG+GGG 0.487314 4_1:-62972520 None:intergenic
CTTTAAAAGATCAGGCAGAC+AGG 0.501503 4_1:+62973540 Msa0562800:CDS
CAAATGGGAGGTGAGCTTCT+CGG 0.504493 4_1:+62977194 Msa0562800:CDS
AACATACCCCAGCTTCCCCT+TGG 0.504988 4_1:-62974275 None:intergenic
CGTTGAAGTTAGCAAGAAAG+TGG 0.505236 4_1:+62973687 Msa0562800:CDS
CCACAACGATCACATGCACT+AGG 0.505325 4_1:-62977964 None:intergenic
CTGCTTCAATGGTCGTACAT+TGG 0.506187 4_1:+62973991 Msa0562800:CDS
TTGGGAAGATGAAGAAGCGT+TGG 0.508848 4_1:-62972673 None:intergenic
TTTCTTACCTTATGCACAGT+GGG 0.509433 4_1:-62977406 None:intergenic
ATGGCAACTGCACTGGCCAA+TGG 0.511220 4_1:-62976904 None:intergenic
TGAGGCAATGGCAACTGCAC+TGG 0.516585 4_1:-62976911 None:intergenic
CACCAAAATCAACTTTAAGA+TGG 0.516646 4_1:-62974075 None:intergenic
TATTGTATTTGCTCATGCAA+AGG 0.517613 4_1:+62973067 Msa0562800:CDS
GCTCTTATTGTCTCATGTTG+TGG 0.519417 4_1:+62973968 Msa0562800:CDS
AAATCAACTTTAAGATGGCC+TGG 0.519591 4_1:-62974070 None:intergenic
TTACACATAACATCAATCAA+TGG 0.520997 4_1:+62972575 Msa0562800:exon
TCACATGCACTAGGGCCAGC+TGG 0.522239 4_1:-62977955 None:intergenic
CAGCTTTCAAATAACCATCT+GGG 0.525779 4_1:-62975455 None:intergenic
TTGGACAGATCTACCCAAAT+GGG 0.526655 4_1:+62977179 Msa0562800:intron
TGAGCAAATACAATAGGAAG+TGG 0.526855 4_1:-62973059 None:intergenic
ATGATGATGTAAATCAAAGT+TGG 0.528709 4_1:-62972552 None:intergenic
ATGGTACTTCCTATGAATAC+TGG 0.531481 4_1:+62973644 Msa0562800:CDS
GCACCTCCTTCACATGGTCC+GGG 0.537138 4_1:-62977244 None:intergenic
TTCTTTGATCACTTCAAGTG+AGG 0.543995 4_1:-62976929 None:intergenic
TTAACCAGATAATGAATGCC+TGG 0.546110 4_1:+62978002 Msa0562800:exon
TGGGAAGATGAAGAAGCGTT+GGG 0.548907 4_1:-62972672 None:intergenic
GATCACTTCAAGTGAGGCAA+TGG 0.551674 4_1:-62976923 None:intergenic
TGGTTAGAAATAGACAGCAC+TGG 0.552720 4_1:-62978174 None:intergenic
AATTGTGTCATGTGTTGACT+TGG 0.561328 4_1:-62977369 None:intergenic
TTCCCCGCACCTCCTTCACA+TGG 0.564937 4_1:-62977250 None:intergenic
AATGAATGTGTAATAAGGGG+GGG 0.575370 4_1:-62972517 None:intergenic
CAAATACAATAGGAAGTGGA+TGG 0.580722 4_1:-62973055 None:intergenic
TGAATGAATGTGTAATAAGG+GGG 0.581614 4_1:-62972519 None:intergenic
GTCAAATACTCAGCAAACAC+CGG 0.582762 4_1:-62973602 None:intergenic
GAATACTGGTGCTGAAGGTG+TGG 0.583184 4_1:+62973658 Msa0562800:CDS
ACCCCAGCTTCCCCTTGGAT+AGG 0.586113 4_1:-62974270 None:intergenic
ACCTATCCAAGGGGAAGCTG+GGG 0.586910 4_1:+62974269 Msa0562800:CDS
ACTGGGAATAAGTGATCTCA+AGG 0.588655 4_1:-62978156 None:intergenic
GAATGAATGTGTAATAAGGG+GGG 0.597169 4_1:-62972518 None:intergenic
AGCTTTCAAATAACCATCTG+GGG 0.599511 4_1:-62975454 None:intergenic
CGGACCATGTGAAGGAGGTG+CGG 0.603381 4_1:+62977246 Msa0562800:CDS
GGTTAGAAATAGACAGCACT+GGG 0.604578 4_1:-62978173 None:intergenic
TAATTCAAAGCCTGATACAG+GGG 0.605478 4_1:-62977315 None:intergenic
GTTGAAGTTAGCAAGAAAGT+GGG 0.607885 4_1:+62973688 Msa0562800:CDS
TTAATTCAAAGCCTGATACA+GGG 0.608427 4_1:-62977316 None:intergenic
AGAAGTTCGTCCAGATGTAG+TGG 0.615199 4_1:+62975575 Msa0562800:CDS
TGAAGAAGCGTTGGGTTGTG+TGG 0.618995 4_1:-62972664 None:intergenic
CACAACGATCACATGCACTA+GGG 0.624398 4_1:-62977963 None:intergenic
ACTAGGGAAAGCTTTGGTGG+AGG 0.625217 4_1:+62976308 Msa0562800:CDS
AATTTCCAGCACATCAGCGA+GGG 0.626318 4_1:-62977887 None:intergenic
GACCATGTGAAGGAGGTGCG+GGG 0.627725 4_1:+62977248 Msa0562800:CDS
GCATTAAAGGACCAAAACCA+CGG 0.628989 4_1:-62974048 None:intergenic
TACCATATCATAACCAAACA+AGG 0.631313 4_1:-62973627 None:intergenic
ACAATACCCGGACCATGTGA+AGG 0.644513 4_1:+62977238 Msa0562800:CDS
GCTTTCAAATAACCATCTGG+GGG 0.649011 4_1:-62975453 None:intergenic
TCTTACCTTATGCACAGTGG+GGG 0.652538 4_1:-62977404 None:intergenic
CTTTCTTACCTTATGCACAG+TGG 0.652810 4_1:-62977407 None:intergenic
CATTAAAGGACCAAAACCAC+GGG 0.654497 4_1:-62974047 None:intergenic
CCTATGAATACTGGTGCTGA+AGG 0.655355 4_1:+62973653 Msa0562800:CDS
TTCTTACCTTATGCACAGTG+GGG 0.660148 4_1:-62977405 None:intergenic
GAAGATTCAGAAACAATACC+CGG 0.661569 4_1:+62977226 Msa0562800:CDS
GACAGATCTACCCAAATGGG+AGG 0.666226 4_1:+62977182 Msa0562800:intron
CCAAAATAAATGCAGCTATG+CGG 0.671952 4_1:-62974245 None:intergenic
AGATCAGGCAGACAGGCTGA+CGG 0.672284 4_1:+62973547 Msa0562800:CDS
CATGCACTAGGGCCAGCTGG+AGG 0.674851 4_1:-62977952 None:intergenic
ATACCCGGACCATGTGAAGG+AGG 0.676758 4_1:+62977241 Msa0562800:CDS
AAGAAGAGAGACTTGCTGAG+AGG 0.679464 4_1:+62976947 Msa0562800:CDS
TGTGACAATGAAGCTACCCG+TGG 0.679963 4_1:+62974031 Msa0562800:CDS
CCTAGTGCATGTGATCGTTG+TGG 0.687700 4_1:+62977964 Msa0562800:CDS
