AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1316200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1316200 MtrunA17_Chr4g0004091 82.353 85 14 1 15 99 162 245 9.04e-41 139
Msa1316200 MtrunA17_Chr4g0004831 70.588 85 24 1 15 99 157 240 2.32e-32 117
Msa1316200 MtrunA17_Chr7g0242351 90.909 33 3 0 130 162 129 161 1.55e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1316200 AT3G16170.1 44.706 85 39 2 15 99 177 253 4.85e-12 64.3

Find 217 sgRNAs with CRISPR-Local

Find 441 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGACATGATTTGATTATT+TGG 0.151687 8_4:-16201373 Msa1316200:five_prime_UTR
GTCAGAGTTGCTTGAAATTA+TGG 0.160584 8_4:-16205883 Msa1316200:five_prime_UTR
TTGAATTATGGGACTGATAT+TGG 0.174250 8_4:-16204339 Msa1316200:five_prime_UTR
GAAATTATGGTTCTACATTT+TGG 0.175123 8_4:-16205870 Msa1316200:five_prime_UTR
ACTAACTCTTCCTATGTTAT+AGG 0.177052 8_4:-16201720 Msa1316200:five_prime_UTR
GCAGATGGTCTGGCTGTTAC+TGG 0.190384 8_4:-16203389 Msa1316200:five_prime_UTR
TTCTTGGTGTAGTAATTAAT+TGG 0.196867 8_4:-16201174 Msa1316200:five_prime_UTR
TGTATTAGTTGTTCTGATTC+AGG 0.198011 8_4:-16202262 Msa1316200:five_prime_UTR
TAGCAAAGGTTATATGATTT+TGG 0.198437 8_4:-16204260 Msa1316200:five_prime_UTR
ATTTGAAAATTTCATATAAA+AGG 0.216554 8_4:+16201068 None:intergenic
CATATAACAAGGGCCTATTT+TGG 0.217274 8_4:-16204847 Msa1316200:five_prime_UTR
AGAAATGGACATTCACAAAA+TGG 0.249033 8_4:-16200825 Msa1316200:CDS
CCACATTTAATGACACATTA+AGG 0.259081 8_4:-16202747 Msa1316200:five_prime_UTR
TAATGCTCAAGGGTCAAATA+TGG 0.261472 8_4:+16204481 None:intergenic
CACATCGATAATATCATTCT+TGG 0.263207 8_4:-16201190 Msa1316200:five_prime_UTR
GTGGAGAACATCCTGGTTAT+TGG 0.266622 8_4:-16202631 Msa1316200:five_prime_UTR
GGACATTTGTTGGTTGCCTT+GGG 0.273965 8_4:-16202972 Msa1316200:five_prime_UTR
AATACTTGACAACAACAATT+TGG 0.278361 8_4:+16200308 None:intergenic
TCTGTGAACATTAAGAATTC+AGG 0.289712 8_4:-16201125 Msa1316200:five_prime_UTR
AATTCAAACTACTTTAAATA+AGG 0.296473 8_4:+16201964 None:intergenic
ATATTTGACCCTTGAGCATT+AGG 0.298623 8_4:-16204479 Msa1316200:five_prime_UTR
TGCTATCAACATATGATATA+AGG 0.299792 8_4:+16204278 None:intergenic
TGGACATTTGTTGGTTGCCT+TGG 0.301067 8_4:-16202973 Msa1316200:five_prime_UTR
TTCAAGTCTGTCTGCAGGTT+TGG 0.305191 8_4:-16203430 Msa1316200:five_prime_UTR
GCACCTTCATCCTCCAAAAT+AGG 0.311181 8_4:+16204834 None:intergenic
CTTTATCACAAGATGTATTC+TGG 0.311204 8_4:-16201898 Msa1316200:five_prime_UTR
CTTCTCTGGTGTTTGTAAGA+TGG 0.311849 8_4:-16201627 Msa1316200:five_prime_UTR
TGGCGACTTCAATTGCCTTT+AGG 0.318075 8_4:-16206036 Msa1316200:intron
GCATTGAACTCACATTTATA+TGG 0.320058 8_4:-16201274 Msa1316200:five_prime_UTR
GCTGAAGCTGGATGGTATTA+AGG 0.320722 8_4:-16203988 Msa1316200:five_prime_UTR
CAAAACAGAGAGACATTTCA+TGG 0.323574 8_4:-16206115 Msa1316200:intron
TATTAGGAACAGGCAGAATA+TGG 0.324406 8_4:+16200868 None:intergenic
GGGCTTTGAGTATCATGCTT+GGG 0.325151 8_4:-16202287 Msa1316200:five_prime_UTR
CTCTTCTTAGAGGAATTATT+AGG 0.332256 8_4:+16200852 None:intergenic
GAATTGTATGTTACATACTA+TGG 0.334240 8_4:+16201492 None:intergenic
CATTAATTTGAATGAGTCAT+TGG 0.343657 8_4:-16201406 Msa1316200:five_prime_UTR
GCCTCAAACCCATCAATTCT+TGG 0.350859 8_4:-16205397 Msa1316200:intron
CTATAATTCATGTCTTACTA+TGG 0.351625 8_4:+16202550 None:intergenic
GCTATCTTGAATCTGTTATA+AGG 0.361376 8_4:-16201579 Msa1316200:five_prime_UTR
AGAGCGGCGAAAACGATTTC+TGG 0.365404 8_4:+16207072 None:intergenic
AGCATAATGAAATGATATAA+AGG 0.366473 8_4:-16201296 Msa1316200:five_prime_UTR
AAGAGAAAAGAGAGAGAAAC+GGG 0.368057 8_4:-16207433 None:intergenic
ATTTCTACTACTCTTCTTAG+AGG 0.368543 8_4:+16200842 None:intergenic
TCAAACCTTCTTCTTGTGCT+TGG 0.370945 8_4:-16200265 Msa1316200:CDS
ATACATTCTTGCATTCTTGC+TGG 0.372714 8_4:-16205452 Msa1316200:five_prime_UTR
TTCTCTGGTGTTTGTAAGAT+GGG 0.373179 8_4:-16201626 Msa1316200:five_prime_UTR
AGAAATTTACCAAGAATTGA+TGG 0.374874 8_4:+16205388 None:intergenic
GAAATGGACATTCACAAAAT+GGG 0.380131 8_4:-16200824 Msa1316200:CDS
AATTAATTGGATACTCTTAG+AGG 0.381202 8_4:-16201161 Msa1316200:five_prime_UTR
CTTCAAATCAAATAGAATAA+AGG 0.384179 8_4:+16204447 None:intergenic
GTCCCTTCTTGCAGATGGTC+TGG 0.395924 8_4:-16203399 Msa1316200:five_prime_UTR
GTACAACCCTGCATTTAATC+AGG 0.396598 8_4:-16202848 Msa1316200:five_prime_UTR
TCTGTGTTCCTGTTCACGTT+TGG 0.404197 8_4:-16202484 Msa1316200:five_prime_UTR
TTAGAGGAATTATTAGGAAC+AGG 0.407537 8_4:+16200858 None:intergenic
GCCTTGGATGTGGCTGTCAA+TGG 0.409273 8_4:-16204071 Msa1316200:five_prime_UTR
TGTTTAGAAAATAGTGAAGT+AGG 0.409335 8_4:+16202825 None:intergenic
AAAGAGAAAAGAGAGAGAAA+CGG 0.412258 8_4:-16207434 None:intergenic
TCTAAGAAGAGTAGTAGAAA+TGG 0.413474 8_4:-16200840 Msa1316200:CDS
GCCTTCTTCACTGGTCCTAC+AGG 0.414576 8_4:-16200541 Msa1316200:intron
TGCATTTCAAGTCTGTCTGC+AGG 0.423557 8_4:-16203435 Msa1316200:five_prime_UTR
TGGCTGAATCTATAGCTTTG+AGG 0.427204 8_4:-16206059 Msa1316200:five_prime_UTR
AGACAGAGGACCACATTGTT+GGG 0.427721 8_4:+16206631 None:intergenic
CTTTGGATTAGGTGAAGATT+CGG 0.431233 8_4:-16200655 Msa1316200:intron
CGGGGAATGTGGTATGGTAT+TGG 0.431968 8_4:-16204310 Msa1316200:five_prime_UTR
AATTGCCATGTTATGAAGTC+TGG 0.432315 8_4:-16201746 Msa1316200:five_prime_UTR
GCAGCCTCACTTTCCCACTT+TGG 0.433441 8_4:-16206079 Msa1316200:five_prime_UTR
CTCTAATTCGACCGCGGATG+AGG 0.433910 8_4:-16202717 Msa1316200:five_prime_UTR
CTTGGAACTTCCCTACTTTG+TGG 0.435724 8_4:-16200247 Msa1316200:CDS
TGACTACAAAGTTGCTTATG+AGG 0.436885 8_4:-16204016 Msa1316200:five_prime_UTR
AAGGTACTCCAAACGTGAAC+AGG 0.439557 8_4:+16202476 None:intergenic
GTCTGTGATATCCCTCCAAC+TGG 0.443028 8_4:-16206612 Msa1316200:five_prime_UTR
CTCATGGCTAATACCAAGCT+TGG 0.444317 8_4:-16201225 Msa1316200:five_prime_UTR
ATTCAAATTAATGATTCAAA+AGG 0.445879 8_4:+16201416 None:intergenic
GTATTCTCTATTATTACAGT+TGG 0.447728 8_4:-16200400 Msa1316200:CDS
TTCTCTATTATTACAGTTGG+AGG 0.450730 8_4:-16200397 Msa1316200:CDS
ACCAAGAATTGATGGGTTTG+AGG 0.454450 8_4:+16205396 None:intergenic
AAATTCTTTGTCAGAAACCT+TGG 0.460069 8_4:+16204043 None:intergenic
GCAGTGTCCCTTCTTGCAGA+TGG 0.462165 8_4:-16203404 Msa1316200:five_prime_UTR
AGACAAATTGCCTTCTTCAC+TGG 0.464133 8_4:-16200550 Msa1316200:CDS
AGAAACGCTGGAAGCAGAAA+AGG 0.466098 8_4:-16207365 Msa1316200:five_prime_UTR
TCCTATGTTATAGGCTCAAA+GGG 0.466569 8_4:-16201711 Msa1316200:five_prime_UTR
TTGTACACTAGCGGGACAAC+AGG 0.468065 8_4:-16200624 Msa1316200:CDS
GCAGGTGTTGGCCTTGGATG+TGG 0.469671 8_4:-16204081 Msa1316200:intron
TTGCAGTAAAAGTCTATCAA+TGG 0.472340 8_4:+16201470 None:intergenic
CACAAGATGAAATATCAAAC+AGG 0.475511 8_4:+16202039 None:intergenic
TATGGAGCAGACCCATCATC+TGG 0.478875 8_4:+16202568 None:intergenic
GGCTTTGAGTATCATGCTTG+GGG 0.484533 8_4:-16202286 Msa1316200:five_prime_UTR
AATCTGCTAAGATGAATGTC+TGG 0.487923 8_4:+16202906 None:intergenic
TGGGTTAACATATTTCTTTG+TGG 0.488049 8_4:-16204804 Msa1316200:five_prime_UTR
AAGTTCCAAGCACAAGAAGA+AGG 0.489149 8_4:+16200260 None:intergenic
