Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0697090 | AES90604.1 | 99.083 | 109 | 1 | 0 | 1 | 109 | 1 | 109 | 3.76e-68 | 213 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0697090 | G7JV56 | 99.083 | 109 | 1 | 0 | 1 | 109 | 1 | 109 | 1.79e-68 | 213 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0638930 | Msa0697090 | 0.898116 | 7.267934e-77 | -8.615850e-47 |
| Msa0640510 | Msa0697090 | 0.805848 | 1.094900e-49 | -8.615850e-47 |
| Msa0697090 | Msa0997080 | -0.810041 | 1.403917e-50 | -8.615850e-47 |
| Msa0697090 | Msa1307070 | -0.819345 | 1.219611e-52 | -8.615850e-47 |
| Msa0697090 | Msa1316200 | -0.819468 | 1.143535e-52 | -8.615850e-47 |
| Msa0697090 | Msa1388510 | -0.818131 | 2.300745e-52 | -8.615850e-47 |
| Msa0354800 | Msa0697090 | 0.800969 | 1.122884e-48 | -8.615850e-47 |
| Msa0542480 | Msa0697090 | -0.803367 | 3.605596e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0697090 | MtrunA17_Chr4g0049721 | 80.814 | 172 | 2 | 1 | 1 | 172 | 1 | 141 | 1.62e-60 | 184 |
| Msa0697090 | MtrunA17_Chr2g0279691 | 43.046 | 151 | 45 | 4 | 25 | 168 | 47 | 163 | 4.45e-23 | 89.7 |
| Msa0697090 | MtrunA17_Chr2g0279681 | 41.818 | 110 | 48 | 3 | 50 | 143 | 2 | 111 | 1.76e-14 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0697090 | AT5G09570.1 | 46.857 | 175 | 50 | 4 | 1 | 170 | 1 | 137 | 5.85e-45 | 145 |
| Msa0697090 | AT5G64400.1 | 54.032 | 124 | 24 | 2 | 47 | 170 | 52 | 142 | 3.79e-31 | 110 |
| Msa0697090 | AT5G64400.3 | 69.444 | 72 | 20 | 1 | 40 | 111 | 1 | 70 | 1.43e-21 | 85.1 |
| Msa0697090 | AT5G64400.2 | 69.231 | 65 | 18 | 1 | 47 | 111 | 52 | 114 | 4.10e-17 | 74.7 |
Find 76 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATGGCAGGTATGGCTTT+TGG | 0.258248 | 4_4:-67085456 | Msa0697090:intron |
| GCACCGACTTCAAGCTCTTT+TGG | 0.290138 | 4_4:-67085333 | Msa0697090:CDS |
| TTCTTTAAACATCTGAAGAT+TGG | 0.314777 | 4_4:-67083932 | Msa0697090:three_prime_UTR |
| GCCTTGTAAAAGTTAAGTTT+TGG | 0.324210 | 4_4:+67083855 | None:intergenic |
| TAACTGCTCTAGGCATGTTT+TGG | 0.334364 | 4_4:-67084317 | Msa0697090:three_prime_UTR |
| AGAAAACTTGGAAATGGTCT+TGG | 0.392994 | 4_4:+67086682 | None:intergenic |
| GGCGGTATTCTTAGTGGCAT+TGG | 0.395537 | 4_4:-67085582 | Msa0697090:CDS |
| AACCCTAGAAAACTTGGAAA+TGG | 0.396000 | 4_4:+67086676 | None:intergenic |
| CTAGCATATCCATGTAAAAC+TGG | 0.399015 | 4_4:+67084378 | None:intergenic |
| ACAGGCTGCTAACATTGATA+TGG | 0.417889 | 4_4:-67084914 | Msa0697090:intron |
| CGTGTTCCCATTCGTTTATC+CGG | 0.419406 | 4_4:+67086713 | None:intergenic |
| GTTGGTCTGGATTGACTTTG+TGG | 0.434691 | 4_4:+67084030 | None:intergenic |
| CTGCTAATAAAGACAGCAAT+AGG | 0.437226 | 4_4:+67084057 | None:intergenic |
| TATATTCTATGAAGTTGGTC+TGG | 0.441285 | 4_4:+67084017 | None:intergenic |
| TATTTAAACCCTAGAAAACT+TGG | 0.442628 | 4_4:+67086670 | None:intergenic |
| CAGGGCCGTGGATGCTGTTG+TGG | 0.451033 | 4_4:-67085412 | Msa0697090:CDS |
| GCGTTTGTTACTGTCTAAGA+TGG | 0.456069 | 4_4:-67084287 | Msa0697090:three_prime_UTR |
| ACCATGGCACGCCGTAGCTC+CGG | 0.466038 | 4_4:-67086566 | Msa0697090:CDS |
| GAAAACTTGGAAATGGTCTT+GGG | 0.469304 | 4_4:+67086683 | None:intergenic |
| CCACCACTCTGAGGATTAGC+TGG | 0.472443 | 4_4:+67085606 | None:intergenic |
