AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1307070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1307070 MtrunA17_Chr4g0004091 82.353 85 14 1 15 99 162 245 7.97e-41 141
Msa1307070 MtrunA17_Chr7g0242351 88.000 75 9 0 122 196 121 195 7.22e-35 129
Msa1307070 MtrunA17_Chr4g0004831 68.966 87 26 1 15 101 157 242 3.01e-32 118
Msa1307070 MtrunA17_Chr4g0006841 87.879 66 8 0 131 196 2 67 1.81e-22 94.0
Msa1307070 MtrunA17_Chr5g0429881 79.104 67 14 0 130 196 123 189 6.40e-18 82.0
Msa1307070 MtrunA17_Chr2g0334171 44.545 110 56 3 87 196 93 197 1.47e-15 75.1
Msa1307070 MtrunA17_Chr3g0120501 56.716 67 29 0 130 196 122 188 2.57e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1307070 AT2G38170.2 77.612 67 15 0 130 196 127 193 2.10e-27 108
Msa1307070 AT2G38170.1 77.612 67 15 0 130 196 127 193 1.15e-26 107
Msa1307070 AT2G38170.3 77.612 67 15 0 130 196 127 193 1.48e-26 107
Msa1307070 AT3G51860.2 77.612 67 15 0 130 196 127 193 5.54e-26 105
Msa1307070 AT3G51860.1 77.612 67 15 0 130 196 127 193 7.28e-26 105
Msa1307070 AT5G01490.2 65.152 66 23 0 130 195 128 193 2.23e-19 86.7
Msa1307070 AT5G01490.1 65.152 66 23 0 130 195 128 193 2.23e-19 86.7
Msa1307070 AT1G55730.1 59.740 77 29 1 120 196 121 195 3.03e-18 83.6
Msa1307070 AT1G55730.2 59.740 77 29 1 120 196 121 195 3.03e-18 83.6
Msa1307070 AT3G13320.1 59.701 67 27 0 130 196 129 195 1.24e-17 81.6
Msa1307070 AT1G55720.1 59.701 67 27 0 130 196 140 206 9.56e-17 79.3
Msa1307070 AT1G55720.2 59.701 67 27 0 130 196 140 206 9.90e-17 79.0
Msa1307070 AT3G16170.1 44.706 85 39 2 15 99 177 253 1.10e-11 64.3

Find 223 sgRNAs with CRISPR-Local

Find 455 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGACATGATTTGATTATT+TGG 0.151687 8_4:+2284605 Msa1307070:five_prime_UTR
GTCAGAGTTGCTTGAAATTA+TGG 0.160584 8_4:+2280096 Msa1307070:five_prime_UTR
TTGAATTATGGGACTGATAT+TGG 0.174250 8_4:+2281639 Msa1307070:five_prime_UTR
GAAATTATGGTTCTACATTT+TGG 0.175123 8_4:+2280109 Msa1307070:five_prime_UTR
ACTAACTCTTCCTATGTTAT+AGG 0.177052 8_4:+2284258 Msa1307070:five_prime_UTR
GCAGATGGTCTGGCTGTTAC+TGG 0.190384 8_4:+2282589 Msa1307070:five_prime_UTR
TTCTTGGTGTAGTAATTAAT+TGG 0.196867 8_4:+2284804 Msa1307070:five_prime_UTR
TGTATTAGTTGTTCTGATTC+AGG 0.198011 8_4:+2283716 Msa1307070:five_prime_UTR
TAGCAAAGGTTATATGATTT+TGG 0.198437 8_4:+2281718 Msa1307070:five_prime_UTR
ATTTGAAAATTTCATATAAA+AGG 0.216554 8_4:-2284910 None:intergenic
CATATAACAAGGGCCTATTT+TGG 0.217274 8_4:+2281132 Msa1307070:five_prime_UTR
AGAAATGGACATTCACAAAA+TGG 0.249033 8_4:+2285153 Msa1307070:CDS
CCACATTTAATGACACATTA+AGG 0.259081 8_4:+2283231 Msa1307070:five_prime_UTR
TAATGCTCAAGGGTCAAATA+TGG 0.261472 8_4:-2281498 None:intergenic
CACATCGATAATATCATTCT+TGG 0.263207 8_4:+2284788 Msa1307070:five_prime_UTR
GTGGAGAACATCCTGGTTAT+TGG 0.266622 8_4:+2283347 Msa1307070:five_prime_UTR
GGACATTTGTTGGTTGCCTT+GGG 0.273965 8_4:+2283006 Msa1307070:five_prime_UTR
AATACTTGACAACAACAATT+TGG 0.278361 8_4:-2285670 None:intergenic
TCTGTGAACATTAAGAATTC+AGG 0.289712 8_4:+2284853 Msa1307070:five_prime_UTR
AATTCAAACTACTTTAAATA+AGG 0.296473 8_4:-2284014 None:intergenic
ATATTTGACCCTTGAGCATT+AGG 0.298623 8_4:+2281500 Msa1307070:five_prime_UTR
TGCTATCAACATATGATATA+AGG 0.299792 8_4:-2281700 None:intergenic
TGGACATTTGTTGGTTGCCT+TGG 0.301067 8_4:+2283005 Msa1307070:five_prime_UTR
TTCAAGTCTGTCTGCAGGTT+TGG 0.305191 8_4:+2282548 Msa1307070:five_prime_UTR
GCACCTTCATCCTCCAAAAT+AGG 0.311181 8_4:-2281145 None:intergenic
CTTTATCACAAGATGTATTC+TGG 0.311204 8_4:+2284080 Msa1307070:five_prime_UTR
CTTCTCTGGTGTTTGTAAGA+TGG 0.311849 8_4:+2284351 Msa1307070:five_prime_UTR
TGGCGACTTCAATTGCCTTT+AGG 0.318075 8_4:+2279943 Msa1307070:five_prime_UTR
GCATTGAACTCACATTTATA+TGG 0.320058 8_4:+2284704 Msa1307070:five_prime_UTR
GCTGAAGCTGGATGGTATTA+AGG 0.320722 8_4:+2281990 Msa1307070:five_prime_UTR
CAAAACAGAGAGACATTTCA+TGG 0.323574 8_4:+2279864 Msa1307070:intron
TATTAGGAACAGGCAGAATA+TGG 0.324406 8_4:-2285110 None:intergenic
GGGCTTTGAGTATCATGCTT+GGG 0.325151 8_4:+2283691 Msa1307070:five_prime_UTR
CTCTTCTTAGAGGAATTATT+AGG 0.332256 8_4:-2285126 None:intergenic
GAATTGTATGTTACATACTA+TGG 0.334240 8_4:-2284486 None:intergenic
CATTAATTTGAATGAGTCAT+TGG 0.343657 8_4:+2284572 Msa1307070:five_prime_UTR
GCCTCAAACCCATCAATTCT+TGG 0.350859 8_4:+2280582 Msa1307070:five_prime_UTR
CTATAATTCATGTCTTACTA+TGG 0.351625 8_4:-2283428 None:intergenic
GCTATCTTGAATCTGTTATA+AGG 0.361376 8_4:+2284399 Msa1307070:five_prime_UTR
AGAGCGGCGAAAACGATTTC+TGG 0.365404 8_4:-2278907 None:intergenic
AGCATAATGAAATGATATAA+AGG 0.366473 8_4:+2284682 Msa1307070:five_prime_UTR
AAGAGAAAAGAGAGAGAAAC+GGG 0.368057 8_4:+2278546 None:intergenic
ATTTCTACTACTCTTCTTAG+AGG 0.368543 8_4:-2285136 None:intergenic
TCAAACCTTCTTCTTGTGCT+TGG 0.370945 8_4:+2285713 Msa1307070:CDS
ATACATTCTTGCATTCTTGC+TGG 0.372714 8_4:+2280527 Msa1307070:five_prime_UTR
TTCTCTGGTGTTTGTAAGAT+GGG 0.373179 8_4:+2284352 Msa1307070:five_prime_UTR
AGAAATTTACCAAGAATTGA+TGG 0.374874 8_4:-2280591 None:intergenic
GAAATGGACATTCACAAAAT+GGG 0.380131 8_4:+2285154 Msa1307070:CDS
AATTAATTGGATACTCTTAG+AGG 0.381202 8_4:+2284817 Msa1307070:five_prime_UTR
CTTCAAATCAAATAGAATAA+AGG 0.384179 8_4:-2281532 None:intergenic
GTCCCTTCTTGCAGATGGTC+TGG 0.395924 8_4:+2282579 Msa1307070:five_prime_UTR
GTACAACCCTGCATTTAATC+AGG 0.396598 8_4:+2283130 Msa1307070:five_prime_UTR
TCTGTGTTCCTGTTCACGTT+TGG 0.404197 8_4:+2283494 Msa1307070:five_prime_UTR
TTAGAGGAATTATTAGGAAC+AGG 0.407537 8_4:-2285120 None:intergenic
GCCTTGGATGTGGCTGTCAA+TGG 0.409273 8_4:+2281907 Msa1307070:five_prime_UTR
TGTTTAGAAAATAGTGAAGT+AGG 0.409335 8_4:-2283153 None:intergenic
AAAGAGAAAAGAGAGAGAAA+CGG 0.412258 8_4:+2278545 None:intergenic
TCTAAGAAGAGTAGTAGAAA+TGG 0.413474 8_4:+2285138 Msa1307070:CDS
GCCTTCTTCACTGGTCCTAC+AGG 0.414576 8_4:+2285437 Msa1307070:CDS
TTCTCAGGATTTGATAAGTT+AGG 0.415472 8_4:-2285897 None:intergenic
TGCATTTCAAGTCTGTCTGC+AGG 0.423557 8_4:+2282543 Msa1307070:five_prime_UTR
TGGCTGAATCTATAGCTTTG+AGG 0.427204 8_4:+2279920 Msa1307070:five_prime_UTR
AGACAGAGGACCACATTGTT+GGG 0.427721 8_4:-2279348 None:intergenic
CTTTGGATTAGGTGAAGATT+CGG 0.431233 8_4:+2285323 Msa1307070:intron
CGGGGAATGTGGTATGGTAT+TGG 0.431968 8_4:+2281668 Msa1307070:five_prime_UTR
AATTGCCATGTTATGAAGTC+TGG 0.432315 8_4:+2284232 Msa1307070:five_prime_UTR
GCAGCCTCACTTTCCCACTT+TGG 0.433441 8_4:+2279900 Msa1307070:five_prime_UTR
CTCTAATTCGACCGCGGATG+AGG 0.433910 8_4:+2283261 Msa1307070:five_prime_UTR
CTTGGAACTTCCCTACTTTG+TGG 0.435724 8_4:+2285731 Msa1307070:CDS
TGACTACAAAGTTGCTTATG+AGG 0.436885 8_4:+2281962 Msa1307070:five_prime_UTR
AAGGTACTCCAAACGTGAAC+AGG 0.439557 8_4:-2283502 None:intergenic
GTCTGTGATATCCCTCCAAC+TGG 0.443028 8_4:+2279367 Msa1307070:five_prime_UTR
CTCATGGCTAATACCAAGCT+TGG 0.444317 8_4:+2284753 Msa1307070:five_prime_UTR
ATTCAAATTAATGATTCAAA+AGG 0.445879 8_4:-2284562 None:intergenic
GTATTCTCTATTATTACAGT+TGG 0.447728 8_4:+2285578 Msa1307070:CDS
TTCTCTATTATTACAGTTGG+AGG 0.450730 8_4:+2285581 Msa1307070:CDS
ACCAAGAATTGATGGGTTTG+AGG 0.454450 8_4:-2280583 None:intergenic
GCAGAAACATCCATGTTCTC+AGG 0.459801 8_4:-2285912 None:intergenic