GTATGGTTTATGGCCGTCGA+TGG 0.489821 8_4:-16202948 Msa1316200:five_prime_UTR
AATGCTCAAGGGTCAAATAT+GGG 0.489935 8_4:+16204482 None:intergenic
CTTATGAGTCATCCAGATGA+TGG 0.490635 8_4:-16202580 Msa1316200:five_prime_UTR
TATGAGGAAATTGCTGAAGC+TGG 0.492669 8_4:-16204000 Msa1316200:five_prime_UTR
GGGGCTTTGAGTATCATGCT+TGG 0.492882 8_4:-16202288 Msa1316200:five_prime_UTR
AAGAAGAAGGTTTGAAAGGA+TGG 0.493952 8_4:+16200273 None:intergenic
TTCCTATGTTATAGGCTCAA+AGG 0.494413 8_4:-16201712 Msa1316200:five_prime_UTR
AAGAGAGACGGCGAGAGAAG+AGG 0.494605 8_4:-16207296 Msa1316200:five_prime_UTR
TTTCAAGCTGTTGTTGTAGT+CGG 0.495225 8_4:-16204220 Msa1316200:five_prime_UTR
CAGACAGAGGACCACATTGT+TGG 0.495813 8_4:+16206630 None:intergenic
TTGGATGTGGCTGTCAATGG+AGG 0.496098 8_4:-16204068 Msa1316200:five_prime_UTR
AGGTACCAAGATAATGTCAA+TGG 0.498319 8_4:+16201088 None:intergenic
AGACAAATTCAAATGAGAAC+CGG 0.498664 8_4:+16201677 None:intergenic
CAGATGGTCTGGCTGTTACT+GGG 0.499341 8_4:-16203388 Msa1316200:five_prime_UTR
TTATAAGGTGCATGACTCAT+TGG 0.501330 8_4:-16201564 Msa1316200:five_prime_UTR
AGTCTGTCTGCAGGTTTGGT+TGG 0.501509 8_4:-16203426 Msa1316200:five_prime_UTR
AGCCAGACCATCTGCAAGAA+GGG 0.503762 8_4:+16203397 None:intergenic
AGATACCCATGGACATTTGT+TGG 0.507005 8_4:-16202982 Msa1316200:five_prime_UTR
TGGTCTGGCTGTTACTGGGC+AGG 0.507254 8_4:-16203384 Msa1316200:intron
GGTTGCACCTCTTCTACAGT+GGG 0.508466 8_4:-16202321 Msa1316200:five_prime_UTR
TGCAATGCCACCACAAAGTA+GGG 0.510435 8_4:+16200237 None:intergenic
GACATTTGTTGGTTGCCTTG+GGG 0.510883 8_4:-16202971 Msa1316200:five_prime_UTR
AGGTGGACAAGCTTTGTGAC+AGG 0.514120 8_4:-16204192 Msa1316200:five_prime_UTR
GGAGCAACTTCAACGGCGAC+CGG 0.515365 8_4:-16207099 Msa1316200:five_prime_UTR
GGGACTGATATTGGAACTGA+CGG 0.518405 8_4:-16204330 Msa1316200:five_prime_UTR
GATGAAGAAGACTGAGATGA+TGG 0.518971 8_4:-16204689 Msa1316200:five_prime_UTR
ATTCATCATGCTTTGTTGAG+TGG 0.519397 8_4:-16206657 Msa1316200:five_prime_UTR
ACATTTGTTGGTTGCCTTGG+GGG 0.519735 8_4:-16202970 Msa1316200:five_prime_UTR
TTGTCTGCTAGCACTGATGA+AGG 0.519903 8_4:+16206476 None:intergenic
ACCTGTAGGACCAGTGAAGA+AGG 0.520142 8_4:+16200540 None:intergenic
TTGCAATGCCACCACAAAGT+AGG 0.522397 8_4:+16200236 None:intergenic
GAAATTTACCAAGAATTGAT+GGG 0.523336 8_4:+16205389 None:intergenic
TGGTTGCACCTCTTCTACAG+TGG 0.523657 8_4:-16202322 Msa1316200:five_prime_UTR
CTGGAAGCAGAAAAGGAAAA+CGG 0.524696 8_4:-16207358 Msa1316200:five_prime_UTR
TCTGTTACTATTATGTCAAG+AGG 0.527285 8_4:-16202883 Msa1316200:five_prime_UTR
GTCGCTGTGGCGGAATATCA+AGG 0.528675 8_4:-16202603 Msa1316200:five_prime_UTR
AAGTAGGCCTGATTAAATGC+AGG 0.531178 8_4:+16202841 None:intergenic
TCCCTTTGAGCCTATAACAT+AGG 0.532688 8_4:+16201710 None:intergenic
TCTAACAGTATACAATGCAT+TGG 0.532890 8_4:+16202523 None:intergenic
AGGCAACCAACAAATGTCCA+TGG 0.535521 8_4:+16202976 None:intergenic
CCTTAATGTGTCATTAAATG+TGG 0.538448 8_4:+16202747 None:intergenic
TGTTCTGATTCAGGCTGCAG+TGG 0.540068 8_4:-16202253 Msa1316200:five_prime_UTR
ATGATCTTGCCACTTGAGAC+AGG 0.540125 8_4:-16205813 Msa1316200:intron
GGAACTTCCCTACTTTGTGG+TGG 0.543624 8_4:-16200244 Msa1316200:CDS
TTCAAAATGAACCTTACCTA+AGG 0.546225 8_4:-16200986 Msa1316200:CDS
AGCTATAGATTCAGCCAAAG+TGG 0.551626 8_4:+16206065 None:intergenic
AGGAACACAGAATTTGTGCT+TGG 0.554925 8_4:+16202496 None:intergenic
AAAGAGAAACCTAATGCTCA+AGG 0.557434 8_4:+16204470 None:intergenic
AACGAGGAAAGGAGAAACGC+TGG 0.559120 8_4:-16207377 Msa1316200:five_prime_UTR
TCTCTATTATTACAGTTGGA+GGG 0.566642 8_4:-16200396 Msa1316200:CDS
CAGCCAGACCATCTGCAAGA+AGG 0.567876 8_4:+16203396 None:intergenic
GCACAAGAAGAAGGTTTGAA+AGG 0.568007 8_4:+16200269 None:intergenic
ACGGGAACGAGAGAGAAAGA+AGG 0.568350 8_4:-16207415 Msa1316200:five_prime_UTR
GAGAGAAAGAAGGAAGTCGC+CGG 0.568658 8_4:-16207405 Msa1316200:five_prime_UTR
AGGATGAAGGTGCATGTCTG+TGG 0.573626 8_4:-16204824 Msa1316200:five_prime_UTR
CAATAGCGCAAATACAGTGC+AGG 0.578498 8_4:+16206511 None:intergenic
AACTGACGGGGAATGTGGTA+TGG 0.578531 8_4:-16204316 Msa1316200:five_prime_UTR
ATATCATATGTTGATAGCAA+AGG 0.579023 8_4:-16204274 Msa1316200:five_prime_UTR
AGAAGAGGAAAGTGTTGTGT+TGG 0.580296 8_4:-16207281 Msa1316200:five_prime_UTR
GGACTGATATTGGAACTGAC+GGG 0.581432 8_4:-16204329 Msa1316200:five_prime_UTR
CACCAGGTGTTAGATACCCA+TGG 0.581790 8_4:-16202993 Msa1316200:intron
GCTATAGATTCAGCCAAAGT+GGG 0.582150 8_4:+16206066 None:intergenic
TGTGGTGGCATTGCAAACCT+TGG 0.582228 8_4:-16200229 Msa1316200:CDS
AAAAGTCGTCAGTTTCACCT+TGG 0.584041 8_4:+16202172 None:intergenic
AAAGTGCTGCGCTATTAAAG+AGG 0.588429 8_4:-16201342 Msa1316200:five_prime_UTR
TCAGCCAAAGTGGGAAAGTG+AGG 0.591035 8_4:+16206075 None:intergenic
TTATGAGTCATCCAGATGAT+GGG 0.591211 8_4:-16202579 Msa1316200:five_prime_UTR
TCAAAGGGATGAGATGATAC+CGG 0.591533 8_4:-16201696 Msa1316200:five_prime_UTR
AGAATCATACCTGTCTCAAG+TGG 0.592594 8_4:+16205804 None:intergenic
GGGCTTCTTAATGCAACATG+TGG 0.594840 8_4:-16200376 Msa1316200:CDS
GAAAACGATTTCTGGTGCGC+CGG 0.595717 8_4:+16207080 None:intergenic
TTAAGGCTGAAGGTGAAGCT+AGG 0.598267 8_4:-16203971 Msa1316200:five_prime_UTR
GGTGGACAAGCTTTGTGACA+GGG 0.600958 8_4:-16204191 Msa1316200:intron
TGGATGTGGCTGTCAATGGA+GGG 0.601202 8_4:-16204067 Msa1316200:five_prime_UTR
TTGGTTTGTGATTTGAAACA+CGG 0.602056 8_4:+16202191 None:intergenic
GAACTCACATTTATATGGCT+AGG 0.603522 8_4:-16201269 Msa1316200:five_prime_UTR
CTGGATGGTATTAAGGCTGA+AGG 0.605506 8_4:-16203981 Msa1316200:five_prime_UTR
GGTAGTTTATCCTCAGCTGA+TGG 0.610299 8_4:+16202060 None:intergenic
AAATGGACATTCACAAAATG+GGG 0.610443 8_4:-16200823 Msa1316200:CDS
GGCAACCAACAAATGTCCAT+GGG 0.610474 8_4:+16202977 None:intergenic
GTGCTGCGCTATTAAAGAGG+TGG 0.611390 8_4:-16201339 Msa1316200:five_prime_UTR
GGCTGTCAATGGAGGGACCA+AGG 0.612660 8_4:-16204060 Msa1316200:five_prime_UTR
GAATTATGTCATGCCAAGCT+TGG 0.613998 8_4:+16201212 None:intergenic
TTGGATCGGAGCAACTTCAA+CGG 0.616745 8_4:-16207106 Msa1316200:five_prime_UTR
TGTTGTAGTCGGATCAGAGG+TGG 0.622495 8_4:-16204209 Msa1316200:five_prime_UTR
AGGAAATTGCTGAAGCTGGA+TGG 0.623359 8_4:-16203996 Msa1316200:five_prime_UTR
ATTGGACATAGTCGCTGTGG+CGG 0.623980 8_4:-16202613 Msa1316200:five_prime_UTR
GGCTTCTTAATGCAACATGT+GGG 0.624011 8_4:-16200375 Msa1316200:CDS
AGAACTGCACACATATAACA+AGG 0.625816 8_4:-16204858 Msa1316200:five_prime_UTR
AGCGACTATGTCCAATAACC+AGG 0.626209 8_4:+16202620 None:intergenic
TCCATTGACAGCCACATCCA+AGG 0.628433 8_4:+16204070 None:intergenic
GCTAGCAGACAATTGAAATG+AGG 0.629593 8_4:-16206465 Msa1316200:intron
TGTCTGCTAGCACTGATGAA+GGG 0.630304 8_4:+16206477 None:intergenic
ATTGGAACTGACGGGGAATG+TGG 0.631334 8_4:-16204321 Msa1316200:five_prime_UTR
TGTTGTTGTAGTCGGATCAG+AGG 0.631350 8_4:-16204212 Msa1316200:five_prime_UTR
AGCACAAAGAGCCACAACAA+TGG 0.636601 8_4:+16202411 None:intergenic
TAGGTTGCAGAGAAAAGCTG+AGG 0.646000 8_4:-16203952 Msa1316200:intron
AAGAGAAACCTAATGCTCAA+GGG 0.646215 8_4:+16204471 None:intergenic
CTGAATCTATAGCTTTGAGG+TGG 0.647177 8_4:-16206056 Msa1316200:five_prime_UTR