| AACTACTGCTTCATGTTGAA+TGG | 0.473377 | 4_4:+67085380 | None:intergenic |
| TGCAATGGCACACAGGGCCG+TGG | 0.474780 | 4_4:-67085424 | Msa0697090:CDS |
| CGTGGTGCAGCACGTGGAGC+TGG | 0.485293 | 4_4:+67085804 | None:intergenic |
| GGTGGCGGCGGTATTCTTAG+TGG | 0.495349 | 4_4:-67085588 | Msa0697090:CDS |
| GCAAGTATATTCTATGAAGT+TGG | 0.500006 | 4_4:+67084012 | None:intergenic |
| AATGAGTATGTAACTGCTCT+AGG | 0.511721 | 4_4:-67084327 | Msa0697090:exon |
| TAGATTATTCGAGTAAGATC+CGG | 0.518003 | 4_4:-67086732 | None:intergenic |
| TACTGTAAAATCTTTCAAAG+TGG | 0.518542 | 4_4:+67084837 | None:intergenic |
| GCTGCACCACGTCCTGCTCC+AGG | 0.519152 | 4_4:-67085792 | Msa0697090:intron |
| TTCATAGAATATACTTGCCG+TGG | 0.523505 | 4_4:-67084007 | Msa0697090:three_prime_UTR |
| TCATTTAAGATCATTGCTGT+TGG | 0.525819 | 4_4:+67084868 | None:intergenic |
| TCCGGAGCTACGGCGTGCCA+TGG | 0.527864 | 4_4:+67086565 | None:intergenic |
| AAAGAGCTTGAAGTCGGTGC+AGG | 0.533911 | 4_4:+67085336 | None:intergenic |
| CTCTGAGGATTAGCTGGAGG+AGG | 0.538286 | 4_4:+67085612 | None:intergenic |
| GCTGTTGGTTGCATTTCAGA+AGG | 0.554729 | 4_4:+67084883 | None:intergenic |
| AGGACCCACAACAGCATCCA+CGG | 0.556091 | 4_4:+67085407 | None:intergenic |
| TAAGATCCGGATAAACGAAT+GGG | 0.557734 | 4_4:-67086719 | Msa0697090:five_prime_UTR |
| GCTAATCCTCAGAGTGGTGG+CGG | 0.558257 | 4_4:-67085603 | Msa0697090:CDS |
| GCAGGACGTGGTGCAGCACG+TGG | 0.561238 | 4_4:+67085798 | None:intergenic |
| AAATCAAAACATGCTAAACC+AGG | 0.561285 | 4_4:+67084131 | None:intergenic |
| TGCATGCAATATTCATTCAA+AGG | 0.562704 | 4_4:-67085304 | Msa0697090:CDS |
| AGGGCCGTGGATGCTGTTGT+GGG | 0.564421 | 4_4:-67085411 | Msa0697090:CDS |
| TGGAAGTGCAATGGCACACA+GGG | 0.567260 | 4_4:-67085430 | Msa0697090:CDS |
| GAACGTTACCTCCGGAGCTA+CGG | 0.573066 | 4_4:+67086555 | None:intergenic |
| CATTAATATATACCTGGAGC+AGG | 0.580772 | 4_4:+67085780 | None:intergenic |
| TAGAATATACTTGCCGTGGG+TGG | 0.581869 | 4_4:-67084003 | Msa0697090:three_prime_UTR |
| ACATGAAGCAGTAGTTAATG+AGG | 0.581873 | 4_4:-67085373 | Msa0697090:CDS |
| AATCCTCAGAGTGGTGGCGG+CGG | 0.582840 | 4_4:-67085600 | Msa0697090:CDS |
| TATATACCTGGAGCAGGACG+TGG | 0.583895 | 4_4:+67085786 | None:intergenic |
| CTAATAAAGACAGCAATAGG+AGG | 0.588890 | 4_4:+67084060 | None:intergenic |
| ATTGGTTCAACCATTGCTCA+AGG | 0.588907 | 4_4:-67085564 | Msa0697090:intron |
| CTGGAAGTGCAATGGCACAC+AGG | 0.589957 | 4_4:-67085431 | Msa0697090:CDS |
| GATGGATACAACTGCTTGTG+TGG | 0.592085 | 4_4:-67084269 | Msa0697090:three_prime_UTR |
| GCTTGACATACCTTGAGCAA+TGG | 0.600932 | 4_4:+67085554 | None:intergenic |
| GTAAGATCCGGATAAACGAA+TGG | 0.604032 | 4_4:-67086720 | Msa0697090:five_prime_UTR |
| ATGGCACGCCGTAGCTCCGG+AGG | 0.604368 | 4_4:-67086563 | Msa0697090:intron |
| GAAGATTGGATAACATCCGT+GGG | 0.607233 | 4_4:-67083918 | Msa0697090:three_prime_UTR |
| TGCTGATCTCAGTTCCGTAG+TGG | 0.607249 | 4_4:+67084405 | None:intergenic |
| AAAATTTACCTCGACAACCA+TGG | 0.611329 | 4_4:-67086582 | Msa0697090:exon |
| ACGGCGTGCCATGGTTGTCG+AGG | 0.614981 | 4_4:+67086574 | None:intergenic |
| TGAAGATTGGATAACATCCG+TGG | 0.618885 | 4_4:-67083919 | Msa0697090:three_prime_UTR |