AAATTCTTTGTCAGAAACCT+TGG 0.460069 8_4:-2281935 None:intergenic
GCAGTGTCCCTTCTTGCAGA+TGG 0.462165 8_4:+2282574 Msa1307070:five_prime_UTR
AGACAAATTGCCTTCTTCAC+TGG 0.464133 8_4:+2285428 Msa1307070:CDS
AGAAACGCTGGAAGCAGAAA+AGG 0.466098 8_4:+2278614 Msa1307070:five_prime_UTR
TCCTATGTTATAGGCTCAAA+GGG 0.466569 8_4:+2284267 Msa1307070:five_prime_UTR
TTGTACACTAGCGGGACAAC+AGG 0.468065 8_4:+2285354 Msa1307070:CDS
GCAGGTGTTGGCCTTGGATG+TGG 0.469671 8_4:+2281897 Msa1307070:intron
TTGCAGTAAAAGTCTATCAA+TGG 0.472340 8_4:-2284508 None:intergenic
CACAAGATGAAATATCAAAC+AGG 0.475511 8_4:-2283939 None:intergenic
TATGGAGCAGACCCATCATC+TGG 0.478875 8_4:-2283410 None:intergenic
GGCTTTGAGTATCATGCTTG+GGG 0.484533 8_4:+2283692 Msa1307070:five_prime_UTR
AATCTGCTAAGATGAATGTC+TGG 0.487923 8_4:-2283072 None:intergenic
TGGGTTAACATATTTCTTTG+TGG 0.488049 8_4:+2281175 Msa1307070:five_prime_UTR
AAGTTCCAAGCACAAGAAGA+AGG 0.489149 8_4:-2285718 None:intergenic
GTATGGTTTATGGCCGTCGA+TGG 0.489821 8_4:+2283030 Msa1307070:five_prime_UTR
AATGCTCAAGGGTCAAATAT+GGG 0.489935 8_4:-2281497 None:intergenic
CTTATGAGTCATCCAGATGA+TGG 0.490635 8_4:+2283398 Msa1307070:five_prime_UTR
TATGAGGAAATTGCTGAAGC+TGG 0.492669 8_4:+2281978 Msa1307070:five_prime_UTR
GGGGCTTTGAGTATCATGCT+TGG 0.492882 8_4:+2283690 Msa1307070:five_prime_UTR
AAGAAGAAGGTTTGAAAGGA+TGG 0.493952 8_4:-2285705 None:intergenic
TTCCTATGTTATAGGCTCAA+AGG 0.494413 8_4:+2284266 Msa1307070:five_prime_UTR
AAGAGAGACGGCGAGAGAAG+AGG 0.494605 8_4:+2278683 Msa1307070:five_prime_UTR
TTTCAAGCTGTTGTTGTAGT+CGG 0.495225 8_4:+2281758 Msa1307070:five_prime_UTR
CAGACAGAGGACCACATTGT+TGG 0.495813 8_4:-2279349 None:intergenic
TTGGATGTGGCTGTCAATGG+AGG 0.496098 8_4:+2281910 Msa1307070:five_prime_UTR
AGGTACCAAGATAATGTCAA+TGG 0.498319 8_4:-2284890 None:intergenic
AGACAAATTCAAATGAGAAC+CGG 0.498664 8_4:-2284301 None:intergenic
CAGATGGTCTGGCTGTTACT+GGG 0.499341 8_4:+2282590 Msa1307070:five_prime_UTR
TTATAAGGTGCATGACTCAT+TGG 0.501330 8_4:+2284414 Msa1307070:five_prime_UTR
AGTCTGTCTGCAGGTTTGGT+TGG 0.501509 8_4:+2282552 Msa1307070:five_prime_UTR
AGCCAGACCATCTGCAAGAA+GGG 0.503762 8_4:-2282581 None:intergenic
CTTATCAAATCCTGAGAACA+TGG 0.506225 8_4:+2285902 Msa1307070:CDS
GAAATCTATCAGCGTTCCTA+CGG 0.506580 8_4:+2285944 Msa1307070:CDS
AGATACCCATGGACATTTGT+TGG 0.507005 8_4:+2282996 Msa1307070:five_prime_UTR
TGGTCTGGCTGTTACTGGGC+AGG 0.507254 8_4:+2282594 Msa1307070:five_prime_UTR
GGTTGCACCTCTTCTACAGT+GGG 0.508466 8_4:+2283657 Msa1307070:five_prime_UTR
TGCAATGCCACCACAAAGTA+GGG 0.510435 8_4:-2285741 None:intergenic
GACATTTGTTGGTTGCCTTG+GGG 0.510883 8_4:+2283007 Msa1307070:five_prime_UTR
AGGTGGACAAGCTTTGTGAC+AGG 0.514120 8_4:+2281786 Msa1307070:five_prime_UTR
GGAGCAACTTCAACGGCGAC+CGG 0.515365 8_4:+2278880 Msa1307070:five_prime_UTR
GGGACTGATATTGGAACTGA+CGG 0.518405 8_4:+2281648 Msa1307070:five_prime_UTR
GATGAAGAAGACTGAGATGA+TGG 0.518971 8_4:+2281290 Msa1307070:five_prime_UTR
ATTCATCATGCTTTGTTGAG+TGG 0.519397 8_4:+2279322 Msa1307070:five_prime_UTR
ACATTTGTTGGTTGCCTTGG+GGG 0.519735 8_4:+2283008 Msa1307070:five_prime_UTR
TTGTCTGCTAGCACTGATGA+AGG 0.519903 8_4:-2279503 None:intergenic
ACCTGTAGGACCAGTGAAGA+AGG 0.520142 8_4:-2285438 None:intergenic
TTGCAATGCCACCACAAAGT+AGG 0.522397 8_4:-2285742 None:intergenic
GAAATTTACCAAGAATTGAT+GGG 0.523336 8_4:-2280590 None:intergenic
TGGTTGCACCTCTTCTACAG+TGG 0.523657 8_4:+2283656 Msa1307070:five_prime_UTR
CTGGAAGCAGAAAAGGAAAA+CGG 0.524696 8_4:+2278621 Msa1307070:five_prime_UTR
TCTGTTACTATTATGTCAAG+AGG 0.527285 8_4:+2283095 Msa1307070:five_prime_UTR
GTCGCTGTGGCGGAATATCA+AGG 0.528675 8_4:+2283375 Msa1307070:five_prime_UTR
AAGTAGGCCTGATTAAATGC+AGG 0.531178 8_4:-2283137 None:intergenic
TCCCTTTGAGCCTATAACAT+AGG 0.532688 8_4:-2284268 None:intergenic
TCTAACAGTATACAATGCAT+TGG 0.532890 8_4:-2283455 None:intergenic
AGGCAACCAACAAATGTCCA+TGG 0.535521 8_4:-2283002 None:intergenic
CCTTAATGTGTCATTAAATG+TGG 0.538448 8_4:-2283231 None:intergenic
TGTTCTGATTCAGGCTGCAG+TGG 0.540068 8_4:+2283725 Msa1307070:five_prime_UTR
ATGATCTTGCCACTTGAGAC+AGG 0.540125 8_4:+2280166 Msa1307070:five_prime_UTR
GGAACTTCCCTACTTTGTGG+TGG 0.543624 8_4:+2285734 Msa1307070:CDS
TTCAAAATGAACCTTACCTA+AGG 0.546225 8_4:+2284992 Msa1307070:CDS
AGCTATAGATTCAGCCAAAG+TGG 0.551626 8_4:-2279914 None:intergenic
AGGAACACAGAATTTGTGCT+TGG 0.554925 8_4:-2283482 None:intergenic
AAAGAGAAACCTAATGCTCA+AGG 0.557434 8_4:-2281509 None:intergenic
AACGAGGAAAGGAGAAACGC+TGG 0.559120 8_4:+2278602 Msa1307070:five_prime_UTR
TCTCTATTATTACAGTTGGA+GGG 0.566642 8_4:+2285582 Msa1307070:CDS
CAGCCAGACCATCTGCAAGA+AGG 0.567876 8_4:-2282582 None:intergenic
GCACAAGAAGAAGGTTTGAA+AGG 0.568007 8_4:-2285709 None:intergenic
ACGGGAACGAGAGAGAAAGA+AGG 0.568350 8_4:+2278564 Msa1307070:five_prime_UTR
GAGAGAAAGAAGGAAGTCGC+CGG 0.568658 8_4:+2278574 Msa1307070:five_prime_UTR
AGGATGAAGGTGCATGTCTG+TGG 0.573626 8_4:+2281155 Msa1307070:five_prime_UTR
CAATAGCGCAAATACAGTGC+AGG 0.578498 8_4:-2279468 None:intergenic
AACTGACGGGGAATGTGGTA+TGG 0.578531 8_4:+2281662 Msa1307070:five_prime_UTR
ATATCATATGTTGATAGCAA+AGG 0.579023 8_4:+2281704 Msa1307070:five_prime_UTR
AGAAGAGGAAAGTGTTGTGT+TGG 0.580296 8_4:+2278698 Msa1307070:five_prime_UTR
GGACTGATATTGGAACTGAC+GGG 0.581432 8_4:+2281649 Msa1307070:five_prime_UTR
CACCAGGTGTTAGATACCCA+TGG 0.581790 8_4:+2282985 Msa1307070:intron
GCTATAGATTCAGCCAAAGT+GGG 0.582150 8_4:-2279913 None:intergenic
TGTGGTGGCATTGCAAACCT+TGG 0.582228 8_4:+2285749 Msa1307070:CDS
AAAAGTCGTCAGTTTCACCT+TGG 0.584041 8_4:-2283806 None:intergenic
AAAGTGCTGCGCTATTAAAG+AGG 0.588429 8_4:+2284636 Msa1307070:five_prime_UTR
TCAGCCAAAGTGGGAAAGTG+AGG 0.591035 8_4:-2279904 None:intergenic
TTATGAGTCATCCAGATGAT+GGG 0.591211 8_4:+2283399 Msa1307070:five_prime_UTR
TCAAAGGGATGAGATGATAC+CGG 0.591533 8_4:+2284282 Msa1307070:five_prime_UTR
AGAATCATACCTGTCTCAAG+TGG 0.592594 8_4:-2280175 None:intergenic
GGGCTTCTTAATGCAACATG+TGG 0.594840 8_4:+2285602 Msa1307070:CDS
GAAAACGATTTCTGGTGCGC+CGG 0.595717 8_4:-2278899 None:intergenic
TTAAGGCTGAAGGTGAAGCT+AGG 0.598267 8_4:+2282007 Msa1307070:five_prime_UTR
GGTGGACAAGCTTTGTGACA+GGG 0.600958 8_4:+2281787 Msa1307070:five_prime_UTR
TGGATGTGGCTGTCAATGGA+GGG 0.601202 8_4:+2281911 Msa1307070:five_prime_UTR
TTGGTTTGTGATTTGAAACA+CGG 0.602056 8_4:-2283787 None:intergenic
GAACTCACATTTATATGGCT+AGG 0.603522 8_4:+2284709 Msa1307070:five_prime_UTR
AACTATTTCAGAGACGAACA+TGG 0.603566 8_4:-2285972 None:intergenic
CTGGATGGTATTAAGGCTGA+AGG 0.605506 8_4:+2281997 Msa1307070:five_prime_UTR
GGTAGTTTATCCTCAGCTGA+TGG 0.610299 8_4:-2283918 None:intergenic
AAATGGACATTCACAAAATG+GGG 0.610443 8_4:+2285155 Msa1307070:CDS
GGCAACCAACAAATGTCCAT+GGG 0.610474 8_4:-2283001 None:intergenic
GTGCTGCGCTATTAAAGAGG+TGG 0.611390 8_4:+2284639 Msa1307070:five_prime_UTR
GGCTGTCAATGGAGGGACCA+AGG 0.612660 8_4:+2281918 Msa1307070:five_prime_UTR
GAATTATGTCATGCCAAGCT+TGG 0.613998 8_4:-2284766 None:intergenic
TTGGATCGGAGCAACTTCAA+CGG 0.616745 8_4:+2278873 Msa1307070:five_prime_UTR
TGTTGTAGTCGGATCAGAGG+TGG 0.622495 8_4:+2281769 Msa1307070:five_prime_UTR
AGGAAATTGCTGAAGCTGGA+TGG 0.623359 8_4:+2281982 Msa1307070:five_prime_UTR
ATTGGACATAGTCGCTGTGG+CGG 0.623980 8_4:+2283365 Msa1307070:five_prime_UTR