GGATGAAGGTGCATGTCTGT+GGG 0.653172 8_4:-16204823 Msa1316200:five_prime_UTR
TTGTGGCAAAAGTTTCATTG+TGG 0.656530 8_4:-16204787 Msa1316200:five_prime_UTR
GTTATTGGACATAGTCGCTG+TGG 0.659023 8_4:-16202616 Msa1316200:five_prime_UTR
CTTCTGTTAAACAGAAACAG+AGG 0.660498 8_4:+16202367 None:intergenic
TGGCATTGCAAACCTTGGAG+TGG 0.662345 8_4:-16200224 Msa1316200:CDS
TCTACATTGGAAATGTGATG+TGG 0.665628 8_4:-16206576 Msa1316200:five_prime_UTR
AGTAGGCCTGATTAAATGCA+GGG 0.666271 8_4:+16202842 None:intergenic
AAACTGTAACAGCTACGACA+AGG 0.667234 8_4:+16202457 None:intergenic
TGGTGAAAACGAAAGAGAGA+CGG 0.672189 8_4:-16207308 Msa1316200:five_prime_UTR
GTGTTTCAAATCACAAACCA+AGG 0.673597 8_4:-16202189 Msa1316200:five_prime_UTR
GACTGATATTGGAACTGACG+GGG 0.676586 8_4:-16204328 Msa1316200:five_prime_UTR
TATTGATGCAGCCTCATCCG+CGG 0.677207 8_4:+16202706 None:intergenic
ATATTGAGTACTGAAGATCA+TGG 0.680453 8_4:-16200936 Msa1316200:CDS
ACACCACGGAGCAACATCTG+TGG 0.681879 8_4:-16203459 Msa1316200:five_prime_UTR
AATGAAATGAATGAAGACCA+AGG 0.691600 8_4:-16207249 Msa1316200:intron
ATTGGAAATGTGATGTGGAG+TGG 0.694431 8_4:-16206571 Msa1316200:five_prime_UTR
TGGAGGGATATCACAGACAG+AGG 0.699065 8_4:+16206617 None:intergenic
GAAACAGAGGAAACTCTGCA+AGG 0.701303 8_4:+16202380 None:intergenic
GCATCATTAGCTGCACACCA+CGG 0.701749 8_4:-16203473 Msa1316200:five_prime_UTR
TCTGAGATAAGAACCATCGA+CGG 0.702119 8_4:+16202935 None:intergenic
GCTCTGGATTTAGAATCAGA+AGG 0.704129 8_4:-16207054 Msa1316200:intron
TTCTGATTCTAAATCCAGAG+CGG 0.710095 8_4:+16207056 None:intergenic
TTATGACTCTAATTCGACCG+CGG 0.719978 8_4:-16202723 Msa1316200:five_prime_UTR
GTAAACCAGACTTCATAACA+TGG 0.720190 8_4:+16201741 None:intergenic
GAACTGCACACATATAACAA+GGG 0.730274 8_4:-16204857 Msa1316200:five_prime_UTR
CAGCCACAGATGTTGCTCCG+TGG 0.739945 8_4:+16203456 None:intergenic
TGAGTGGATTCCCAACAATG+TGG 0.745572 8_4:-16206641 Msa1316200:five_prime_UTR
TTATATGGCTAGGTACCCTG+AGG 0.745699 8_4:-16201259 Msa1316200:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGTTTGTTTATTTTTAAAA+GGG - chr8_4:16200727-16200746 Msa1316200:intron 10.0%
!!! TTTTTTTTTTTTGCTTTTTT+AGG - chr8_4:16203216-16203235 Msa1316200:intron 10.0%
!! ATAATGAATGATAATAATAT+GGG + chr8_4:16203486-16203505 None:intergenic 10.0%
!! TATAATGAATGATAATAATA+TGG + chr8_4:16203487-16203506 None:intergenic 10.0%
!! ATTTGAAAATTTCATATAAA+AGG + chr8_4:16206574-16206593 None:intergenic 10.0%
!!! GATGTTTGTTTATTTTTAAA+AGG - chr8_4:16200726-16200745 Msa1316200:intron 15.0%
!! AATTTATTCTGATACTTATA+TGG - chr8_4:16201898-16201917 Msa1316200:five_prime_UTR 15.0%
!! ATAGAATGAAGATTATATAT+AGG + chr8_4:16202061-16202080 None:intergenic 15.0%
!!! TATTTTCAAAGATTCTTTTA+TGG - chr8_4:16203079-16203098 Msa1316200:intron 15.0%
!!! AAATTGTTCAATGTTATTTT+AGG - chr8_4:16204007-16204026 Msa1316200:five_prime_UTR 15.0%
!!! TTTTTTCTTTTAGAAAGATA+TGG + chr8_4:16204971-16204990 None:intergenic 15.0%
!!! AAAAAATCATTACATTTTTC+TGG - chr8_4:16204986-16205005 Msa1316200:intron 15.0%
!! AATTCAAACTACTTTAAATA+AGG + chr8_4:16205678-16205697 None:intergenic 15.0%
!! ATTCAAATTAATGATTCAAA+AGG + chr8_4:16206226-16206245 None:intergenic 15.0%
!!! TTTGTTTTTCCAGATTTTTT+TGG - chr8_4:16200514-16200533 Msa1316200:intron 20.0%
!!! GTTTTTTCGTTTTTAAGTTA+TGG - chr8_4:16200688-16200707 Msa1316200:intron 20.0%
!!! GTTATGGTTTTATTTTGAAT+TGG - chr8_4:16200704-16200723 Msa1316200:intron 20.0%
!! AATCAACAAATTTCAGTAAA+TGG + chr8_4:16200859-16200878 None:intergenic 20.0%
!!! TTTTTATTATTTTCTTCTCG+AGG - chr8_4:16201218-16201237 Msa1316200:five_prime_UTR 20.0%
!! AACACGGTAAATAAAATTTA+AGG + chr8_4:16201291-16201310 None:intergenic 20.0%
!!! TTTTATTTACCGTGTTTTAT+AGG - chr8_4:16201295-16201314 Msa1316200:five_prime_UTR 20.0%
!! CAATACTTAATTTACCATAT+AGG + chr8_4:16201681-16201700 None:intergenic 20.0%
!!! GTGCAAAATTTTGATATTTT+GGG + chr8_4:16201932-16201951 None:intergenic 20.0%
!!! TTCTAAAGAATATCAAAAAG+TGG + chr8_4:16202222-16202241 None:intergenic 20.0%
!!! CTTACAACATTTTAACAATT+TGG + chr8_4:16202310-16202329 None:intergenic 20.0%
!! AACAACTAAAACTGATATTT+GGG + chr8_4:16202340-16202359 None:intergenic 20.0%
!! TAACAACTAAAACTGATATT+TGG + chr8_4:16202341-16202360 None:intergenic 20.0%
!! AATATGTAACAAAGCAAAAA+TGG + chr8_4:16202754-16202773 None:intergenic 20.0%
!!! TGATGCATTGTTATTTTTTA+TGG - chr8_4:16203113-16203132 Msa1316200:intron 20.0%
!!! CATTGTTATTTTTTATGGAA+AGG - chr8_4:16203118-16203137 Msa1316200:intron 20.0%
!! CTTCAAATCAAATAGAATAA+AGG + chr8_4:16203195-16203214 None:intergenic 20.0%
!!! ATTACTGATTTTAATTTTGC+AGG - chr8_4:16203540-16203559 Msa1316200:intron 20.0%
!!! TAATAAACCTTTACCATTTT+TGG + chr8_4:16203916-16203935 None:intergenic 20.0%
!! TTATGCTTATATATACGAAA+TGG - chr8_4:16203933-16203952 Msa1316200:intron 20.0%
!!! TTTAGGTTTATACACAAATT+TGG - chr8_4:16204024-16204043 Msa1316200:five_prime_UTR 20.0%
!!! ATTTTGATCTACTTACTATT+AGG - chr8_4:16204405-16204424 Msa1316200:five_prime_UTR 20.0%
!!! GTTAATTTTTTTATCTTCTC+TGG - chr8_4:16205998-16206017 Msa1316200:intron 20.0%
!! AGCATAATGAAATGATATAA+AGG - chr8_4:16206343-16206362 Msa1316200:intron 20.0%
!!! ATATGAAATTTTCAAATAGC+TGG - chr8_4:16206577-16206596 Msa1316200:five_prime_UTR 20.0%
!!! ATCATATATACTTTTCACAA+AGG + chr8_4:16206623-16206642 None:intergenic 20.0%
!!! ACATTTTCAGCTTTTAAAAA+TGG - chr8_4:16206895-16206914 Msa1316200:intron 20.0%
!! TAAAATTGTTCATAACTCAT+TGG - chr8_4:16207125-16207144 Msa1316200:intron 20.0%
! CTGAAGAGAAAAATGAAAAT+TGG - chr8_4:16200304-16200323 Msa1316200:intron 25.0%
! GAAAAATGAAAATTGGAAGA+TGG - chr8_4:16200311-16200330 Msa1316200:intron 25.0%
! GTTTGATTAAACAAAAGATG+AGG + chr8_4:16200422-16200441 None:intergenic 25.0%
! GTTTAATCAAACATCATGAT+CGG - chr8_4:16200430-16200449 Msa1316200:intron 25.0%
! AATCTGGAAAAACAAAAACT+TGG + chr8_4:16200510-16200529 None:intergenic 25.0%
!!! TTTTCCAGATTTTTTTGGAT+CGG - chr8_4:16200519-16200538 Msa1316200:intron 25.0%
! ATTGTCATGACATAAATTTG+GGG + chr8_4:16200626-16200645 None:intergenic 25.0%
! GATTGTCATGACATAAATTT+GGG + chr8_4:16200627-16200646 None:intergenic 25.0%
! TGATTGTCATGACATAAATT+TGG + chr8_4:16200628-16200647 None:intergenic 25.0%
! AACGAAAAAACACAGTAAAA+AGG + chr8_4:16200679-16200698 None:intergenic 25.0%
!!! TGAAATTTGTTGATTGTTGT+AGG - chr8_4:16200864-16200883 Msa1316200:CDS 25.0%
!!! AAGCTGTTTTTGTGTTTTAA+AGG - chr8_4:16201439-16201458 Msa1316200:five_prime_UTR 25.0%
! TCAGAGTCAAATTCAATAAT+TGG + chr8_4:16201643-16201662 None:intergenic 25.0%
!! TCTTTTGTTAACTTCCTATA+TGG - chr8_4:16201664-16201683 Msa1316200:five_prime_UTR 25.0%
!!! GAAATTATGGTTCTACATTT+TGG - chr8_4:16201769-16201788 Msa1316200:five_prime_UTR 25.0%
!!! GTATGATTCTATTTTGATTC+TGG - chr8_4:16201848-16201867 Msa1316200:five_prime_UTR 25.0%
!!! GGTGCAAAATTTTGATATTT+TGG + chr8_4:16201933-16201952 None:intergenic 25.0%
! AAACTTATCCTGTAATGTTT+AGG + chr8_4:16201954-16201973 None:intergenic 25.0%
! AGGATTGAAACTAAATGTTT+GGG + chr8_4:16202094-16202113 None:intergenic 25.0%