| CCAGCTAATCCTCAGAGTGG+TGG | 0.634085 | 4_4:-67085606 | Msa0697090:CDS |
| TCATAGAATATACTTGCCGT+GGG | 0.641061 | 4_4:-67084006 | Msa0697090:three_prime_UTR |
| CTGCCAAAAGAGCTTGAAGT+CGG | 0.641855 | 4_4:+67085330 | None:intergenic |
| TTGCAGTGCATCAACCACTA+CGG | 0.648457 | 4_4:-67084419 | Msa0697090:intron |
| AATAAGTCTTTAGCACCCCA+CGG | 0.652465 | 4_4:+67083902 | None:intergenic |
| AAGCAAAATCAATCCACCCA+CGG | 0.658397 | 4_4:+67083990 | None:intergenic |
| GAGCAGTTACATACTCATTG+TGG | 0.664410 | 4_4:+67084331 | None:intergenic |
| AATCAAAACATGCTAAACCA+GGG | 0.666601 | 4_4:+67084132 | None:intergenic |
| CCACTCTGAGGATTAGCTGG+AGG | 0.669248 | 4_4:+67085609 | None:intergenic |
| GATTAGCTGGAGGAGGAGCG+TGG | 0.675718 | 4_4:+67085619 | None:intergenic |
| CCTCCAGCTAATCCTCAGAG+TGG | 0.682091 | 4_4:-67085609 | Msa0697090:CDS |
| ATACCGCCGCCACCACTCTG+AGG | 0.688047 | 4_4:+67085597 | None:intergenic |
| AAACGAAGGAGTAATAATCG+CGG | 0.716789 | 4_4:+67086618 | None:intergenic |
| GCTTCATGTTGAATGGTGCG+AGG | 0.729803 | 4_4:+67085387 | None:intergenic |
| AAGATTGGATAACATCCGTG+GGG | 0.764004 | 4_4:-67083917 | Msa0697090:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTATTGTAACGATAAT+AGG | + | chr4_4:67084055-67084074 | None:intergenic | 15.0% |
| !!! | TTTTGAAAAATTGTGTATTT+TGG | - | chr4_4:67084150-67084169 | Msa0697090:three_prime_UTR | 15.0% |
| !!! | TTTATTTTAAATTGCTGTAT+TGG | - | chr4_4:67084323-67084342 | Msa0697090:exon | 15.0% |
| !!! | TTATTTTAAATTGCTGTATT+GGG | - | chr4_4:67084324-67084343 | Msa0697090:exon | 15.0% |
| !! | TTCAATCTAAGTATAAATTA+GGG | + | chr4_4:67084383-67084402 | None:intergenic | 15.0% |
| !! | ATTCAATCTAAGTATAAATT+AGG | + | chr4_4:67084384-67084403 | None:intergenic | 15.0% |
| !! | AAATCTTAAATAGTAGTTAT+TGG | - | chr4_4:67085325-67085344 | Msa0697090:CDS | 15.0% |
| !! | AATTATGTTTGTATTCATAT+TGG | - | chr4_4:67085866-67085885 | Msa0697090:intron | 15.0% |
| !!! | TTCAATAAATTTTATTTGTC+TGG | - | chr4_4:67086314-67086333 | Msa0697090:intron | 15.0% |
| !!! | TGATTTTTTTTCAATTATTG+TGG | - | chr4_4:67086433-67086452 | Msa0697090:intron | 15.0% |
| !! | AATACAACATAAAACTGAAA+GGG | + | chr4_4:67084078-67084097 | None:intergenic | 20.0% |
| !! | AAATACAACATAAAACTGAA+AGG | + | chr4_4:67084079-67084098 | None:intergenic | 20.0% |
| !! | AATAAAATAACAGATATCCA+AGG | + | chr4_4:67084309-67084328 | None:intergenic | 20.0% |
| !! | AATAAAAGTAAACCATTCAT+CGG | + | chr4_4:67084651-67084670 | None:intergenic | 20.0% |
| !! | ATACTACATTAATATATACC+TGG | + | chr4_4:67084776-67084795 | None:intergenic | 20.0% |
| !! | TTGTCTAAATAAGATATTGT+GGG | - | chr4_4:67084857-67084876 | Msa0697090:CDS | 20.0% |
| !!! | TGAATGAAATTTTCATTTTC+TGG | - | chr4_4:67085050-67085069 | Msa0697090:intron | 20.0% |
| !! | TGGTACTAAATTTCAATTTA+TGG | - | chr4_4:67085075-67085094 | Msa0697090:intron | 20.0% |
| !!! | TATTTAAGATTTAAACCAAC+AGG | + | chr4_4:67085317-67085336 | None:intergenic | 20.0% |
| !!! | AGTTGAAAACAAATCTTTTA+AGG | + | chr4_4:67085410-67085429 | None:intergenic | 20.0% |
| !! | ATAATTAAGATCATAGTTGT+TGG | + | chr4_4:67085827-67085846 | None:intergenic | 20.0% |
| !!! | ATTGATACTAGAAAGTTTTT+TGG | - | chr4_4:67086382-67086401 | Msa0697090:intron | 20.0% |
