AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0640510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0640510 MtrunA17_Chr4g0024741 98.817 169 2 0 1 169 1 169 3.77e-125 348
Msa0640510 MtrunA17_Chr8g0385351 90.643 171 14 1 1 169 1 171 1.48e-108 306
Msa0640510 MtrunA17_Chr8g0390661 38.272 81 49 1 87 166 25 105 4.04e-14 65.1
Msa0640510 MtrunA17_Chr5g0432621 29.577 142 83 3 26 166 40 165 6.30e-14 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0640510 AT1G51160.1 88.757 169 19 0 1 169 1 169 6.10e-116 325
Msa0640510 AT1G51160.3 88.757 169 19 0 1 169 1 169 6.10e-116 325
Msa0640510 AT1G51160.2 88.757 169 19 0 1 169 1 169 6.10e-116 325
Msa0640510 AT5G02280.1 40.741 81 47 1 87 166 52 132 5.00e-13 63.2

Find 65 sgRNAs with CRISPR-Local

Find 454 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTTGTTTGGTTTAAATTT+TGG 0.118454 4_3:+39227869 None:intergenic
CAAATTGTAGATGTACTTTA+AGG 0.146124 4_3:+39228793 None:intergenic
TATGCATTGTTAACTCATTT+TGG 0.180806 4_3:-39227817 Msa0640510:three_prime_UTR
TAAGTCGTTAACCGCGAAAA+TGG 0.262446 4_3:-39233663 Msa0640510:CDS
TACATACAAACTTAGTTTCA+TGG 0.274899 4_3:-39231866 Msa0640510:CDS
ATAAAATTTAAGAGCTTGTT+TGG 0.285338 4_3:+39227857 None:intergenic
TACGCCAAGGTTTCCTTTCT+CGG 0.300504 4_3:+39231936 None:intergenic
TGAAGAAGAATGCAATTCTT+TGG 0.305795 4_3:-39233863 Msa0640510:exon
TGAACAATATAGAGTTGTTT+TGG 0.318777 4_3:-39227693 Msa0640510:three_prime_UTR
AGTTTCATGGAAAGTCCTTC+TGG 0.321603 4_3:-39231853 Msa0640510:CDS
CAAGATCATAAGTTGATGTT+TGG 0.353145 4_3:-39233701 Msa0640510:CDS
ATCCTAGAACTGGTGATCTT+CGG 0.365984 4_3:-39228820 Msa0640510:CDS
TCCTAGAACTGGTGATCTTC+GGG 0.367998 4_3:-39228819 Msa0640510:CDS
GGAAAGTCCTTCTGGAATAA+AGG 0.375488 4_3:-39231845 Msa0640510:intron
CCGCCTGCGCCGACGGCATC+GGG 0.375568 4_3:-39233818 Msa0640510:CDS
ATACACCTGGATCTCCTATC+AGG 0.385311 4_3:-39228739 Msa0640510:intron
ACCGCCTGCGCCGACGGCAT+CGG 0.397640 4_3:-39233819 Msa0640510:CDS
ATATGTTGTATATGTTCAAC+AGG 0.424599 4_3:-39233784 Msa0640510:CDS
GCCGTCGGCGCAGGCGGTGA+CGG 0.431684 4_3:+39233824 None:intergenic
CATTATCAGTCACAAACTCT+TGG 0.432047 4_3:-39227970 Msa0640510:three_prime_UTR
TTTCCCGATGCCGTCGGCGC+AGG 0.440374 4_3:+39233815 None:intergenic
TCCGTCACCGCCTGCGCCGA+CGG 0.451526 4_3:-39233825 Msa0640510:CDS
CGACTCCATGCAGATTATCT+TGG 0.465225 4_3:-39228849 Msa0640510:intron
GTTTATGTTAAAGCAATAGA+TGG 0.465319 4_3:-39227927 Msa0640510:three_prime_UTR
CATCATAAACAATAAGAAGT+TGG 0.467920 4_3:-39234085 Msa0640510:five_prime_UTR
ATGCAATGCCTCTCACATAC+TGG 0.470750 4_3:+39228072 None:intergenic
GTTGAGCATTCAAAGTATGA+AGG 0.475252 4_3:+39233723 None:intergenic
TTGGTAACTCATCCTAGAAC+TGG 0.478485 4_3:-39228830 Msa0640510:CDS
CCCGATGCCGTCGGCGCAGG+CGG 0.494602 4_3:+39233818 None:intergenic
