Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0562800 | GAU42281.1 | 86.596 | 470 | 29 | 3 | 1 | 436 | 1 | 470 | 0.0 | 819 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0562800 | sp|Q9FNK4|OAT_ARATH | 63.972 | 433 | 122 | 3 | 36 | 435 | 43 | 474 | 0.0 | 573 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0562800 | A0A2Z6NEP6 | 86.596 | 470 | 29 | 3 | 1 | 436 | 1 | 470 | 0.0 | 819 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0086190 | Msa0562800 | 0.814407 | 1.565439e-51 | -8.615850e-47 |
Msa0268070 | Msa0562800 | 0.832158 | 1.108565e-55 | -8.615850e-47 |
Msa0547440 | Msa0562800 | 0.800517 | 1.388680e-48 | -8.615850e-47 |
Msa0562800 | Msa0577370 | 0.939677 | 8.498135e-100 | -8.615850e-47 |
Msa0562800 | Msa0617040 | 0.904256 | 1.483896e-79 | -8.615850e-47 |
Msa0562800 | Msa0656100 | 0.903613 | 2.895974e-79 | -8.615850e-47 |
Msa0562800 | Msa0697020 | 0.856656 | 2.775679e-62 | -8.615850e-47 |
Msa0562800 | Msa0708600 | 0.808615 | 2.839416e-50 | -8.615850e-47 |
Msa0562800 | Msa0776170 | 0.803751 | 3.002573e-49 | -8.615850e-47 |
Msa0562800 | Msa0813620 | 0.802891 | 4.523795e-49 | -8.615850e-47 |
Msa0562800 | Msa1217950 | 0.806837 | 6.775226e-50 | -8.615850e-47 |
Msa0562800 | Msa1219790 | 0.840475 | 8.505308e-58 | -8.615850e-47 |
Msa0562800 | Msa1267080 | 0.831661 | 1.470943e-55 | -8.615850e-47 |
Msa0562800 | Msa1401550 | 0.814425 | 1.550601e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0562800 | MtrunA17_Chr8g0376561 | 88.273 | 469 | 22 | 2 | 1 | 436 | 1 | 469 | 0.0 | 817 |
Msa0562800 | MtrunA17_Chr7g0233361 | 30.340 | 412 | 234 | 10 | 33 | 405 | 68 | 465 | 1.31e-44 | 161 |
Msa0562800 | MtrunA17_Chr8g0382871 | 31.088 | 386 | 213 | 16 | 61 | 410 | 113 | 481 | 1.64e-37 | 142 |
Msa0562800 | MtrunA17_Chr7g0244421 | 31.044 | 364 | 204 | 14 | 63 | 391 | 115 | 466 | 9.64e-36 | 137 |
Msa0562800 | MtrunA17_Chr4g0038831 | 25.740 | 338 | 183 | 11 | 111 | 394 | 166 | 489 | 1.64e-23 | 102 |
Msa0562800 | MtrunA17_Chr3g0145711 | 28.214 | 280 | 166 | 7 | 63 | 319 | 108 | 375 | 2.48e-18 | 87.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0562800 | AT5G46180.1 | 63.972 | 433 | 122 | 3 | 36 | 435 | 43 | 474 | 0.0 | 573 |
Msa0562800 | AT1G80600.1 | 28.780 | 410 | 245 | 8 | 30 | 403 | 55 | 453 | 9.50e-45 | 162 |
Msa0562800 | AT4G39660.2 | 30.311 | 386 | 216 | 15 | 61 | 410 | 33 | 401 | 3.90e-38 | 143 |
Msa0562800 | AT4G39660.1 | 30.311 | 386 | 216 | 15 | 61 | 410 | 108 | 476 | 1.41e-37 | 143 |
Msa0562800 | AT2G38400.1 | 29.558 | 362 | 211 | 11 | 63 | 391 | 112 | 462 | 1.46e-33 | 132 |
Msa0562800 | AT2G38400.2 | 29.121 | 364 | 214 | 11 | 61 | 391 | 110 | 462 | 1.58e-33 | 132 |
Msa0562800 | AT3G08860.1 | 28.346 | 381 | 218 | 14 | 61 | 404 | 113 | 475 | 3.67e-32 | 127 |
Msa0562800 | AT3G08860.2 | 28.533 | 368 | 212 | 13 | 61 | 391 | 113 | 466 | 5.16e-32 | 127 |
Msa0562800 | AT3G22200.1 | 29.482 | 251 | 146 | 7 | 173 | 394 | 231 | 479 | 3.85e-24 | 105 |
Msa0562800 | AT3G22200.2 | 29.482 | 251 | 146 | 7 | 173 | 394 | 240 | 488 | 4.74e-24 | 104 |
Msa0562800 | AT5G63570.2 | 27.336 | 289 | 174 | 8 | 63 | 327 | 51 | 327 | 1.01e-16 | 82.0 |
Msa0562800 | AT5G63570.1 | 27.336 | 289 | 174 | 8 | 63 | 327 | 114 | 390 | 1.29e-16 | 82.4 |
Msa0562800 | AT3G48730.1 | 26.298 | 289 | 177 | 8 | 63 | 327 | 112 | 388 | 4.45e-15 | 77.4 |
Find 121 sgRNAs with CRISPR-Local
Find 344 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCGCATAGCTGCATTTATTT+TGG | 0.157532 | 4_1:+62974245 | Msa0562800:CDS |
GGCCATCTTAAAGTTGATTT+TGG | 0.199551 | 4_1:+62974073 | Msa0562800:CDS |
TTAAGATGGCCTGGCATTAA+AGG | 0.213274 | 4_1:-62974061 | None:intergenic |
GCTGGAGGAGCAGCATCTTT+TGG | 0.213355 | 4_1:-62977937 | None:intergenic |
AATCATCAACACGTTATATT+TGG | 0.227981 | 4_1:-62975493 | None:intergenic |
ATATGAATGAATGTGTAATA+AGG | 0.263883 | 4_1:-62972522 | None:intergenic |
TAGACCAGGCATTCATTATC+TGG | 0.272689 | 4_1:-62978006 | None:intergenic |
TTAATTTCATAAATATGATA+TGG | 0.296649 | 4_1:-62978118 | None:intergenic |
TATGAATGAATGTGTAATAA+GGG | 0.308089 | 4_1:-62972521 | None:intergenic |
GAAAGTTTGTCCCCTGTATC+AGG | 0.309360 | 4_1:+62977305 | Msa0562800:CDS |
AATGAAGCTACCCGTGGTTT+TGG | 0.314723 | 4_1:+62974037 | Msa0562800:CDS |
ATTCTTTGTCGATGATTGTT+TGG | 0.326759 | 4_1:-62972692 | None:intergenic |
CGCACCTCCTTCACATGGTC+CGG | 0.342009 | 4_1:-62977245 | None:intergenic |
CGAGAAGCTCACCTCCCATT+TGG | 0.348974 | 4_1:-62977193 | None:intergenic |
CTTAATTCAAAGCCTGATAC+AGG | 0.361779 | 4_1:-62977317 | None:intergenic |
TCTGCAAGAACTGCGCTAAC+TGG | 0.362917 | 4_1:-62976338 | None:intergenic |
TACAGAGGAACCAGAACTTT+TGG | 0.363782 | 4_1:+62972636 | Msa0562800:CDS |
TCATGTTGTGGCTGCTTCAA+TGG | 0.367473 | 4_1:+62973980 | Msa0562800:CDS |
CATAGTTATACCTCATTGTT+GGG | 0.368104 | 4_1:-62973731 | None:intergenic |
AGCCTTGTTTGGTTATGATA+TGG | 0.380865 | 4_1:+62973625 | Msa0562800:CDS |
TTCTTTGTCGATGATTGTTT+GGG | 0.389344 | 4_1:-62972691 | None:intergenic |
TGTGGCAACACCAAAAGTTC+TGG | 0.395603 | 4_1:-62972646 | None:intergenic |
GAACCTATCCAAGGGGAAGC+TGG | 0.400196 | 4_1:+62974267 | Msa0562800:CDS |
TCATAGTTATACCTCATTGT+TGG | 0.402470 | 4_1:-62973732 | None:intergenic |
CGAGGGCCTTAGAACCTTGT+TGG | 0.409141 | 4_1:-62977870 | None:intergenic |
TGAGATCCAACAAGGTTCTA+AGG | 0.410990 | 4_1:+62977864 | Msa0562800:CDS |
ACAGCTTTCAAATAACCATC+TGG | 0.413613 | 4_1:-62975456 | None:intergenic |
GAGAAGCTCACCTCCCATTT+GGG | 0.418819 | 4_1:-62977192 | None:intergenic |
TGCTTCAATGGTCGTACATT+GGG | 0.424592 | 4_1:+62973992 | Msa0562800:CDS |
AAAGATGCTGCTCCTCCAGC+TGG | 0.425140 | 4_1:+62977940 | Msa0562800:CDS |
GAGTATTTGACAGCCTTGTT+TGG | 0.427807 | 4_1:+62973614 | Msa0562800:CDS |