| ! | TATTTAAACCCTAGAAAACT+TGG | + | chr4_4:67083880-67083899 | None:intergenic | 25.0% |
| ! | GCTAAAATAACTACGAAAAA+TGG | + | chr4_4:67084209-67084228 | None:intergenic | 25.0% |
| ! | GCAAAGCAAAAAATATCTAA+AGG | + | chr4_4:67084283-67084302 | None:intergenic | 25.0% |
| ! | TGTGTATTCAATACTTGATA+TGG | - | chr4_4:67084431-67084450 | Msa0697090:intron | 25.0% |
| ! | TAATGTTATGATAATAGCTC+TGG | - | chr4_4:67084478-67084497 | Msa0697090:intron | 25.0% |
| ! | GTTATAGTTTAGTAGGTTAT+TGG | - | chr4_4:67084502-67084521 | Msa0697090:intron | 25.0% |
| !!! | CAAAGTGAAATTTTGATTGT+TGG | - | chr4_4:67084566-67084585 | Msa0697090:intron | 25.0% |
| ! | CACAAAGAAAGAAAACAATA+GGG | + | chr4_4:67084706-67084725 | None:intergenic | 25.0% |
| ! | ACACAAAGAAAGAAAACAAT+AGG | + | chr4_4:67084707-67084726 | None:intergenic | 25.0% |
| !! | ATTGTTTTCTTTCTTTGTGT+AGG | - | chr4_4:67084707-67084726 | Msa0697090:intron | 25.0% |
| !!! | TTTTCGTGTTTTTTTAGCAA+AGG | + | chr4_4:67084814-67084833 | None:intergenic | 25.0% |
| !! | CAATATCTTATTTAGACAAC+AGG | + | chr4_4:67084856-67084875 | None:intergenic | 25.0% |
| ! | GTTGTCTAAATAAGATATTG+TGG | - | chr4_4:67084856-67084875 | Msa0697090:CDS | 25.0% |
| ! | TGTCTAAATAAGATATTGTG+GGG | - | chr4_4:67084858-67084877 | Msa0697090:CDS | 25.0% |
| !!! | GAAATTTTCATTTTCTGGTT+TGG | - | chr4_4:67085055-67085074 | Msa0697090:intron | 25.0% |
| ! | ACTAAATTTCAATTTATGGC+AGG | - | chr4_4:67085079-67085098 | Msa0697090:intron | 25.0% |
| !!! | GATTTGTTTTCAACTTTGAA+AGG | - | chr4_4:67085415-67085434 | Msa0697090:CDS | 25.0% |
| !!! | TCTTCTAATGTTTTGAAAAC+CGG | - | chr4_4:67085455-67085474 | Msa0697090:intron | 25.0% |
| ! | TACTGTAAAATCTTTCAAAG+TGG | + | chr4_4:67085713-67085732 | None:intergenic | 25.0% |
| !!! | CTGTTTCTTTTCTTTTTGTA+AGG | - | chr4_4:67085798-67085817 | Msa0697090:CDS | 25.0% |
| ! | AAAATTTCTCAATGACAACA+AGG | + | chr4_4:67086063-67086082 | None:intergenic | 25.0% |
| ! | TTCTTTAAACATCTGAAGAT+TGG | - | chr4_4:67086615-67086634 | Msa0697090:five_prime_UTR | 25.0% |
| !! | CCTTGTAAAAGTTAAGTTTT+GGG | + | chr4_4:67086694-67086713 | None:intergenic | 25.0% |
| TAGAAGCTGAAAAAAAACGA+AGG | + | chr4_4:67083946-67083965 | None:intergenic | 30.0% | |
| ! | TTTCGCATACTATCTTTTCT+AGG | - | chr4_4:67084097-67084116 | Msa0697090:intron | 30.0% |
| ! | TTCGCATACTATCTTTTCTA+GGG | - | chr4_4:67084098-67084117 | Msa0697090:intron | 30.0% |
| !!! | CTTTTCTAGGGTTTTCTTTT+CGG | - | chr4_4:67084110-67084129 | Msa0697090:intron | 30.0% |
| ! | TAATTCTCTTCTCCGATTTT+GGG | - | chr4_4:67084229-67084248 | Msa0697090:three_prime_UTR | 30.0% |
| GATTCATAACTTCCCAAAAT+CGG | + | chr4_4:67084244-67084263 | None:intergenic | 30.0% | |
| !!! | ATTTTTTGCTTTGCATTCCT+TGG | - | chr4_4:67084289-67084308 | Msa0697090:three_prime_UTR | 30.0% |
| !!! | GTGAAATTTTGATTGTTGGT+TGG | - | chr4_4:67084570-67084589 | Msa0697090:intron | 30.0% |
| !! | ATAACAATAAAAGAAGCACC+AGG | + | chr4_4:67084679-67084698 | None:intergenic | 30.0% |
| !!! | TAAATGTTGCTTTTGCGTAT+TGG | - | chr4_4:67085020-67085039 | Msa0697090:intron | 30.0% |
| ATTTCAATTTATGGCAGGTA+TGG | - | chr4_4:67085084-67085103 | Msa0697090:intron | 30.0% | |