TTGAAGTTAGCAAGAAAGTG+GGG 0.692526 4_1:+62973689 Msa0562800:CDS
AGTGCGGATGAGATCCAACA+AGG 0.696962 4_1:+62977856 Msa0562800:intron
CTTTCAAATAACCATCTGGG+GGG 0.711042 4_1:-62975452 None:intergenic
CAATTTCCAGCACATCAGCG+AGG 0.712817 4_1:-62977888 None:intergenic
CTTTCTTGCTAACTTCAACG+CGG 0.721978 4_1:-62973684 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTAGTTTAATATATGA+AGG - chr4_1:62972847-62972866 None:intergenic 10.0%
!!! AAATATATTGATTTTTTATC+TGG + chr4_1:62973119-62973138 Msa0562800:intron 10.0%
!!! TTTTTTATTCCTTAATTTTT+GGG + chr4_1:62973434-62973453 Msa0562800:intron 10.0%
!!! ATAAGTATTCTTTTTTTTTT+TGG - chr4_1:62974329-62974348 None:intergenic 10.0%
!! AATATTAATGTTATGAAAAA+TGG + chr4_1:62975283-62975302 Msa0562800:intron 10.0%
!! ATATTAATGTTATGAAAAAT+GGG + chr4_1:62975284-62975303 Msa0562800:intron 10.0%
!!! ATTTTAATGAATGAAATTAT+CGG - chr4_1:62976793-62976812 None:intergenic 10.0%
!! AATTAATTGTTTATTAAAGA+AGG + chr4_1:62976815-62976834 Msa0562800:intron 10.0%
!! TTGAATAAATTTATTTCATT+AGG + chr4_1:62977013-62977032 Msa0562800:intron 10.0%
!! TTAATTTCATAAATATGATA+TGG - chr4_1:62978121-62978140 None:intergenic 10.0%
!!! TTTTCTTATATTATTATCAC+CGG + chr4_1:62973254-62973273 Msa0562800:intron 15.0%
!! CAAAAATTAAGGAATAAAAA+AGG - chr4_1:62973435-62973454 None:intergenic 15.0%
!!! CTTTTTTATTCCTTAATTTT+TGG + chr4_1:62973433-62973452 Msa0562800:intron 15.0%
!!! TTTAAAGCTTTAAGAATTTT+AGG - chr4_1:62973527-62973546 None:intergenic 15.0%
!! ATAAGAATAGAAAATAGAAT+CGG - chr4_1:62974625-62974644 None:intergenic 15.0%
!! AAACTATTATACTTCATAAA+TGG - chr4_1:62975119-62975138 None:intergenic 15.0%
!! AATAAAAAAAATCAGTTTGA+CGG - chr4_1:62975255-62975274 None:intergenic 15.0%
!! TCTGAACTTAAATTATTAAA+AGG - chr4_1:62975730-62975749 None:intergenic 15.0%
!!! TTTTAATAATTTAAGTTCAG+AGG + chr4_1:62975729-62975748 Msa0562800:intron 15.0%
!! TACAGAATAAAAAAGAAAAA+GGG - chr4_1:62976222-62976241 None:intergenic 15.0%
!! TTACAGAATAAAAAAGAAAA+AGG - chr4_1:62976223-62976242 None:intergenic 15.0%
!! AAAAATAAATAACCATTACA+AGG - chr4_1:62976693-62976712 None:intergenic 15.0%
!! TATGAATGAATGTGTAATAA+GGG - chr4_1:62972524-62972543 None:intergenic 20.0%
!! ATATGAATGAATGTGTAATA+AGG - chr4_1:62972525-62972544 None:intergenic 20.0%
!! TTAATCAGGTATAAATTGAA+CGG + chr4_1:62973153-62973172 Msa0562800:intron 20.0%
!! ATCAAGATATTACAACTATT+AGG - chr4_1:62973769-62973788 None:intergenic 20.0%
!! TCTCATTTAAAAAATCCAAA+TGG - chr4_1:62973892-62973911 None:intergenic 20.0%
!!! TGGATTTTTTAAATGAGATT+CGG + chr4_1:62973894-62973913 Msa0562800:intron 20.0%
!!! GTCATTTGTTTTATCTTAAA+TGG + chr4_1:62974418-62974437 Msa0562800:intron 20.0%
!! ATAGAAAATAGAATCAGTTA+GGG - chr4_1:62974619-62974638 None:intergenic 20.0%
!! AATAGAAAATAGAATCAGTT+AGG - chr4_1:62974620-62974639 None:intergenic 20.0%
!! ATTCTGTTATTATGAAATGT+TGG + chr4_1:62974880-62974899 Msa0562800:intron 20.0%
!! TAACGTCATATAAAAAAATG+TGG - chr4_1:62975411-62975430 None:intergenic 20.0%
!!! ATGACGTTATATTTTTTTAC+AGG + chr4_1:62975422-62975441 Msa0562800:intron 20.0%
!! AGGAAAAACTAGATATAATA+TGG - chr4_1:62976013-62976032 None:intergenic 20.0%
!! AAGAAATTAGTGGTATAAAA+AGG - chr4_1:62976267-62976286 None:intergenic 20.0%
!! AAGAAAGTTAAAGAAATTAG+TGG - chr4_1:62976277-62976296 None:intergenic 20.0%
!!! TTTGATTTGATTAAGTTGAA+AGG + chr4_1:62976591-62976610 Msa0562800:intron 20.0%
!! TAAAAAAAAAATCCATCCTA+TGG + chr4_1:62976712-62976731 Msa0562800:intron 20.0%
!! AAAAAAAAAATCCATCCTAT+GGG + chr4_1:62976713-62976732 Msa0562800:intron 20.0%
!! GAAAAGTAACAGAAAAAAAA+AGG - chr4_1:62976864-62976883 None:intergenic 20.0%
!! TGAATTAAGTGAAAAATTGA+AGG + chr4_1:62977331-62977350 Msa0562800:CDS 20.0%
!! TATAGTGAAAAATGAAAACA+AGG - chr4_1:62977578-62977597 None:intergenic 20.0%
!! AATTATTGAAATTGAAAGCT+AGG + chr4_1:62977603-62977622 Msa0562800:intron 20.0%
!!! TTTTATAAAATTCATAGACC+AGG - chr4_1:62978023-62978042 None:intergenic 20.0%
!!! ACTTATATTTTACTTTTGCT+TGG + chr4_1:62978042-62978061 Msa0562800:three_prime_UTR 20.0%
!! TGAAATTAAAAAATGTCACT+AGG + chr4_1:62978132-62978151 Msa0562800:three_prime_UTR 20.0%
! ATGAATGAATGTGTAATAAG+GGG - chr4_1:62972523-62972542 None:intergenic 25.0%
!! ATGATGATGTAAATCAAAGT+TGG - chr4_1:62972555-62972574 None:intergenic 25.0%
! TTACACATAACATCAATCAA+TGG + chr4_1:62972575-62972594 Msa0562800:exon 25.0%
!!! AAAGACACCATTTTTATTTC+TGG + chr4_1:62972781-62972800 Msa0562800:intron 25.0%