TCTTAAAGCTTTAAAAGATC+AGG | 0.428054 | 4_1:+62973532 | Msa0562800:CDS |
TTTGCATGAGCAAATACAAT+AGG | 0.428807 | 4_1:-62973065 | None:intergenic |
TGAACACCAACCACTACATC+TGG | 0.440669 | 4_1:-62975585 | None:intergenic |
CCTTCAGCACCAGTATTCAT+AGG | 0.441808 | 4_1:-62973653 | None:intergenic |
GTGAAGGAGGTGCGGGGAAG+AGG | 0.443048 | 4_1:+62977254 | Msa0562800:CDS |
TAAGGCCCTCGCTGATGTGC+TGG | 0.445290 | 4_1:+62977882 | Msa0562800:CDS |
CGTTGTGGTCGAGTCGTGTA+TGG | 0.450567 | 4_1:+62977979 | Msa0562800:CDS |
ATTGCTGATGAAATACAAAC+TGG | 0.456192 | 4_1:+62975513 | Msa0562800:CDS |
CGGGGAAGAGGACTGTTCAT+TGG | 0.461273 | 4_1:+62977266 | Msa0562800:CDS |
AACCTATCCAAGGGGAAGCT+GGG | 0.467176 | 4_1:+62974268 | Msa0562800:CDS |
GATACTAGGGAAAGCTTTGG+TGG | 0.472093 | 4_1:+62976305 | Msa0562800:intron |
ATTGTATTTGCTCATGCAAA+GGG | 0.473811 | 4_1:+62973068 | Msa0562800:CDS |
GGACCATGTGAAGGAGGTGC+GGG | 0.476342 | 4_1:+62977247 | Msa0562800:CDS |
TCAGATACTAGGGAAAGCTT+TGG | 0.477688 | 4_1:+62976302 | Msa0562800:intron |
CAAACTGGATTAGCAAGAAC+AGG | 0.479961 | 4_1:+62975528 | Msa0562800:CDS |
ATTGGACAGATCTACCCAAA+TGG | 0.483780 | 4_1:+62977178 | Msa0562800:intron |
ATGAATGAATGTGTAATAAG+GGG | 0.487314 | 4_1:-62972520 | None:intergenic |
CTTTAAAAGATCAGGCAGAC+AGG | 0.501503 | 4_1:+62973540 | Msa0562800:CDS |
CAAATGGGAGGTGAGCTTCT+CGG | 0.504493 | 4_1:+62977194 | Msa0562800:CDS |
AACATACCCCAGCTTCCCCT+TGG | 0.504988 | 4_1:-62974275 | None:intergenic |
CGTTGAAGTTAGCAAGAAAG+TGG | 0.505236 | 4_1:+62973687 | Msa0562800:CDS |
CCACAACGATCACATGCACT+AGG | 0.505325 | 4_1:-62977964 | None:intergenic |
CTGCTTCAATGGTCGTACAT+TGG | 0.506187 | 4_1:+62973991 | Msa0562800:CDS |
TTGGGAAGATGAAGAAGCGT+TGG | 0.508848 | 4_1:-62972673 | None:intergenic |
TTTCTTACCTTATGCACAGT+GGG | 0.509433 | 4_1:-62977406 | None:intergenic |
ATGGCAACTGCACTGGCCAA+TGG | 0.511220 | 4_1:-62976904 | None:intergenic |
TGAGGCAATGGCAACTGCAC+TGG | 0.516585 | 4_1:-62976911 | None:intergenic |
CACCAAAATCAACTTTAAGA+TGG | 0.516646 | 4_1:-62974075 | None:intergenic |
TATTGTATTTGCTCATGCAA+AGG | 0.517613 | 4_1:+62973067 | Msa0562800:CDS |
GCTCTTATTGTCTCATGTTG+TGG | 0.519417 | 4_1:+62973968 | Msa0562800:CDS |
AAATCAACTTTAAGATGGCC+TGG | 0.519591 | 4_1:-62974070 | None:intergenic |
TTACACATAACATCAATCAA+TGG | 0.520997 | 4_1:+62972575 | Msa0562800:exon |
TCACATGCACTAGGGCCAGC+TGG | 0.522239 | 4_1:-62977955 | None:intergenic |
CAGCTTTCAAATAACCATCT+GGG | 0.525779 | 4_1:-62975455 | None:intergenic |
TTGGACAGATCTACCCAAAT+GGG | 0.526655 | 4_1:+62977179 | Msa0562800:intron |
TGAGCAAATACAATAGGAAG+TGG | 0.526855 | 4_1:-62973059 | None:intergenic |
ATGATGATGTAAATCAAAGT+TGG | 0.528709 | 4_1:-62972552 | None:intergenic |
ATGGTACTTCCTATGAATAC+TGG | 0.531481 | 4_1:+62973644 | Msa0562800:CDS |
GCACCTCCTTCACATGGTCC+GGG | 0.537138 | 4_1:-62977244 | None:intergenic |
TTCTTTGATCACTTCAAGTG+AGG | 0.543995 | 4_1:-62976929 | None:intergenic |
TTAACCAGATAATGAATGCC+TGG | 0.546110 | 4_1:+62978002 | Msa0562800:exon |
TGGGAAGATGAAGAAGCGTT+GGG | 0.548907 | 4_1:-62972672 | None:intergenic |
GATCACTTCAAGTGAGGCAA+TGG | 0.551674 | 4_1:-62976923 | None:intergenic |
TGGTTAGAAATAGACAGCAC+TGG | 0.552720 | 4_1:-62978174 | None:intergenic |
AATTGTGTCATGTGTTGACT+TGG | 0.561328 | 4_1:-62977369 | None:intergenic |
TTCCCCGCACCTCCTTCACA+TGG | 0.564937 | 4_1:-62977250 | None:intergenic |
AATGAATGTGTAATAAGGGG+GGG | 0.575370 | 4_1:-62972517 | None:intergenic |
CAAATACAATAGGAAGTGGA+TGG | 0.580722 | 4_1:-62973055 | None:intergenic |
TGAATGAATGTGTAATAAGG+GGG | 0.581614 | 4_1:-62972519 | None:intergenic |
GTCAAATACTCAGCAAACAC+CGG | 0.582762 | 4_1:-62973602 | None:intergenic |
GAATACTGGTGCTGAAGGTG+TGG | 0.583184 | 4_1:+62973658 | Msa0562800:CDS |
ACCCCAGCTTCCCCTTGGAT+AGG | 0.586113 | 4_1:-62974270 | None:intergenic |
ACCTATCCAAGGGGAAGCTG+GGG | 0.586910 | 4_1:+62974269 | Msa0562800:CDS |
ACTGGGAATAAGTGATCTCA+AGG | 0.588655 | 4_1:-62978156 | None:intergenic |
GAATGAATGTGTAATAAGGG+GGG | 0.597169 | 4_1:-62972518 | None:intergenic |
AGCTTTCAAATAACCATCTG+GGG | 0.599511 | 4_1:-62975454 | None:intergenic |
CGGACCATGTGAAGGAGGTG+CGG | 0.603381 | 4_1:+62977246 | Msa0562800:CDS |
GGTTAGAAATAGACAGCACT+GGG | 0.604578 | 4_1:-62978173 | None:intergenic |
TAATTCAAAGCCTGATACAG+GGG | 0.605478 | 4_1:-62977315 | None:intergenic |
GTTGAAGTTAGCAAGAAAGT+GGG | 0.607885 | 4_1:+62973688 | Msa0562800:CDS |
TTAATTCAAAGCCTGATACA+GGG | 0.608427 | 4_1:-62977316 | None:intergenic |
AGAAGTTCGTCCAGATGTAG+TGG | 0.615199 | 4_1:+62975575 | Msa0562800:CDS |
TGAAGAAGCGTTGGGTTGTG+TGG | 0.618995 | 4_1:-62972664 | None:intergenic |
CACAACGATCACATGCACTA+GGG | 0.624398 | 4_1:-62977963 | None:intergenic |
ACTAGGGAAAGCTTTGGTGG+AGG | 0.625217 | 4_1:+62976308 | Msa0562800:CDS |
AATTTCCAGCACATCAGCGA+GGG | 0.626318 | 4_1:-62977887 | None:intergenic |
GACCATGTGAAGGAGGTGCG+GGG | 0.627725 | 4_1:+62977248 | Msa0562800:CDS |
GCATTAAAGGACCAAAACCA+CGG | 0.628989 | 4_1:-62974048 | None:intergenic |
TACCATATCATAACCAAACA+AGG | 0.631313 | 4_1:-62973627 | None:intergenic |
ACAATACCCGGACCATGTGA+AGG | 0.644513 | 4_1:+62977238 | Msa0562800:CDS |
GCTTTCAAATAACCATCTGG+GGG | 0.649011 | 4_1:-62975453 | None:intergenic |
TCTTACCTTATGCACAGTGG+GGG | 0.652538 | 4_1:-62977404 | None:intergenic |
CTTTCTTACCTTATGCACAG+TGG | 0.652810 | 4_1:-62977407 | None:intergenic |
CATTAAAGGACCAAAACCAC+GGG | 0.654497 | 4_1:-62974047 | None:intergenic |
CCTATGAATACTGGTGCTGA+AGG | 0.655355 | 4_1:+62973653 | Msa0562800:CDS |
TTCTTACCTTATGCACAGTG+GGG | 0.660148 | 4_1:-62977405 | None:intergenic |
GAAGATTCAGAAACAATACC+CGG | 0.661569 | 4_1:+62977226 | Msa0562800:CDS |
GACAGATCTACCCAAATGGG+AGG | 0.666226 | 4_1:+62977182 | Msa0562800:intron |