| TGCATGCAATATTCATTCAA+AGG | - | chr4_4:67085243-67085262 | Msa0697090:intron | 30.0% | |
| TAGGAAAACAACATACATCT+TGG | + | chr4_4:67085273-67085292 | None:intergenic | 30.0% | |
| !!! | TGTATGTTGTTTTCCTAGTT+CGG | - | chr4_4:67085276-67085295 | Msa0697090:intron | 30.0% |
| TTATTGCTTGAAATTCCTGT+TGG | - | chr4_4:67085299-67085318 | Msa0697090:CDS | 30.0% | |
| TACTGTAAAGTCTTTCAAAC+TGG | + | chr4_4:67085572-67085591 | None:intergenic | 30.0% | |
| AAACCTGCAAATACTATAAC+AGG | - | chr4_4:67085615-67085634 | Msa0697090:CDS | 30.0% | |
| ! | TCATTTAAGATCATTGCTGT+TGG | + | chr4_4:67085682-67085701 | None:intergenic | 30.0% |
| AATCAAAACATGCTAAACCA+GGG | + | chr4_4:67086418-67086437 | None:intergenic | 30.0% | |
| AAATCAAAACATGCTAAACC+AGG | + | chr4_4:67086419-67086438 | None:intergenic | 30.0% | |
| ! | ATCATTTTCCTCCTATATTG+TGG | - | chr4_4:67086456-67086475 | Msa0697090:intron | 30.0% |
| AAAATGATCCACAATATAGG+AGG | + | chr4_4:67086467-67086486 | None:intergenic | 30.0% | |
| AGGAAAATGATCCACAATAT+AGG | + | chr4_4:67086470-67086489 | None:intergenic | 30.0% | |
| ! | TATATTCTATGAAGTTGGTC+TGG | + | chr4_4:67086533-67086552 | None:intergenic | 30.0% |
| GCAAGTATATTCTATGAAGT+TGG | + | chr4_4:67086538-67086557 | None:intergenic | 30.0% | |
| ! | CCCAAAACTTAACTTTTACA+AGG | - | chr4_4:67086691-67086710 | Msa0697090:five_prime_UTR | 30.0% |
| ! | GCCTTGTAAAAGTTAAGTTT+TGG | + | chr4_4:67086695-67086714 | None:intergenic | 30.0% |
| TAAGATCCGGATAAACGAAT+GGG | - | chr4_4:67083828-67083847 | Msa0697090:three_prime_UTR | 35.0% | |
| GAAAACTTGGAAATGGTCTT+GGG | + | chr4_4:67083867-67083886 | None:intergenic | 35.0% | |
| AGAAAACTTGGAAATGGTCT+TGG | + | chr4_4:67083868-67083887 | None:intergenic | 35.0% | |
| ! | AGACCATTTCCAAGTTTTCT+AGG | - | chr4_4:67083868-67083887 | Msa0697090:three_prime_UTR | 35.0% |
| ! | GACCATTTCCAAGTTTTCTA+GGG | - | chr4_4:67083869-67083888 | Msa0697090:three_prime_UTR | 35.0% |
| AACCCTAGAAAACTTGGAAA+TGG | + | chr4_4:67083874-67083893 | None:intergenic | 35.0% | |
| !!! | AATCGCGGAATAGAGTTTTT+TGG | + | chr4_4:67083917-67083936 | None:intergenic | 35.0% |
| AAACGAAGGAGTAATAATCG+CGG | + | chr4_4:67083932-67083951 | None:intergenic | 35.0% | |
| AAAATTTACCTCGACAACCA+TGG | - | chr4_4:67083965-67083984 | Msa0697090:three_prime_UTR | 35.0% | |
| ! | CTAATTCTCTTCTCCGATTT+TGG | - | chr4_4:67084228-67084247 | Msa0697090:three_prime_UTR | 35.0% |
| !! | TGTATTGGGTTGTTTTGTTG+TGG | - | chr4_4:67084338-67084357 | Msa0697090:CDS | 35.0% |
| !! | GATTTGTTGATGCATGTGTT+TGG | - | chr4_4:67084453-67084472 | Msa0697090:intron | 35.0% |
| !! | CTCTGGAGTTATAGTTTAGT+AGG | - | chr4_4:67084495-67084514 | Msa0697090:intron | 35.0% |
| !! | GTTGGTTGGTTTGATCAATA+TGG | - | chr4_4:67084584-67084603 | Msa0697090:intron | 35.0% |
| !! | GTTTACTTTTATTCTCTGCC+TGG | - | chr4_4:67084658-67084677 | Msa0697090:intron | 35.0% |
| CATTAATATATACCTGGAGC+AGG | + | chr4_4:67084770-67084789 | None:intergenic | 35.0% | |
| AACTACTGCTTCATGTTGAA+TGG | + | chr4_4:67085170-67085189 | None:intergenic | 35.0% | |
| ACATGAAGCAGTAGTTAATG+AGG | - | chr4_4:67085174-67085193 | Msa0697090:intron | 35.0% | |
| TTTCAAGCAATAACCGAACT+AGG | + | chr4_4:67085292-67085311 | None:intergenic | 35.0% | |