GGCTTCTTAATGCAACATGT+GGG 0.624011 8_4:+2285603 Msa1307070:CDS
AGAACTGCACACATATAACA+AGG 0.625816 8_4:+2281121 Msa1307070:intron
AGCGACTATGTCCAATAACC+AGG 0.626209 8_4:-2283358 None:intergenic
TCCATTGACAGCCACATCCA+AGG 0.628433 8_4:-2281908 None:intergenic
GCTAGCAGACAATTGAAATG+AGG 0.629593 8_4:+2279514 Msa1307070:five_prime_UTR
TGTCTGCTAGCACTGATGAA+GGG 0.630304 8_4:-2279502 None:intergenic
ATTGGAACTGACGGGGAATG+TGG 0.631334 8_4:+2281657 Msa1307070:five_prime_UTR
TGTTGTTGTAGTCGGATCAG+AGG 0.631350 8_4:+2281766 Msa1307070:five_prime_UTR
AGCACAAAGAGCCACAACAA+TGG 0.636601 8_4:-2283567 None:intergenic
TAGGTTGCAGAGAAAAGCTG+AGG 0.646000 8_4:+2282026 Msa1307070:five_prime_UTR
AAGAGAAACCTAATGCTCAA+GGG 0.646215 8_4:-2281508 None:intergenic
CTGAATCTATAGCTTTGAGG+TGG 0.647177 8_4:+2279923 Msa1307070:five_prime_UTR
GGATGAAGGTGCATGTCTGT+GGG 0.653172 8_4:+2281156 Msa1307070:five_prime_UTR
TTGTGGCAAAAGTTTCATTG+TGG 0.656530 8_4:+2281192 Msa1307070:five_prime_UTR
GTTATTGGACATAGTCGCTG+TGG 0.659023 8_4:+2283362 Msa1307070:five_prime_UTR
CTTCTGTTAAACAGAAACAG+AGG 0.660498 8_4:-2283611 None:intergenic
TGGCATTGCAAACCTTGGAG+TGG 0.662345 8_4:+2285754 Msa1307070:CDS
TCTACATTGGAAATGTGATG+TGG 0.665628 8_4:+2279403 Msa1307070:five_prime_UTR
AGTAGGCCTGATTAAATGCA+GGG 0.666271 8_4:-2283136 None:intergenic
AAACTGTAACAGCTACGACA+AGG 0.667234 8_4:-2283521 None:intergenic
TGGTGAAAACGAAAGAGAGA+CGG 0.672189 8_4:+2278671 Msa1307070:five_prime_UTR
GTGTTTCAAATCACAAACCA+AGG 0.673597 8_4:+2283789 Msa1307070:five_prime_UTR
GACTGATATTGGAACTGACG+GGG 0.676586 8_4:+2281650 Msa1307070:five_prime_UTR
TATTGATGCAGCCTCATCCG+CGG 0.677207 8_4:-2283272 None:intergenic
ATATTGAGTACTGAAGATCA+TGG 0.680453 8_4:+2285042 Msa1307070:CDS
ACACCACGGAGCAACATCTG+TGG 0.681879 8_4:+2282519 Msa1307070:five_prime_UTR
AATGAAATGAATGAAGACCA+AGG 0.691600 8_4:+2278730 Msa1307070:five_prime_UTR
ATTGGAAATGTGATGTGGAG+TGG 0.694431 8_4:+2279408 Msa1307070:five_prime_UTR
TGGAGGGATATCACAGACAG+AGG 0.699065 8_4:-2279362 None:intergenic
GAAACAGAGGAAACTCTGCA+AGG 0.701303 8_4:-2283598 None:intergenic
GCATCATTAGCTGCACACCA+CGG 0.701749 8_4:+2282505 Msa1307070:five_prime_UTR
TCTGAGATAAGAACCATCGA+CGG 0.702119 8_4:-2283043 None:intergenic
GCTCTGGATTTAGAATCAGA+AGG 0.704129 8_4:+2278925 Msa1307070:five_prime_UTR
GACGAACATGGACATACCGT+AGG 0.708954 8_4:-2285960 None:intergenic
TTCTGATTCTAAATCCAGAG+CGG 0.710095 8_4:-2278923 None:intergenic
TTATGACTCTAATTCGACCG+CGG 0.719978 8_4:+2283255 Msa1307070:five_prime_UTR
GTAAACCAGACTTCATAACA+TGG 0.720190 8_4:-2284237 None:intergenic
GAACTGCACACATATAACAA+GGG 0.730274 8_4:+2281122 Msa1307070:intron
CAGCCACAGATGTTGCTCCG+TGG 0.739945 8_4:-2282522 None:intergenic
TGAGTGGATTCCCAACAATG+TGG 0.745572 8_4:+2279338 Msa1307070:five_prime_UTR
TTATATGGCTAGGTACCCTG+AGG 0.745699 8_4:+2284719 Msa1307070:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGTTTGTTTATTTTTAAAA+GGG + chr8_4:2279067-2279086 Msa1307070:intron 10.0%
!!! TTTTTTTTTTTTGCTTTTTT+AGG + chr8_4:2281556-2281575 Msa1307070:five_prime_UTR 10.0%
!! ATAATGAATGATAATAATAT+GGG - chr8_4:2281825-2281844 None:intergenic 10.0%
!! TATAATGAATGATAATAATA+TGG - chr8_4:2281826-2281845 None:intergenic 10.0%
!! ATTTGAAAATTTCATATAAA+AGG - chr8_4:2284913-2284932 None:intergenic 10.0%
!!! GATGTTTGTTTATTTTTAAA+AGG + chr8_4:2279066-2279085 Msa1307070:intron 15.0%
!! AATTTATTCTGATACTTATA+TGG + chr8_4:2280238-2280257 Msa1307070:intron 15.0%
!! ATAGAATGAAGATTATATAT+AGG - chr8_4:2280401-2280420 None:intergenic 15.0%
!!! TATTTTCAAAGATTCTTTTA+TGG + chr8_4:2281419-2281438 Msa1307070:five_prime_UTR 15.0%
!!! AAATTGTTCAATGTTATTTT+AGG + chr8_4:2282346-2282365 Msa1307070:intron 15.0%
!!! TTTTTTCTTTTAGAAAGATA+TGG - chr8_4:2283310-2283329 None:intergenic 15.0%
!!! AAAAAATCATTACATTTTTC+TGG + chr8_4:2283325-2283344 Msa1307070:five_prime_UTR 15.0%
!! AATTCAAACTACTTTAAATA+AGG - chr8_4:2284017-2284036 None:intergenic 15.0%
!! ATTCAAATTAATGATTCAAA+AGG - chr8_4:2284565-2284584 None:intergenic 15.0%
!!! TTTGTTTTTCCAGATTTTTT+TGG + chr8_4:2278854-2278873 Msa1307070:intron 20.0%
!!! GTTTTTTCGTTTTTAAGTTA+TGG + chr8_4:2279028-2279047 Msa1307070:intron 20.0%
!!! GTTATGGTTTTATTTTGAAT+TGG + chr8_4:2279044-2279063 Msa1307070:intron 20.0%
!! AATCAACAAATTTCAGTAAA+TGG - chr8_4:2279199-2279218 None:intergenic 20.0%
!!! TTTTTATTATTTTCTTCTCG+AGG + chr8_4:2279558-2279577 Msa1307070:intron 20.0%
!! AACACGGTAAATAAAATTTA+AGG - chr8_4:2279631-2279650 None:intergenic 20.0%
!!! TTTTATTTACCGTGTTTTAT+AGG + chr8_4:2279635-2279654 Msa1307070:intron 20.0%
!! CAATACTTAATTTACCATAT+AGG - chr8_4:2280021-2280040 None:intergenic 20.0%
!!! GTGCAAAATTTTGATATTTT+GGG - chr8_4:2280272-2280291 None:intergenic 20.0%
!!! TTCTAAAGAATATCAAAAAG+TGG - chr8_4:2280562-2280581 None:intergenic 20.0%
!!! CTTACAACATTTTAACAATT+TGG - chr8_4:2280650-2280669 None:intergenic 20.0%
!! AACAACTAAAACTGATATTT+GGG - chr8_4:2280680-2280699 None:intergenic 20.0%
!! TAACAACTAAAACTGATATT+TGG - chr8_4:2280681-2280700 None:intergenic 20.0%
!! AATATGTAACAAAGCAAAAA+TGG - chr8_4:2281094-2281113 None:intergenic 20.0%
!!! TGATGCATTGTTATTTTTTA+TGG + chr8_4:2281453-2281472 Msa1307070:five_prime_UTR 20.0%
!!! CATTGTTATTTTTTATGGAA+AGG + chr8_4:2281458-2281477 Msa1307070:five_prime_UTR 20.0%
!! CTTCAAATCAAATAGAATAA+AGG - chr8_4:2281535-2281554 None:intergenic 20.0%
!!! ATTACTGATTTTAATTTTGC+AGG + chr8_4:2281879-2281898 Msa1307070:intron 20.0%
!!! TAATAAACCTTTACCATTTT+TGG - chr8_4:2282255-2282274 None:intergenic 20.0%
!! TTATGCTTATATATACGAAA+TGG + chr8_4:2282272-2282291 Msa1307070:intron 20.0%
!!! TTTAGGTTTATACACAAATT+TGG + chr8_4:2282363-2282382 Msa1307070:intron 20.0%
!!! ATTTTGATCTACTTACTATT+AGG + chr8_4:2282744-2282763 Msa1307070:intron 20.0%
!!! GTTAATTTTTTTATCTTCTC+TGG + chr8_4:2284337-2284356 Msa1307070:five_prime_UTR 20.0%
!! AGCATAATGAAATGATATAA+AGG + chr8_4:2284682-2284701 Msa1307070:five_prime_UTR 20.0%
!!! ATATGAAATTTTCAAATAGC+TGG + chr8_4:2284916-2284935 Msa1307070:five_prime_UTR 20.0%
!!! ATCATATATACTTTTCACAA+AGG - chr8_4:2284962-2284981 None:intergenic 20.0%
!!! ACATTTTCAGCTTTTAAAAA+TGG + chr8_4:2285234-2285253 Msa1307070:intron 20.0%
!! TAAAATTGTTCATAACTCAT+TGG + chr8_4:2285464-2285483 Msa1307070:intron 20.0%
!!! TTTAAAATGGAAGTGTTAAT+TGG - chr8_4:2285812-2285831 None:intergenic 20.0%
!! TTAAATACCTCGATTTAAAA+TGG - chr8_4:2285825-2285844 None:intergenic 20.0%
! CTGAAGAGAAAAATGAAAAT+TGG + chr8_4:2278644-2278663 Msa1307070:five_prime_UTR 25.0%
! GAAAAATGAAAATTGGAAGA+TGG + chr8_4:2278651-2278670 Msa1307070:five_prime_UTR 25.0%
! GTTTGATTAAACAAAAGATG+AGG - chr8_4:2278762-2278781 None:intergenic 25.0%
! GTTTAATCAAACATCATGAT+CGG + chr8_4:2278770-2278789 Msa1307070:intron 25.0%
! AATCTGGAAAAACAAAAACT+TGG - chr8_4:2278850-2278869 None:intergenic 25.0%
!!! TTTTCCAGATTTTTTTGGAT+CGG + chr8_4:2278859-2278878 Msa1307070:intron 25.0%
! ATTGTCATGACATAAATTTG+GGG - chr8_4:2278966-2278985 None:intergenic 25.0%
! GATTGTCATGACATAAATTT+GGG - chr8_4:2278967-2278986 None:intergenic 25.0%
! TGATTGTCATGACATAAATT+TGG - chr8_4:2278968-2278987 None:intergenic 25.0%
! AACGAAAAAACACAGTAAAA+AGG - chr8_4:2279019-2279038 None:intergenic 25.0%