! AAGGATTGAAACTAAATGTT+TGG + chr8_4:16202095-16202114 None:intergenic 25.0%
! GAAATTTACCAAGAATTGAT+GGG + chr8_4:16202253-16202272 None:intergenic 25.0%
! AGAAATTTACCAAGAATTGA+TGG + chr8_4:16202254-16202273 None:intergenic 25.0%
!!! TTTTTAGGTTCAGTAGTTAA+AGG - chr8_4:16203231-16203250 Msa1316200:intron 25.0%
!!! TTTTAGGTTCAGTAGTTAAA+GGG - chr8_4:16203232-16203251 Msa1316200:intron 25.0%
! TGCTATCAACATATGATATA+AGG + chr8_4:16203364-16203383 None:intergenic 25.0%
!!! ATATCATATGTTGATAGCAA+AGG - chr8_4:16203365-16203384 Msa1316200:intron 25.0%
!! TAGCAAAGGTTATATGATTT+TGG - chr8_4:16203379-16203398 Msa1316200:intron 25.0%
! TGATAATAATATGGGAAACA+TGG + chr8_4:16203478-16203497 None:intergenic 25.0%
! TGTTTAGAAAATAGTGAAGT+AGG + chr8_4:16204817-16204836 None:intergenic 25.0%
!! AAATCATTACATTTTTCTGG+TGG - chr8_4:16204989-16205008 Msa1316200:intron 25.0%
! CTATAATTCATGTCTTACTA+TGG + chr8_4:16205092-16205111 None:intergenic 25.0%
!!! GTTGTTTTCATTTGGTATAT+TGG - chr8_4:16205297-16205316 Msa1316200:intron 25.0%
! GATGGTATAAAAAACTTGTA+AGG + chr8_4:16205564-16205583 None:intergenic 25.0%
! AACCTAAACTTACAAAAACA+TGG + chr8_4:16205861-16205880 None:intergenic 25.0%
! GAATTGTATGTTACATACTA+TGG + chr8_4:16206150-16206169 None:intergenic 25.0%
!! CATTAATTTGAATGAGTCAT+TGG - chr8_4:16206233-16206252 Msa1316200:intron 25.0%
! CATGACATGATTTGATTATT+TGG - chr8_4:16206266-16206285 Msa1316200:intron 25.0%
!! TTCTTGGTGTAGTAATTAAT+TGG - chr8_4:16206465-16206484 Msa1316200:intron 25.0%
! AATTAATTGGATACTCTTAG+AGG - chr8_4:16206478-16206497 Msa1316200:five_prime_UTR 25.0%
!! ATTTTCCATTGACATTATCT+TGG - chr8_4:16206546-16206565 Msa1316200:five_prime_UTR 25.0%
!!! ATTTTTTTCTTCCTTAGGTA+AGG + chr8_4:16206667-16206686 None:intergenic 25.0%
! TACCTAAGGAAGAAAAAAAT+TGG - chr8_4:16206667-16206686 Msa1316200:five_prime_UTR 25.0%
!!! CATTTGTTTTTCATATCCTT+TGG - chr8_4:16206967-16206986 Msa1316200:intron 25.0%
!! TTTTTCATATCCTTTGGATT+AGG - chr8_4:16206973-16206992 Msa1316200:intron 25.0%
!! GAACAATTTTATATACCTGT+AGG + chr8_4:16207116-16207135 None:intergenic 25.0%
! GTATTCTCTATTATTACAGT+TGG - chr8_4:16207239-16207258 Msa1316200:intron 25.0%
! AATACTTGACAACAACAATT+TGG + chr8_4:16207334-16207353 None:intergenic 25.0%
AATGAAATGAATGAAGACCA+AGG - chr8_4:16200390-16200409 Msa1316200:CDS 30.0%
AAAAGATGAGGAAATTACCT+TGG + chr8_4:16200410-16200429 None:intergenic 30.0%
! GACAGTCATCAATTTTGAAT+AGG - chr8_4:16200775-16200794 Msa1316200:intron 30.0%
! AGTCATCAATTTTGAATAGG+AGG - chr8_4:16200778-16200797 Msa1316200:CDS 30.0%
TCTAAAAATGGCTTCTACAT+TGG - chr8_4:16201050-16201069 Msa1316200:five_prime_UTR 30.0%
! TATGATGTTTTGCTTGATGA+TGG - chr8_4:16201262-16201281 Msa1316200:five_prime_UTR 30.0%
TATACTGCTCCTATAAAACA+CGG + chr8_4:16201307-16201326 None:intergenic 30.0%
TCTTAAACCATAACGTTTGA+AGG + chr8_4:16201344-16201363 None:intergenic 30.0%
TCAAACGTTATGGTTTAAGA+AGG - chr8_4:16201344-16201363 Msa1316200:five_prime_UTR 30.0%
TGGTTTAAGAAGGATTTCAT+TGG - chr8_4:16201354-16201373 Msa1316200:five_prime_UTR 30.0%
! TTTTGCAAAGAATCATCACA+CGG + chr8_4:16201509-16201528 None:intergenic 30.0%
!!! GTTGAGACATTGCTTTTTTA+TGG - chr8_4:16201799-16201818 Msa1316200:five_prime_UTR 30.0%
!!! AGACATTGCTTTTTTATGGA+TGG - chr8_4:16201803-16201822 Msa1316200:five_prime_UTR 30.0%
! ATTTTGCACCTAAACATTAC+AGG - chr8_4:16201943-16201962 Msa1316200:five_prime_UTR 30.0%
ATTGAAACTAAATGTTTGGG+AGG + chr8_4:16202091-16202110 None:intergenic 30.0%
! TTTTCTTTTCTTTTCACACC+AGG - chr8_4:16202161-16202180 Msa1316200:five_prime_UTR 30.0%
! TTTCTTTTCTTTTCACACCA+GGG - chr8_4:16202162-16202181 Msa1316200:five_prime_UTR 30.0%
AGAAATCTGCAAAAGAAACA+TGG + chr8_4:16202284-16202303 None:intergenic 30.0%
! GTTGTTAAGCTACTTGATTT+TGG - chr8_4:16202354-16202373 Msa1316200:five_prime_UTR 30.0%
!! TTAAGCTACTTGATTTTGGT+GGG - chr8_4:16202358-16202377 Msa1316200:five_prime_UTR 30.0%
TAAAATGCATTGCAAGTGTT+TGG - chr8_4:16202417-16202436 Msa1316200:five_prime_UTR 30.0%
! AAACACCAGATTTTTCTCAT+GGG + chr8_4:16202450-16202469 None:intergenic 30.0%
! TAAACACCAGATTTTTCTCA+TGG + chr8_4:16202451-16202470 None:intergenic 30.0%
!!! AGCATCACATGTTTTTAGTA+AGG - chr8_4:16202470-16202489 Msa1316200:five_prime_UTR 30.0%
ATCAAAATTGTATCCTGATG+TGG + chr8_4:16202582-16202601 None:intergenic 30.0%
TCTCAAAATTCCTGTAGAAA+AGG - chr8_4:16202678-16202697 Msa1316200:five_prime_UTR 30.0%
!! TGCATTGGATAATTTGCTTT+AGG - chr8_4:16202711-16202730 Msa1316200:five_prime_UTR 30.0%
TGGGTTAACATATTTCTTTG+TGG - chr8_4:16202835-16202854 Msa1316200:five_prime_UTR 30.0%
! ATGATGGTCTTTTATGTAAG+TGG - chr8_4:16202966-16202985 Msa1316200:five_prime_UTR 30.0%
TTGAATTATGGGACTGATAT+TGG - chr8_4:16203300-16203319 Msa1316200:intron 30.0%
! CAAAGGTTATATGATTTTGG+AGG - chr8_4:16203382-16203401 Msa1316200:intron 30.0%
!!! GATTTTAATTTTGCAGGTGT+TGG - chr8_4:16203546-16203565 Msa1316200:intron 30.0%
AAATTCTTTGTCAGAAACCT+TGG + chr8_4:16203599-16203618 None:intergenic 30.0%
AAAAGCTGAGGTAATGTTTA+TGG - chr8_4:16203699-16203718 Msa1316200:intron 30.0%
!! GATTTTGTTTGGCACATATA+TGG + chr8_4:16203798-16203817 None:intergenic 30.0%
ATATGTGCCAAACAAAATCA+TGG - chr8_4:16203799-16203818 Msa1316200:intron 30.0%
! GTAGATACCATGATTTTGTT+TGG + chr8_4:16203809-16203828 None:intergenic 30.0%
AATTGCAAATGTTTGATGCT+TGG + chr8_4:16203882-16203901 None:intergenic 30.0%
ATCAAACATTTGCAATTCGA+CGG - chr8_4:16203885-16203904 Msa1316200:intron 30.0%
!! TTTGTTTCTATAATATCCCC+AGG + chr8_4:16203990-16204009 None:intergenic 30.0%
!! TACTCCTTTTTCGTTCAAAT+TGG - chr8_4:16204081-16204100 Msa1316200:intron 30.0%
ACTACCAATTTGAACGAAAA+AGG + chr8_4:16204088-16204107 None:intergenic 30.0%
GATATGATTCATTACTCTCT+CGG - chr8_4:16204281-16204300 Msa1316200:five_prime_UTR 30.0%
AAAGAAACTGCTAAAAGTCT+TGG - chr8_4:16204372-16204391 Msa1316200:five_prime_UTR 30.0%
AACACAAAACAGTTAGTGTT+GGG + chr8_4:16204436-16204455 None:intergenic 30.0%
TAACACAAAACAGTTAGTGT+TGG + chr8_4:16204437-16204456 None:intergenic 30.0%
! AGAAAGAGTATGTTAGTAGA+AGG + chr8_4:16204624-16204643 None:intergenic 30.0%
TCTGTTACTATTATGTCAAG+AGG - chr8_4:16204756-16204775 Msa1316200:five_prime_UTR 30.0%
! CCTTAATGTGTCATTAAATG+TGG + chr8_4:16204895-16204914 None:intergenic 30.0%
CCACATTTAATGACACATTA+AGG - chr8_4:16204892-16204911 Msa1316200:intron 30.0%
TCTAACAGTATACAATGCAT+TGG + chr8_4:16205119-16205138 None:intergenic 30.0%
!!! CAGAAGTTGTTGTTTTCATT+TGG - chr8_4:16205289-16205308 Msa1316200:intron 30.0%
TGTATTAGTTGTTCTGATTC+AGG - chr8_4:16205377-16205396 Msa1316200:intron 30.0%
!! TTGGTTTGTGATTTGAAACA+CGG + chr8_4:16205451-16205470 None:intergenic 30.0%
GGTATAAAAAACTTGTAAGG+CGG + chr8_4:16205561-16205580 None:intergenic 30.0%
CACAAGATGAAATATCAAAC+AGG + chr8_4:16205603-16205622 None:intergenic 30.0%
CTTTATCACAAGATGTATTC+TGG - chr8_4:16205741-16205760 Msa1316200:intron 30.0%
ACTAACTCTTCCTATGTTAT+AGG - chr8_4:16205919-16205938 Msa1316200:intron 30.0%