| ! | TTTGAGATCATCATAGCTGT+TGG | + | chr4_4:67085538-67085557 | None:intergenic | 35.0% |
| ! | TATGACCTTGCCTTTGTTAT+TGG | - | chr4_4:67085925-67085944 | Msa0697090:intron | 35.0% |
| !! | ATGACCTTGCCTTTGTTATT+GGG | - | chr4_4:67085926-67085945 | Msa0697090:intron | 35.0% |
| GTTAACAGTCCCAATAACAA+AGG | + | chr4_4:67085938-67085957 | None:intergenic | 35.0% | |
| CTAGCATATCCATGTAAAAC+TGG | + | chr4_4:67086172-67086191 | None:intergenic | 35.0% | |
| AATGAGTATGTAACTGCTCT+AGG | - | chr4_4:67086220-67086239 | Msa0697090:intron | 35.0% | |
| CTAATAAAGACAGCAATAGG+AGG | + | chr4_4:67086490-67086509 | None:intergenic | 35.0% | |
| CTGCTAATAAAGACAGCAAT+AGG | + | chr4_4:67086493-67086512 | None:intergenic | 35.0% | |
| TTCATAGAATATACTTGCCG+TGG | - | chr4_4:67086540-67086559 | Msa0697090:intron | 35.0% | |
| TCATAGAATATACTTGCCGT+GGG | - | chr4_4:67086541-67086560 | Msa0697090:intron | 35.0% | |
| GTAAGATCCGGATAAACGAA+TGG | - | chr4_4:67083827-67083846 | Msa0697090:three_prime_UTR | 40.0% | |
| !! | ATTGGGTTGTTTTGTTGTGG+AGG | - | chr4_4:67084341-67084360 | Msa0697090:CDS | 40.0% |
| !! | TTCATCGGTTCACTTGAGAT+CGG | + | chr4_4:67084636-67084655 | None:intergenic | 40.0% |
| ATCTCAAGTGAACCGATGAA+TGG | - | chr4_4:67084636-67084655 | Msa0697090:intron | 40.0% | |
| ! | ATTGGTTCAACCATTGCTCA+AGG | - | chr4_4:67084983-67085002 | Msa0697090:intron | 40.0% |
| ! | TTTATGGCAGGTATGGCTTT+TGG | - | chr4_4:67085091-67085110 | Msa0697090:intron | 40.0% |
| ! | TTATGGCAGGTATGGCTTTT+GGG | - | chr4_4:67085092-67085111 | Msa0697090:intron | 40.0% |
| AAACCGGCAAACACTATAAC+AGG | - | chr4_4:67085471-67085490 | Msa0697090:intron | 40.0% | |
| ! | GCTGTTGGTTGTCTTTCAAA+AGG | + | chr4_4:67085523-67085542 | None:intergenic | 40.0% |
| CAGCCTGTTATAGTATTTGC+AGG | + | chr4_4:67085621-67085640 | None:intergenic | 40.0% | |
| ACAGGCTGCTAACATTGATA+TGG | - | chr4_4:67085633-67085652 | Msa0697090:intron | 40.0% | |
| AAACCAACAGACGCTATAAC+AGG | - | chr4_4:67085756-67085775 | Msa0697090:intron | 40.0% | |
| ! | TCCAGAGTTCTTTTTGCACT+CGG | + | chr4_4:67086195-67086214 | None:intergenic | 40.0% |
| GAGCAGTTACATACTCATTG+TGG | + | chr4_4:67086219-67086238 | None:intergenic | 40.0% | |
| !! | TAACTGCTCTAGGCATGTTT+TGG | - | chr4_4:67086230-67086249 | Msa0697090:intron | 40.0% |
| ! | GCGTTTGTTACTGTCTAAGA+TGG | - | chr4_4:67086260-67086279 | Msa0697090:intron | 40.0% |
| !! | TTTTTGGTCTCAAACTTCCC+TGG | - | chr4_4:67086398-67086417 | Msa0697090:intron | 40.0% |
| AAGCAAAATCAATCCACCCA+CGG | + | chr4_4:67086560-67086579 | None:intergenic | 40.0% | |
| TGAAGATTGGATAACATCCG+TGG | - | chr4_4:67086628-67086647 | Msa0697090:five_prime_UTR | 40.0% | |
| GAAGATTGGATAACATCCGT+GGG | - | chr4_4:67086629-67086648 | Msa0697090:five_prime_UTR | 40.0% | |
| AAGATTGGATAACATCCGTG+GGG | - | chr4_4:67086630-67086649 | Msa0697090:five_prime_UTR | 40.0% | |
| AATAAGTCTTTAGCACCCCA+CGG | + | chr4_4:67086648-67086667 | None:intergenic | 40.0% | |
| !!! | AAGTTTTGGGCACTAATCTG+TGG | + | chr4_4:67086681-67086700 | None:intergenic | 40.0% |
| CGTGTTCCCATTCGTTTATC+CGG | + | chr4_4:67083837-67083856 | None:intergenic | 45.0% | |