!!! TGAAATTTGTTGATTGTTGT+AGG + chr8_4:2279204-2279223 Msa1307070:intron 25.0%
!!! AAGCTGTTTTTGTGTTTTAA+AGG + chr8_4:2279779-2279798 Msa1307070:intron 25.0%
! TCAGAGTCAAATTCAATAAT+TGG - chr8_4:2279983-2280002 None:intergenic 25.0%
!! TCTTTTGTTAACTTCCTATA+TGG + chr8_4:2280004-2280023 Msa1307070:intron 25.0%
!!! GAAATTATGGTTCTACATTT+TGG + chr8_4:2280109-2280128 Msa1307070:five_prime_UTR 25.0%
!!! GTATGATTCTATTTTGATTC+TGG + chr8_4:2280188-2280207 Msa1307070:intron 25.0%
!!! GGTGCAAAATTTTGATATTT+TGG - chr8_4:2280273-2280292 None:intergenic 25.0%
! AAACTTATCCTGTAATGTTT+AGG - chr8_4:2280294-2280313 None:intergenic 25.0%
! AGGATTGAAACTAAATGTTT+GGG - chr8_4:2280434-2280453 None:intergenic 25.0%
! AAGGATTGAAACTAAATGTT+TGG - chr8_4:2280435-2280454 None:intergenic 25.0%
! GAAATTTACCAAGAATTGAT+GGG - chr8_4:2280593-2280612 None:intergenic 25.0%
! AGAAATTTACCAAGAATTGA+TGG - chr8_4:2280594-2280613 None:intergenic 25.0%
!!! TTTTTAGGTTCAGTAGTTAA+AGG + chr8_4:2281571-2281590 Msa1307070:five_prime_UTR 25.0%
!!! TTTTAGGTTCAGTAGTTAAA+GGG + chr8_4:2281572-2281591 Msa1307070:five_prime_UTR 25.0%
! TGCTATCAACATATGATATA+AGG - chr8_4:2281703-2281722 None:intergenic 25.0%
!!! ATATCATATGTTGATAGCAA+AGG + chr8_4:2281704-2281723 Msa1307070:five_prime_UTR 25.0%
!! TAGCAAAGGTTATATGATTT+TGG + chr8_4:2281718-2281737 Msa1307070:five_prime_UTR 25.0%
! TGATAATAATATGGGAAACA+TGG - chr8_4:2281817-2281836 None:intergenic 25.0%
! TGTTTAGAAAATAGTGAAGT+AGG - chr8_4:2283156-2283175 None:intergenic 25.0%
!! AAATCATTACATTTTTCTGG+TGG + chr8_4:2283328-2283347 Msa1307070:five_prime_UTR 25.0%
! CTATAATTCATGTCTTACTA+TGG - chr8_4:2283431-2283450 None:intergenic 25.0%
!!! GTTGTTTTCATTTGGTATAT+TGG + chr8_4:2283636-2283655 Msa1307070:five_prime_UTR 25.0%
! GATGGTATAAAAAACTTGTA+AGG - chr8_4:2283903-2283922 None:intergenic 25.0%
! AACCTAAACTTACAAAAACA+TGG - chr8_4:2284200-2284219 None:intergenic 25.0%
! GAATTGTATGTTACATACTA+TGG - chr8_4:2284489-2284508 None:intergenic 25.0%
!! CATTAATTTGAATGAGTCAT+TGG + chr8_4:2284572-2284591 Msa1307070:five_prime_UTR 25.0%
! CATGACATGATTTGATTATT+TGG + chr8_4:2284605-2284624 Msa1307070:five_prime_UTR 25.0%
!! TTCTTGGTGTAGTAATTAAT+TGG + chr8_4:2284804-2284823 Msa1307070:five_prime_UTR 25.0%
! AATTAATTGGATACTCTTAG+AGG + chr8_4:2284817-2284836 Msa1307070:five_prime_UTR 25.0%
!! ATTTTCCATTGACATTATCT+TGG + chr8_4:2284885-2284904 Msa1307070:five_prime_UTR 25.0%
!!! ATTTTTTTCTTCCTTAGGTA+AGG - chr8_4:2285006-2285025 None:intergenic 25.0%
! TACCTAAGGAAGAAAAAAAT+TGG + chr8_4:2285006-2285025 Msa1307070:CDS 25.0%
!!! CATTTGTTTTTCATATCCTT+TGG + chr8_4:2285306-2285325 Msa1307070:intron 25.0%
!! TTTTTCATATCCTTTGGATT+AGG + chr8_4:2285312-2285331 Msa1307070:intron 25.0%
!! GAACAATTTTATATACCTGT+AGG - chr8_4:2285455-2285474 None:intergenic 25.0%
! GTATTCTCTATTATTACAGT+TGG + chr8_4:2285578-2285597 Msa1307070:CDS 25.0%
! AATACTTGACAACAACAATT+TGG - chr8_4:2285673-2285692 None:intergenic 25.0%
!!! GAAGTGTTAATTGGATTTTA+GGG - chr8_4:2285803-2285822 None:intergenic 25.0%
AATGAAATGAATGAAGACCA+AGG + chr8_4:2278730-2278749 Msa1307070:five_prime_UTR 30.0%
AAAAGATGAGGAAATTACCT+TGG - chr8_4:2278750-2278769 None:intergenic 30.0%
! GACAGTCATCAATTTTGAAT+AGG + chr8_4:2279115-2279134 Msa1307070:five_prime_UTR 30.0%
! AGTCATCAATTTTGAATAGG+AGG + chr8_4:2279118-2279137 Msa1307070:five_prime_UTR 30.0%
TCTAAAAATGGCTTCTACAT+TGG + chr8_4:2279390-2279409 Msa1307070:five_prime_UTR 30.0%
! TATGATGTTTTGCTTGATGA+TGG + chr8_4:2279602-2279621 Msa1307070:intron 30.0%
TATACTGCTCCTATAAAACA+CGG - chr8_4:2279647-2279666 None:intergenic 30.0%
TCTTAAACCATAACGTTTGA+AGG - chr8_4:2279684-2279703 None:intergenic 30.0%
TCAAACGTTATGGTTTAAGA+AGG + chr8_4:2279684-2279703 Msa1307070:intron 30.0%
TGGTTTAAGAAGGATTTCAT+TGG + chr8_4:2279694-2279713 Msa1307070:intron 30.0%
! TTTTGCAAAGAATCATCACA+CGG - chr8_4:2279849-2279868 None:intergenic 30.0%
!!! GTTGAGACATTGCTTTTTTA+TGG + chr8_4:2280139-2280158 Msa1307070:five_prime_UTR 30.0%
!!! AGACATTGCTTTTTTATGGA+TGG + chr8_4:2280143-2280162 Msa1307070:five_prime_UTR 30.0%
! ATTTTGCACCTAAACATTAC+AGG + chr8_4:2280283-2280302 Msa1307070:intron 30.0%
ATTGAAACTAAATGTTTGGG+AGG - chr8_4:2280431-2280450 None:intergenic 30.0%
! TTTTCTTTTCTTTTCACACC+AGG + chr8_4:2280501-2280520 Msa1307070:intron 30.0%
! TTTCTTTTCTTTTCACACCA+GGG + chr8_4:2280502-2280521 Msa1307070:intron 30.0%
AGAAATCTGCAAAAGAAACA+TGG - chr8_4:2280624-2280643 None:intergenic 30.0%
! GTTGTTAAGCTACTTGATTT+TGG + chr8_4:2280694-2280713 Msa1307070:intron 30.0%
!! TTAAGCTACTTGATTTTGGT+GGG + chr8_4:2280698-2280717 Msa1307070:intron 30.0%
TAAAATGCATTGCAAGTGTT+TGG + chr8_4:2280757-2280776 Msa1307070:intron 30.0%
! AAACACCAGATTTTTCTCAT+GGG - chr8_4:2280790-2280809 None:intergenic 30.0%
! TAAACACCAGATTTTTCTCA+TGG - chr8_4:2280791-2280810 None:intergenic 30.0%
!!! AGCATCACATGTTTTTAGTA+AGG + chr8_4:2280810-2280829 Msa1307070:intron 30.0%
ATCAAAATTGTATCCTGATG+TGG - chr8_4:2280922-2280941 None:intergenic 30.0%
TCTCAAAATTCCTGTAGAAA+AGG + chr8_4:2281018-2281037 Msa1307070:intron 30.0%
!! TGCATTGGATAATTTGCTTT+AGG + chr8_4:2281051-2281070 Msa1307070:intron 30.0%
TGGGTTAACATATTTCTTTG+TGG + chr8_4:2281175-2281194 Msa1307070:five_prime_UTR 30.0%
! ATGATGGTCTTTTATGTAAG+TGG + chr8_4:2281306-2281325 Msa1307070:intron 30.0%
TTGAATTATGGGACTGATAT+TGG + chr8_4:2281639-2281658 Msa1307070:five_prime_UTR 30.0%
! CAAAGGTTATATGATTTTGG+AGG + chr8_4:2281721-2281740 Msa1307070:five_prime_UTR 30.0%
!!! GATTTTAATTTTGCAGGTGT+TGG + chr8_4:2281885-2281904 Msa1307070:intron 30.0%
AAATTCTTTGTCAGAAACCT+TGG - chr8_4:2281938-2281957 None:intergenic 30.0%
AAAAGCTGAGGTAATGTTTA+TGG + chr8_4:2282038-2282057 Msa1307070:intron 30.0%
!! GATTTTGTTTGGCACATATA+TGG - chr8_4:2282137-2282156 None:intergenic 30.0%
ATATGTGCCAAACAAAATCA+TGG + chr8_4:2282138-2282157 Msa1307070:intron 30.0%
! GTAGATACCATGATTTTGTT+TGG - chr8_4:2282148-2282167 None:intergenic 30.0%
AATTGCAAATGTTTGATGCT+TGG - chr8_4:2282221-2282240 None:intergenic 30.0%
ATCAAACATTTGCAATTCGA+CGG + chr8_4:2282224-2282243 Msa1307070:intron 30.0%
!! TTTGTTTCTATAATATCCCC+AGG - chr8_4:2282329-2282348 None:intergenic 30.0%
!! TACTCCTTTTTCGTTCAAAT+TGG + chr8_4:2282420-2282439 Msa1307070:intron 30.0%
ACTACCAATTTGAACGAAAA+AGG - chr8_4:2282427-2282446 None:intergenic 30.0%
GATATGATTCATTACTCTCT+CGG + chr8_4:2282620-2282639 Msa1307070:intron 30.0%
AAAGAAACTGCTAAAAGTCT+TGG + chr8_4:2282711-2282730 Msa1307070:intron 30.0%
AACACAAAACAGTTAGTGTT+GGG - chr8_4:2282775-2282794 None:intergenic 30.0%
TAACACAAAACAGTTAGTGT+TGG - chr8_4:2282776-2282795 None:intergenic 30.0%
! AGAAAGAGTATGTTAGTAGA+AGG - chr8_4:2282963-2282982 None:intergenic 30.0%
TCTGTTACTATTATGTCAAG+AGG + chr8_4:2283095-2283114 Msa1307070:five_prime_UTR 30.0%
! CCTTAATGTGTCATTAAATG+TGG - chr8_4:2283234-2283253 None:intergenic 30.0%
CCACATTTAATGACACATTA+AGG + chr8_4:2283231-2283250 Msa1307070:five_prime_UTR 30.0%
TCTAACAGTATACAATGCAT+TGG - chr8_4:2283458-2283477 None:intergenic 30.0%
!!! CAGAAGTTGTTGTTTTCATT+TGG + chr8_4:2283628-2283647 Msa1307070:five_prime_UTR 30.0%
TGTATTAGTTGTTCTGATTC+AGG + chr8_4:2283716-2283735 Msa1307070:five_prime_UTR 30.0%