!!! AAGACACCATTTTTATTTCT+GGG + chr4_1:62972782-62972801 Msa0562800:intron 25.0%
!!! ATCTTTTTTAATCACTCCAT+TGG + chr4_1:62972872-62972891 Msa0562800:intron 25.0%
!!! TCTTTTTTAATCACTCCATT+GGG + chr4_1:62972873-62972892 Msa0562800:intron 25.0%
!!! TCTTAAAGCTTTAAAAGATC+AGG + chr4_1:62973532-62973551 Msa0562800:CDS 25.0%
!!! TTGCATTTTTCAAAATTGTC+CGG + chr4_1:62973792-62973811 Msa0562800:intron 25.0%
!!! TTTTTTGTAGCTATACCATT+TGG + chr4_1:62973874-62973893 Msa0562800:intron 25.0%
! ATTCTGTTATTGTGAAATGA+TGG + chr4_1:62974507-62974526 Msa0562800:intron 25.0%
!! ATCTAAGATATTGCTTATAG+AGG + chr4_1:62974542-62974561 Msa0562800:intron 25.0%
!! TCTAAGATATTGCTTATAGA+GGG + chr4_1:62974543-62974562 Msa0562800:intron 25.0%
! ATCTCAGAAATTGCTTATAT+AGG + chr4_1:62974915-62974934 Msa0562800:intron 25.0%
! TCTCAGAAATTGCTTATATA+GGG + chr4_1:62974916-62974935 Msa0562800:intron 25.0%
! ATAGAAAATAGAATCGGTAA+AGG - chr4_1:62974992-62975011 None:intergenic 25.0%
!!! AATGTACCGTTTTTGAATTT+CGG + chr4_1:62975068-62975087 Msa0562800:intron 25.0%
! AATCATCAACACGTTATATT+TGG - chr4_1:62975496-62975515 None:intergenic 25.0%
! ACAGAATATATAAGAGGTAA+AGG - chr4_1:62975611-62975630 None:intergenic 25.0%
! AGAGATACAGAATATATAAG+AGG - chr4_1:62975617-62975636 None:intergenic 25.0%
! TGGTAAAACAGAGAATATTA+TGG + chr4_1:62975911-62975930 Msa0562800:intron 25.0%
! AAAACAGAGAATATTATGGT+TGG + chr4_1:62975915-62975934 Msa0562800:intron 25.0%
!! AAAAACAAACATAAGTTGGA+TGG - chr4_1:62976161-62976180 None:intergenic 25.0%
! GTGAAAAAACAAACATAAGT+TGG - chr4_1:62976165-62976184 None:intergenic 25.0%
! TCACAAAAAAGAGAAACTTA+TGG + chr4_1:62976181-62976200 Msa0562800:intron 25.0%
!!! TTTCTTTTGATTCAGATACT+AGG + chr4_1:62976291-62976310 Msa0562800:intron 25.0%
!!! TTCTTTTGATTCAGATACTA+GGG + chr4_1:62976292-62976311 Msa0562800:intron 25.0%
! ACAAGAAAACAATAAACGAA+TGG - chr4_1:62976435-62976454 None:intergenic 25.0%
!! TAAGTTGAAAGGTTTCAAAA+AGG + chr4_1:62976602-62976621 Msa0562800:intron 25.0%
!!! GTTAGTCTTATATATTGATC+TGG + chr4_1:62977081-62977100 Msa0562800:intron 25.0%
! AACTTAAGACATTGCTTAAA+TGG - chr4_1:62977442-62977461 None:intergenic 25.0%
! TTCATAAGCATAACTAGATT+AGG - chr4_1:62977641-62977660 None:intergenic 25.0%
! AAAGATTTGATTACTGTGAA+TGG + chr4_1:62977691-62977710 Msa0562800:intron 25.0%
!!! AAGCATTGTTTCTTTTATCT+AGG - chr4_1:62977727-62977746 None:intergenic 25.0%
!! TGTAAATGTCCCTAATATTT+TGG + chr4_1:62977803-62977822 Msa0562800:intron 25.0%
! AATCCTAGACCAAAATATTA+GGG - chr4_1:62977815-62977834 None:intergenic 25.0%
! AAATCCTAGACCAAAATATT+AGG - chr4_1:62977816-62977835 None:intergenic 25.0%
!!! ATTTTACTTTTGCTTGGAAA+AGG + chr4_1:62978048-62978067 Msa0562800:three_prime_UTR 25.0%
TGAATGAATGTGTAATAAGG+GGG - chr4_1:62972522-62972541 None:intergenic 30.0%
TTCTTTGTCGATGATTGTTT+GGG - chr4_1:62972694-62972713 None:intergenic 30.0%
ATTCTTTGTCGATGATTGTT+TGG - chr4_1:62972695-62972714 None:intergenic 30.0%
AGGGAAAGATATATACTTGT+GGG - chr4_1:62972730-62972749 None:intergenic 30.0%
AAGGGAAAGATATATACTTG+TGG - chr4_1:62972731-62972750 None:intergenic 30.0%
AACAGAACAGAAGAAAACAA+GGG - chr4_1:62972749-62972768 None:intergenic 30.0%
!! TATGAAGGTTGATTAGCTTA+AGG - chr4_1:62972832-62972851 None:intergenic 30.0%
TTTGCATGAGCAAATACAAT+AGG - chr4_1:62973068-62973087 None:intergenic 30.0%
TATTGTATTTGCTCATGCAA+AGG + chr4_1:62973067-62973086 Msa0562800:CDS 30.0%
ATTGTATTTGCTCATGCAAA+GGG + chr4_1:62973068-62973087 Msa0562800:CDS 30.0%
TCAATATATTTGTTTCCCTC+TGG - chr4_1:62973110-62973129 None:intergenic 30.0%
TTTCTATTTCCTTTGTGAAC+TGG + chr4_1:62973363-62973382 Msa0562800:intron 30.0%
TAGCATTAGTAAACAGGATT+TGG - chr4_1:62973404-62973423 None:intergenic 30.0%
! TCGTCTTTTCCCAAAAATTA+AGG - chr4_1:62973446-62973465 None:intergenic 30.0%
!!! AGTGTATGTCATTTTTCTTC+AGG + chr4_1:62973490-62973509 Msa0562800:intron 30.0%
!!! GTGTATGTCATTTTTCTTCA+GGG + chr4_1:62973491-62973510 Msa0562800:intron 30.0%
! TTTCTACAATGATCGTTTTC+CGG + chr4_1:62973583-62973602 Msa0562800:CDS 30.0%
TACCATATCATAACCAAACA+AGG - chr4_1:62973630-62973649 None:intergenic 30.0%
GAAAAAAATTCCCAACAATG+AGG + chr4_1:62973721-62973740 Msa0562800:CDS 30.0%
CATAGTTATACCTCATTGTT+GGG - chr4_1:62973734-62973753 None:intergenic 30.0%
TCATAGTTATACCTCATTGT+TGG - chr4_1:62973735-62973754 None:intergenic 30.0%
AAGCAAATATTTAGCATCAC+CGG - chr4_1:62973814-62973833 None:intergenic 30.0%
TCAGCAAAAGTAAATTGACA+CGG - chr4_1:62973932-62973951 None:intergenic 30.0%