CCAAAATAAATGCAGCTATG+CGG | 0.671952 | 4_1:-62974245 | None:intergenic |
AGATCAGGCAGACAGGCTGA+CGG | 0.672284 | 4_1:+62973547 | Msa0562800:CDS |
CATGCACTAGGGCCAGCTGG+AGG | 0.674851 | 4_1:-62977952 | None:intergenic |
ATACCCGGACCATGTGAAGG+AGG | 0.676758 | 4_1:+62977241 | Msa0562800:CDS |
AAGAAGAGAGACTTGCTGAG+AGG | 0.679464 | 4_1:+62976947 | Msa0562800:CDS |
TGTGACAATGAAGCTACCCG+TGG | 0.679963 | 4_1:+62974031 | Msa0562800:CDS |
CCTAGTGCATGTGATCGTTG+TGG | 0.687700 | 4_1:+62977964 | Msa0562800:CDS |
TTGAAGTTAGCAAGAAAGTG+GGG | 0.692526 | 4_1:+62973689 | Msa0562800:CDS |
AGTGCGGATGAGATCCAACA+AGG | 0.696962 | 4_1:+62977856 | Msa0562800:intron |
CTTTCAAATAACCATCTGGG+GGG | 0.711042 | 4_1:-62975452 | None:intergenic |
CAATTTCCAGCACATCAGCG+AGG | 0.712817 | 4_1:-62977888 | None:intergenic |
CTTTCTTGCTAACTTCAACG+CGG | 0.721978 | 4_1:-62973684 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTATTAGTTTAATATATGA+AGG | - | chr4_1:62972847-62972866 | None:intergenic | 10.0% |
!!! | AAATATATTGATTTTTTATC+TGG | + | chr4_1:62973119-62973138 | Msa0562800:intron | 10.0% |
!!! | TTTTTTATTCCTTAATTTTT+GGG | + | chr4_1:62973434-62973453 | Msa0562800:intron | 10.0% |
!!! | ATAAGTATTCTTTTTTTTTT+TGG | - | chr4_1:62974329-62974348 | None:intergenic | 10.0% |
!! | AATATTAATGTTATGAAAAA+TGG | + | chr4_1:62975283-62975302 | Msa0562800:intron | 10.0% |
!! | ATATTAATGTTATGAAAAAT+GGG | + | chr4_1:62975284-62975303 | Msa0562800:intron | 10.0% |
!!! | ATTTTAATGAATGAAATTAT+CGG | - | chr4_1:62976793-62976812 | None:intergenic | 10.0% |
!! | AATTAATTGTTTATTAAAGA+AGG | + | chr4_1:62976815-62976834 | Msa0562800:intron | 10.0% |
!! | TTGAATAAATTTATTTCATT+AGG | + | chr4_1:62977013-62977032 | Msa0562800:intron | 10.0% |
!! | TTAATTTCATAAATATGATA+TGG | - | chr4_1:62978121-62978140 | None:intergenic | 10.0% |
!!! | TTTTCTTATATTATTATCAC+CGG | + | chr4_1:62973254-62973273 | Msa0562800:intron | 15.0% |
!! | CAAAAATTAAGGAATAAAAA+AGG | - | chr4_1:62973435-62973454 | None:intergenic | 15.0% |
!!! | CTTTTTTATTCCTTAATTTT+TGG | + | chr4_1:62973433-62973452 | Msa0562800:intron | 15.0% |
!!! | TTTAAAGCTTTAAGAATTTT+AGG | - | chr4_1:62973527-62973546 | None:intergenic | 15.0% |
!! | ATAAGAATAGAAAATAGAAT+CGG | - | chr4_1:62974625-62974644 | None:intergenic | 15.0% |
!! | AAACTATTATACTTCATAAA+TGG | - | chr4_1:62975119-62975138 | None:intergenic | 15.0% |
!! | AATAAAAAAAATCAGTTTGA+CGG | - | chr4_1:62975255-62975274 | None:intergenic | 15.0% |
!! | TCTGAACTTAAATTATTAAA+AGG | - | chr4_1:62975730-62975749 | None:intergenic | 15.0% |
!!! | TTTTAATAATTTAAGTTCAG+AGG | + | chr4_1:62975729-62975748 | Msa0562800:intron | 15.0% |
!! | TACAGAATAAAAAAGAAAAA+GGG | - | chr4_1:62976222-62976241 | None:intergenic | 15.0% |
!! | TTACAGAATAAAAAAGAAAA+AGG | - | chr4_1:62976223-62976242 | None:intergenic | 15.0% |
!! | AAAAATAAATAACCATTACA+AGG | - | chr4_1:62976693-62976712 | None:intergenic | 15.0% |
!! | TATGAATGAATGTGTAATAA+GGG | - | chr4_1:62972524-62972543 | None:intergenic | 20.0% |
!! | ATATGAATGAATGTGTAATA+AGG | - | chr4_1:62972525-62972544 | None:intergenic | 20.0% |
!! | TTAATCAGGTATAAATTGAA+CGG | + | chr4_1:62973153-62973172 | Msa0562800:intron | 20.0% |
!! | ATCAAGATATTACAACTATT+AGG | - | chr4_1:62973769-62973788 | None:intergenic | 20.0% |
!! | TCTCATTTAAAAAATCCAAA+TGG | - | chr4_1:62973892-62973911 | None:intergenic | 20.0% |
!!! | TGGATTTTTTAAATGAGATT+CGG | + | chr4_1:62973894-62973913 | Msa0562800:intron | 20.0% |
!!! | GTCATTTGTTTTATCTTAAA+TGG | + | chr4_1:62974418-62974437 | Msa0562800:intron | 20.0% |
!! | ATAGAAAATAGAATCAGTTA+GGG | - | chr4_1:62974619-62974638 | None:intergenic | 20.0% |
!! | AATAGAAAATAGAATCAGTT+AGG | - | chr4_1:62974620-62974639 | None:intergenic | 20.0% |
!! | ATTCTGTTATTATGAAATGT+TGG | + | chr4_1:62974880-62974899 | Msa0562800:intron | 20.0% |
!! | TAACGTCATATAAAAAAATG+TGG | - | chr4_1:62975411-62975430 | None:intergenic | 20.0% |
!!! | ATGACGTTATATTTTTTTAC+AGG | + | chr4_1:62975422-62975441 | Msa0562800:intron | 20.0% |
!! | AGGAAAAACTAGATATAATA+TGG | - | chr4_1:62976013-62976032 | None:intergenic | 20.0% |
!! | AAGAAATTAGTGGTATAAAA+AGG | - | chr4_1:62976267-62976286 | None:intergenic | 20.0% |
!! | AAGAAAGTTAAAGAAATTAG+TGG | - | chr4_1:62976277-62976296 | None:intergenic | 20.0% |
!!! | TTTGATTTGATTAAGTTGAA+AGG | + | chr4_1:62976591-62976610 | Msa0562800:intron | 20.0% |
!! | TAAAAAAAAAATCCATCCTA+TGG | + | chr4_1:62976712-62976731 | Msa0562800:intron | 20.0% |
!! | AAAAAAAAAATCCATCCTAT+GGG | + | chr4_1:62976713-62976732 | Msa0562800:intron | 20.0% |
!! | GAAAAGTAACAGAAAAAAAA+AGG | - | chr4_1:62976864-62976883 | None:intergenic | 20.0% |
!! | TGAATTAAGTGAAAAATTGA+AGG | + | chr4_1:62977331-62977350 | Msa0562800:CDS | 20.0% |
!! | TATAGTGAAAAATGAAAACA+AGG | - | chr4_1:62977578-62977597 | None:intergenic | 20.0% |
!! | AATTATTGAAATTGAAAGCT+AGG | + | chr4_1:62977603-62977622 | Msa0562800:intron | 20.0% |
!!! | TTTTATAAAATTCATAGACC+AGG | - | chr4_1:62978023-62978042 | None:intergenic | 20.0% |
!!! | ACTTATATTTTACTTTTGCT+TGG | + | chr4_1:62978042-62978061 | Msa0562800:three_prime_UTR | 20.0% |
!! | TGAAATTAAAAAATGTCACT+AGG | + | chr4_1:62978132-62978151 | Msa0562800:three_prime_UTR | 20.0% |
! | ATGAATGAATGTGTAATAAG+GGG | - | chr4_1:62972523-62972542 | None:intergenic | 25.0% |
!! | ATGATGATGTAAATCAAAGT+TGG | - | chr4_1:62972555-62972574 | None:intergenic | 25.0% |
! | TTACACATAACATCAATCAA+TGG | + | chr4_1:62972575-62972594 | Msa0562800:exon | 25.0% |
!!! | AAAGACACCATTTTTATTTC+TGG | + | chr4_1:62972781-62972800 | Msa0562800:intron | 25.0% |
!!! | AAGACACCATTTTTATTTCT+GGG | + | chr4_1:62972782-62972801 | Msa0562800:intron | 25.0% |
!!! | ATCTTTTTTAATCACTCCAT+TGG | + | chr4_1:62972872-62972891 | Msa0562800:intron | 25.0% |