AGACAAATTCAAATGAGAAC+CGG + chr8_4:16205965-16205984 None:intergenic 30.0%
GCTATCTTGAATCTGTTATA+AGG - chr8_4:16206060-16206079 Msa1316200:five_prime_UTR 30.0%
TTGCAGTAAAAGTCTATCAA+TGG + chr8_4:16206172-16206191 None:intergenic 30.0%
GCATTGAACTCACATTTATA+TGG - chr8_4:16206365-16206384 Msa1316200:intron 30.0%
CACATCGATAATATCATTCT+TGG - chr8_4:16206449-16206468 Msa1316200:intron 30.0%
TCTGTGAACATTAAGAATTC+AGG - chr8_4:16206514-16206533 Msa1316200:five_prime_UTR 30.0%
TTCAAAATGAACCTTACCTA+AGG - chr8_4:16206653-16206672 Msa1316200:five_prime_UTR 30.0%
!! ATATTGAGTACTGAAGATCA+TGG - chr8_4:16206703-16206722 Msa1316200:five_prime_UTR 30.0%
!! AAACTGAGAAGAGGTTTTAT+TGG + chr8_4:16206749-16206768 None:intergenic 30.0%
AATATGGAAAAACTGAGAAG+AGG + chr8_4:16206758-16206777 None:intergenic 30.0%
TTAGAGGAATTATTAGGAAC+AGG + chr8_4:16206784-16206803 None:intergenic 30.0%
CTCTTCTTAGAGGAATTATT+AGG + chr8_4:16206790-16206809 None:intergenic 30.0%
ATTTCTACTACTCTTCTTAG+AGG + chr8_4:16206800-16206819 None:intergenic 30.0%
TCTAAGAAGAGTAGTAGAAA+TGG - chr8_4:16206799-16206818 Msa1316200:intron 30.0%
AGAAATGGACATTCACAAAA+TGG - chr8_4:16206814-16206833 Msa1316200:intron 30.0%
GAAATGGACATTCACAAAAT+GGG - chr8_4:16206815-16206834 Msa1316200:intron 30.0%
AAATGGACATTCACAAAATG+GGG - chr8_4:16206816-16206835 Msa1316200:intron 30.0%
! TTGATCTTTCGACATTTTTC+AGG + chr8_4:16206864-16206883 None:intergenic 30.0%
TTCTCTATTATTACAGTTGG+AGG - chr8_4:16207242-16207261 Msa1316200:intron 30.0%
TCTCTATTATTACAGTTGGA+GGG - chr8_4:16207243-16207262 Msa1316200:intron 30.0%
! GTTGTCAAGTATTCTCTTTT+AGG - chr8_4:16207341-16207360 Msa1316200:five_prime_UTR 30.0%
TTCTGATTCTAAATCCAGAG+CGG + chr8_4:16200586-16200605 None:intergenic 35.0%
! ATTCATCATGCTTTGTTGAG+TGG - chr8_4:16200982-16201001 Msa1316200:CDS 35.0%
TCTACATTGGAAATGTGATG+TGG - chr8_4:16201063-16201082 Msa1316200:five_prime_UTR 35.0%
!!! TCGAGGTTTGTTTTATGTGA+AGG - chr8_4:16201235-16201254 Msa1316200:five_prime_UTR 35.0%
! TTTTCGACCTTCAAACGTTA+TGG - chr8_4:16201334-16201353 Msa1316200:five_prime_UTR 35.0%
CAAAACAGAGAGACATTTCA+TGG - chr8_4:16201524-16201543 Msa1316200:five_prime_UTR 35.0%
GTCAGAGTTGCTTGAAATTA+TGG - chr8_4:16201756-16201775 Msa1316200:five_prime_UTR 35.0%
AATCCTTTGCGTAGTTAGAA+TGG - chr8_4:16202108-16202127 Msa1316200:five_prime_UTR 35.0%
ATCCTTTGCGTAGTTAGAAT+GGG - chr8_4:16202109-16202128 Msa1316200:five_prime_UTR 35.0%
AATGCAAGAATGTATTTCCC+TGG + chr8_4:16202182-16202201 None:intergenic 35.0%
ATACATTCTTGCATTCTTGC+TGG - chr8_4:16202187-16202206 Msa1316200:five_prime_UTR 35.0%
! GTTAAGCTACTTGATTTTGG+TGG - chr8_4:16202357-16202376 Msa1316200:five_prime_UTR 35.0%
!! TTTTGGTGGGTGGATATTTT+AGG - chr8_4:16202371-16202390 Msa1316200:five_prime_UTR 35.0%
AAATGCCCATGAGAAAAATC+TGG - chr8_4:16202442-16202461 Msa1316200:five_prime_UTR 35.0%
TTTAAATGACAAGCCACATC+AGG - chr8_4:16202566-16202585 Msa1316200:five_prime_UTR 35.0%
GAGAAAGAACAACATGTATG+AGG + chr8_4:16202662-16202681 None:intergenic 35.0%
GCAAATTATCCAATGCATCA+TGG + chr8_4:16202708-16202727 None:intergenic 35.0%
!! GGATAATTTGCTTTAGGTGT+CGG - chr8_4:16202717-16202736 Msa1316200:five_prime_UTR 35.0%
AGAACTGCACACATATAACA+AGG - chr8_4:16202781-16202800 Msa1316200:five_prime_UTR 35.0%
GAACTGCACACATATAACAA+GGG - chr8_4:16202782-16202801 Msa1316200:five_prime_UTR 35.0%
! CATATAACAAGGGCCTATTT+TGG - chr8_4:16202792-16202811 Msa1316200:five_prime_UTR 35.0%
TTGTGGCAAAAGTTTCATTG+TGG - chr8_4:16202852-16202871 Msa1316200:five_prime_UTR 35.0%
GTCATGAAATTTGATGCATG+TGG - chr8_4:16202988-16203007 Msa1316200:five_prime_UTR 35.0%
ACTTCCTGCAAGTAATAGAA+AGG + chr8_4:16203050-16203069 None:intergenic 35.0%
AATGCTCAAGGGTCAAATAT+GGG + chr8_4:16203160-16203179 None:intergenic 35.0%
TAATGCTCAAGGGTCAAATA+TGG + chr8_4:16203161-16203180 None:intergenic 35.0%
ATATTTGACCCTTGAGCATT+AGG - chr8_4:16203160-16203179 Msa1316200:intron 35.0%
AAGAGAAACCTAATGCTCAA+GGG + chr8_4:16203171-16203190 None:intergenic 35.0%
AAAGAGAAACCTAATGCTCA+AGG + chr8_4:16203172-16203191 None:intergenic 35.0%
TTTCAAGCTGTTGTTGTAGT+CGG - chr8_4:16203419-16203438 Msa1316200:five_prime_UTR 35.0%
TGACTACAAAGTTGCTTATG+AGG - chr8_4:16203623-16203642 Msa1316200:intron 35.0%
!! TACTTTTAGCTATACTCCTG+TGG - chr8_4:16203826-16203845 Msa1316200:intron 35.0%
!! ACTTTTAGCTATACTCCTGT+GGG - chr8_4:16203827-16203846 Msa1316200:intron 35.0%
GGATTTGCCAAAAATGGTAA+AGG - chr8_4:16203906-16203925 Msa1316200:intron 35.0%
TTACCAGAGATATACTTCCT+GGG - chr8_4:16203970-16203989 Msa1316200:five_prime_UTR 35.0%
AAGACAATAATGAAACGGGA+AGG + chr8_4:16204123-16204142 None:intergenic 35.0%
CTGCAAGACAATAATGAAAC+GGG + chr8_4:16204127-16204146 None:intergenic 35.0%
CCTGCAAGACAATAATGAAA+CGG + chr8_4:16204128-16204147 None:intergenic 35.0%
! TTGCAGGTTTTCTATTACAC+TGG - chr8_4:16204141-16204160 Msa1316200:intron 35.0%
ACACAAAACAGTTAGTGTTG+GGG + chr8_4:16204435-16204454 None:intergenic 35.0%
!!! TTGTTTTTGCATCGACACTT+TGG - chr8_4:16204562-16204581 Msa1316200:five_prime_UTR 35.0%
AATCTGCTAAGATGAATGTC+TGG + chr8_4:16204736-16204755 None:intergenic 35.0%
TTATGAGTCATCCAGATGAT+GGG - chr8_4:16205060-16205079 Msa1316200:intron 35.0%
!! TTTTCTGAAAGCCATTGTTG+TGG - chr8_4:16205217-16205236 Msa1316200:intron 35.0%
CTTCTGTTAAACAGAAACAG+AGG + chr8_4:16205275-16205294 None:intergenic 35.0%
GTGTTTCAAATCACAAACCA+AGG - chr8_4:16205450-16205469 Msa1316200:five_prime_UTR 35.0%
!! GTTTTTCTAGAAGAGACTGT+TGG + chr8_4:16205533-16205552 None:intergenic 35.0%
! AAAAACTTGTAAGGCGGTTT+TGG + chr8_4:16205555-16205574 None:intergenic 35.0%
!!! GTTTTTTATACCATCAGCTG+AGG - chr8_4:16205569-16205588 Msa1316200:intron 35.0%
!! CGCCATGTTTTTGTAAGTTT+AGG - chr8_4:16205856-16205875 Msa1316200:five_prime_UTR 35.0%
AATTGCCATGTTATGAAGTC+TGG - chr8_4:16205893-16205912 Msa1316200:five_prime_UTR 35.0%
GTAAACCAGACTTCATAACA+TGG + chr8_4:16205901-16205920 None:intergenic 35.0%
TTCCTATGTTATAGGCTCAA+AGG - chr8_4:16205927-16205946 Msa1316200:intron 35.0%
TCCTATGTTATAGGCTCAAA+GGG - chr8_4:16205928-16205947 Msa1316200:intron 35.0%
TTCTCTGGTGTTTGTAAGAT+GGG - chr8_4:16206013-16206032 Msa1316200:intron 35.0%
TTATAAGGTGCATGACTCAT+TGG - chr8_4:16206075-16206094 Msa1316200:five_prime_UTR 35.0%
GAACTCACATTTATATGGCT+AGG - chr8_4:16206370-16206389 Msa1316200:intron 35.0%
AGGTACCAAGATAATGTCAA+TGG + chr8_4:16206554-16206573 None:intergenic 35.0%
!!! CGCCAATTTTTTTCTTCCTT+AGG + chr8_4:16206672-16206691 None:intergenic 35.0%
TATTAGGAACAGGCAGAATA+TGG + chr8_4:16206774-16206793 None:intergenic 35.0%
! ATATCCGTATCAGTTTTCTC+AGG - chr8_4:16206930-16206949 Msa1316200:intron 35.0%
! CTTTGGATTAGGTGAAGATT+CGG - chr8_4:16206984-16207003 Msa1316200:intron 35.0%
AAGAAGAAGGTTTGAAAGGA+TGG + chr8_4:16207369-16207388 None:intergenic 35.0%
CTGGAAGCAGAAAAGGAAAA+CGG - chr8_4:16200281-16200300 Msa1316200:intron 40.0%
TGGTGAAAACGAAAGAGAGA+CGG - chr8_4:16200331-16200350 Msa1316200:CDS 40.0%