!! TGTCAATTTACTTTTGCTGA+TGG + chr4_1:62973932-62973951 Msa0562800:intron 30.0%
! CACCAAAATCAACTTTAAGA+TGG - chr4_1:62974078-62974097 None:intergenic 30.0%
!!! TTTATTTTGGAACCTATCCA+AGG + chr4_1:62974258-62974277 Msa0562800:CDS 30.0%
!!! TTATTTTGGAACCTATCCAA+GGG + chr4_1:62974259-62974278 Msa0562800:CDS 30.0%
CATCATACAAAGGAACATAT+TGG - chr4_1:62974360-62974379 None:intergenic 30.0%
!!! ATAGAGTTACTTTTTTCCTG+AGG + chr4_1:62974722-62974741 Msa0562800:intron 30.0%
CTTGCAAAGACTAAATCATA+TGG - chr4_1:62974764-62974783 None:intergenic 30.0%
! ATGATTTAGTCTTTGCAAGA+AGG + chr4_1:62974765-62974784 Msa0562800:intron 30.0%
CAGATATATAAGAGATATGC+TGG - chr4_1:62975030-62975049 None:intergenic 30.0%
GTAACACCGAAATTCAAAAA+CGG - chr4_1:62975077-62975096 None:intergenic 30.0%
TGTGGAAAAGATGATATGTT+TGG - chr4_1:62975393-62975412 None:intergenic 30.0%
ATTGCTGATGAAATACAAAC+TGG + chr4_1:62975513-62975532 Msa0562800:CDS 30.0%
ATGTTTATAGCGAAGTACAA+GGG - chr4_1:62975648-62975667 None:intergenic 30.0%
!! AAAGGAAGTAAGGTATCTTT+TGG - chr4_1:62975844-62975863 None:intergenic 30.0%
TGATATGGTTAAAGGAAGTA+AGG - chr4_1:62975854-62975873 None:intergenic 30.0%
GAATCGTATGATATGGTTAA+AGG - chr4_1:62975862-62975881 None:intergenic 30.0%
! CTTGTACTTTTGTGTTTTAC+TGG + chr4_1:62975891-62975910 Msa0562800:intron 30.0%
! TATTCTGTAACCTTTTTCTG+AGG + chr4_1:62976233-62976252 Msa0562800:intron 30.0%
CAATAGTTGTCAAACATAGA+AGG + chr4_1:62976455-62976474 Msa0562800:intron 30.0%
GTTAAATCAAGACATGCAAA+CGG - chr4_1:62976671-62976690 None:intergenic 30.0%
GTCTTGATTTAACCTTGTAA+TGG + chr4_1:62976678-62976697 Msa0562800:intron 30.0%
AAGAAATCAATGCAAAAGTG+AGG - chr4_1:62976757-62976776 None:intergenic 30.0%
!!! GTTACTTTTCACAGTACTTT+TGG + chr4_1:62976874-62976893 Msa0562800:intron 30.0%
TTAATTCAAAGCCTGATACA+GGG - chr4_1:62977319-62977338 None:intergenic 30.0%
AGTGAAAAATTGAAGGATAG+AGG + chr4_1:62977338-62977357 Msa0562800:CDS 30.0%
CAATGGTGAAAGTTACAAAT+AGG - chr4_1:62977492-62977511 None:intergenic 30.0%
ATTTGATTACTGTGAATGGT+AGG + chr4_1:62977695-62977714 Msa0562800:intron 30.0%
GATAAAAGAAACAATGCTTC+TGG + chr4_1:62977728-62977747 Msa0562800:intron 30.0%
AATGAATGTGTAATAAGGGG+GGG - chr4_1:62972520-62972539 None:intergenic 35.0%
GAATGAATGTGTAATAAGGG+GGG - chr4_1:62972521-62972540 None:intergenic 35.0%
! TTGATGCGAAGATTTTACAG+AGG + chr4_1:62972621-62972640 Msa0562800:CDS 35.0%
GAACAGAACAGAAGAAAACA+AGG - chr4_1:62972750-62972769 None:intergenic 35.0%
GAGAGACCCAGAAATAAAAA+TGG - chr4_1:62972791-62972810 None:intergenic 35.0%
TTACAATCCAAACAACCCAA+TGG - chr4_1:62972891-62972910 None:intergenic 35.0%
CAAATACAATAGGAAGTGGA+TGG - chr4_1:62973058-62973077 None:intergenic 35.0%
TGAGCAAATACAATAGGAAG+TGG - chr4_1:62973062-62973081 None:intergenic 35.0%
AACCATCTTCATTCATCTGA+GGG - chr4_1:62973333-62973352 None:intergenic 35.0%
AAACCATCTTCATTCATCTG+AGG - chr4_1:62973334-62973353 None:intergenic 35.0%
CAATAAACTCCAGTTCACAA+AGG - chr4_1:62973375-62973394 None:intergenic 35.0%
TGAACTGGAGTTTATTGTTG+TGG + chr4_1:62973378-62973397 Msa0562800:intron 35.0%
AAGCAGTAGCATTAGTAAAC+AGG - chr4_1:62973410-62973429 None:intergenic 35.0%
!! AGCCTTGTTTGGTTATGATA+TGG + chr4_1:62973625-62973644 Msa0562800:CDS 35.0%
ATGGTACTTCCTATGAATAC+TGG + chr4_1:62973644-62973663 Msa0562800:CDS 35.0%
GTTGAAGTTAGCAAGAAAGT+GGG + chr4_1:62973688-62973707 Msa0562800:CDS 35.0%
TTGAAGTTAGCAAGAAAGTG+GGG + chr4_1:62973689-62973708 Msa0562800:CDS 35.0%
!! AAATCAACTTTAAGATGGCC+TGG - chr4_1:62974073-62974092 None:intergenic 35.0%
!! GGCCATCTTAAAGTTGATTT+TGG + chr4_1:62974073-62974092 Msa0562800:CDS 35.0%
CCAAAATAAATGCAGCTATG+CGG - chr4_1:62974248-62974267 None:intergenic 35.0%
!!! TATTTTGGAACCTATCCAAG+GGG + chr4_1:62974260-62974279 Msa0562800:CDS 35.0%
!! TACAAGTCTTGTGACTTGTT+TGG + chr4_1:62974589-62974608 Msa0562800:intron 35.0%
! AACTAGACATCTTTTTCCTC+AGG - chr4_1:62974741-62974760 None:intergenic 35.0%
TCTATTGTGATACATGAGCA+CGG - chr4_1:62974813-62974832 None:intergenic 35.0%
!!! TACAAGTCTTGCGACTTTTT+TGG + chr4_1:62974962-62974981 Msa0562800:intron 35.0%
CAAAAACGGTACATTTCACA+TGG - chr4_1:62975063-62975082 None:intergenic 35.0%
ATTAGATCATGAACGAAAGC+CGG - chr4_1:62975209-62975228 None:intergenic 35.0%
TAATGTGAGAGCTATTCTAC+AGG - chr4_1:62975340-62975359 None:intergenic 35.0%
AGCTTTCAAATAACCATCTG+GGG - chr4_1:62975457-62975476 None:intergenic 35.0%
CAGCTTTCAAATAACCATCT+GGG - chr4_1:62975458-62975477 None:intergenic 35.0%