!!! | TCTTTTTTAATCACTCCATT+GGG | + | chr4_1:62972873-62972892 | Msa0562800:intron | 25.0% |
!!! | TCTTAAAGCTTTAAAAGATC+AGG | + | chr4_1:62973532-62973551 | Msa0562800:CDS | 25.0% |
!!! | TTGCATTTTTCAAAATTGTC+CGG | + | chr4_1:62973792-62973811 | Msa0562800:intron | 25.0% |
!!! | TTTTTTGTAGCTATACCATT+TGG | + | chr4_1:62973874-62973893 | Msa0562800:intron | 25.0% |
! | ATTCTGTTATTGTGAAATGA+TGG | + | chr4_1:62974507-62974526 | Msa0562800:intron | 25.0% |
!! | ATCTAAGATATTGCTTATAG+AGG | + | chr4_1:62974542-62974561 | Msa0562800:intron | 25.0% |
!! | TCTAAGATATTGCTTATAGA+GGG | + | chr4_1:62974543-62974562 | Msa0562800:intron | 25.0% |
! | ATCTCAGAAATTGCTTATAT+AGG | + | chr4_1:62974915-62974934 | Msa0562800:intron | 25.0% |
! | TCTCAGAAATTGCTTATATA+GGG | + | chr4_1:62974916-62974935 | Msa0562800:intron | 25.0% |
! | ATAGAAAATAGAATCGGTAA+AGG | - | chr4_1:62974992-62975011 | None:intergenic | 25.0% |
!!! | AATGTACCGTTTTTGAATTT+CGG | + | chr4_1:62975068-62975087 | Msa0562800:intron | 25.0% |
! | AATCATCAACACGTTATATT+TGG | - | chr4_1:62975496-62975515 | None:intergenic | 25.0% |
! | ACAGAATATATAAGAGGTAA+AGG | - | chr4_1:62975611-62975630 | None:intergenic | 25.0% |
! | AGAGATACAGAATATATAAG+AGG | - | chr4_1:62975617-62975636 | None:intergenic | 25.0% |
! | TGGTAAAACAGAGAATATTA+TGG | + | chr4_1:62975911-62975930 | Msa0562800:intron | 25.0% |
! | AAAACAGAGAATATTATGGT+TGG | + | chr4_1:62975915-62975934 | Msa0562800:intron | 25.0% |
!! | AAAAACAAACATAAGTTGGA+TGG | - | chr4_1:62976161-62976180 | None:intergenic | 25.0% |
! | GTGAAAAAACAAACATAAGT+TGG | - | chr4_1:62976165-62976184 | None:intergenic | 25.0% |
! | TCACAAAAAAGAGAAACTTA+TGG | + | chr4_1:62976181-62976200 | Msa0562800:intron | 25.0% |
!!! | TTTCTTTTGATTCAGATACT+AGG | + | chr4_1:62976291-62976310 | Msa0562800:intron | 25.0% |
!!! | TTCTTTTGATTCAGATACTA+GGG | + | chr4_1:62976292-62976311 | Msa0562800:intron | 25.0% |
! | ACAAGAAAACAATAAACGAA+TGG | - | chr4_1:62976435-62976454 | None:intergenic | 25.0% |
!! | TAAGTTGAAAGGTTTCAAAA+AGG | + | chr4_1:62976602-62976621 | Msa0562800:intron | 25.0% |
!!! | GTTAGTCTTATATATTGATC+TGG | + | chr4_1:62977081-62977100 | Msa0562800:intron | 25.0% |
! | AACTTAAGACATTGCTTAAA+TGG | - | chr4_1:62977442-62977461 | None:intergenic | 25.0% |
! | TTCATAAGCATAACTAGATT+AGG | - | chr4_1:62977641-62977660 | None:intergenic | 25.0% |
! | AAAGATTTGATTACTGTGAA+TGG | + | chr4_1:62977691-62977710 | Msa0562800:intron | 25.0% |
!!! | AAGCATTGTTTCTTTTATCT+AGG | - | chr4_1:62977727-62977746 | None:intergenic | 25.0% |
!! | TGTAAATGTCCCTAATATTT+TGG | + | chr4_1:62977803-62977822 | Msa0562800:intron | 25.0% |
! | AATCCTAGACCAAAATATTA+GGG | - | chr4_1:62977815-62977834 | None:intergenic | 25.0% |
! | AAATCCTAGACCAAAATATT+AGG | - | chr4_1:62977816-62977835 | None:intergenic | 25.0% |
!!! | ATTTTACTTTTGCTTGGAAA+AGG | + | chr4_1:62978048-62978067 | Msa0562800:three_prime_UTR | 25.0% |
TGAATGAATGTGTAATAAGG+GGG | - | chr4_1:62972522-62972541 | None:intergenic | 30.0% | |
TTCTTTGTCGATGATTGTTT+GGG | - | chr4_1:62972694-62972713 | None:intergenic | 30.0% | |
ATTCTTTGTCGATGATTGTT+TGG | - | chr4_1:62972695-62972714 | None:intergenic | 30.0% | |
AGGGAAAGATATATACTTGT+GGG | - | chr4_1:62972730-62972749 | None:intergenic | 30.0% | |
AAGGGAAAGATATATACTTG+TGG | - | chr4_1:62972731-62972750 | None:intergenic | 30.0% | |
AACAGAACAGAAGAAAACAA+GGG | - | chr4_1:62972749-62972768 | None:intergenic | 30.0% | |
!! | TATGAAGGTTGATTAGCTTA+AGG | - | chr4_1:62972832-62972851 | None:intergenic | 30.0% |
TTTGCATGAGCAAATACAAT+AGG | - | chr4_1:62973068-62973087 | None:intergenic | 30.0% | |
TATTGTATTTGCTCATGCAA+AGG | + | chr4_1:62973067-62973086 | Msa0562800:CDS | 30.0% | |
ATTGTATTTGCTCATGCAAA+GGG | + | chr4_1:62973068-62973087 | Msa0562800:CDS | 30.0% | |
TCAATATATTTGTTTCCCTC+TGG | - | chr4_1:62973110-62973129 | None:intergenic | 30.0% | |
TTTCTATTTCCTTTGTGAAC+TGG | + | chr4_1:62973363-62973382 | Msa0562800:intron | 30.0% | |
TAGCATTAGTAAACAGGATT+TGG | - | chr4_1:62973404-62973423 | None:intergenic | 30.0% | |
! | TCGTCTTTTCCCAAAAATTA+AGG | - | chr4_1:62973446-62973465 | None:intergenic | 30.0% |
!!! | AGTGTATGTCATTTTTCTTC+AGG | + | chr4_1:62973490-62973509 | Msa0562800:intron | 30.0% |
!!! | GTGTATGTCATTTTTCTTCA+GGG | + | chr4_1:62973491-62973510 | Msa0562800:intron | 30.0% |
! | TTTCTACAATGATCGTTTTC+CGG | + | chr4_1:62973583-62973602 | Msa0562800:CDS | 30.0% |
TACCATATCATAACCAAACA+AGG | - | chr4_1:62973630-62973649 | None:intergenic | 30.0% | |
GAAAAAAATTCCCAACAATG+AGG | + | chr4_1:62973721-62973740 | Msa0562800:CDS | 30.0% | |
CATAGTTATACCTCATTGTT+GGG | - | chr4_1:62973734-62973753 | None:intergenic | 30.0% | |
TCATAGTTATACCTCATTGT+TGG | - | chr4_1:62973735-62973754 | None:intergenic | 30.0% | |
AAGCAAATATTTAGCATCAC+CGG | - | chr4_1:62973814-62973833 | None:intergenic | 30.0% | |
TCAGCAAAAGTAAATTGACA+CGG | - | chr4_1:62973932-62973951 | None:intergenic | 30.0% | |
!! | TGTCAATTTACTTTTGCTGA+TGG | + | chr4_1:62973932-62973951 | Msa0562800:intron | 30.0% |
! | CACCAAAATCAACTTTAAGA+TGG | - | chr4_1:62974078-62974097 | None:intergenic | 30.0% |
!!! | TTTATTTTGGAACCTATCCA+AGG | + | chr4_1:62974258-62974277 | Msa0562800:CDS | 30.0% |
!!! | TTATTTTGGAACCTATCCAA+GGG | + | chr4_1:62974259-62974278 | Msa0562800:CDS | 30.0% |
CATCATACAAAGGAACATAT+TGG | - | chr4_1:62974360-62974379 | None:intergenic | 30.0% | |
!!! | ATAGAGTTACTTTTTTCCTG+AGG | + | chr4_1:62974722-62974741 | Msa0562800:intron | 30.0% |
CTTGCAAAGACTAAATCATA+TGG | - | chr4_1:62974764-62974783 | None:intergenic | 30.0% | |
! | ATGATTTAGTCTTTGCAAGA+AGG | + | chr4_1:62974765-62974784 | Msa0562800:intron | 30.0% |