| !!! | GAGTTTTTTGGTCGTGCGAA+TGG | + | chr4_4:67083905-67083924 | None:intergenic | 45.0% |
| TGAGATGAGAACGTTACCTC+CGG | + | chr4_4:67084003-67084022 | None:intergenic | 45.0% | |
| GCTTGACATACCTTGAGCAA+TGG | + | chr4_4:67084996-67085015 | None:intergenic | 45.0% | |
| !!! | TTTTGGGACTGGAAGTGCAA+TGG | - | chr4_4:67085108-67085127 | Msa0697090:intron | 45.0% |
| CTGCCAAAAGAGCTTGAAGT+CGG | + | chr4_4:67085220-67085239 | None:intergenic | 45.0% | |
| CAGCCTGTTATAGTGTTTGC+CGG | + | chr4_4:67085477-67085496 | None:intergenic | 45.0% | |
| ACAGGCTGCTAACATTGCTA+TGG | - | chr4_4:67085489-67085508 | Msa0697090:intron | 45.0% | |
| ! | GCTGTTGGTTGCATTTCAGA+AGG | + | chr4_4:67085667-67085686 | None:intergenic | 45.0% |
| CAGTCCCAATAACAAAGGCA+AGG | + | chr4_4:67085933-67085952 | None:intergenic | 45.0% | |
| TTGCAGTGCATCAACCACTA+CGG | - | chr4_4:67086128-67086147 | Msa0697090:intron | 45.0% | |
| ! | CAGCAAGTGCCAGTTTTACA+TGG | - | chr4_4:67086160-67086179 | Msa0697090:intron | 45.0% |
| GATGGATACAACTGCTTGTG+TGG | - | chr4_4:67086278-67086297 | Msa0697090:intron | 45.0% | |
| ! | GTTGGTCTGGATTGACTTTG+TGG | + | chr4_4:67086520-67086539 | None:intergenic | 45.0% |
| TAGAATATACTTGCCGTGGG+TGG | - | chr4_4:67086544-67086563 | Msa0697090:intron | 45.0% | |
| TATATACCTGGAGCAGGACG+TGG | + | chr4_4:67084764-67084783 | None:intergenic | 50.0% | |
| GGCGGTATTCTTAGTGGCAT+TGG | - | chr4_4:67084965-67084984 | Msa0697090:intron | 50.0% | |
| ! | TGGAAGTGCAATGGCACACA+GGG | - | chr4_4:67085117-67085136 | Msa0697090:intron | 50.0% |
| GCTTCATGTTGAATGGTGCG+AGG | + | chr4_4:67085163-67085182 | None:intergenic | 50.0% | |
| AAAGAGCTTGAAGTCGGTGC+AGG | + | chr4_4:67085214-67085233 | None:intergenic | 50.0% | |
| !!! | GCACCGACTTCAAGCTCTTT+TGG | - | chr4_4:67085214-67085233 | Msa0697090:intron | 50.0% |
| CAGCCTGTTATAGCGTCTGT+TGG | + | chr4_4:67085762-67085781 | None:intergenic | 50.0% | |
| TGCTGATCTCAGTTCCGTAG+TGG | + | chr4_4:67086145-67086164 | None:intergenic | 50.0% | |
| GCCGAGTGCAAAAAGAACTC+TGG | - | chr4_4:67086191-67086210 | Msa0697090:intron | 50.0% | |
| GAACGTTACCTCCGGAGCTA+CGG | + | chr4_4:67083995-67084014 | None:intergenic | 55.0% | |
| !! | CTCTGAGGATTAGCTGGAGG+AGG | + | chr4_4:67084938-67084957 | None:intergenic | 55.0% |
| !! | CCACTCTGAGGATTAGCTGG+AGG | + | chr4_4:67084941-67084960 | None:intergenic | 55.0% |
| CCTCCAGCTAATCCTCAGAG+TGG | - | chr4_4:67084938-67084957 | Msa0697090:intron | 55.0% | |
| ! | CCACCACTCTGAGGATTAGC+TGG | + | chr4_4:67084944-67084963 | None:intergenic | 55.0% |
| CCAGCTAATCCTCAGAGTGG+TGG | - | chr4_4:67084941-67084960 | Msa0697090:intron | 55.0% | |
| GCTAATCCTCAGAGTGGTGG+CGG | - | chr4_4:67084944-67084963 | Msa0697090:intron | 55.0% | |
| !!! | GCAGGTATGGCTTTTGGGAC+TGG | - | chr4_4:67085097-67085116 | Msa0697090:intron | 55.0% |
| ! | CTGGAAGTGCAATGGCACAC+AGG | - | chr4_4:67085116-67085135 | Msa0697090:intron | 55.0% |
| AGGACCCACAACAGCATCCA+CGG | + | chr4_4:67085143-67085162 | None:intergenic | 55.0% | |
| ! | GATTAGCTGGAGGAGGAGCG+TGG | + | chr4_4:67084931-67084950 | None:intergenic | 60.0% |
| !! | AATCCTCAGAGTGGTGGCGG+CGG | - | chr4_4:67084947-67084966 | Msa0697090:intron | 60.0% |