ACAGCTTTCAAATAACCATC+TGG - chr4_1:62975459-62975478 None:intergenic 35.0%
GATGTTTATAGCGAAGTACA+AGG - chr4_1:62975649-62975668 None:intergenic 35.0%
TTGCGAAGAATCGTATGATA+TGG - chr4_1:62975869-62975888 None:intergenic 35.0%
TGCATATTCACAGGAATAGA+AGG - chr4_1:62976033-62976052 None:intergenic 35.0%
AGTTTCTGATGCATATTCAC+AGG - chr4_1:62976042-62976061 None:intergenic 35.0%
CTAGGTAGATGCATTTAACT+AGG + chr4_1:62976116-62976135 Msa0562800:intron 35.0%
GGAAACTAAACCTCAGAAAA+AGG - chr4_1:62976246-62976265 None:intergenic 35.0%
GTGATGCTTTGTATAAAACC+TGG + chr4_1:62976368-62976387 Msa0562800:intron 35.0%
AAGACCAATCAAGGGTTTAA+GGG - chr4_1:62976503-62976522 None:intergenic 35.0%
TAAGACCAATCAAGGGTTTA+AGG - chr4_1:62976504-62976523 None:intergenic 35.0%
!! TAAACCCTTGATTGGTCTTA+TGG + chr4_1:62976504-62976523 Msa0562800:intron 35.0%
! ACTTTTCACAGTACTTTTGG+TGG + chr4_1:62976877-62976896 Msa0562800:intron 35.0%
! TACTTTTGGTGGAAATCCAT+TGG + chr4_1:62976888-62976907 Msa0562800:CDS 35.0%
TTCTTTGATCACTTCAAGTG+AGG - chr4_1:62976932-62976951 None:intergenic 35.0%
TGCAACTGATGTCTTAGTAT+TGG + chr4_1:62977160-62977179 Msa0562800:intron 35.0%
GAAGATTCAGAAACAATACC+CGG + chr4_1:62977226-62977245 Msa0562800:CDS 35.0%
TAATTCAAAGCCTGATACAG+GGG - chr4_1:62977318-62977337 None:intergenic 35.0%
CTTAATTCAAAGCCTGATAC+AGG - chr4_1:62977320-62977339 None:intergenic 35.0%
!! AATTGTGTCATGTGTTGACT+TGG - chr4_1:62977372-62977391 None:intergenic 35.0%
TTTCTTACCTTATGCACAGT+GGG - chr4_1:62977409-62977428 None:intergenic 35.0%
TTGAGTTCACATGCACATTA+AGG + chr4_1:62977460-62977479 Msa0562800:intron 35.0%
TATAGCTAGTTGAGTACTTC+AGG + chr4_1:62977535-62977554 Msa0562800:intron 35.0%
! AATCCTTTGAGAGGACAAAA+AGG - chr4_1:62977768-62977787 None:intergenic 35.0%
! TTTTGTCCTCTCAAAGGATT+AGG + chr4_1:62977768-62977787 Msa0562800:intron 35.0%
AAGTAACCTAATCCTTTGAG+AGG - chr4_1:62977777-62977796 None:intergenic 35.0%
!!! TGTCCCTAATATTTTGGTCT+AGG + chr4_1:62977809-62977828 Msa0562800:intron 35.0%
TAAAAGTAATCCTTGCAGTG+CGG + chr4_1:62977840-62977859 Msa0562800:intron 35.0%
!!! GGCTTCATCTTTTTCAACAT+TGG - chr4_1:62977919-62977938 None:intergenic 35.0%
TTAACCAGATAATGAATGCC+TGG + chr4_1:62978002-62978021 Msa0562800:exon 35.0%
ATGAATGTGTAATAAGGGGG+GGG - chr4_1:62972519-62972538 None:intergenic 40.0%
! TACAGAGGAACCAGAACTTT+TGG + chr4_1:62972636-62972655 Msa0562800:CDS 40.0%
! AATCACTCCATTGGGTTGTT+TGG + chr4_1:62972881-62972900 Msa0562800:intron 40.0%
ACGGATCTTGCTAATTACCA+AGG + chr4_1:62973172-62973191 Msa0562800:intron 40.0%
GTCATTCCGGTCTAAATTGT+CGG - chr4_1:62973210-62973229 None:intergenic 40.0%
! AACATGTGTCAGTGTCATTC+CGG - chr4_1:62973223-62973242 None:intergenic 40.0%
ATCCCTCAGATGAATGAAGA+TGG + chr4_1:62973328-62973347 Msa0562800:intron 40.0%
! CTTTAAAAGATCAGGCAGAC+AGG + chr4_1:62973540-62973559 Msa0562800:CDS 40.0%
GTCAAATACTCAGCAAACAC+CGG - chr4_1:62973605-62973624 None:intergenic 40.0%
!! GAGTATTTGACAGCCTTGTT+TGG + chr4_1:62973614-62973633 Msa0562800:CDS 40.0%
CTTTCTTGCTAACTTCAACG+CGG - chr4_1:62973687-62973706 None:intergenic 40.0%
CGTTGAAGTTAGCAAGAAAG+TGG + chr4_1:62973687-62973706 Msa0562800:CDS 40.0%
AACATGAGACAATAAGAGCC+TGG - chr4_1:62973967-62973986 None:intergenic 40.0%
GCTCTTATTGTCTCATGTTG+TGG + chr4_1:62973968-62973987 Msa0562800:CDS 40.0%
TGCTTCAATGGTCGTACATT+GGG + chr4_1:62973992-62974011 Msa0562800:CDS 40.0%
CATTAAAGGACCAAAACCAC+GGG - chr4_1:62974050-62974069 None:intergenic 40.0%
GCATTAAAGGACCAAAACCA+CGG - chr4_1:62974051-62974070 None:intergenic 40.0%
TTAAGATGGCCTGGCATTAA+AGG - chr4_1:62974064-62974083 None:intergenic 40.0%
! GCGCTCGAGAAAATTTTCAA+AGG + chr4_1:62974106-62974125 Msa0562800:CDS 40.0%
! CCGCATAGCTGCATTTATTT+TGG + chr4_1:62974245-62974264 Msa0562800:CDS 40.0%
CTATGCGGTACATCATACAA+AGG - chr4_1:62974370-62974389 None:intergenic 40.0%
GTTAGACAACGAGTTCTATG+CGG - chr4_1:62974385-62974404 None:intergenic 40.0%
TAGAAACCTGCTAGGTTTCA+GGG - chr4_1:62974680-62974699 None:intergenic 40.0%
CTCTAATCTAGAAACCTGCT+AGG - chr4_1:62974688-62974707 None:intergenic 40.0%
! TTAGTCTTTGCAAGAAGGAC+TGG + chr4_1:62974770-62974789 Msa0562800:intron 40.0%
AGCACATTGAGAGAATAGTG+AGG + chr4_1:62974846-62974865 Msa0562800:intron 40.0%
GCACATTGAGAGAATAGTGA+GGG + chr4_1:62974847-62974866 Msa0562800:intron 40.0%
CTTTCAAATAACCATCTGGG+GGG - chr4_1:62975455-62975474 None:intergenic 40.0%
GCTTTCAAATAACCATCTGG+GGG - chr4_1:62975456-62975475 None:intergenic 40.0%