CAGATATATAAGAGATATGC+TGG | - | chr4_1:62975030-62975049 | None:intergenic | 30.0% | |
GTAACACCGAAATTCAAAAA+CGG | - | chr4_1:62975077-62975096 | None:intergenic | 30.0% | |
TGTGGAAAAGATGATATGTT+TGG | - | chr4_1:62975393-62975412 | None:intergenic | 30.0% | |
ATTGCTGATGAAATACAAAC+TGG | + | chr4_1:62975513-62975532 | Msa0562800:CDS | 30.0% | |
ATGTTTATAGCGAAGTACAA+GGG | - | chr4_1:62975648-62975667 | None:intergenic | 30.0% | |
!! | AAAGGAAGTAAGGTATCTTT+TGG | - | chr4_1:62975844-62975863 | None:intergenic | 30.0% |
TGATATGGTTAAAGGAAGTA+AGG | - | chr4_1:62975854-62975873 | None:intergenic | 30.0% | |
GAATCGTATGATATGGTTAA+AGG | - | chr4_1:62975862-62975881 | None:intergenic | 30.0% | |
! | CTTGTACTTTTGTGTTTTAC+TGG | + | chr4_1:62975891-62975910 | Msa0562800:intron | 30.0% |
! | TATTCTGTAACCTTTTTCTG+AGG | + | chr4_1:62976233-62976252 | Msa0562800:intron | 30.0% |
CAATAGTTGTCAAACATAGA+AGG | + | chr4_1:62976455-62976474 | Msa0562800:intron | 30.0% | |
GTTAAATCAAGACATGCAAA+CGG | - | chr4_1:62976671-62976690 | None:intergenic | 30.0% | |
GTCTTGATTTAACCTTGTAA+TGG | + | chr4_1:62976678-62976697 | Msa0562800:intron | 30.0% | |
AAGAAATCAATGCAAAAGTG+AGG | - | chr4_1:62976757-62976776 | None:intergenic | 30.0% | |
!!! | GTTACTTTTCACAGTACTTT+TGG | + | chr4_1:62976874-62976893 | Msa0562800:intron | 30.0% |
TTAATTCAAAGCCTGATACA+GGG | - | chr4_1:62977319-62977338 | None:intergenic | 30.0% | |
AGTGAAAAATTGAAGGATAG+AGG | + | chr4_1:62977338-62977357 | Msa0562800:CDS | 30.0% | |
CAATGGTGAAAGTTACAAAT+AGG | - | chr4_1:62977492-62977511 | None:intergenic | 30.0% | |
ATTTGATTACTGTGAATGGT+AGG | + | chr4_1:62977695-62977714 | Msa0562800:intron | 30.0% | |
GATAAAAGAAACAATGCTTC+TGG | + | chr4_1:62977728-62977747 | Msa0562800:intron | 30.0% | |
AATGAATGTGTAATAAGGGG+GGG | - | chr4_1:62972520-62972539 | None:intergenic | 35.0% | |
GAATGAATGTGTAATAAGGG+GGG | - | chr4_1:62972521-62972540 | None:intergenic | 35.0% | |
! | TTGATGCGAAGATTTTACAG+AGG | + | chr4_1:62972621-62972640 | Msa0562800:CDS | 35.0% |
GAACAGAACAGAAGAAAACA+AGG | - | chr4_1:62972750-62972769 | None:intergenic | 35.0% | |
GAGAGACCCAGAAATAAAAA+TGG | - | chr4_1:62972791-62972810 | None:intergenic | 35.0% | |
TTACAATCCAAACAACCCAA+TGG | - | chr4_1:62972891-62972910 | None:intergenic | 35.0% | |
CAAATACAATAGGAAGTGGA+TGG | - | chr4_1:62973058-62973077 | None:intergenic | 35.0% | |
TGAGCAAATACAATAGGAAG+TGG | - | chr4_1:62973062-62973081 | None:intergenic | 35.0% | |
AACCATCTTCATTCATCTGA+GGG | - | chr4_1:62973333-62973352 | None:intergenic | 35.0% | |
AAACCATCTTCATTCATCTG+AGG | - | chr4_1:62973334-62973353 | None:intergenic | 35.0% | |
CAATAAACTCCAGTTCACAA+AGG | - | chr4_1:62973375-62973394 | None:intergenic | 35.0% | |
TGAACTGGAGTTTATTGTTG+TGG | + | chr4_1:62973378-62973397 | Msa0562800:intron | 35.0% | |
AAGCAGTAGCATTAGTAAAC+AGG | - | chr4_1:62973410-62973429 | None:intergenic | 35.0% | |
!! | AGCCTTGTTTGGTTATGATA+TGG | + | chr4_1:62973625-62973644 | Msa0562800:CDS | 35.0% |
ATGGTACTTCCTATGAATAC+TGG | + | chr4_1:62973644-62973663 | Msa0562800:CDS | 35.0% | |
GTTGAAGTTAGCAAGAAAGT+GGG | + | chr4_1:62973688-62973707 | Msa0562800:CDS | 35.0% | |
TTGAAGTTAGCAAGAAAGTG+GGG | + | chr4_1:62973689-62973708 | Msa0562800:CDS | 35.0% | |
!! | AAATCAACTTTAAGATGGCC+TGG | - | chr4_1:62974073-62974092 | None:intergenic | 35.0% |
!! | GGCCATCTTAAAGTTGATTT+TGG | + | chr4_1:62974073-62974092 | Msa0562800:CDS | 35.0% |
CCAAAATAAATGCAGCTATG+CGG | - | chr4_1:62974248-62974267 | None:intergenic | 35.0% | |
!!! | TATTTTGGAACCTATCCAAG+GGG | + | chr4_1:62974260-62974279 | Msa0562800:CDS | 35.0% |
!! | TACAAGTCTTGTGACTTGTT+TGG | + | chr4_1:62974589-62974608 | Msa0562800:intron | 35.0% |
! | AACTAGACATCTTTTTCCTC+AGG | - | chr4_1:62974741-62974760 | None:intergenic | 35.0% |
TCTATTGTGATACATGAGCA+CGG | - | chr4_1:62974813-62974832 | None:intergenic | 35.0% | |
!!! | TACAAGTCTTGCGACTTTTT+TGG | + | chr4_1:62974962-62974981 | Msa0562800:intron | 35.0% |
CAAAAACGGTACATTTCACA+TGG | - | chr4_1:62975063-62975082 | None:intergenic | 35.0% | |
ATTAGATCATGAACGAAAGC+CGG | - | chr4_1:62975209-62975228 | None:intergenic | 35.0% | |
TAATGTGAGAGCTATTCTAC+AGG | - | chr4_1:62975340-62975359 | None:intergenic | 35.0% | |
AGCTTTCAAATAACCATCTG+GGG | - | chr4_1:62975457-62975476 | None:intergenic | 35.0% | |
CAGCTTTCAAATAACCATCT+GGG | - | chr4_1:62975458-62975477 | None:intergenic | 35.0% | |
ACAGCTTTCAAATAACCATC+TGG | - | chr4_1:62975459-62975478 | None:intergenic | 35.0% | |
GATGTTTATAGCGAAGTACA+AGG | - | chr4_1:62975649-62975668 | None:intergenic | 35.0% | |
TTGCGAAGAATCGTATGATA+TGG | - | chr4_1:62975869-62975888 | None:intergenic | 35.0% | |
TGCATATTCACAGGAATAGA+AGG | - | chr4_1:62976033-62976052 | None:intergenic | 35.0% | |
AGTTTCTGATGCATATTCAC+AGG | - | chr4_1:62976042-62976061 | None:intergenic | 35.0% | |
CTAGGTAGATGCATTTAACT+AGG | + | chr4_1:62976116-62976135 | Msa0562800:intron | 35.0% | |
GGAAACTAAACCTCAGAAAA+AGG | - | chr4_1:62976246-62976265 | None:intergenic | 35.0% | |
GTGATGCTTTGTATAAAACC+TGG | + | chr4_1:62976368-62976387 | Msa0562800:intron | 35.0% | |
AAGACCAATCAAGGGTTTAA+GGG | - | chr4_1:62976503-62976522 | None:intergenic | 35.0% | |
TAAGACCAATCAAGGGTTTA+AGG | - | chr4_1:62976504-62976523 | None:intergenic | 35.0% | |
!! | TAAACCCTTGATTGGTCTTA+TGG | + | chr4_1:62976504-62976523 | Msa0562800:intron | 35.0% |
! | ACTTTTCACAGTACTTTTGG+TGG | + | chr4_1:62976877-62976896 | Msa0562800:intron | 35.0% |
! | TACTTTTGGTGGAAATCCAT+TGG | + | chr4_1:62976888-62976907 | Msa0562800:CDS | 35.0% |
TTCTTTGATCACTTCAAGTG+AGG | - | chr4_1:62976932-62976951 | None:intergenic | 35.0% | |