| ! | GGTGGCGGCGGTATTCTTAG+TGG | - | chr4_4:67084959-67084978 | Msa0697090:intron | 60.0% |
| AGGGCCGTGGATGCTGTTGT+GGG | - | chr4_4:67085136-67085155 | Msa0697090:intron | 60.0% | |
| ACGGCGTGCCATGGTTGTCG+AGG | + | chr4_4:67083976-67083995 | None:intergenic | 65.0% | |
| ACCATGGCACGCCGTAGCTC+CGG | - | chr4_4:67083981-67084000 | Msa0697090:three_prime_UTR | 65.0% | |
| ATACCGCCGCCACCACTCTG+AGG | + | chr4_4:67084953-67084972 | None:intergenic | 65.0% | |
| TGCAATGGCACACAGGGCCG+TGG | - | chr4_4:67085123-67085142 | Msa0697090:intron | 65.0% | |
| CAGGGCCGTGGATGCTGTTG+TGG | - | chr4_4:67085135-67085154 | Msa0697090:intron | 65.0% | |
| TCCGGAGCTACGGCGTGCCA+TGG | + | chr4_4:67083985-67084004 | None:intergenic | 70.0% | |
| ATGGCACGCCGTAGCTCCGG+AGG | - | chr4_4:67083984-67084003 | Msa0697090:three_prime_UTR | 70.0% | |
| CGTGGTGCAGCACGTGGAGC+TGG | + | chr4_4:67084746-67084765 | None:intergenic | 70.0% | |
| GCAGGACGTGGTGCAGCACG+TGG | + | chr4_4:67084752-67084771 | None:intergenic | 70.0% | |
| GCTGCACCACGTCCTGCTCC+AGG | - | chr4_4:67084755-67084774 | Msa0697090:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 67083825 | 67086744 | 67083825 | ID=Msa0697090;Name=Msa0697090 |
| chr4_4 | mRNA | 67083825 | 67086744 | 67083825 | ID=Msa0697090-mRNA-1;Parent=Msa0697090;Name=Msa0697090-mRNA-1;_AED=0.10;_eAED=0.10;_QI=159|0.66|0.85|0.85|0.83|0.71|7|489|172 |
| chr4_4 | exon | 67083825 | 67084094 | 67083825 | ID=Msa0697090-mRNA-1:exon:19637;Parent=Msa0697090-mRNA-1 |
| chr4_4 | exon | 67084118 | 67084435 | 67084118 | ID=Msa0697090-mRNA-1:exon:19636;Parent=Msa0697090-mRNA-1 |
| chr4_4 | exon | 67084840 | 67084932 | 67084840 | ID=Msa0697090-mRNA-1:exon:19635;Parent=Msa0697090-mRNA-1 |
| chr4_4 | exon | 67085293 | 67085468 | 67085293 | ID=Msa0697090-mRNA-1:exon:19634;Parent=Msa0697090-mRNA-1 |
| chr4_4 | exon | 67085565 | 67085645 | 67085565 | ID=Msa0697090-mRNA-1:exon:19633;Parent=Msa0697090-mRNA-1 |
| chr4_4 | exon | 67085793 | 67085840 | 67085793 | ID=Msa0697090-mRNA-1:exon:19632;Parent=Msa0697090-mRNA-1 |
| chr4_4 | exon | 67086564 | 67086744 | 67086564 | ID=Msa0697090-mRNA-1:exon:19631;Parent=Msa0697090-mRNA-1 |
| chr4_4 | five_prime_UTR | 67086586 | 67086744 | 67086586 | ID=Msa0697090-mRNA-1:five_prime_utr;Parent=Msa0697090-mRNA-1 |
| chr4_4 | CDS | 67086564 | 67086585 | 67086564 | ID=Msa0697090-mRNA-1:cds;Parent=Msa0697090-mRNA-1 |
| chr4_4 | CDS | 67085793 | 67085840 | 67085793 | ID=Msa0697090-mRNA-1:cds;Parent=Msa0697090-mRNA-1 |
| chr4_4 | CDS | 67085565 | 67085645 | 67085565 | ID=Msa0697090-mRNA-1:cds;Parent=Msa0697090-mRNA-1 |
| chr4_4 | CDS | 67085293 | 67085468 | 67085293 | ID=Msa0697090-mRNA-1:cds;Parent=Msa0697090-mRNA-1 |
| chr4_4 | CDS | 67084840 | 67084932 | 67084840 | ID=Msa0697090-mRNA-1:cds;Parent=Msa0697090-mRNA-1 |
| chr4_4 | CDS | 67084337 | 67084435 | 67084337 | ID=Msa0697090-mRNA-1:cds;Parent=Msa0697090-mRNA-1 |
| chr4_4 | three_prime_UTR | 67084118 | 67084336 | 67084118 | ID=Msa0697090-mRNA-1:three_prime_utr;Parent=Msa0697090-mRNA-1 |
| chr4_4 | three_prime_UTR | 67083825 | 67084094 | 67083825 | ID=Msa0697090-mRNA-1:three_prime_utr;Parent=Msa0697090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