!! AGAAGAGGAAAGTGTTGTGT+TGG - chr8_4:16200358-16200377 Msa1316200:CDS 40.0%
TGCTCCGATCCAAAAAAATC+TGG + chr8_4:16200526-16200545 None:intergenic 40.0%
! GCTCTGGATTTAGAATCAGA+AGG - chr8_4:16200585-16200604 Msa1316200:CDS 40.0%
!! CCATTTTTAGACCAGTTGGA+GGG + chr8_4:16201041-16201060 None:intergenic 40.0%
!!! GAAGCCATTTTTAGACCAGT+TGG + chr8_4:16201045-16201064 None:intergenic 40.0%
ATTGGAAATGTGATGTGGAG+TGG - chr8_4:16201068-16201087 Msa1316200:five_prime_UTR 40.0%
GCTAGCAGACAATTGAAATG+AGG - chr8_4:16201174-16201193 Msa1316200:five_prime_UTR 40.0%
AGAATCATCACACGGAAGTT+AGG + chr8_4:16201501-16201520 None:intergenic 40.0%
GCTATAGATTCAGCCAAAGT+GGG + chr8_4:16201576-16201595 None:intergenic 40.0%
AGCTATAGATTCAGCCAAAG+TGG + chr8_4:16201577-16201596 None:intergenic 40.0%
! TGGCTGAATCTATAGCTTTG+AGG - chr8_4:16201580-16201599 Msa1316200:five_prime_UTR 40.0%
!! CTGAATCTATAGCTTTGAGG+TGG - chr8_4:16201583-16201602 Msa1316200:five_prime_UTR 40.0%
!! ATTGCCTTTAGGTACTGACT+TGG - chr8_4:16201614-16201633 Msa1316200:five_prime_UTR 40.0%
AGAATCATACCTGTCTCAAG+TGG + chr8_4:16201838-16201857 None:intergenic 40.0%
AACCCATTCTAACTACGCAA+AGG + chr8_4:16202114-16202133 None:intergenic 40.0%
!! GTTAGAATGGGTTGTTGAAC+TGG - chr8_4:16202121-16202140 Msa1316200:five_prime_UTR 40.0%
!! ACCAAGAATTGATGGGTTTG+AGG + chr8_4:16202246-16202265 None:intergenic 40.0%
TCTACTTCTTTACACCTGAC+TGG - chr8_4:16202532-16202551 Msa1316200:five_prime_UTR 40.0%
TTCTTTACACCTGACTGGAT+AGG - chr8_4:16202537-16202556 Msa1316200:five_prime_UTR 40.0%
AAACCAAATCCTATCCAGTC+AGG + chr8_4:16202549-16202568 None:intergenic 40.0%
AACATGTATGAGGTTCATGC+AGG + chr8_4:16202652-16202671 None:intergenic 40.0%
! TCATGGAACTCCTTTTCTAC+AGG + chr8_4:16202691-16202710 None:intergenic 40.0%
AAAGGAGTTCCATGATGCAT+TGG - chr8_4:16202696-16202715 Msa1316200:five_prime_UTR 40.0%
!! ATAACAAGGGCCTATTTTGG+AGG - chr8_4:16202795-16202814 Msa1316200:five_prime_UTR 40.0%
GATGAAGAAGACTGAGATGA+TGG - chr8_4:16202950-16202969 Msa1316200:five_prime_UTR 40.0%
CTTGCCTTTCTATTACTTGC+AGG - chr8_4:16203043-16203062 Msa1316200:intron 40.0%
TATGAGGAAATTGCTGAAGC+TGG - chr8_4:16203639-16203658 Msa1316200:intron 40.0%
!! CTTTTAGCTATACTCCTGTG+GGG - chr8_4:16203828-16203847 Msa1316200:intron 40.0%
TGCAAATGTTTGATGCTTGG+AGG + chr8_4:16203879-16203898 None:intergenic 40.0%
! TTCGACGGATTTGCCAAAAA+TGG - chr8_4:16203900-16203919 Msa1316200:intron 40.0%
CTTACCAGAGATATACTTCC+TGG - chr8_4:16203969-16203988 Msa1316200:five_prime_UTR 40.0%
TACCAGAGATATACTTCCTG+GGG - chr8_4:16203971-16203990 Msa1316200:five_prime_UTR 40.0%
TGAACGAAAAAGGAGTAGCA+CGG + chr8_4:16204078-16204097 None:intergenic 40.0%
CCGTTTCATTATTGTCTTGC+AGG - chr8_4:16204125-16204144 Msa1316200:intron 40.0%
!!! CTTTGGTTTTGTAGCTTGCT+TGG - chr8_4:16204579-16204598 Msa1316200:intron 40.0%
AACATACTCTTTCTTGCACC+AGG - chr8_4:16204630-16204649 Msa1316200:intron 40.0%
AGATACCCATGGACATTTGT+TGG - chr8_4:16204657-16204676 Msa1316200:intron 40.0%
! TCTGAGATAAGAACCATCGA+CGG + chr8_4:16204707-16204726 None:intergenic 40.0%
GTACAACCCTGCATTTAATC+AGG - chr8_4:16204791-16204810 Msa1316200:five_prime_UTR 40.0%
AGTAGGCCTGATTAAATGCA+GGG + chr8_4:16204800-16204819 None:intergenic 40.0%
AAGTAGGCCTGATTAAATGC+AGG + chr8_4:16204801-16204820 None:intergenic 40.0%
TTATGACTCTAATTCGACCG+CGG - chr8_4:16204916-16204935 Msa1316200:intron 40.0%
CTTATGAGTCATCCAGATGA+TGG - chr8_4:16205059-16205078 Msa1316200:intron 40.0%
AGGAACACAGAATTTGTGCT+TGG + chr8_4:16205146-16205165 None:intergenic 40.0%
AAACTGTAACAGCTACGACA+AGG + chr8_4:16205185-16205204 None:intergenic 40.0%
CTAAAAACCCACTGTAGAAG+AGG + chr8_4:16205328-16205347 None:intergenic 40.0%
!!! TCTACAGTGGGTTTTTAGCA+AGG - chr8_4:16205330-16205349 Msa1316200:intron 40.0%
!!! CTACAGTGGGTTTTTAGCAA+GGG - chr8_4:16205331-16205350 Msa1316200:intron 40.0%
!!! TACAGTGGGTTTTTAGCAAG+GGG - chr8_4:16205332-16205351 Msa1316200:intron 40.0%
AAAAGTCGTCAGTTTCACCT+TGG + chr8_4:16205470-16205489 None:intergenic 40.0%
TCCCTTTGAGCCTATAACAT+AGG + chr8_4:16205932-16205951 None:intergenic 40.0%
TCAAAGGGATGAGATGATAC+CGG - chr8_4:16205943-16205962 Msa1316200:intron 40.0%
CTTCTCTGGTGTTTGTAAGA+TGG - chr8_4:16206012-16206031 Msa1316200:intron 40.0%
!! AAAGTGCTGCGCTATTAAAG+AGG - chr8_4:16206297-16206316 Msa1316200:intron 40.0%
TGAGAAAAAACTGCACCTCA+GGG + chr8_4:16206398-16206417 None:intergenic 40.0%
ATGAGAAAAAACTGCACCTC+AGG + chr8_4:16206399-16206418 None:intergenic 40.0%
!!! TGAGGTGCAGTTTTTTCTCA+TGG - chr8_4:16206398-16206417 Msa1316200:intron 40.0%
GAATTATGTCATGCCAAGCT+TGG + chr8_4:16206430-16206449 None:intergenic 40.0%
AGTGCCTGAGAAAACTGATA+CGG + chr8_4:16206937-16206956 None:intergenic 40.0%
CGAATCTTCACCTAATCCAA+AGG + chr8_4:16206986-16207005 None:intergenic 40.0%
!!! GCACTGATTTTGTACACTAG+CGG - chr8_4:16207006-16207025 Msa1316200:intron 40.0%
!!! CACTGATTTTGTACACTAGC+GGG - chr8_4:16207007-16207026 Msa1316200:intron 40.0%
AGACAAATTGCCTTCTTCAC+TGG - chr8_4:16207089-16207108 Msa1316200:five_prime_UTR 40.0%
GGCTTCTTAATGCAACATGT+GGG - chr8_4:16207264-16207283 Msa1316200:five_prime_UTR 40.0%
GCACAAGAAGAAGGTTTGAA+AGG + chr8_4:16207373-16207392 None:intergenic 40.0%
TCAAACCTTCTTCTTGTGCT+TGG - chr8_4:16207374-16207393 Msa1316200:five_prime_UTR 40.0%
AAGTTCCAAGCACAAGAAGA+AGG + chr8_4:16207382-16207401 None:intergenic 40.0%
!! CATATTTTTGCTCCACTCCA+AGG + chr8_4:16207430-16207449 None:intergenic 40.0%
!!! CTCCTTTCCTCGTTTTTTGC+CGG + chr8_4:16200256-16200275 None:intergenic 45.0%
AGAAACGCTGGAAGCAGAAA+AGG - chr8_4:16200274-16200293 Msa1316200:CDS 45.0%
TTGGATCGGAGCAACTTCAA+CGG - chr8_4:16200533-16200552 Msa1316200:intron 45.0%
! TGAGTGGATTCCCAACAATG+TGG - chr8_4:16200998-16201017 Msa1316200:exon 45.0%
AGACAGAGGACCACATTGTT+GGG + chr8_4:16201011-16201030 None:intergenic 45.0%
! CCCTCCAACTGGTCTAAAAA+TGG - chr8_4:16201038-16201057 Msa1316200:five_prime_UTR 45.0%
!!! GCCATTTTTAGACCAGTTGG+AGG + chr8_4:16201042-16201061 None:intergenic 45.0%
CAATAGCGCAAATACAGTGC+AGG + chr8_4:16201131-16201150 None:intergenic 45.0%
!! TGTCTGCTAGCACTGATGAA+GGG + chr8_4:16201165-16201184 None:intergenic 45.0%
!! TTGTCTGCTAGCACTGATGA+AGG + chr8_4:16201166-16201185 None:intergenic 45.0%
TGGCGACTTCAATTGCCTTT+AGG - chr8_4:16201603-16201622 Msa1316200:five_prime_UTR 45.0%
GAGTCCAAGTCAGTACCTAA+AGG + chr8_4:16201621-16201640 None:intergenic 45.0%
! ATGATCTTGCCACTTGAGAC+AGG - chr8_4:16201826-16201845 Msa1316200:five_prime_UTR 45.0%
GCCTCAAACCCATCAATTCT+TGG - chr8_4:16202242-16202261 Msa1316200:five_prime_UTR 45.0%
!! AGCTACTTGATTTTGGTGGG+TGG - chr8_4:16202361-16202380 Msa1316200:five_prime_UTR 45.0%
!! TGGTGGGTGGATATTTTAGG+AGG - chr8_4:16202374-16202393 Msa1316200:five_prime_UTR 45.0%
!! GGTGGGTGGATATTTTAGGA+GGG - chr8_4:16202375-16202394 Msa1316200:five_prime_UTR 45.0%
AGGAGGGCTGGAATTAGTAA+TGG - chr8_4:16202391-16202410 Msa1316200:five_prime_UTR 45.0%
GGAGGGCTGGAATTAGTAAT+GGG - chr8_4:16202392-16202411 Msa1316200:five_prime_UTR 45.0%