!! CAAACTGGATTAGCAAGAAC+AGG + chr4_1:62975528-62975547 Msa0562800:CDS 40.0%
AGCAAGAACAGGAAAAATGC+TGG + chr4_1:62975539-62975558 Msa0562800:CDS 40.0%
!! AAAAATGCTGGCTTGTGAGT+GGG + chr4_1:62975551-62975570 Msa0562800:CDS 40.0%
AGCTTGAAACTGACACTACA+TGG + chr4_1:62975788-62975807 Msa0562800:intron 40.0%
GACACTACATGGCAAGAAAT+AGG + chr4_1:62975799-62975818 Msa0562800:intron 40.0%
CTTGTCTGAGTCTTAGTCAA+TGG + chr4_1:62976060-62976079 Msa0562800:intron 40.0%
TGCATTTAACTAGGTACCAC+TGG + chr4_1:62976125-62976144 Msa0562800:intron 40.0%
! CAAACATAAGTTGGATGGTC+AGG - chr4_1:62976156-62976175 None:intergenic 40.0%
TCAGATACTAGGGAAAGCTT+TGG + chr4_1:62976302-62976321 Msa0562800:intron 40.0%
TGTATAAAACCTGGACAGCA+TGG + chr4_1:62976377-62976396 Msa0562800:intron 40.0%
CACACCATAAGACCAATCAA+GGG - chr4_1:62976511-62976530 None:intergenic 40.0%
TCACACCATAAGACCAATCA+AGG - chr4_1:62976512-62976531 None:intergenic 40.0%
AACAAAACTCCACCTTCTGT+TGG + chr4_1:62976539-62976558 Msa0562800:intron 40.0%
AGACTTCTGATTCCAACAGA+AGG - chr4_1:62976554-62976573 None:intergenic 40.0%
TTTCACTAGTTCCCATAGGA+TGG - chr4_1:62976727-62976746 None:intergenic 40.0%
GCAATTTCACTAGTTCCCAT+AGG - chr4_1:62976731-62976750 None:intergenic 40.0%
CATCGATATCTCAAAGAGAG+TGG - chr4_1:62977131-62977150 None:intergenic 40.0%
ATTGGACAGATCTACCCAAA+TGG + chr4_1:62977178-62977197 Msa0562800:intron 40.0%
TTGGACAGATCTACCCAAAT+GGG + chr4_1:62977179-62977198 Msa0562800:intron 40.0%
TTCTTACCTTATGCACAGTG+GGG - chr4_1:62977408-62977427 None:intergenic 40.0%
CTTTCTTACCTTATGCACAG+TGG - chr4_1:62977410-62977429 None:intergenic 40.0%
! CATCCTTTTTGTCCTCTCAA+AGG + chr4_1:62977762-62977781 Msa0562800:intron 40.0%
TGAGATCCAACAAGGTTCTA+AGG + chr4_1:62977864-62977883 Msa0562800:CDS 40.0%
TAGACCAGGCATTCATTATC+TGG - chr4_1:62978009-62978028 None:intergenic 40.0%
ACTGGGAATAAGTGATCTCA+AGG - chr4_1:62978159-62978178 None:intergenic 40.0%
TGTGGCAACACCAAAAGTTC+TGG - chr4_1:62972649-62972668 None:intergenic 45.0%
!! TGGGAAGATGAAGAAGCGTT+GGG - chr4_1:62972675-62972694 None:intergenic 45.0%
! TTGGGAAGATGAAGAAGCGT+TGG - chr4_1:62972676-62972695 None:intergenic 45.0%
TGGCTACTCTGCAGTTAATC+AGG + chr4_1:62973139-62973158 Msa0562800:intron 45.0%
!! GTAGCACCGACAATTTAGAC+CGG + chr4_1:62973201-62973220 Msa0562800:intron 45.0%
CCTTCAGCACCAGTATTCAT+AGG - chr4_1:62973656-62973675 None:intergenic 45.0%
! CCTATGAATACTGGTGCTGA+AGG + chr4_1:62973653-62973672 Msa0562800:CDS 45.0%
! TGCTGATGGAAACTTGTTCC+AGG + chr4_1:62973946-62973965 Msa0562800:intron 45.0%
TCATGTTGTGGCTGCTTCAA+TGG + chr4_1:62973980-62973999 Msa0562800:CDS 45.0%
CTGCTTCAATGGTCGTACAT+TGG + chr4_1:62973991-62974010 Msa0562800:CDS 45.0%
! AATGAAGCTACCCGTGGTTT+TGG + chr4_1:62974037-62974056 Msa0562800:CDS 45.0%
!! GGTTTTGGTCCTTTAATGCC+AGG + chr4_1:62974052-62974071 Msa0562800:CDS 45.0%
! CCTTTTTCTGCAGTTCAGCA+GGG - chr4_1:62974222-62974241 None:intergenic 45.0%
! TCCTTTTTCTGCAGTTCAGC+AGG - chr4_1:62974223-62974242 None:intergenic 45.0%
AGAAACCTGCTAGGTTTCAG+GGG - chr4_1:62974679-62974698 None:intergenic 45.0%
CTAGAAACCTGCTAGGTTTC+AGG - chr4_1:62974681-62974700 None:intergenic 45.0%
TGTGACAGTCCATCTTTGAC+CGG + chr4_1:62975187-62975206 Msa0562800:intron 45.0%
!! GAAAAATGCTGGCTTGTGAG+TGG + chr4_1:62975550-62975569 Msa0562800:CDS 45.0%
AGAAGTTCGTCCAGATGTAG+TGG + chr4_1:62975575-62975594 Msa0562800:CDS 45.0%
TGAACACCAACCACTACATC+TGG - chr4_1:62975588-62975607 None:intergenic 45.0%
AACATCATCCTGTCGTCACA+CGG + chr4_1:62975663-62975682 Msa0562800:intron 45.0%
TTTACTAACCGTGTGACGAC+AGG - chr4_1:62975674-62975693 None:intergenic 45.0%
CCTAGCTGCATACTTGCAAA+TGG - chr4_1:62976101-62976120 None:intergenic 45.0%
CCATTTGCAAGTATGCAGCT+AGG + chr4_1:62976098-62976117 Msa0562800:intron 45.0%
! GATACTAGGGAAAGCTTTGG+TGG + chr4_1:62976305-62976324 Msa0562800:intron 45.0%
TAAAACCTGGACAGCATGGA+AGG + chr4_1:62976381-62976400 Msa0562800:intron 45.0%
TTAAACCTTCCATGCTGTCC+AGG - chr4_1:62976389-62976408 None:intergenic 45.0%
ACCAATCAAGGGTTTAAGGG+CGG - chr4_1:62976500-62976519 None:intergenic 45.0%
CTTCTGATTCCAACAGAAGG+TGG - chr4_1:62976551-62976570 None:intergenic 45.0%
TTTGTGAATCCTCGTGTCCA+TGG + chr4_1:62976645-62976664 Msa0562800:intron 45.0%
GATCACTTCAAGTGAGGCAA+TGG - chr4_1:62976926-62976945 None:intergenic 45.0%
!! AAGAAGAGAGACTTGCTGAG+AGG + chr4_1:62976947-62976966 Msa0562800:CDS 45.0%
GAAAGTTTGTCCCCTGTATC+AGG + chr4_1:62977305-62977324 Msa0562800:CDS 45.0%