!! TTGGTTTGTGATTTGAAACA+CGG - chr8_4:2283790-2283809 None:intergenic 30.0%
GGTATAAAAAACTTGTAAGG+CGG - chr8_4:2283900-2283919 None:intergenic 30.0%
CACAAGATGAAATATCAAAC+AGG - chr8_4:2283942-2283961 None:intergenic 30.0%
CTTTATCACAAGATGTATTC+TGG + chr8_4:2284080-2284099 Msa1307070:five_prime_UTR 30.0%
ACTAACTCTTCCTATGTTAT+AGG + chr8_4:2284258-2284277 Msa1307070:five_prime_UTR 30.0%
AGACAAATTCAAATGAGAAC+CGG - chr8_4:2284304-2284323 None:intergenic 30.0%
GCTATCTTGAATCTGTTATA+AGG + chr8_4:2284399-2284418 Msa1307070:five_prime_UTR 30.0%
TTGCAGTAAAAGTCTATCAA+TGG - chr8_4:2284511-2284530 None:intergenic 30.0%
GCATTGAACTCACATTTATA+TGG + chr8_4:2284704-2284723 Msa1307070:five_prime_UTR 30.0%
CACATCGATAATATCATTCT+TGG + chr8_4:2284788-2284807 Msa1307070:five_prime_UTR 30.0%
TCTGTGAACATTAAGAATTC+AGG + chr8_4:2284853-2284872 Msa1307070:five_prime_UTR 30.0%
TTCAAAATGAACCTTACCTA+AGG + chr8_4:2284992-2285011 Msa1307070:CDS 30.0%
!! ATATTGAGTACTGAAGATCA+TGG + chr8_4:2285042-2285061 Msa1307070:CDS 30.0%
!! AAACTGAGAAGAGGTTTTAT+TGG - chr8_4:2285088-2285107 None:intergenic 30.0%
AATATGGAAAAACTGAGAAG+AGG - chr8_4:2285097-2285116 None:intergenic 30.0%
TTAGAGGAATTATTAGGAAC+AGG - chr8_4:2285123-2285142 None:intergenic 30.0%
CTCTTCTTAGAGGAATTATT+AGG - chr8_4:2285129-2285148 None:intergenic 30.0%
ATTTCTACTACTCTTCTTAG+AGG - chr8_4:2285139-2285158 None:intergenic 30.0%
TCTAAGAAGAGTAGTAGAAA+TGG + chr8_4:2285138-2285157 Msa1307070:CDS 30.0%
AGAAATGGACATTCACAAAA+TGG + chr8_4:2285153-2285172 Msa1307070:CDS 30.0%
GAAATGGACATTCACAAAAT+GGG + chr8_4:2285154-2285173 Msa1307070:CDS 30.0%
AAATGGACATTCACAAAATG+GGG + chr8_4:2285155-2285174 Msa1307070:CDS 30.0%
! TTGATCTTTCGACATTTTTC+AGG - chr8_4:2285203-2285222 None:intergenic 30.0%
TTCTCTATTATTACAGTTGG+AGG + chr8_4:2285581-2285600 Msa1307070:CDS 30.0%
TCTCTATTATTACAGTTGGA+GGG + chr8_4:2285582-2285601 Msa1307070:CDS 30.0%
! GTTGTCAAGTATTCTCTTTT+AGG + chr8_4:2285680-2285699 Msa1307070:CDS 30.0%
!!! GGAAGTGTTAATTGGATTTT+AGG - chr8_4:2285804-2285823 None:intergenic 30.0%
! AACACTTCCATTTTAAATCG+AGG + chr8_4:2285815-2285834 Msa1307070:intron 30.0%
TTCTCAGGATTTGATAAGTT+AGG - chr8_4:2285900-2285919 None:intergenic 30.0%
TTCTGATTCTAAATCCAGAG+CGG - chr8_4:2278926-2278945 None:intergenic 35.0%
! ATTCATCATGCTTTGTTGAG+TGG + chr8_4:2279322-2279341 Msa1307070:five_prime_UTR 35.0%
TCTACATTGGAAATGTGATG+TGG + chr8_4:2279403-2279422 Msa1307070:five_prime_UTR 35.0%
!!! TCGAGGTTTGTTTTATGTGA+AGG + chr8_4:2279575-2279594 Msa1307070:intron 35.0%
! TTTTCGACCTTCAAACGTTA+TGG + chr8_4:2279674-2279693 Msa1307070:intron 35.0%
CAAAACAGAGAGACATTTCA+TGG + chr8_4:2279864-2279883 Msa1307070:intron 35.0%
GTCAGAGTTGCTTGAAATTA+TGG + chr8_4:2280096-2280115 Msa1307070:five_prime_UTR 35.0%
AATCCTTTGCGTAGTTAGAA+TGG + chr8_4:2280448-2280467 Msa1307070:intron 35.0%
ATCCTTTGCGTAGTTAGAAT+GGG + chr8_4:2280449-2280468 Msa1307070:intron 35.0%
AATGCAAGAATGTATTTCCC+TGG - chr8_4:2280522-2280541 None:intergenic 35.0%
ATACATTCTTGCATTCTTGC+TGG + chr8_4:2280527-2280546 Msa1307070:five_prime_UTR 35.0%
! GTTAAGCTACTTGATTTTGG+TGG + chr8_4:2280697-2280716 Msa1307070:intron 35.0%
!! TTTTGGTGGGTGGATATTTT+AGG + chr8_4:2280711-2280730 Msa1307070:intron 35.0%
AAATGCCCATGAGAAAAATC+TGG + chr8_4:2280782-2280801 Msa1307070:intron 35.0%
TTTAAATGACAAGCCACATC+AGG + chr8_4:2280906-2280925 Msa1307070:intron 35.0%
GAGAAAGAACAACATGTATG+AGG - chr8_4:2281002-2281021 None:intergenic 35.0%
GCAAATTATCCAATGCATCA+TGG - chr8_4:2281048-2281067 None:intergenic 35.0%
!! GGATAATTTGCTTTAGGTGT+CGG + chr8_4:2281057-2281076 Msa1307070:intron 35.0%
AGAACTGCACACATATAACA+AGG + chr8_4:2281121-2281140 Msa1307070:intron 35.0%
GAACTGCACACATATAACAA+GGG + chr8_4:2281122-2281141 Msa1307070:intron 35.0%
! CATATAACAAGGGCCTATTT+TGG + chr8_4:2281132-2281151 Msa1307070:five_prime_UTR 35.0%
TTGTGGCAAAAGTTTCATTG+TGG + chr8_4:2281192-2281211 Msa1307070:five_prime_UTR 35.0%
GTCATGAAATTTGATGCATG+TGG + chr8_4:2281328-2281347 Msa1307070:intron 35.0%
ACTTCCTGCAAGTAATAGAA+AGG - chr8_4:2281390-2281409 None:intergenic 35.0%
AATGCTCAAGGGTCAAATAT+GGG - chr8_4:2281500-2281519 None:intergenic 35.0%
TAATGCTCAAGGGTCAAATA+TGG - chr8_4:2281501-2281520 None:intergenic 35.0%
ATATTTGACCCTTGAGCATT+AGG + chr8_4:2281500-2281519 Msa1307070:five_prime_UTR 35.0%
AAGAGAAACCTAATGCTCAA+GGG - chr8_4:2281511-2281530 None:intergenic 35.0%
AAAGAGAAACCTAATGCTCA+AGG - chr8_4:2281512-2281531 None:intergenic 35.0%
TTTCAAGCTGTTGTTGTAGT+CGG + chr8_4:2281758-2281777 Msa1307070:five_prime_UTR 35.0%
TGACTACAAAGTTGCTTATG+AGG + chr8_4:2281962-2281981 Msa1307070:five_prime_UTR 35.0%
!! TACTTTTAGCTATACTCCTG+TGG + chr8_4:2282165-2282184 Msa1307070:intron 35.0%
!! ACTTTTAGCTATACTCCTGT+GGG + chr8_4:2282166-2282185 Msa1307070:intron 35.0%
GGATTTGCCAAAAATGGTAA+AGG + chr8_4:2282245-2282264 Msa1307070:intron 35.0%
TTACCAGAGATATACTTCCT+GGG + chr8_4:2282309-2282328 Msa1307070:intron 35.0%
AAGACAATAATGAAACGGGA+AGG - chr8_4:2282462-2282481 None:intergenic 35.0%
CTGCAAGACAATAATGAAAC+GGG - chr8_4:2282466-2282485 None:intergenic 35.0%
CCTGCAAGACAATAATGAAA+CGG - chr8_4:2282467-2282486 None:intergenic 35.0%
! TTGCAGGTTTTCTATTACAC+TGG + chr8_4:2282480-2282499 Msa1307070:intron 35.0%
ACACAAAACAGTTAGTGTTG+GGG - chr8_4:2282774-2282793 None:intergenic 35.0%
!!! TTGTTTTTGCATCGACACTT+TGG + chr8_4:2282901-2282920 Msa1307070:intron 35.0%
AATCTGCTAAGATGAATGTC+TGG - chr8_4:2283075-2283094 None:intergenic 35.0%
TTATGAGTCATCCAGATGAT+GGG + chr8_4:2283399-2283418 Msa1307070:five_prime_UTR 35.0%
!! TTTTCTGAAAGCCATTGTTG+TGG + chr8_4:2283556-2283575 Msa1307070:five_prime_UTR 35.0%
CTTCTGTTAAACAGAAACAG+AGG - chr8_4:2283614-2283633 None:intergenic 35.0%
GTGTTTCAAATCACAAACCA+AGG + chr8_4:2283789-2283808 Msa1307070:five_prime_UTR 35.0%
!! GTTTTTCTAGAAGAGACTGT+TGG - chr8_4:2283872-2283891 None:intergenic 35.0%
! AAAAACTTGTAAGGCGGTTT+TGG - chr8_4:2283894-2283913 None:intergenic 35.0%
!!! GTTTTTTATACCATCAGCTG+AGG + chr8_4:2283908-2283927 Msa1307070:five_prime_UTR 35.0%
!! CGCCATGTTTTTGTAAGTTT+AGG + chr8_4:2284195-2284214 Msa1307070:five_prime_UTR 35.0%
AATTGCCATGTTATGAAGTC+TGG + chr8_4:2284232-2284251 Msa1307070:five_prime_UTR 35.0%
GTAAACCAGACTTCATAACA+TGG - chr8_4:2284240-2284259 None:intergenic 35.0%
TTCCTATGTTATAGGCTCAA+AGG + chr8_4:2284266-2284285 Msa1307070:five_prime_UTR 35.0%
TCCTATGTTATAGGCTCAAA+GGG + chr8_4:2284267-2284286 Msa1307070:five_prime_UTR 35.0%
TTCTCTGGTGTTTGTAAGAT+GGG + chr8_4:2284352-2284371 Msa1307070:five_prime_UTR 35.0%
TTATAAGGTGCATGACTCAT+TGG + chr8_4:2284414-2284433 Msa1307070:five_prime_UTR 35.0%
GAACTCACATTTATATGGCT+AGG + chr8_4:2284709-2284728 Msa1307070:five_prime_UTR 35.0%
AGGTACCAAGATAATGTCAA+TGG - chr8_4:2284893-2284912 None:intergenic 35.0%
!!! CGCCAATTTTTTTCTTCCTT+AGG - chr8_4:2285011-2285030 None:intergenic 35.0%
TATTAGGAACAGGCAGAATA+TGG - chr8_4:2285113-2285132 None:intergenic 35.0%
! ATATCCGTATCAGTTTTCTC+AGG + chr8_4:2285269-2285288 Msa1307070:intron 35.0%
! CTTTGGATTAGGTGAAGATT+CGG + chr8_4:2285323-2285342 Msa1307070:intron 35.0%
AAGAAGAAGGTTTGAAAGGA+TGG - chr8_4:2285708-2285727 None:intergenic 35.0%
AGTGGAGCAAAAATATGACA+GGG + chr8_4:2285772-2285791 Msa1307070:CDS 35.0%