GAGGGCTGGAATTAGTAATG+GGG - chr8_4:16202393-16202412 Msa1316200:five_prime_UTR 45.0%
ACACCTGACTGGATAGGATT+TGG - chr8_4:16202543-16202562 Msa1316200:five_prime_UTR 45.0%
GCACCTTCATCCTCCAAAAT+AGG + chr8_4:16202808-16202827 None:intergenic 45.0%
GGGACTGATATTGGAACTGA+CGG - chr8_4:16203309-16203328 Msa1316200:intron 45.0%
GGACTGATATTGGAACTGAC+GGG - chr8_4:16203310-16203329 Msa1316200:intron 45.0%
GACTGATATTGGAACTGACG+GGG - chr8_4:16203311-16203330 Msa1316200:intron 45.0%
TGTTGTTGTAGTCGGATCAG+AGG - chr8_4:16203427-16203446 Msa1316200:five_prime_UTR 45.0%
!!! AATTTTGCAGGTGTTGGCCT+TGG - chr8_4:16203552-16203571 Msa1316200:intron 45.0%
AGGAAATTGCTGAAGCTGGA+TGG - chr8_4:16203643-16203662 Msa1316200:intron 45.0%
GCTGAAGCTGGATGGTATTA+AGG - chr8_4:16203651-16203670 Msa1316200:intron 45.0%
CTGGATGGTATTAAGGCTGA+AGG - chr8_4:16203658-16203677 Msa1316200:intron 45.0%
TTAAGGCTGAAGGTGAAGCT+AGG - chr8_4:16203668-16203687 Msa1316200:intron 45.0%
TAGGTTGCAGAGAAAAGCTG+AGG - chr8_4:16203687-16203706 Msa1316200:intron 45.0%
! ATCCCCAGGAAGTATATCTC+TGG + chr8_4:16203976-16203995 None:intergenic 45.0%
! TGCATTTCAAGTCTGTCTGC+AGG - chr8_4:16204204-16204223 Msa1316200:five_prime_UTR 45.0%
TTCAAGTCTGTCTGCAGGTT+TGG - chr8_4:16204209-16204228 Msa1316200:five_prime_UTR 45.0%
CAACTCGGAAAGACAAGCAT+GGG + chr8_4:16204468-16204487 None:intergenic 45.0%
ACAACTCGGAAAGACAAGCA+TGG + chr8_4:16204469-16204488 None:intergenic 45.0%
TGCTTGTCTTTCCGAGTTGT+TGG - chr8_4:16204469-16204488 Msa1316200:five_prime_UTR 45.0%
GCTTGTCTTTCCGAGTTGTT+GGG - chr8_4:16204470-16204489 Msa1316200:five_prime_UTR 45.0%
!! CTTTGAGTTGCCCAACAACT+CGG + chr8_4:16204483-16204502 None:intergenic 45.0%
GAGTTGTTGGGCAACTCAAA+GGG - chr8_4:16204482-16204501 Msa1316200:five_prime_UTR 45.0%
GGCAACCAACAAATGTCCAT+GGG + chr8_4:16204665-16204684 None:intergenic 45.0%
AGGCAACCAACAAATGTCCA+TGG + chr8_4:16204666-16204685 None:intergenic 45.0%
! TGGACATTTGTTGGTTGCCT+TGG - chr8_4:16204666-16204685 Msa1316200:intron 45.0%
! GGACATTTGTTGGTTGCCTT+GGG - chr8_4:16204667-16204686 Msa1316200:intron 45.0%
! GACATTTGTTGGTTGCCTTG+GGG - chr8_4:16204668-16204687 Msa1316200:intron 45.0%
! ACATTTGTTGGTTGCCTTGG+GGG - chr8_4:16204669-16204688 Msa1316200:intron 45.0%
!! TTTTCTGGTGGAGAACATCC+TGG - chr8_4:16205001-16205020 Msa1316200:intron 45.0%
GTGGAGAACATCCTGGTTAT+TGG - chr8_4:16205008-16205027 Msa1316200:intron 45.0%
AGCGACTATGTCCAATAACC+AGG + chr8_4:16205022-16205041 None:intergenic 45.0%
GTTATTGGACATAGTCGCTG+TGG - chr8_4:16205023-16205042 Msa1316200:intron 45.0%
TCTGTGTTCCTGTTCACGTT+TGG - chr8_4:16205155-16205174 Msa1316200:intron 45.0%
! AAGGTACTCCAAACGTGAAC+AGG + chr8_4:16205166-16205185 None:intergenic 45.0%
AGCACAAAGAGCCACAACAA+TGG + chr8_4:16205231-16205250 None:intergenic 45.0%
GAAACAGAGGAAACTCTGCA+AGG + chr8_4:16205262-16205281 None:intergenic 45.0%
!! GGGCTTTGAGTATCATGCTT+GGG - chr8_4:16205352-16205371 Msa1316200:intron 45.0%
!! GGCTTTGAGTATCATGCTTG+GGG - chr8_4:16205353-16205372 Msa1316200:intron 45.0%
GGTAGTTTATCCTCAGCTGA+TGG + chr8_4:16205582-16205601 None:intergenic 45.0%
TTATATGGCTAGGTACCCTG+AGG - chr8_4:16206380-16206399 Msa1316200:intron 45.0%
CTCATGGCTAATACCAAGCT+TGG - chr8_4:16206414-16206433 Msa1316200:intron 45.0%
GGGCTTCTTAATGCAACATG+TGG - chr8_4:16207263-16207282 Msa1316200:five_prime_UTR 45.0%
CTTGGAACTTCCCTACTTTG+TGG - chr8_4:16207392-16207411 Msa1316200:five_prime_UTR 45.0%
TGCAATGCCACCACAAAGTA+GGG + chr8_4:16207405-16207424 None:intergenic 45.0%
TTGCAATGCCACCACAAAGT+AGG + chr8_4:16207406-16207425 None:intergenic 45.0%
!!! TTTTTTTTTTTTTTGAATTA+TGG - chr8_4:16203288-16203307 Msa1316200:intron 5.0%
!!! TTTTTTTTTTTTTGAATTAT+GGG - chr8_4:16203289-16203308 Msa1316200:intron 5.0%
ACGGGAACGAGAGAGAAAGA+AGG - chr8_4:16200224-16200243 Msa1316200:CDS 50.0%
GAGAGAAAGAAGGAAGTCGC+CGG - chr8_4:16200234-16200253 Msa1316200:CDS 50.0%
AACGAGGAAAGGAGAAACGC+TGG - chr8_4:16200262-16200281 Msa1316200:CDS 50.0%
!! GAAAACGATTTCTGGTGCGC+CGG + chr8_4:16200562-16200581 None:intergenic 50.0%
AGAGCGGCGAAAACGATTTC+TGG + chr8_4:16200570-16200589 None:intergenic 50.0%
! AGAAATCGTTTTCGCCGCTC+TGG - chr8_4:16200569-16200588 Msa1316200:CDS 50.0%
CAGACAGAGGACCACATTGT+TGG + chr8_4:16201012-16201031 None:intergenic 50.0%
TGGAGGGATATCACAGACAG+AGG + chr8_4:16201025-16201044 None:intergenic 50.0%
GTCTGTGATATCCCTCCAAC+TGG - chr8_4:16201027-16201046 Msa1316200:five_prime_UTR 50.0%
TCAGCCAAAGTGGGAAAGTG+AGG + chr8_4:16201567-16201586 None:intergenic 50.0%
!! GGTGGATATTTTAGGAGGGC+TGG - chr8_4:16202379-16202398 Msa1316200:five_prime_UTR 50.0%
!! GGGCCTATTTTGGAGGATGA+AGG - chr8_4:16202802-16202821 Msa1316200:five_prime_UTR 50.0%
! AGGATGAAGGTGCATGTCTG+TGG - chr8_4:16202815-16202834 Msa1316200:five_prime_UTR 50.0%
! GGATGAAGGTGCATGTCTGT+GGG - chr8_4:16202816-16202835 Msa1316200:five_prime_UTR 50.0%
ATTGGAACTGACGGGGAATG+TGG - chr8_4:16203318-16203337 Msa1316200:intron 50.0%
AACTGACGGGGAATGTGGTA+TGG - chr8_4:16203323-16203342 Msa1316200:intron 50.0%
CGGGGAATGTGGTATGGTAT+TGG - chr8_4:16203329-16203348 Msa1316200:intron 50.0%
TGTTGTAGTCGGATCAGAGG+TGG - chr8_4:16203430-16203449 Msa1316200:five_prime_UTR 50.0%
! AGGTGGACAAGCTTTGTGAC+AGG - chr8_4:16203447-16203466 Msa1316200:five_prime_UTR 50.0%
! GGTGGACAAGCTTTGTGACA+GGG - chr8_4:16203448-16203467 Msa1316200:five_prime_UTR 50.0%
TCCATTGACAGCCACATCCA+AGG + chr8_4:16203572-16203591 None:intergenic 50.0%
TTGGATGTGGCTGTCAATGG+AGG - chr8_4:16203571-16203590 Msa1316200:intron 50.0%
TGGATGTGGCTGTCAATGGA+GGG - chr8_4:16203572-16203591 Msa1316200:intron 50.0%
CTTGTTCGTTCAAACCCCAC+AGG + chr8_4:16203845-16203864 None:intergenic 50.0%
GAAACGGGAAGGACAATCAG+TGG + chr8_4:16204112-16204131 None:intergenic 50.0%
GCATCATTAGCTGCACACCA+CGG - chr8_4:16204166-16204185 Msa1316200:intron 50.0%
! AGTCTGTCTGCAGGTTTGGT+TGG - chr8_4:16204213-16204232 Msa1316200:five_prime_UTR 50.0%
AGCCAGACCATCTGCAAGAA+GGG + chr8_4:16204245-16204264 None:intergenic 50.0%
CAGATGGTCTGGCTGTTACT+GGG - chr8_4:16204251-16204270 Msa1316200:five_prime_UTR 50.0%
CGAGTTGTTGGGCAACTCAA+AGG - chr8_4:16204481-16204500 Msa1316200:five_prime_UTR 50.0%
TCTTGTACCCAGATGAGGAG+GGG + chr8_4:16204536-16204555 None:intergenic 50.0%
GTCTTGTACCCAGATGAGGA+GGG + chr8_4:16204537-16204556 None:intergenic 50.0%
! AGTCTTGTACCCAGATGAGG+AGG + chr8_4:16204538-16204557 None:intergenic 50.0%
! AGCAGTCTTGTACCCAGATG+AGG + chr8_4:16204541-16204560 None:intergenic 50.0%
CACCAGGTGTTAGATACCCA+TGG - chr8_4:16204646-16204665 Msa1316200:intron 50.0%
GTCCATGGGTATCTAACACC+TGG + chr8_4:16204651-16204670 None:intergenic 50.0%
! TGCCTTGGGGGTATGGTTTA+TGG - chr8_4:16204681-16204700 Msa1316200:five_prime_UTR 50.0%
GTATGGTTTATGGCCGTCGA+TGG - chr8_4:16204691-16204710 Msa1316200:five_prime_UTR 50.0%
TATTGATGCAGCCTCATCCG+CGG + chr8_4:16204936-16204955 None:intergenic 50.0%
ATTGGACATAGTCGCTGTGG+CGG - chr8_4:16205026-16205045 Msa1316200:intron 50.0%