TCTTACCTTATGCACAGTGG+GGG - chr4_1:62977407-62977426 None:intergenic 45.0%
! GTACTTCAGGTTATGCGTCT+TGG + chr4_1:62977548-62977567 Msa0562800:intron 45.0%
AATTTCCAGCACATCAGCGA+GGG - chr4_1:62977890-62977909 None:intergenic 45.0%
CACAACGATCACATGCACTA+GGG - chr4_1:62977966-62977985 None:intergenic 45.0%
!! TGAAGAAGCGTTGGGTTGTG+TGG - chr4_1:62972667-62972686 None:intergenic 50.0%
ATGCAAAGGGATCAGCTGTG+TGG + chr4_1:62973081-62973100 Msa0562800:intron 50.0%
TGCAAAGGGATCAGCTGTGT+GGG + chr4_1:62973082-62973101 Msa0562800:intron 50.0%
!! GTCGGTGCTACATAAAGCCT+TGG - chr4_1:62973192-62973211 None:intergenic 50.0%
CGATACAGACATGCTGACAC+CGG - chr4_1:62973276-62973295 None:intergenic 50.0%
! CGGTGTCAGCATGTCTGTAT+CGG + chr4_1:62973274-62973293 Msa0562800:intron 50.0%
! GTCTGTATCGGTGCTTCGTA+AGG + chr4_1:62973286-62973305 Msa0562800:intron 50.0%
! GAATACTGGTGCTGAAGGTG+TGG + chr4_1:62973658-62973677 Msa0562800:CDS 50.0%
TGTGACAATGAAGCTACCCG+TGG + chr4_1:62974031-62974050 Msa0562800:CDS 50.0%
CCCTGCTGAACTGCAGAAAA+AGG + chr4_1:62974219-62974238 Msa0562800:intron 50.0%
AACCTATCCAAGGGGAAGCT+GGG + chr4_1:62974268-62974287 Msa0562800:CDS 50.0%
GAAACCTGCTAGGTTTCAGG+GGG - chr4_1:62974678-62974697 None:intergenic 50.0%
GAACGAAAGCCGGTCAAAGA+TGG - chr4_1:62975199-62975218 None:intergenic 50.0%
GTTCGTCCAGATGTAGTGGT+TGG + chr4_1:62975579-62975598 Msa0562800:intron 50.0%
! ACTAGGGAAAGCTTTGGTGG+AGG + chr4_1:62976308-62976327 Msa0562800:CDS 50.0%
TCTGCAAGAACTGCGCTAAC+TGG - chr4_1:62976341-62976360 None:intergenic 50.0%
TCCGCCCTTAAACCCTTGAT+TGG + chr4_1:62976496-62976515 Msa0562800:intron 50.0%
TCAAGACATGCAAACGGCCA+TGG - chr4_1:62976665-62976684 None:intergenic 50.0%
GACAGATCTACCCAAATGGG+AGG + chr4_1:62977182-62977201 Msa0562800:intron 50.0%
GAGAAGCTCACCTCCCATTT+GGG - chr4_1:62977195-62977214 None:intergenic 50.0%
CAAATGGGAGGTGAGCTTCT+CGG + chr4_1:62977194-62977213 Msa0562800:CDS 50.0%
ACAATACCCGGACCATGTGA+AGG + chr4_1:62977238-62977257 Msa0562800:CDS 50.0%
AGTGCGGATGAGATCCAACA+AGG + chr4_1:62977856-62977875 Msa0562800:intron 50.0%
CAATTTCCAGCACATCAGCG+AGG - chr4_1:62977891-62977910 None:intergenic 50.0%
CCACAACGATCACATGCACT+AGG - chr4_1:62977967-62977986 None:intergenic 50.0%
CCTAGTGCATGTGATCGTTG+TGG + chr4_1:62977964-62977983 Msa0562800:CDS 50.0%
ATCAGCTGTGTGGGATCCAG+AGG + chr4_1:62973091-62973110 Msa0562800:intron 55.0%
TCAGCTGTGTGGGATCCAGA+GGG + chr4_1:62973092-62973111 Msa0562800:intron 55.0%
AGATCAGGCAGACAGGCTGA+CGG + chr4_1:62973547-62973566 Msa0562800:CDS 55.0%
GAACCTATCCAAGGGGAAGC+TGG + chr4_1:62974267-62974286 Msa0562800:CDS 55.0%
ACCTATCCAAGGGGAAGCTG+GGG + chr4_1:62974269-62974288 Msa0562800:CDS 55.0%
AACATACCCCAGCTTCCCCT+TGG - chr4_1:62974278-62974297 None:intergenic 55.0%
TTCTCCCCCTGAAACCTAGC+AGG + chr4_1:62974671-62974690 Msa0562800:intron 55.0%
CAGGTGAAAATCCCCCCAGA+TGG + chr4_1:62975441-62975460 Msa0562800:intron 55.0%
GGATGGTCAGGTCTATCCAG+TGG - chr4_1:62976144-62976163 None:intergenic 55.0%
! ATGGCAACTGCACTGGCCAA+TGG - chr4_1:62976907-62976926 None:intergenic 55.0%
TGAGGCAATGGCAACTGCAC+TGG - chr4_1:62976914-62976933 None:intergenic 55.0%
CGAGAAGCTCACCTCCCATT+TGG - chr4_1:62977196-62977215 None:intergenic 55.0%
ATACCCGGACCATGTGAAGG+AGG + chr4_1:62977241-62977260 Msa0562800:CDS 55.0%
CGGGGAAGAGGACTGTTCAT+TGG + chr4_1:62977266-62977285 Msa0562800:CDS 55.0%
TCACTCCCCCACTGTGCATA+AGG + chr4_1:62977399-62977418 Msa0562800:CDS 55.0%
TGGATCTCATCCGCACTGCA+AGG - chr4_1:62977853-62977872 None:intergenic 55.0%
CGAGGGCCTTAGAACCTTGT+TGG - chr4_1:62977873-62977892 None:intergenic 55.0%
! GCTGGAGGAGCAGCATCTTT+TGG - chr4_1:62977940-62977959 None:intergenic 55.0%
AAAGATGCTGCTCCTCCAGC+TGG + chr4_1:62977940-62977959 Msa0562800:CDS 55.0%
CGTTGTGGTCGAGTCGTGTA+TGG + chr4_1:62977979-62977998 Msa0562800:CDS 55.0%
ACCCCAGCTTCCCCTTGGAT+AGG - chr4_1:62974273-62974292 None:intergenic 60.0%
TGCAAACGGCCATGGACACG+AGG - chr4_1:62976657-62976676 None:intergenic 60.0%
GCACCTCCTTCACATGGTCC+GGG - chr4_1:62977247-62977266 None:intergenic 60.0%
CGCACCTCCTTCACATGGTC+CGG - chr4_1:62977248-62977267 None:intergenic 60.0%
CGGACCATGTGAAGGAGGTG+CGG + chr4_1:62977246-62977265 Msa0562800:CDS 60.0%
! GGACCATGTGAAGGAGGTGC+GGG + chr4_1:62977247-62977266 Msa0562800:CDS 60.0%
! GACCATGTGAAGGAGGTGCG+GGG + chr4_1:62977248-62977267 Msa0562800:CDS 60.0%
TTCCCCGCACCTCCTTCACA+TGG - chr4_1:62977253-62977272 None:intergenic 60.0%
TAAGGCCCTCGCTGATGTGC+TGG + chr4_1:62977882-62977901 Msa0562800:CDS 60.0%