! AATCGAGGTATTTAACGAAG+TGG + chr8_4:2285830-2285849 Msa1307070:intron 35.0%
CTTATCAAATCCTGAGAACA+TGG + chr8_4:2285902-2285921 Msa1307070:CDS 35.0%
CTGGAAGCAGAAAAGGAAAA+CGG + chr8_4:2278621-2278640 Msa1307070:five_prime_UTR 40.0%
TGGTGAAAACGAAAGAGAGA+CGG + chr8_4:2278671-2278690 Msa1307070:five_prime_UTR 40.0%
!! AGAAGAGGAAAGTGTTGTGT+TGG + chr8_4:2278698-2278717 Msa1307070:five_prime_UTR 40.0%
TGCTCCGATCCAAAAAAATC+TGG - chr8_4:2278866-2278885 None:intergenic 40.0%
! GCTCTGGATTTAGAATCAGA+AGG + chr8_4:2278925-2278944 Msa1307070:five_prime_UTR 40.0%
!! CCATTTTTAGACCAGTTGGA+GGG - chr8_4:2279381-2279400 None:intergenic 40.0%
!!! GAAGCCATTTTTAGACCAGT+TGG - chr8_4:2279385-2279404 None:intergenic 40.0%
ATTGGAAATGTGATGTGGAG+TGG + chr8_4:2279408-2279427 Msa1307070:five_prime_UTR 40.0%
GCTAGCAGACAATTGAAATG+AGG + chr8_4:2279514-2279533 Msa1307070:five_prime_UTR 40.0%
AGAATCATCACACGGAAGTT+AGG - chr8_4:2279841-2279860 None:intergenic 40.0%
GCTATAGATTCAGCCAAAGT+GGG - chr8_4:2279916-2279935 None:intergenic 40.0%
AGCTATAGATTCAGCCAAAG+TGG - chr8_4:2279917-2279936 None:intergenic 40.0%
! TGGCTGAATCTATAGCTTTG+AGG + chr8_4:2279920-2279939 Msa1307070:five_prime_UTR 40.0%
!! CTGAATCTATAGCTTTGAGG+TGG + chr8_4:2279923-2279942 Msa1307070:five_prime_UTR 40.0%
!! ATTGCCTTTAGGTACTGACT+TGG + chr8_4:2279954-2279973 Msa1307070:intron 40.0%
AGAATCATACCTGTCTCAAG+TGG - chr8_4:2280178-2280197 None:intergenic 40.0%
AACCCATTCTAACTACGCAA+AGG - chr8_4:2280454-2280473 None:intergenic 40.0%
!! GTTAGAATGGGTTGTTGAAC+TGG + chr8_4:2280461-2280480 Msa1307070:intron 40.0%
!! ACCAAGAATTGATGGGTTTG+AGG - chr8_4:2280586-2280605 None:intergenic 40.0%
TCTACTTCTTTACACCTGAC+TGG + chr8_4:2280872-2280891 Msa1307070:intron 40.0%
TTCTTTACACCTGACTGGAT+AGG + chr8_4:2280877-2280896 Msa1307070:intron 40.0%
AAACCAAATCCTATCCAGTC+AGG - chr8_4:2280889-2280908 None:intergenic 40.0%
AACATGTATGAGGTTCATGC+AGG - chr8_4:2280992-2281011 None:intergenic 40.0%
! TCATGGAACTCCTTTTCTAC+AGG - chr8_4:2281031-2281050 None:intergenic 40.0%
AAAGGAGTTCCATGATGCAT+TGG + chr8_4:2281036-2281055 Msa1307070:intron 40.0%
!! ATAACAAGGGCCTATTTTGG+AGG + chr8_4:2281135-2281154 Msa1307070:five_prime_UTR 40.0%
GATGAAGAAGACTGAGATGA+TGG + chr8_4:2281290-2281309 Msa1307070:five_prime_UTR 40.0%
CTTGCCTTTCTATTACTTGC+AGG + chr8_4:2281383-2281402 Msa1307070:intron 40.0%
TATGAGGAAATTGCTGAAGC+TGG + chr8_4:2281978-2281997 Msa1307070:five_prime_UTR 40.0%
!! CTTTTAGCTATACTCCTGTG+GGG + chr8_4:2282167-2282186 Msa1307070:intron 40.0%
TGCAAATGTTTGATGCTTGG+AGG - chr8_4:2282218-2282237 None:intergenic 40.0%
! TTCGACGGATTTGCCAAAAA+TGG + chr8_4:2282239-2282258 Msa1307070:intron 40.0%
CTTACCAGAGATATACTTCC+TGG + chr8_4:2282308-2282327 Msa1307070:intron 40.0%
TACCAGAGATATACTTCCTG+GGG + chr8_4:2282310-2282329 Msa1307070:intron 40.0%
TGAACGAAAAAGGAGTAGCA+CGG - chr8_4:2282417-2282436 None:intergenic 40.0%
CCGTTTCATTATTGTCTTGC+AGG + chr8_4:2282464-2282483 Msa1307070:intron 40.0%
!!! CTTTGGTTTTGTAGCTTGCT+TGG + chr8_4:2282918-2282937 Msa1307070:intron 40.0%
AACATACTCTTTCTTGCACC+AGG + chr8_4:2282969-2282988 Msa1307070:intron 40.0%
AGATACCCATGGACATTTGT+TGG + chr8_4:2282996-2283015 Msa1307070:five_prime_UTR 40.0%
! TCTGAGATAAGAACCATCGA+CGG - chr8_4:2283046-2283065 None:intergenic 40.0%
GTACAACCCTGCATTTAATC+AGG + chr8_4:2283130-2283149 Msa1307070:five_prime_UTR 40.0%
AGTAGGCCTGATTAAATGCA+GGG - chr8_4:2283139-2283158 None:intergenic 40.0%
AAGTAGGCCTGATTAAATGC+AGG - chr8_4:2283140-2283159 None:intergenic 40.0%
TTATGACTCTAATTCGACCG+CGG + chr8_4:2283255-2283274 Msa1307070:five_prime_UTR 40.0%
CTTATGAGTCATCCAGATGA+TGG + chr8_4:2283398-2283417 Msa1307070:five_prime_UTR 40.0%
AGGAACACAGAATTTGTGCT+TGG - chr8_4:2283485-2283504 None:intergenic 40.0%
AAACTGTAACAGCTACGACA+AGG - chr8_4:2283524-2283543 None:intergenic 40.0%
CTAAAAACCCACTGTAGAAG+AGG - chr8_4:2283667-2283686 None:intergenic 40.0%
!!! TCTACAGTGGGTTTTTAGCA+AGG + chr8_4:2283669-2283688 Msa1307070:five_prime_UTR 40.0%
!!! CTACAGTGGGTTTTTAGCAA+GGG + chr8_4:2283670-2283689 Msa1307070:five_prime_UTR 40.0%
!!! TACAGTGGGTTTTTAGCAAG+GGG + chr8_4:2283671-2283690 Msa1307070:five_prime_UTR 40.0%
AAAAGTCGTCAGTTTCACCT+TGG - chr8_4:2283809-2283828 None:intergenic 40.0%
TCCCTTTGAGCCTATAACAT+AGG - chr8_4:2284271-2284290 None:intergenic 40.0%
TCAAAGGGATGAGATGATAC+CGG + chr8_4:2284282-2284301 Msa1307070:five_prime_UTR 40.0%
CTTCTCTGGTGTTTGTAAGA+TGG + chr8_4:2284351-2284370 Msa1307070:five_prime_UTR 40.0%
!! AAAGTGCTGCGCTATTAAAG+AGG + chr8_4:2284636-2284655 Msa1307070:five_prime_UTR 40.0%
TGAGAAAAAACTGCACCTCA+GGG - chr8_4:2284737-2284756 None:intergenic 40.0%
ATGAGAAAAAACTGCACCTC+AGG - chr8_4:2284738-2284757 None:intergenic 40.0%
!!! TGAGGTGCAGTTTTTTCTCA+TGG + chr8_4:2284737-2284756 Msa1307070:five_prime_UTR 40.0%
GAATTATGTCATGCCAAGCT+TGG - chr8_4:2284769-2284788 None:intergenic 40.0%
AGTGCCTGAGAAAACTGATA+CGG - chr8_4:2285276-2285295 None:intergenic 40.0%
CGAATCTTCACCTAATCCAA+AGG - chr8_4:2285325-2285344 None:intergenic 40.0%
!!! GCACTGATTTTGTACACTAG+CGG + chr8_4:2285345-2285364 Msa1307070:CDS 40.0%
!!! CACTGATTTTGTACACTAGC+GGG + chr8_4:2285346-2285365 Msa1307070:CDS 40.0%
AGACAAATTGCCTTCTTCAC+TGG + chr8_4:2285428-2285447 Msa1307070:CDS 40.0%
GGCTTCTTAATGCAACATGT+GGG + chr8_4:2285603-2285622 Msa1307070:CDS 40.0%
GCACAAGAAGAAGGTTTGAA+AGG - chr8_4:2285712-2285731 None:intergenic 40.0%
TCAAACCTTCTTCTTGTGCT+TGG + chr8_4:2285713-2285732 Msa1307070:CDS 40.0%
AAGTTCCAAGCACAAGAAGA+AGG - chr8_4:2285721-2285740 None:intergenic 40.0%
!! CATATTTTTGCTCCACTCCA+AGG - chr8_4:2285769-2285788 None:intergenic 40.0%
GAGTGGAGCAAAAATATGAC+AGG + chr8_4:2285771-2285790 Msa1307070:CDS 40.0%
GAAATCTATCAGCGTTCCTA+CGG + chr8_4:2285944-2285963 Msa1307070:CDS 40.0%
!!! CTCCTTTCCTCGTTTTTTGC+CGG - chr8_4:2278596-2278615 None:intergenic 45.0%
AGAAACGCTGGAAGCAGAAA+AGG + chr8_4:2278614-2278633 Msa1307070:five_prime_UTR 45.0%
TTGGATCGGAGCAACTTCAA+CGG + chr8_4:2278873-2278892 Msa1307070:five_prime_UTR 45.0%
! TGAGTGGATTCCCAACAATG+TGG + chr8_4:2279338-2279357 Msa1307070:five_prime_UTR 45.0%
AGACAGAGGACCACATTGTT+GGG - chr8_4:2279351-2279370 None:intergenic 45.0%
! CCCTCCAACTGGTCTAAAAA+TGG + chr8_4:2279378-2279397 Msa1307070:five_prime_UTR 45.0%
!!! GCCATTTTTAGACCAGTTGG+AGG - chr8_4:2279382-2279401 None:intergenic 45.0%
CAATAGCGCAAATACAGTGC+AGG - chr8_4:2279471-2279490 None:intergenic 45.0%
!! TGTCTGCTAGCACTGATGAA+GGG - chr8_4:2279505-2279524 None:intergenic 45.0%
!! TTGTCTGCTAGCACTGATGA+AGG - chr8_4:2279506-2279525 None:intergenic 45.0%
TGGCGACTTCAATTGCCTTT+AGG + chr8_4:2279943-2279962 Msa1307070:five_prime_UTR 45.0%
GAGTCCAAGTCAGTACCTAA+AGG - chr8_4:2279961-2279980 None:intergenic 45.0%
! ATGATCTTGCCACTTGAGAC+AGG + chr8_4:2280166-2280185 Msa1307070:five_prime_UTR 45.0%
GCCTCAAACCCATCAATTCT+TGG + chr8_4:2280582-2280601 Msa1307070:five_prime_UTR 45.0%
!! AGCTACTTGATTTTGGTGGG+TGG + chr8_4:2280701-2280720 Msa1307070:intron 45.0%
!! TGGTGGGTGGATATTTTAGG+AGG + chr8_4:2280714-2280733 Msa1307070:intron 45.0%
!! GGTGGGTGGATATTTTAGGA+GGG + chr8_4:2280715-2280734 Msa1307070:intron 45.0%