TGCAACTGATGTCTTAGTAT+TGG | + | chr4_1:62977160-62977179 | Msa0562800:intron | 35.0% | |
GAAGATTCAGAAACAATACC+CGG | + | chr4_1:62977226-62977245 | Msa0562800:CDS | 35.0% | |
TAATTCAAAGCCTGATACAG+GGG | - | chr4_1:62977318-62977337 | None:intergenic | 35.0% | |
CTTAATTCAAAGCCTGATAC+AGG | - | chr4_1:62977320-62977339 | None:intergenic | 35.0% | |
!! | AATTGTGTCATGTGTTGACT+TGG | - | chr4_1:62977372-62977391 | None:intergenic | 35.0% |
TTTCTTACCTTATGCACAGT+GGG | - | chr4_1:62977409-62977428 | None:intergenic | 35.0% | |
TTGAGTTCACATGCACATTA+AGG | + | chr4_1:62977460-62977479 | Msa0562800:intron | 35.0% | |
TATAGCTAGTTGAGTACTTC+AGG | + | chr4_1:62977535-62977554 | Msa0562800:intron | 35.0% | |
! | AATCCTTTGAGAGGACAAAA+AGG | - | chr4_1:62977768-62977787 | None:intergenic | 35.0% |
! | TTTTGTCCTCTCAAAGGATT+AGG | + | chr4_1:62977768-62977787 | Msa0562800:intron | 35.0% |
AAGTAACCTAATCCTTTGAG+AGG | - | chr4_1:62977777-62977796 | None:intergenic | 35.0% | |
!!! | TGTCCCTAATATTTTGGTCT+AGG | + | chr4_1:62977809-62977828 | Msa0562800:intron | 35.0% |
TAAAAGTAATCCTTGCAGTG+CGG | + | chr4_1:62977840-62977859 | Msa0562800:intron | 35.0% | |
!!! | GGCTTCATCTTTTTCAACAT+TGG | - | chr4_1:62977919-62977938 | None:intergenic | 35.0% |
TTAACCAGATAATGAATGCC+TGG | + | chr4_1:62978002-62978021 | Msa0562800:exon | 35.0% | |
ATGAATGTGTAATAAGGGGG+GGG | - | chr4_1:62972519-62972538 | None:intergenic | 40.0% | |
! | TACAGAGGAACCAGAACTTT+TGG | + | chr4_1:62972636-62972655 | Msa0562800:CDS | 40.0% |
! | AATCACTCCATTGGGTTGTT+TGG | + | chr4_1:62972881-62972900 | Msa0562800:intron | 40.0% |
ACGGATCTTGCTAATTACCA+AGG | + | chr4_1:62973172-62973191 | Msa0562800:intron | 40.0% | |
GTCATTCCGGTCTAAATTGT+CGG | - | chr4_1:62973210-62973229 | None:intergenic | 40.0% | |
! | AACATGTGTCAGTGTCATTC+CGG | - | chr4_1:62973223-62973242 | None:intergenic | 40.0% |
ATCCCTCAGATGAATGAAGA+TGG | + | chr4_1:62973328-62973347 | Msa0562800:intron | 40.0% | |
! | CTTTAAAAGATCAGGCAGAC+AGG | + | chr4_1:62973540-62973559 | Msa0562800:CDS | 40.0% |
GTCAAATACTCAGCAAACAC+CGG | - | chr4_1:62973605-62973624 | None:intergenic | 40.0% | |
!! | GAGTATTTGACAGCCTTGTT+TGG | + | chr4_1:62973614-62973633 | Msa0562800:CDS | 40.0% |
CTTTCTTGCTAACTTCAACG+CGG | - | chr4_1:62973687-62973706 | None:intergenic | 40.0% | |
CGTTGAAGTTAGCAAGAAAG+TGG | + | chr4_1:62973687-62973706 | Msa0562800:CDS | 40.0% | |
AACATGAGACAATAAGAGCC+TGG | - | chr4_1:62973967-62973986 | None:intergenic | 40.0% | |
GCTCTTATTGTCTCATGTTG+TGG | + | chr4_1:62973968-62973987 | Msa0562800:CDS | 40.0% | |
TGCTTCAATGGTCGTACATT+GGG | + | chr4_1:62973992-62974011 | Msa0562800:CDS | 40.0% | |
CATTAAAGGACCAAAACCAC+GGG | - | chr4_1:62974050-62974069 | None:intergenic | 40.0% | |
GCATTAAAGGACCAAAACCA+CGG | - | chr4_1:62974051-62974070 | None:intergenic | 40.0% | |
TTAAGATGGCCTGGCATTAA+AGG | - | chr4_1:62974064-62974083 | None:intergenic | 40.0% | |
! | GCGCTCGAGAAAATTTTCAA+AGG | + | chr4_1:62974106-62974125 | Msa0562800:CDS | 40.0% |
! | CCGCATAGCTGCATTTATTT+TGG | + | chr4_1:62974245-62974264 | Msa0562800:CDS | 40.0% |
CTATGCGGTACATCATACAA+AGG | - | chr4_1:62974370-62974389 | None:intergenic | 40.0% | |
GTTAGACAACGAGTTCTATG+CGG | - | chr4_1:62974385-62974404 | None:intergenic | 40.0% | |
TAGAAACCTGCTAGGTTTCA+GGG | - | chr4_1:62974680-62974699 | None:intergenic | 40.0% | |
CTCTAATCTAGAAACCTGCT+AGG | - | chr4_1:62974688-62974707 | None:intergenic | 40.0% | |
! | TTAGTCTTTGCAAGAAGGAC+TGG | + | chr4_1:62974770-62974789 | Msa0562800:intron | 40.0% |
AGCACATTGAGAGAATAGTG+AGG | + | chr4_1:62974846-62974865 | Msa0562800:intron | 40.0% | |
GCACATTGAGAGAATAGTGA+GGG | + | chr4_1:62974847-62974866 | Msa0562800:intron | 40.0% | |
CTTTCAAATAACCATCTGGG+GGG | - | chr4_1:62975455-62975474 | None:intergenic | 40.0% | |
GCTTTCAAATAACCATCTGG+GGG | - | chr4_1:62975456-62975475 | None:intergenic | 40.0% | |
!! | CAAACTGGATTAGCAAGAAC+AGG | + | chr4_1:62975528-62975547 | Msa0562800:CDS | 40.0% |
AGCAAGAACAGGAAAAATGC+TGG | + | chr4_1:62975539-62975558 | Msa0562800:CDS | 40.0% | |
!! | AAAAATGCTGGCTTGTGAGT+GGG | + | chr4_1:62975551-62975570 | Msa0562800:CDS | 40.0% |
AGCTTGAAACTGACACTACA+TGG | + | chr4_1:62975788-62975807 | Msa0562800:intron | 40.0% | |
GACACTACATGGCAAGAAAT+AGG | + | chr4_1:62975799-62975818 | Msa0562800:intron | 40.0% | |
CTTGTCTGAGTCTTAGTCAA+TGG | + | chr4_1:62976060-62976079 | Msa0562800:intron | 40.0% | |
TGCATTTAACTAGGTACCAC+TGG | + | chr4_1:62976125-62976144 | Msa0562800:intron | 40.0% | |
! | CAAACATAAGTTGGATGGTC+AGG | - | chr4_1:62976156-62976175 | None:intergenic | 40.0% |
TCAGATACTAGGGAAAGCTT+TGG | + | chr4_1:62976302-62976321 | Msa0562800:intron | 40.0% | |
TGTATAAAACCTGGACAGCA+TGG | + | chr4_1:62976377-62976396 | Msa0562800:intron | 40.0% | |
CACACCATAAGACCAATCAA+GGG | - | chr4_1:62976511-62976530 | None:intergenic | 40.0% | |
TCACACCATAAGACCAATCA+AGG | - | chr4_1:62976512-62976531 | None:intergenic | 40.0% | |
AACAAAACTCCACCTTCTGT+TGG | + | chr4_1:62976539-62976558 | Msa0562800:intron | 40.0% | |
AGACTTCTGATTCCAACAGA+AGG | - | chr4_1:62976554-62976573 | None:intergenic | 40.0% | |
TTTCACTAGTTCCCATAGGA+TGG | - | chr4_1:62976727-62976746 | None:intergenic | 40.0% | |
GCAATTTCACTAGTTCCCAT+AGG | - | chr4_1:62976731-62976750 | None:intergenic | 40.0% | |
CATCGATATCTCAAAGAGAG+TGG | - | chr4_1:62977131-62977150 | None:intergenic | 40.0% | |
ATTGGACAGATCTACCCAAA+TGG | + | chr4_1:62977178-62977197 | Msa0562800:intron | 40.0% | |
TTGGACAGATCTACCCAAAT+GGG | + | chr4_1:62977179-62977198 | Msa0562800:intron | 40.0% | |
TTCTTACCTTATGCACAGTG+GGG | - | chr4_1:62977408-62977427 | None:intergenic | 40.0% | |
CTTTCTTACCTTATGCACAG+TGG | - | chr4_1:62977410-62977429 | None:intergenic | 40.0% | |