TCACATGCACTAGGGCCAGC+TGG - chr4_1:62977958-62977977 None:intergenic 60.0%
! GTGAAGGAGGTGCGGGGAAG+AGG + chr4_1:62977254-62977273 Msa0562800:CDS 65.0%
CATGCACTAGGGCCAGCTGG+AGG - chr4_1:62977955-62977974 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 62972516 62978193 62972516 ID=Msa0562800;Name=Msa0562800
chr4_1 mRNA 62972516 62978193 62972516 ID=Msa0562800-mRNA-1;Parent=Msa0562800;Name=Msa0562800-mRNA-1;_AED=0.03;_eAED=0.03;_QI=78|0.77|0.8|1|0.66|0.8|10|188|436
chr4_1 exon 62972516 62972733 62972516 ID=Msa0562800-mRNA-1:exon:19861;Parent=Msa0562800-mRNA-1
chr4_1 exon 62973052 62973097 62973052 ID=Msa0562800-mRNA-1:exon:19862;Parent=Msa0562800-mRNA-1
chr4_1 exon 62973512 62973742 62973512 ID=Msa0562800-mRNA-1:exon:19863;Parent=Msa0562800-mRNA-1
chr4_1 exon 62973968 62974127 62973968 ID=Msa0562800-mRNA-1:exon:19864;Parent=Msa0562800-mRNA-1
chr4_1 exon 62974235 62974290 62974235 ID=Msa0562800-mRNA-1:exon:19865;Parent=Msa0562800-mRNA-1
chr4_1 exon 62975444 62975596 62975444 ID=Msa0562800-mRNA-1:exon:19866;Parent=Msa0562800-mRNA-1
chr4_1 exon 62976306 62976367 62976306 ID=Msa0562800-mRNA-1:exon:19867;Parent=Msa0562800-mRNA-1
chr4_1 exon 62976888 62976968 62976888 ID=Msa0562800-mRNA-1:exon:19868;Parent=Msa0562800-mRNA-1
chr4_1 exon 62977187 62977420 62977187 ID=Msa0562800-mRNA-1:exon:19869;Parent=Msa0562800-mRNA-1
chr4_1 exon 62977858 62978193 62977858 ID=Msa0562800-mRNA-1:exon:19870;Parent=Msa0562800-mRNA-1
chr4_1 five_prime_UTR 62972516 62972593 62972516 ID=Msa0562800-mRNA-1:five_prime_utr;Parent=Msa0562800-mRNA-1
chr4_1 CDS 62972594 62972733 62972594 ID=Msa0562800-mRNA-1:cds;Parent=Msa0562800-mRNA-1
chr4_1 CDS 62973052 62973097 62973052 ID=Msa0562800-mRNA-1:cds;Parent=Msa0562800-mRNA-1
chr4_1 CDS 62973512 62973742 62973512 ID=Msa0562800-mRNA-1:cds;Parent=Msa0562800-mRNA-1
chr4_1 CDS 62973968 62974127 62973968 ID=Msa0562800-mRNA-1:cds;Parent=Msa0562800-mRNA-1
chr4_1 CDS 62974235 62974290 62974235 ID=Msa0562800-mRNA-1:cds;Parent=Msa0562800-mRNA-1
chr4_1 CDS 62975444 62975596 62975444 ID=Msa0562800-mRNA-1:cds;Parent=Msa0562800-mRNA-1
chr4_1 CDS 62976306 62976367 62976306 ID=Msa0562800-mRNA-1:cds;Parent=Msa0562800-mRNA-1
chr4_1 CDS 62976888 62976968 62976888 ID=Msa0562800-mRNA-1:cds;Parent=Msa0562800-mRNA-1
chr4_1 CDS 62977187 62977420 62977187 ID=Msa0562800-mRNA-1:cds;Parent=Msa0562800-mRNA-1
chr4_1 CDS 62977858 62978005 62977858 ID=Msa0562800-mRNA-1:cds;Parent=Msa0562800-mRNA-1
chr4_1 three_prime_UTR 62978006 62978193 62978006 ID=Msa0562800-mRNA-1:three_prime_utr;Parent=Msa0562800-mRNA-1
Gene Sequence

>Msa0562800

ATGGCTTCAACAAGACAAGTACAGTGTTTGATGCGAAGATTTTACAGAGGAACCAGAACTTTTGGTGTTGCCACACAACCCAACGCTTCTTCATCTTCCCAAACAATCATCGACAAAGAATTTCAACACAGTGCCCACAATTACCATCCACTTCCTATTGTATTTGCTCATGCAAAGGGATCAGCTGGACATTGTCATCCTAAAATTCTTAAAGCTTTAAAAGATCAGGCAGACAGGCTGACGGTGAGCTCACGAGCTTTCTACAATGATCGTTTTCCGGTGTTTGCTGAGTATTTGACAGCCTTGTTTGGTTATGATATGGTACTTCCTATGAATACTGGTGCTGAAGGTGTGGAAACCGCGTTGAAGTTAGCAAGAAAGTGGGGTTATGAAAAGAAAAAAATTCCCAACAATGAGGCTCTTATTGTCTCATGTTGTGGCTGCTTCAATGGTCGTACATTGGGTGTCATATCTATGAGTTGTGACAATGAAGCTACCCGTGGTTTTGGTCCTTTAATGCCAGGCCATCTTAAAGTTGATTTTGGTGATGCAGAAGCGCTCGAGAAAATTTTCAAAGAAAAAGGAGACCGCATAGCTGCATTTATTTTGGAACCTATCCAAGGGGAAGCTGGGGTGAAAATCCCCCCAGATGGTTATTTGAAAGCTGTTAGAGATCTTTGTTCCAAATATAACGTGTTGATGATTGCTGATGAAATACAAACTGGATTAGCAAGAACAGGAAAAATGCTGGCTTGTGAGTGGGAAGAAGTTCGTCCAGATGTAGTGATACTAGGGAAAGCTTTGGTGGAGGAATTATTCCAGTTAGCGCAGTTCTTGCAGACAAAGAATACTTTTGGTGGAAATCCATTGGCCAGTGCAGTTGCCATTGCCTCACTTGAAGTGATCAAAGAAGAGAGACTTGCTGAGAGATCTACCCAAATGGGAGGTGAGCTTCTCGGTCTGCTGCAGAAGATTCAGAAACAATACCCGGACCATGTGAAGGAGGTGCGGGGAAGAGGACTGTTCATTGGAGTCGAGCTTAACAGCGAAAGTTTGTCCCCTGTATCAGGCTTTGAATTAAGTGAAAAATTGAAGGATAGAGGAGTTCTTGCCAAGTCAACACATGACACAATTATTCGCTTCACTCCCCCACTGTGCATAAGTGCGGATGAGATCCAACAAGGTTCTAAGGCCCTCGCTGATGTGCTGGAAATTGATCTACCAATGTTGAAAAAGATGAAGCCAAAAGATGCTGCTCCTCCAGCTGGCCCTAGTGCATGTGATCGTTGTGGTCGAGTCGTGTATGGTTAA

Protein sequence

>Msa0562800

MASTRQVQCLMRRFYRGTRTFGVATQPNASSSSQTIIDKEFQHSAHNYHPLPIVFAHAKGSAGHCHPKILKALKDQADRLTVSSRAFYNDRFPVFAEYLTALFGYDMVLPMNTGAEGVETALKLARKWGYEKKKIPNNEALIVSCCGCFNGRTLGVISMSCDNEATRGFGPLMPGHLKVDFGDAEALEKIFKEKGDRIAAFILEPIQGEAGVKIPPDGYLKAVRDLCSKYNVLMIADEIQTGLARTGKMLACEWEEVRPDVVILGKALVEELFQLAQFLQTKNTFGGNPLASAVAIASLEVIKEERLAERSTQMGGELLGLLQKIQKQYPDHVKEVRGRGLFIGVELNSESLSPVSGFELSEKLKDRGVLAKSTHDTIIRFTPPLCISADEIQQGSKALADVLEIDLPMLKKMKPKDAAPPAGPSACDRCGRVVYG*