AGGAGGGCTGGAATTAGTAA+TGG + chr8_4:2280731-2280750 Msa1307070:intron 45.0%
GGAGGGCTGGAATTAGTAAT+GGG + chr8_4:2280732-2280751 Msa1307070:intron 45.0%
GAGGGCTGGAATTAGTAATG+GGG + chr8_4:2280733-2280752 Msa1307070:intron 45.0%
ACACCTGACTGGATAGGATT+TGG + chr8_4:2280883-2280902 Msa1307070:intron 45.0%
GCACCTTCATCCTCCAAAAT+AGG - chr8_4:2281148-2281167 None:intergenic 45.0%
GGGACTGATATTGGAACTGA+CGG + chr8_4:2281648-2281667 Msa1307070:five_prime_UTR 45.0%
GGACTGATATTGGAACTGAC+GGG + chr8_4:2281649-2281668 Msa1307070:five_prime_UTR 45.0%
GACTGATATTGGAACTGACG+GGG + chr8_4:2281650-2281669 Msa1307070:five_prime_UTR 45.0%
TGTTGTTGTAGTCGGATCAG+AGG + chr8_4:2281766-2281785 Msa1307070:five_prime_UTR 45.0%
!!! AATTTTGCAGGTGTTGGCCT+TGG + chr8_4:2281891-2281910 Msa1307070:intron 45.0%
AGGAAATTGCTGAAGCTGGA+TGG + chr8_4:2281982-2282001 Msa1307070:five_prime_UTR 45.0%
GCTGAAGCTGGATGGTATTA+AGG + chr8_4:2281990-2282009 Msa1307070:five_prime_UTR 45.0%
CTGGATGGTATTAAGGCTGA+AGG + chr8_4:2281997-2282016 Msa1307070:five_prime_UTR 45.0%
TTAAGGCTGAAGGTGAAGCT+AGG + chr8_4:2282007-2282026 Msa1307070:five_prime_UTR 45.0%
TAGGTTGCAGAGAAAAGCTG+AGG + chr8_4:2282026-2282045 Msa1307070:five_prime_UTR 45.0%
! ATCCCCAGGAAGTATATCTC+TGG - chr8_4:2282315-2282334 None:intergenic 45.0%
! TGCATTTCAAGTCTGTCTGC+AGG + chr8_4:2282543-2282562 Msa1307070:five_prime_UTR 45.0%
TTCAAGTCTGTCTGCAGGTT+TGG + chr8_4:2282548-2282567 Msa1307070:five_prime_UTR 45.0%
CAACTCGGAAAGACAAGCAT+GGG - chr8_4:2282807-2282826 None:intergenic 45.0%
ACAACTCGGAAAGACAAGCA+TGG - chr8_4:2282808-2282827 None:intergenic 45.0%
TGCTTGTCTTTCCGAGTTGT+TGG + chr8_4:2282808-2282827 Msa1307070:intron 45.0%
GCTTGTCTTTCCGAGTTGTT+GGG + chr8_4:2282809-2282828 Msa1307070:intron 45.0%
!! CTTTGAGTTGCCCAACAACT+CGG - chr8_4:2282822-2282841 None:intergenic 45.0%
GAGTTGTTGGGCAACTCAAA+GGG + chr8_4:2282821-2282840 Msa1307070:intron 45.0%
GGCAACCAACAAATGTCCAT+GGG - chr8_4:2283004-2283023 None:intergenic 45.0%
AGGCAACCAACAAATGTCCA+TGG - chr8_4:2283005-2283024 None:intergenic 45.0%
! TGGACATTTGTTGGTTGCCT+TGG + chr8_4:2283005-2283024 Msa1307070:five_prime_UTR 45.0%
! GGACATTTGTTGGTTGCCTT+GGG + chr8_4:2283006-2283025 Msa1307070:five_prime_UTR 45.0%
! GACATTTGTTGGTTGCCTTG+GGG + chr8_4:2283007-2283026 Msa1307070:five_prime_UTR 45.0%
! ACATTTGTTGGTTGCCTTGG+GGG + chr8_4:2283008-2283027 Msa1307070:five_prime_UTR 45.0%
!! TTTTCTGGTGGAGAACATCC+TGG + chr8_4:2283340-2283359 Msa1307070:five_prime_UTR 45.0%
GTGGAGAACATCCTGGTTAT+TGG + chr8_4:2283347-2283366 Msa1307070:five_prime_UTR 45.0%
AGCGACTATGTCCAATAACC+AGG - chr8_4:2283361-2283380 None:intergenic 45.0%
GTTATTGGACATAGTCGCTG+TGG + chr8_4:2283362-2283381 Msa1307070:five_prime_UTR 45.0%
TCTGTGTTCCTGTTCACGTT+TGG + chr8_4:2283494-2283513 Msa1307070:five_prime_UTR 45.0%
! AAGGTACTCCAAACGTGAAC+AGG - chr8_4:2283505-2283524 None:intergenic 45.0%
AGCACAAAGAGCCACAACAA+TGG - chr8_4:2283570-2283589 None:intergenic 45.0%
GAAACAGAGGAAACTCTGCA+AGG - chr8_4:2283601-2283620 None:intergenic 45.0%
!! GGGCTTTGAGTATCATGCTT+GGG + chr8_4:2283691-2283710 Msa1307070:five_prime_UTR 45.0%
!! GGCTTTGAGTATCATGCTTG+GGG + chr8_4:2283692-2283711 Msa1307070:five_prime_UTR 45.0%
GGTAGTTTATCCTCAGCTGA+TGG - chr8_4:2283921-2283940 None:intergenic 45.0%
TTATATGGCTAGGTACCCTG+AGG + chr8_4:2284719-2284738 Msa1307070:five_prime_UTR 45.0%
CTCATGGCTAATACCAAGCT+TGG + chr8_4:2284753-2284772 Msa1307070:five_prime_UTR 45.0%
GGGCTTCTTAATGCAACATG+TGG + chr8_4:2285602-2285621 Msa1307070:CDS 45.0%
CTTGGAACTTCCCTACTTTG+TGG + chr8_4:2285731-2285750 Msa1307070:CDS 45.0%
TGCAATGCCACCACAAAGTA+GGG - chr8_4:2285744-2285763 None:intergenic 45.0%
TTGCAATGCCACCACAAAGT+AGG - chr8_4:2285745-2285764 None:intergenic 45.0%
ACGAAGTGGTTGATCTGAAG+TGG + chr8_4:2285844-2285863 Msa1307070:intron 45.0%
GCAGAAACATCCATGTTCTC+AGG - chr8_4:2285915-2285934 None:intergenic 45.0%
!!! TTTTTTTTTTTTTTGAATTA+TGG + chr8_4:2281627-2281646 Msa1307070:five_prime_UTR 5.0%
!!! TTTTTTTTTTTTTGAATTAT+GGG + chr8_4:2281628-2281647 Msa1307070:five_prime_UTR 5.0%
ACGGGAACGAGAGAGAAAGA+AGG + chr8_4:2278564-2278583 Msa1307070:five_prime_UTR 50.0%
GAGAGAAAGAAGGAAGTCGC+CGG + chr8_4:2278574-2278593 Msa1307070:five_prime_UTR 50.0%
AACGAGGAAAGGAGAAACGC+TGG + chr8_4:2278602-2278621 Msa1307070:five_prime_UTR 50.0%
!! GAAAACGATTTCTGGTGCGC+CGG - chr8_4:2278902-2278921 None:intergenic 50.0%
AGAGCGGCGAAAACGATTTC+TGG - chr8_4:2278910-2278929 None:intergenic 50.0%
! AGAAATCGTTTTCGCCGCTC+TGG + chr8_4:2278909-2278928 Msa1307070:five_prime_UTR 50.0%
CAGACAGAGGACCACATTGT+TGG - chr8_4:2279352-2279371 None:intergenic 50.0%
TGGAGGGATATCACAGACAG+AGG - chr8_4:2279365-2279384 None:intergenic 50.0%
GTCTGTGATATCCCTCCAAC+TGG + chr8_4:2279367-2279386 Msa1307070:five_prime_UTR 50.0%
TCAGCCAAAGTGGGAAAGTG+AGG - chr8_4:2279907-2279926 None:intergenic 50.0%
!! GGTGGATATTTTAGGAGGGC+TGG + chr8_4:2280719-2280738 Msa1307070:intron 50.0%
!! GGGCCTATTTTGGAGGATGA+AGG + chr8_4:2281142-2281161 Msa1307070:five_prime_UTR 50.0%
! AGGATGAAGGTGCATGTCTG+TGG + chr8_4:2281155-2281174 Msa1307070:five_prime_UTR 50.0%
! GGATGAAGGTGCATGTCTGT+GGG + chr8_4:2281156-2281175 Msa1307070:five_prime_UTR 50.0%
ATTGGAACTGACGGGGAATG+TGG + chr8_4:2281657-2281676 Msa1307070:five_prime_UTR 50.0%
AACTGACGGGGAATGTGGTA+TGG + chr8_4:2281662-2281681 Msa1307070:five_prime_UTR 50.0%
CGGGGAATGTGGTATGGTAT+TGG + chr8_4:2281668-2281687 Msa1307070:five_prime_UTR 50.0%
TGTTGTAGTCGGATCAGAGG+TGG + chr8_4:2281769-2281788 Msa1307070:five_prime_UTR 50.0%
! AGGTGGACAAGCTTTGTGAC+AGG + chr8_4:2281786-2281805 Msa1307070:five_prime_UTR 50.0%
! GGTGGACAAGCTTTGTGACA+GGG + chr8_4:2281787-2281806 Msa1307070:five_prime_UTR 50.0%
TCCATTGACAGCCACATCCA+AGG - chr8_4:2281911-2281930 None:intergenic 50.0%
TTGGATGTGGCTGTCAATGG+AGG + chr8_4:2281910-2281929 Msa1307070:five_prime_UTR 50.0%
TGGATGTGGCTGTCAATGGA+GGG + chr8_4:2281911-2281930 Msa1307070:five_prime_UTR 50.0%
CTTGTTCGTTCAAACCCCAC+AGG - chr8_4:2282184-2282203 None:intergenic 50.0%
GAAACGGGAAGGACAATCAG+TGG - chr8_4:2282451-2282470 None:intergenic 50.0%
GCATCATTAGCTGCACACCA+CGG + chr8_4:2282505-2282524 Msa1307070:five_prime_UTR 50.0%
! AGTCTGTCTGCAGGTTTGGT+TGG + chr8_4:2282552-2282571 Msa1307070:five_prime_UTR 50.0%
AGCCAGACCATCTGCAAGAA+GGG - chr8_4:2282584-2282603 None:intergenic 50.0%
CAGATGGTCTGGCTGTTACT+GGG + chr8_4:2282590-2282609 Msa1307070:five_prime_UTR 50.0%
CGAGTTGTTGGGCAACTCAA+AGG + chr8_4:2282820-2282839 Msa1307070:intron 50.0%
TCTTGTACCCAGATGAGGAG+GGG - chr8_4:2282875-2282894 None:intergenic 50.0%
GTCTTGTACCCAGATGAGGA+GGG - chr8_4:2282876-2282895 None:intergenic 50.0%
! AGTCTTGTACCCAGATGAGG+AGG - chr8_4:2282877-2282896 None:intergenic 50.0%
! AGCAGTCTTGTACCCAGATG+AGG - chr8_4:2282880-2282899 None:intergenic 50.0%
CACCAGGTGTTAGATACCCA+TGG + chr8_4:2282985-2283004 Msa1307070:intron 50.0%
GTCCATGGGTATCTAACACC+TGG - chr8_4:2282990-2283009 None:intergenic 50.0%
! TGCCTTGGGGGTATGGTTTA+TGG + chr8_4:2283020-2283039 Msa1307070:five_prime_UTR 50.0%
GTATGGTTTATGGCCGTCGA+TGG + chr8_4:2283030-2283049 Msa1307070:five_prime_UTR 50.0%
TATTGATGCAGCCTCATCCG+CGG - chr8_4:2283275-2283294 None:intergenic 50.0%