! | CATCCTTTTTGTCCTCTCAA+AGG | + | chr4_1:62977762-62977781 | Msa0562800:intron | 40.0% |
TGAGATCCAACAAGGTTCTA+AGG | + | chr4_1:62977864-62977883 | Msa0562800:CDS | 40.0% | |
TAGACCAGGCATTCATTATC+TGG | - | chr4_1:62978009-62978028 | None:intergenic | 40.0% | |
ACTGGGAATAAGTGATCTCA+AGG | - | chr4_1:62978159-62978178 | None:intergenic | 40.0% | |
TGTGGCAACACCAAAAGTTC+TGG | - | chr4_1:62972649-62972668 | None:intergenic | 45.0% | |
!! | TGGGAAGATGAAGAAGCGTT+GGG | - | chr4_1:62972675-62972694 | None:intergenic | 45.0% |
! | TTGGGAAGATGAAGAAGCGT+TGG | - | chr4_1:62972676-62972695 | None:intergenic | 45.0% |
TGGCTACTCTGCAGTTAATC+AGG | + | chr4_1:62973139-62973158 | Msa0562800:intron | 45.0% | |
!! | GTAGCACCGACAATTTAGAC+CGG | + | chr4_1:62973201-62973220 | Msa0562800:intron | 45.0% |
CCTTCAGCACCAGTATTCAT+AGG | - | chr4_1:62973656-62973675 | None:intergenic | 45.0% | |
! | CCTATGAATACTGGTGCTGA+AGG | + | chr4_1:62973653-62973672 | Msa0562800:CDS | 45.0% |
! | TGCTGATGGAAACTTGTTCC+AGG | + | chr4_1:62973946-62973965 | Msa0562800:intron | 45.0% |
TCATGTTGTGGCTGCTTCAA+TGG | + | chr4_1:62973980-62973999 | Msa0562800:CDS | 45.0% | |
CTGCTTCAATGGTCGTACAT+TGG | + | chr4_1:62973991-62974010 | Msa0562800:CDS | 45.0% | |
! | AATGAAGCTACCCGTGGTTT+TGG | + | chr4_1:62974037-62974056 | Msa0562800:CDS | 45.0% |
!! | GGTTTTGGTCCTTTAATGCC+AGG | + | chr4_1:62974052-62974071 | Msa0562800:CDS | 45.0% |
! | CCTTTTTCTGCAGTTCAGCA+GGG | - | chr4_1:62974222-62974241 | None:intergenic | 45.0% |
! | TCCTTTTTCTGCAGTTCAGC+AGG | - | chr4_1:62974223-62974242 | None:intergenic | 45.0% |
AGAAACCTGCTAGGTTTCAG+GGG | - | chr4_1:62974679-62974698 | None:intergenic | 45.0% | |
CTAGAAACCTGCTAGGTTTC+AGG | - | chr4_1:62974681-62974700 | None:intergenic | 45.0% | |
TGTGACAGTCCATCTTTGAC+CGG | + | chr4_1:62975187-62975206 | Msa0562800:intron | 45.0% | |
!! | GAAAAATGCTGGCTTGTGAG+TGG | + | chr4_1:62975550-62975569 | Msa0562800:CDS | 45.0% |
AGAAGTTCGTCCAGATGTAG+TGG | + | chr4_1:62975575-62975594 | Msa0562800:CDS | 45.0% | |
TGAACACCAACCACTACATC+TGG | - | chr4_1:62975588-62975607 | None:intergenic | 45.0% | |
AACATCATCCTGTCGTCACA+CGG | + | chr4_1:62975663-62975682 | Msa0562800:intron | 45.0% | |
TTTACTAACCGTGTGACGAC+AGG | - | chr4_1:62975674-62975693 | None:intergenic | 45.0% | |
CCTAGCTGCATACTTGCAAA+TGG | - | chr4_1:62976101-62976120 | None:intergenic | 45.0% | |
CCATTTGCAAGTATGCAGCT+AGG | + | chr4_1:62976098-62976117 | Msa0562800:intron | 45.0% | |
! | GATACTAGGGAAAGCTTTGG+TGG | + | chr4_1:62976305-62976324 | Msa0562800:intron | 45.0% |
TAAAACCTGGACAGCATGGA+AGG | + | chr4_1:62976381-62976400 | Msa0562800:intron | 45.0% | |
TTAAACCTTCCATGCTGTCC+AGG | - | chr4_1:62976389-62976408 | None:intergenic | 45.0% | |
ACCAATCAAGGGTTTAAGGG+CGG | - | chr4_1:62976500-62976519 | None:intergenic | 45.0% | |
CTTCTGATTCCAACAGAAGG+TGG | - | chr4_1:62976551-62976570 | None:intergenic | 45.0% | |
TTTGTGAATCCTCGTGTCCA+TGG | + | chr4_1:62976645-62976664 | Msa0562800:intron | 45.0% | |
GATCACTTCAAGTGAGGCAA+TGG | - | chr4_1:62976926-62976945 | None:intergenic | 45.0% | |
!! | AAGAAGAGAGACTTGCTGAG+AGG | + | chr4_1:62976947-62976966 | Msa0562800:CDS | 45.0% |
GAAAGTTTGTCCCCTGTATC+AGG | + | chr4_1:62977305-62977324 | Msa0562800:CDS | 45.0% | |
TCTTACCTTATGCACAGTGG+GGG | - | chr4_1:62977407-62977426 | None:intergenic | 45.0% | |
! | GTACTTCAGGTTATGCGTCT+TGG | + | chr4_1:62977548-62977567 | Msa0562800:intron | 45.0% |
AATTTCCAGCACATCAGCGA+GGG | - | chr4_1:62977890-62977909 | None:intergenic | 45.0% | |
CACAACGATCACATGCACTA+GGG | - | chr4_1:62977966-62977985 | None:intergenic | 45.0% | |
!! | TGAAGAAGCGTTGGGTTGTG+TGG | - | chr4_1:62972667-62972686 | None:intergenic | 50.0% |
ATGCAAAGGGATCAGCTGTG+TGG | + | chr4_1:62973081-62973100 | Msa0562800:intron | 50.0% | |
TGCAAAGGGATCAGCTGTGT+GGG | + | chr4_1:62973082-62973101 | Msa0562800:intron | 50.0% | |
!! | GTCGGTGCTACATAAAGCCT+TGG | - | chr4_1:62973192-62973211 | None:intergenic | 50.0% |
CGATACAGACATGCTGACAC+CGG | - | chr4_1:62973276-62973295 | None:intergenic | 50.0% | |
! | CGGTGTCAGCATGTCTGTAT+CGG | + | chr4_1:62973274-62973293 | Msa0562800:intron | 50.0% |
! | GTCTGTATCGGTGCTTCGTA+AGG | + | chr4_1:62973286-62973305 | Msa0562800:intron | 50.0% |
! | GAATACTGGTGCTGAAGGTG+TGG | + | chr4_1:62973658-62973677 | Msa0562800:CDS | 50.0% |
TGTGACAATGAAGCTACCCG+TGG | + | chr4_1:62974031-62974050 | Msa0562800:CDS | 50.0% | |
CCCTGCTGAACTGCAGAAAA+AGG | + | chr4_1:62974219-62974238 | Msa0562800:intron | 50.0% | |
AACCTATCCAAGGGGAAGCT+GGG | + | chr4_1:62974268-62974287 | Msa0562800:CDS | 50.0% | |
GAAACCTGCTAGGTTTCAGG+GGG | - | chr4_1:62974678-62974697 | None:intergenic | 50.0% | |
GAACGAAAGCCGGTCAAAGA+TGG | - | chr4_1:62975199-62975218 | None:intergenic | 50.0% | |
GTTCGTCCAGATGTAGTGGT+TGG | + | chr4_1:62975579-62975598 | Msa0562800:intron | 50.0% | |
! | ACTAGGGAAAGCTTTGGTGG+AGG | + | chr4_1:62976308-62976327 | Msa0562800:CDS | 50.0% |
TCTGCAAGAACTGCGCTAAC+TGG | - | chr4_1:62976341-62976360 | None:intergenic | 50.0% | |
TCCGCCCTTAAACCCTTGAT+TGG | + | chr4_1:62976496-62976515 | Msa0562800:intron | 50.0% | |
TCAAGACATGCAAACGGCCA+TGG | - | chr4_1:62976665-62976684 | None:intergenic | 50.0% | |
GACAGATCTACCCAAATGGG+AGG | + | chr4_1:62977182-62977201 | Msa0562800:intron | 50.0% | |
GAGAAGCTCACCTCCCATTT+GGG | - | chr4_1:62977195-62977214 | None:intergenic | 50.0% | |
CAAATGGGAGGTGAGCTTCT+CGG | + | chr4_1:62977194-62977213 | Msa0562800:CDS | 50.0% | |
ACAATACCCGGACCATGTGA+AGG | + | chr4_1:62977238-62977257 | Msa0562800:CDS | 50.0% | |
AGTGCGGATGAGATCCAACA+AGG | + | chr4_1:62977856-62977875 | Msa0562800:intron | 50.0% | |