TATGGAGCAGACCCATCATC+TGG + chr8_4:16205074-16205093 None:intergenic 50.0%
TGGTTGCACCTCTTCTACAG+TGG - chr8_4:16205317-16205336 Msa1316200:intron 50.0%
GGTTGCACCTCTTCTACAGT+GGG - chr8_4:16205318-16205337 Msa1316200:intron 50.0%
!! GGGGCTTTGAGTATCATGCT+TGG - chr8_4:16205351-16205370 Msa1316200:intron 50.0%
TGTTCTGATTCAGGCTGCAG+TGG - chr8_4:16205386-16205405 Msa1316200:intron 50.0%
GTGCTGCGCTATTAAAGAGG+TGG - chr8_4:16206300-16206319 Msa1316200:intron 50.0%
TTGTACACTAGCGGGACAAC+AGG - chr8_4:16207015-16207034 Msa1316200:intron 50.0%
ACCTGTAGGACCAGTGAAGA+AGG + chr8_4:16207102-16207121 None:intergenic 50.0%
GGAACTTCCCTACTTTGTGG+TGG - chr8_4:16207395-16207414 Msa1316200:five_prime_UTR 50.0%
TGTGGTGGCATTGCAAACCT+TGG - chr8_4:16207410-16207429 Msa1316200:five_prime_UTR 50.0%
TGGCATTGCAAACCTTGGAG+TGG - chr8_4:16207415-16207434 Msa1316200:five_prime_UTR 50.0%
GAAGTCGCCGGCAAAAAACG+AGG - chr8_4:16200246-16200265 Msa1316200:CDS 55.0%
CGCCGGCAAAAAACGAGGAA+AGG - chr8_4:16200251-16200270 Msa1316200:CDS 55.0%
AAGAGAGACGGCGAGAGAAG+AGG - chr8_4:16200343-16200362 Msa1316200:CDS 55.0%
GCAGCCTCACTTTCCCACTT+TGG - chr8_4:16201560-16201579 Msa1316200:five_prime_UTR 55.0%
GCCTTGGATGTGGCTGTCAA+TGG - chr8_4:16203568-16203587 Msa1316200:intron 55.0%
ACACCACGGAGCAACATCTG+TGG - chr8_4:16204180-16204199 Msa1316200:intron 55.0%
GCAGTGTCCCTTCTTGCAGA+TGG - chr8_4:16204235-16204254 Msa1316200:five_prime_UTR 55.0%
GTCCCTTCTTGCAGATGGTC+TGG - chr8_4:16204240-16204259 Msa1316200:five_prime_UTR 55.0%
CAGCCAGACCATCTGCAAGA+AGG + chr8_4:16204246-16204265 None:intergenic 55.0%
GCAGATGGTCTGGCTGTTAC+TGG - chr8_4:16204250-16204269 Msa1316200:five_prime_UTR 55.0%
CAGTCTTCCCCTCCTCATCT+GGG - chr8_4:16204526-16204545 Msa1316200:five_prime_UTR 55.0%
! TGTTGGTTGCCTTGGGGGTA+TGG - chr8_4:16204674-16204693 Msa1316200:intron 55.0%
GGCCATAAACCATACCCCCA+AGG + chr8_4:16204686-16204705 None:intergenic 55.0%
CTCTAATTCGACCGCGGATG+AGG - chr8_4:16204922-16204941 Msa1316200:intron 55.0%
! GTCGCTGTGGCGGAATATCA+AGG - chr8_4:16205036-16205055 Msa1316200:intron 55.0%
GCCTTCTTCACTGGTCCTAC+AGG - chr8_4:16207098-16207117 Msa1316200:five_prime_UTR 55.0%
GGAGCAACTTCAACGGCGAC+CGG - chr8_4:16200540-16200559 Msa1316200:intron 60.0%
!! GCAGGTGTTGGCCTTGGATG+TGG - chr8_4:16203558-16203577 Msa1316200:intron 60.0%
GGCTGTCAATGGAGGGACCA+AGG - chr8_4:16203579-16203598 Msa1316200:intron 60.0%
CAGCCACAGATGTTGCTCCG+TGG + chr8_4:16204186-16204205 None:intergenic 60.0%
TGGTCTGGCTGTTACTGGGC+AGG - chr8_4:16204255-16204274 Msa1316200:five_prime_UTR 60.0%
CCAGATGAGGAGGGGAAGAC+TGG + chr8_4:16204528-16204547 None:intergenic 60.0%
CCAGTCTTCCCCTCCTCATC+TGG - chr8_4:16204525-16204544 Msa1316200:five_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 16200211 16207450 16200211 ID=Msa1316200;Name=Msa1316200
chr8_4 mRNA 16200211 16207450 16200211 ID=Msa1316200-mRNA-1;Parent=Msa1316200;Name=Msa1316200-mRNA-1;_AED=0.14;_eAED=0.14;_QI=3797|0.85|0.86|1|0.35|0.26|15|0|189
chr8_4 exon 16200211 16200298 16200211 ID=Msa1316200-mRNA-1:exon:6174;Parent=Msa1316200-mRNA-1
chr8_4 exon 16200313 16200434 16200313 ID=Msa1316200-mRNA-1:exon:6173;Parent=Msa1316200-mRNA-1
chr8_4 exon 16200542 16200666 16200542 ID=Msa1316200-mRNA-1:exon:6172;Parent=Msa1316200-mRNA-1
chr8_4 exon 16200778 16203009 16200778 ID=Msa1316200-mRNA-1:exon:6171;Parent=Msa1316200-mRNA-1
chr8_4 exon 16203385 16203514 16203385 ID=Msa1316200-mRNA-1:exon:6170;Parent=Msa1316200-mRNA-1
chr8_4 exon 16203953 16204099 16203953 ID=Msa1316200-mRNA-1:exon:6169;Parent=Msa1316200-mRNA-1
chr8_4 exon 16204192 16204596 16204192 ID=Msa1316200-mRNA-1:exon:6168;Parent=Msa1316200-mRNA-1
chr8_4 exon 16204681 16204878 16204681 ID=Msa1316200-mRNA-1:exon:6167;Parent=Msa1316200-mRNA-1
chr8_4 exon 16205398 16205478 16205398 ID=Msa1316200-mRNA-1:exon:6166;Parent=Msa1316200-mRNA-1
chr8_4 exon 16205814 16205916 16205814 ID=Msa1316200-mRNA-1:exon:6165;Parent=Msa1316200-mRNA-1
chr8_4 exon 16206037 16206129 16206037 ID=Msa1316200-mRNA-1:exon:6164;Parent=Msa1316200-mRNA-1
chr8_4 exon 16206466 16206775 16206466 ID=Msa1316200-mRNA-1:exon:6163;Parent=Msa1316200-mRNA-1
chr8_4 exon 16206862 16206913 16206862 ID=Msa1316200-mRNA-1:exon:6162;Parent=Msa1316200-mRNA-1
chr8_4 exon 16207055 16207134 16207055 ID=Msa1316200-mRNA-1:exon:6161;Parent=Msa1316200-mRNA-1
chr8_4 exon 16207250 16207450 16207250 ID=Msa1316200-mRNA-1:exon:6160;Parent=Msa1316200-mRNA-1
chr8_4 five_prime_UTR 16207250 16207450 16207250 ID=Msa1316200-mRNA-1:five_prime_utr;Parent=Msa1316200-mRNA-1
chr8_4 five_prime_UTR 16207055 16207134 16207055 ID=Msa1316200-mRNA-1:five_prime_utr;Parent=Msa1316200-mRNA-1
chr8_4 five_prime_UTR 16206862 16206913 16206862 ID=Msa1316200-mRNA-1:five_prime_utr;Parent=Msa1316200-mRNA-1
chr8_4 five_prime_UTR 16206466 16206775 16206466 ID=Msa1316200-mRNA-1:five_prime_utr;Parent=Msa1316200-mRNA-1
chr8_4 five_prime_UTR 16206037 16206129 16206037 ID=Msa1316200-mRNA-1:five_prime_utr;Parent=Msa1316200-mRNA-1
chr8_4 five_prime_UTR 16205814 16205916 16205814 ID=Msa1316200-mRNA-1:five_prime_utr;Parent=Msa1316200-mRNA-1
chr8_4 five_prime_UTR 16205398 16205478 16205398 ID=Msa1316200-mRNA-1:five_prime_utr;Parent=Msa1316200-mRNA-1
chr8_4 five_prime_UTR 16204681 16204878 16204681 ID=Msa1316200-mRNA-1:five_prime_utr;Parent=Msa1316200-mRNA-1
chr8_4 five_prime_UTR 16204192 16204596 16204192 ID=Msa1316200-mRNA-1:five_prime_utr;Parent=Msa1316200-mRNA-1
chr8_4 five_prime_UTR 16203953 16204099 16203953 ID=Msa1316200-mRNA-1:five_prime_utr;Parent=Msa1316200-mRNA-1
chr8_4 five_prime_UTR 16203385 16203514 16203385 ID=Msa1316200-mRNA-1:five_prime_utr;Parent=Msa1316200-mRNA-1
chr8_4 five_prime_UTR 16201013 16203009 16201013 ID=Msa1316200-mRNA-1:five_prime_utr;Parent=Msa1316200-mRNA-1
chr8_4 CDS 16200778 16201012 16200778 ID=Msa1316200-mRNA-1:cds;Parent=Msa1316200-mRNA-1
chr8_4 CDS 16200542 16200666 16200542 ID=Msa1316200-mRNA-1:cds;Parent=Msa1316200-mRNA-1
chr8_4 CDS 16200313 16200434 16200313 ID=Msa1316200-mRNA-1:cds;Parent=Msa1316200-mRNA-1
chr8_4 CDS 16200211 16200298 16200211 ID=Msa1316200-mRNA-1:cds;Parent=Msa1316200-mRNA-1
Gene Sequence

>Msa1316200

ATGCTTCAAAATGAACCTTACCTAAGGAAGAAAAAAATTGGCGATGTGTCTGCTATATTGAGTACTGAAGATCATGGTGAATTAATGCAAAGCATTGCCAATAAAACCTCTTCTCAGTTTTTCCATATTCTGCCTGTTCCTAATAATTCCTCTAAGAAGAGTAGTAGAAATGGACATTCACAAAATGGGGAAATTGATGCAGAAAGAATTTTCCTGAAAAATGTCGAAAGATCAAGTGAAGATTCGGCACTGATTTTGTACACTAGCGGGACAACAGGTAAAAACAAACAGATATTAGATTGTATGCTGATTGTTACTTCAAATTTTGCAGACAAATTGCCTTCTTCACTGGTCCTACAGCTAAATGTTTATGTATTCTCTATTATTACAGTTGGAGGGCTTCTTAATGCAACATGTGGGAATATTAGTGAGCTGATAATAGCAATATTTGCTCTTAGCAGCAACCAAATTGTTGTTGTCAAGTTCCATCCTTTCAAACCTTCTTCTTGTGCTTGGAACTTCCCTACTTTGTGGTGGCATTGCAAACCTTGGAGTGGAGCAAAAATATGA
Protein sequence

>Msa1316200

MLQNEPYLRKKKIGDVSAILSTEDHGELMQSIANKTSSQFFHILPVPNNSSKKSSRNGHSQNGEIDAERIFLKNVERSSEDSALILYTSGTTGKNKQILDCMLIVTSNFADKLPSSLVLQLNVYVFSIITVGGLLNATCGNISELIIAIFALSSNQIVVVKFHPFKPSSCAWNFPTLWWHCKPWSGAKI*