ATTGGACATAGTCGCTGTGG+CGG + chr8_4:2283365-2283384 Msa1307070:five_prime_UTR 50.0%
TATGGAGCAGACCCATCATC+TGG - chr8_4:2283413-2283432 None:intergenic 50.0%
TGGTTGCACCTCTTCTACAG+TGG + chr8_4:2283656-2283675 Msa1307070:five_prime_UTR 50.0%
GGTTGCACCTCTTCTACAGT+GGG + chr8_4:2283657-2283676 Msa1307070:five_prime_UTR 50.0%
!! GGGGCTTTGAGTATCATGCT+TGG + chr8_4:2283690-2283709 Msa1307070:five_prime_UTR 50.0%
TGTTCTGATTCAGGCTGCAG+TGG + chr8_4:2283725-2283744 Msa1307070:five_prime_UTR 50.0%
GTGCTGCGCTATTAAAGAGG+TGG + chr8_4:2284639-2284658 Msa1307070:five_prime_UTR 50.0%
TTGTACACTAGCGGGACAAC+AGG + chr8_4:2285354-2285373 Msa1307070:CDS 50.0%
ACCTGTAGGACCAGTGAAGA+AGG - chr8_4:2285441-2285460 None:intergenic 50.0%
GGAACTTCCCTACTTTGTGG+TGG + chr8_4:2285734-2285753 Msa1307070:CDS 50.0%
TGTGGTGGCATTGCAAACCT+TGG + chr8_4:2285749-2285768 Msa1307070:CDS 50.0%
TGGCATTGCAAACCTTGGAG+TGG + chr8_4:2285754-2285773 Msa1307070:CDS 50.0%
GACGAACATGGACATACCGT+AGG - chr8_4:2285963-2285982 None:intergenic 50.0%
GAAGTCGCCGGCAAAAAACG+AGG + chr8_4:2278586-2278605 Msa1307070:five_prime_UTR 55.0%
CGCCGGCAAAAAACGAGGAA+AGG + chr8_4:2278591-2278610 Msa1307070:five_prime_UTR 55.0%
AAGAGAGACGGCGAGAGAAG+AGG + chr8_4:2278683-2278702 Msa1307070:five_prime_UTR 55.0%
GCAGCCTCACTTTCCCACTT+TGG + chr8_4:2279900-2279919 Msa1307070:five_prime_UTR 55.0%
GCCTTGGATGTGGCTGTCAA+TGG + chr8_4:2281907-2281926 Msa1307070:five_prime_UTR 55.0%
ACACCACGGAGCAACATCTG+TGG + chr8_4:2282519-2282538 Msa1307070:five_prime_UTR 55.0%
GCAGTGTCCCTTCTTGCAGA+TGG + chr8_4:2282574-2282593 Msa1307070:five_prime_UTR 55.0%
GTCCCTTCTTGCAGATGGTC+TGG + chr8_4:2282579-2282598 Msa1307070:five_prime_UTR 55.0%
CAGCCAGACCATCTGCAAGA+AGG - chr8_4:2282585-2282604 None:intergenic 55.0%
GCAGATGGTCTGGCTGTTAC+TGG + chr8_4:2282589-2282608 Msa1307070:five_prime_UTR 55.0%
CAGTCTTCCCCTCCTCATCT+GGG + chr8_4:2282865-2282884 Msa1307070:intron 55.0%
! TGTTGGTTGCCTTGGGGGTA+TGG + chr8_4:2283013-2283032 Msa1307070:five_prime_UTR 55.0%
GGCCATAAACCATACCCCCA+AGG - chr8_4:2283025-2283044 None:intergenic 55.0%
CTCTAATTCGACCGCGGATG+AGG + chr8_4:2283261-2283280 Msa1307070:five_prime_UTR 55.0%
! GTCGCTGTGGCGGAATATCA+AGG + chr8_4:2283375-2283394 Msa1307070:five_prime_UTR 55.0%
GCCTTCTTCACTGGTCCTAC+AGG + chr8_4:2285437-2285456 Msa1307070:CDS 55.0%
GGAGCAACTTCAACGGCGAC+CGG + chr8_4:2278880-2278899 Msa1307070:five_prime_UTR 60.0%
!! GCAGGTGTTGGCCTTGGATG+TGG + chr8_4:2281897-2281916 Msa1307070:intron 60.0%
GGCTGTCAATGGAGGGACCA+AGG + chr8_4:2281918-2281937 Msa1307070:five_prime_UTR 60.0%
CAGCCACAGATGTTGCTCCG+TGG - chr8_4:2282525-2282544 None:intergenic 60.0%
TGGTCTGGCTGTTACTGGGC+AGG + chr8_4:2282594-2282613 Msa1307070:five_prime_UTR 60.0%
CCAGATGAGGAGGGGAAGAC+TGG - chr8_4:2282867-2282886 None:intergenic 60.0%
CCAGTCTTCCCCTCCTCATC+TGG + chr8_4:2282864-2282883 Msa1307070:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 2278551 2285992 2278551 ID=Msa1307070;Name=Msa1307070
chr8_4 mRNA 2278551 2285992 2278551 ID=Msa1307070-mRNA-1;Parent=Msa1307070;Name=Msa1307070-mRNA-1;_AED=0.15;_eAED=0.15;_QI=3796|0.85|0.86|1|0.35|0.4|15|0|238
chr8_4 exon 2278551 2278751 2278551 ID=Msa1307070-mRNA-1:exon:712;Parent=Msa1307070-mRNA-1
chr8_4 exon 2278867 2278946 2278867 ID=Msa1307070-mRNA-1:exon:713;Parent=Msa1307070-mRNA-1
chr8_4 exon 2279088 2279139 2279088 ID=Msa1307070-mRNA-1:exon:714;Parent=Msa1307070-mRNA-1
chr8_4 exon 2279226 2279535 2279226 ID=Msa1307070-mRNA-1:exon:715;Parent=Msa1307070-mRNA-1
chr8_4 exon 2279872 2279964 2279872 ID=Msa1307070-mRNA-1:exon:716;Parent=Msa1307070-mRNA-1
chr8_4 exon 2280085 2280187 2280085 ID=Msa1307070-mRNA-1:exon:717;Parent=Msa1307070-mRNA-1
chr8_4 exon 2280523 2280603 2280523 ID=Msa1307070-mRNA-1:exon:718;Parent=Msa1307070-mRNA-1
chr8_4 exon 2281123 2281320 2281123 ID=Msa1307070-mRNA-1:exon:719;Parent=Msa1307070-mRNA-1
chr8_4 exon 2281405 2281808 2281405 ID=Msa1307070-mRNA-1:exon:720;Parent=Msa1307070-mRNA-1
chr8_4 exon 2281901 2282047 2281901 ID=Msa1307070-mRNA-1:exon:721;Parent=Msa1307070-mRNA-1
chr8_4 exon 2282486 2282615 2282486 ID=Msa1307070-mRNA-1:exon:722;Parent=Msa1307070-mRNA-1
chr8_4 exon 2282991 2285222 2282991 ID=Msa1307070-mRNA-1:exon:723;Parent=Msa1307070-mRNA-1
chr8_4 exon 2285334 2285458 2285334 ID=Msa1307070-mRNA-1:exon:724;Parent=Msa1307070-mRNA-1
chr8_4 exon 2285566 2285793 2285566 ID=Msa1307070-mRNA-1:exon:725;Parent=Msa1307070-mRNA-1
chr8_4 exon 2285864 2285992 2285864 ID=Msa1307070-mRNA-1:exon:726;Parent=Msa1307070-mRNA-1
chr8_4 five_prime_UTR 2278551 2278751 2278551 ID=Msa1307070-mRNA-1:five_prime_utr;Parent=Msa1307070-mRNA-1
chr8_4 five_prime_UTR 2278867 2278946 2278867 ID=Msa1307070-mRNA-1:five_prime_utr;Parent=Msa1307070-mRNA-1
chr8_4 five_prime_UTR 2279088 2279139 2279088 ID=Msa1307070-mRNA-1:five_prime_utr;Parent=Msa1307070-mRNA-1
chr8_4 five_prime_UTR 2279226 2279535 2279226 ID=Msa1307070-mRNA-1:five_prime_utr;Parent=Msa1307070-mRNA-1
chr8_4 five_prime_UTR 2279872 2279964 2279872 ID=Msa1307070-mRNA-1:five_prime_utr;Parent=Msa1307070-mRNA-1
chr8_4 five_prime_UTR 2280085 2280187 2280085 ID=Msa1307070-mRNA-1:five_prime_utr;Parent=Msa1307070-mRNA-1
chr8_4 five_prime_UTR 2280523 2280603 2280523 ID=Msa1307070-mRNA-1:five_prime_utr;Parent=Msa1307070-mRNA-1
chr8_4 five_prime_UTR 2281123 2281320 2281123 ID=Msa1307070-mRNA-1:five_prime_utr;Parent=Msa1307070-mRNA-1
chr8_4 five_prime_UTR 2281405 2281808 2281405 ID=Msa1307070-mRNA-1:five_prime_utr;Parent=Msa1307070-mRNA-1
chr8_4 five_prime_UTR 2281901 2282047 2281901 ID=Msa1307070-mRNA-1:five_prime_utr;Parent=Msa1307070-mRNA-1
chr8_4 five_prime_UTR 2282486 2282615 2282486 ID=Msa1307070-mRNA-1:five_prime_utr;Parent=Msa1307070-mRNA-1
chr8_4 five_prime_UTR 2282991 2284987 2282991 ID=Msa1307070-mRNA-1:five_prime_utr;Parent=Msa1307070-mRNA-1
chr8_4 CDS 2284988 2285222 2284988 ID=Msa1307070-mRNA-1:cds;Parent=Msa1307070-mRNA-1
chr8_4 CDS 2285334 2285458 2285334 ID=Msa1307070-mRNA-1:cds;Parent=Msa1307070-mRNA-1
chr8_4 CDS 2285566 2285793 2285566 ID=Msa1307070-mRNA-1:cds;Parent=Msa1307070-mRNA-1
chr8_4 CDS 2285864 2285992 2285864 ID=Msa1307070-mRNA-1:cds;Parent=Msa1307070-mRNA-1
Gene Sequence

>Msa1307070

ATGCTTCAAAATGAACCTTACCTAAGGAAGAAAAAAATTGGCGATGTGTCTGCTATATTGAGTACTGAAGATCATGGTGAATTAATGCAAAGCATTGCCAATAAAACCTCTTCTCAGTTTTTCCATATTCTGCCTGTTCCTAATAATTCCTCTAAGAAGAGTAGTAGAAATGGACATTCACAAAATGGGGAAATTGATGCAGAAAGAATTTTCCTGAAAAATGTCGAAAGATCAAGTGAAGATTCGGCACTGATTTTGTACACTAGCGGGACAACAGGTAAAAACAAACAGATATTAGATTGTATGCTGATTGTTACTTCAAATTTTGCAGACAAATTGCCTTCTTCACTGGTCCTACAGCTAAATGTTTATGTATTCTCTATTATTACAGTTGGAGGGCTTCTTAATGCAACATGTGGGAATATTAGTGAGCTGATAATAGCAATATTTGCTCTTAGCAGCAACCAAATTGTTGTTGTCAAGTATTCTCTTTTAGGTTCCATCCTTTCAAACCTTCTTCTTGTGCTTGGAACTTCCCTACTTTGTGGTGGCATTGCAAACCTTGGAGTGGAGCAAAAATATGACAGGTGGTTAGTGAGTTCAGCGAATTGTTCAAGAGAACCTAACTTATCAAATCCTGAGAACATGGATGTTTCTGCTGAATGCTCGAAATCTATCAGCGTTCCTACGGTATGTCCATGTTCGTCTCTGAAATAG
Protein sequence

>Msa1307070

MLQNEPYLRKKKIGDVSAILSTEDHGELMQSIANKTSSQFFHILPVPNNSSKKSSRNGHSQNGEIDAERIFLKNVERSSEDSALILYTSGTTGKNKQILDCMLIVTSNFADKLPSSLVLQLNVYVFSIITVGGLLNATCGNISELIIAIFALSSNQIVVVKYSLLGSILSNLLLVLGTSLLCGGIANLGVEQKYDRWLVSSANCSREPNLSNPENMDVSAECSKSISVPTVCPCSSLK*