CAATTTCCAGCACATCAGCG+AGG | - | chr4_1:62977891-62977910 | None:intergenic | 50.0% | |
CCACAACGATCACATGCACT+AGG | - | chr4_1:62977967-62977986 | None:intergenic | 50.0% | |
CCTAGTGCATGTGATCGTTG+TGG | + | chr4_1:62977964-62977983 | Msa0562800:CDS | 50.0% | |
ATCAGCTGTGTGGGATCCAG+AGG | + | chr4_1:62973091-62973110 | Msa0562800:intron | 55.0% | |
TCAGCTGTGTGGGATCCAGA+GGG | + | chr4_1:62973092-62973111 | Msa0562800:intron | 55.0% | |
AGATCAGGCAGACAGGCTGA+CGG | + | chr4_1:62973547-62973566 | Msa0562800:CDS | 55.0% | |
GAACCTATCCAAGGGGAAGC+TGG | + | chr4_1:62974267-62974286 | Msa0562800:CDS | 55.0% | |
ACCTATCCAAGGGGAAGCTG+GGG | + | chr4_1:62974269-62974288 | Msa0562800:CDS | 55.0% | |
AACATACCCCAGCTTCCCCT+TGG | - | chr4_1:62974278-62974297 | None:intergenic | 55.0% | |
TTCTCCCCCTGAAACCTAGC+AGG | + | chr4_1:62974671-62974690 | Msa0562800:intron | 55.0% | |
CAGGTGAAAATCCCCCCAGA+TGG | + | chr4_1:62975441-62975460 | Msa0562800:intron | 55.0% | |
GGATGGTCAGGTCTATCCAG+TGG | - | chr4_1:62976144-62976163 | None:intergenic | 55.0% | |
! | ATGGCAACTGCACTGGCCAA+TGG | - | chr4_1:62976907-62976926 | None:intergenic | 55.0% |
TGAGGCAATGGCAACTGCAC+TGG | - | chr4_1:62976914-62976933 | None:intergenic | 55.0% | |
CGAGAAGCTCACCTCCCATT+TGG | - | chr4_1:62977196-62977215 | None:intergenic | 55.0% | |
ATACCCGGACCATGTGAAGG+AGG | + | chr4_1:62977241-62977260 | Msa0562800:CDS | 55.0% | |
CGGGGAAGAGGACTGTTCAT+TGG | + | chr4_1:62977266-62977285 | Msa0562800:CDS | 55.0% | |
TCACTCCCCCACTGTGCATA+AGG | + | chr4_1:62977399-62977418 | Msa0562800:CDS | 55.0% | |
TGGATCTCATCCGCACTGCA+AGG | - | chr4_1:62977853-62977872 | None:intergenic | 55.0% | |
CGAGGGCCTTAGAACCTTGT+TGG | - | chr4_1:62977873-62977892 | None:intergenic | 55.0% | |
! | GCTGGAGGAGCAGCATCTTT+TGG | - | chr4_1:62977940-62977959 | None:intergenic | 55.0% |
AAAGATGCTGCTCCTCCAGC+TGG | + | chr4_1:62977940-62977959 | Msa0562800:CDS | 55.0% | |
CGTTGTGGTCGAGTCGTGTA+TGG | + | chr4_1:62977979-62977998 | Msa0562800:CDS | 55.0% | |
ACCCCAGCTTCCCCTTGGAT+AGG | - | chr4_1:62974273-62974292 | None:intergenic | 60.0% | |
TGCAAACGGCCATGGACACG+AGG | - | chr4_1:62976657-62976676 | None:intergenic | 60.0% | |
GCACCTCCTTCACATGGTCC+GGG | - | chr4_1:62977247-62977266 | None:intergenic | 60.0% | |
CGCACCTCCTTCACATGGTC+CGG | - | chr4_1:62977248-62977267 | None:intergenic | 60.0% | |
CGGACCATGTGAAGGAGGTG+CGG | + | chr4_1:62977246-62977265 | Msa0562800:CDS | 60.0% | |
! | GGACCATGTGAAGGAGGTGC+GGG | + | chr4_1:62977247-62977266 | Msa0562800:CDS | 60.0% |
! | GACCATGTGAAGGAGGTGCG+GGG | + | chr4_1:62977248-62977267 | Msa0562800:CDS | 60.0% |
TTCCCCGCACCTCCTTCACA+TGG | - | chr4_1:62977253-62977272 | None:intergenic | 60.0% | |
TAAGGCCCTCGCTGATGTGC+TGG | + | chr4_1:62977882-62977901 | Msa0562800:CDS | 60.0% | |
TCACATGCACTAGGGCCAGC+TGG | - | chr4_1:62977958-62977977 | None:intergenic | 60.0% | |
! | GTGAAGGAGGTGCGGGGAAG+AGG | + | chr4_1:62977254-62977273 | Msa0562800:CDS | 65.0% |
CATGCACTAGGGCCAGCTGG+AGG | - | chr4_1:62977955-62977974 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_1 | gene | 62972516 | 62978193 | 62972516 | ID=Msa0562800;Name=Msa0562800 |
chr4_1 | mRNA | 62972516 | 62978193 | 62972516 | ID=Msa0562800-mRNA-1;Parent=Msa0562800;Name=Msa0562800-mRNA-1;_AED=0.03;_eAED=0.03;_QI=78|0.77|0.8|1|0.66|0.8|10|188|436 |
chr4_1 | exon | 62972516 | 62972733 | 62972516 | ID=Msa0562800-mRNA-1:exon:19861;Parent=Msa0562800-mRNA-1 |
chr4_1 | exon | 62973052 | 62973097 | 62973052 | ID=Msa0562800-mRNA-1:exon:19862;Parent=Msa0562800-mRNA-1 |
chr4_1 | exon | 62973512 | 62973742 | 62973512 | ID=Msa0562800-mRNA-1:exon:19863;Parent=Msa0562800-mRNA-1 |
chr4_1 | exon | 62973968 | 62974127 | 62973968 | ID=Msa0562800-mRNA-1:exon:19864;Parent=Msa0562800-mRNA-1 |
chr4_1 | exon | 62974235 | 62974290 | 62974235 | ID=Msa0562800-mRNA-1:exon:19865;Parent=Msa0562800-mRNA-1 |
chr4_1 | exon | 62975444 | 62975596 | 62975444 | ID=Msa0562800-mRNA-1:exon:19866;Parent=Msa0562800-mRNA-1 |
chr4_1 | exon | 62976306 | 62976367 | 62976306 | ID=Msa0562800-mRNA-1:exon:19867;Parent=Msa0562800-mRNA-1 |
chr4_1 | exon | 62976888 | 62976968 | 62976888 | ID=Msa0562800-mRNA-1:exon:19868;Parent=Msa0562800-mRNA-1 |
chr4_1 | exon | 62977187 | 62977420 | 62977187 | ID=Msa0562800-mRNA-1:exon:19869;Parent=Msa0562800-mRNA-1 |
chr4_1 | exon | 62977858 | 62978193 | 62977858 | ID=Msa0562800-mRNA-1:exon:19870;Parent=Msa0562800-mRNA-1 |
chr4_1 | five_prime_UTR | 62972516 | 62972593 | 62972516 | ID=Msa0562800-mRNA-1:five_prime_utr;Parent=Msa0562800-mRNA-1 |
chr4_1 | CDS | 62972594 | 62972733 | 62972594 | ID=Msa0562800-mRNA-1:cds;Parent=Msa0562800-mRNA-1 |
chr4_1 | CDS | 62973052 | 62973097 | 62973052 | ID=Msa0562800-mRNA-1:cds;Parent=Msa0562800-mRNA-1 |
chr4_1 | CDS | 62973512 | 62973742 | 62973512 | ID=Msa0562800-mRNA-1:cds;Parent=Msa0562800-mRNA-1 |
chr4_1 | CDS | 62973968 | 62974127 | 62973968 | ID=Msa0562800-mRNA-1:cds;Parent=Msa0562800-mRNA-1 |
chr4_1 | CDS | 62974235 | 62974290 | 62974235 | ID=Msa0562800-mRNA-1:cds;Parent=Msa0562800-mRNA-1 |
chr4_1 | CDS | 62975444 | 62975596 | 62975444 | ID=Msa0562800-mRNA-1:cds;Parent=Msa0562800-mRNA-1 |
chr4_1 | CDS | 62976306 | 62976367 | 62976306 | ID=Msa0562800-mRNA-1:cds;Parent=Msa0562800-mRNA-1 |
chr4_1 | CDS | 62976888 | 62976968 | 62976888 | ID=Msa0562800-mRNA-1:cds;Parent=Msa0562800-mRNA-1 |
chr4_1 | CDS | 62977187 | 62977420 | 62977187 | ID=Msa0562800-mRNA-1:cds;Parent=Msa0562800-mRNA-1 |
chr4_1 | CDS | 62977858 | 62978005 | 62977858 | ID=Msa0562800-mRNA-1:cds;Parent=Msa0562800-mRNA-1 |
chr4_1 | three_prime_UTR | 62978006 | 62978193 | 62978006 | ID=Msa0562800-mRNA-1:three_prime_utr;Parent=Msa0562800-mRNA-1 |
Gene Sequence |
Protein sequence |