CGACGGCATCGGGAAACAAT+GGG 0.499063 4_3:-39233808 Msa0640510:CDS
ATTATCAGTCACAAACTCTT+GGG 0.502787 4_3:-39227969 Msa0640510:three_prime_UTR
CCGACGGCATCGGGAAACAA+TGG 0.505504 4_3:-39233809 Msa0640510:CDS
TCCCGAAGATCACCAGTTCT+AGG 0.509037 4_3:+39228818 None:intergenic
CGGAAGTCGGCGATGAACTC+CGG 0.512568 4_3:+39234023 None:intergenic
TCTTTGTGCAGTGCCGAGAA+AGG 0.519539 4_3:-39231949 Msa0640510:intron
CATCTTACCTTTATTCCAGA+AGG 0.520623 4_3:+39231838 None:intergenic
AGAAGAATGCAATTCTTTGG+TGG 0.520953 4_3:-39233860 Msa0640510:exon
TTTGCTTGCTTTATAGAGAG+TGG 0.527179 4_3:-39233754 Msa0640510:CDS
TGTTACCTGATAGGAGATCC+AGG 0.533439 4_3:+39228734 None:intergenic
TGAACTCATGTGTTGTAGAA+TGG 0.536167 4_3:-39228016 Msa0640510:three_prime_UTR
ACACATGAGTTCATCAATGA+TGG 0.544966 4_3:+39228026 None:intergenic
TTGAGCATTCAAAGTATGAA+GGG 0.545951 4_3:+39233724 None:intergenic
TTGTATATGTTCAACAGGAA+TGG 0.548527 4_3:-39233779 Msa0640510:CDS
CCATTGTTTCCCGATGCCGT+CGG 0.554945 4_3:+39233809 None:intergenic
CTTGGCGTACCTCAGTTACC+TGG 0.557774 4_3:-39231922 Msa0640510:CDS
AACTGTGAAATGAACAACCT+TGG 0.558935 4_3:+39231899 None:intergenic
CTGATCTCGACTCATTTCCC+CGG 0.567050 4_3:-39234055 Msa0640510:five_prime_UTR
ATTTCCCCGGAAAACGCCAC+CGG 0.572470 4_3:-39234042 Msa0640510:five_prime_UTR
AATAATAATTAATACCTGGT+GGG 0.575000 4_3:+39233638 None:intergenic
TGAAATGAACAACCTTGGCC+AGG 0.577946 4_3:+39231904 None:intergenic
GTACCTCAGTTACCTGGCCA+AGG 0.580976 4_3:-39231916 Msa0640510:CDS
CCGCGAAAATGGATCCCACC+AGG 0.585634 4_3:-39233652 Msa0640510:intron
AAGAATCCACTCTATACACC+TGG 0.593372 4_3:-39228752 Msa0640510:CDS
AAAATGAGTTAACAATGCAT+AGG 0.604448 4_3:+39227819 None:intergenic
GGAGATCCAGGTGTATAGAG+TGG 0.614102 4_3:+39228746 None:intergenic
GGCATTGCATAGAAGATGAG+TGG 0.629430 4_3:-39228059 Msa0640510:exon
ACATAAACACAAACAACGCG+AGG 0.629645 4_3:+39227942 None:intergenic
TCTAAACCGTGAGCTTATTG+CGG 0.630904 4_3:-39227739 Msa0640510:three_prime_UTR
CAACCTTGGCCAGGTAACTG+AGG 0.641998 4_3:+39231913 None:intergenic
AGTGCCGAGAAAGGAAACCT+TGG 0.642256 4_3:-39231940 Msa0640510:CDS
CAGGTAACTGAGGTACGCCA+AGG 0.645961 4_3:+39231923 None:intergenic
TGAGCATTCAAAGTATGAAG+GGG 0.646361 4_3:+39233725 None:intergenic
AGATATCCGCAATAAGCTCA+CGG 0.654732 4_3:+39227733 None:intergenic
ACGTTAGACCAGTATGTGAG+AGG 0.670228 4_3:-39228080 Msa0640510:CDS
AAGTCGGCGATGAACTCCGG+TGG 0.678129 4_3:+39234026 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTATCTGAAAAAT+CGG + chr4_3:39228752-39228771 None:intergenic 10.0%
!! TCAAAATAATAATTAATACC+TGG + chr4_3:39228099-39228118 None:intergenic 15.0%
!! TATTAATAAATGCTTATTTG+TGG - chr4_3:39228629-39228648 Msa0640510:intron 15.0%
!! AAAGCTTATTATTGATAAAA+AGG - chr4_3:39229324-39229343 Msa0640510:intron 15.0%
!!! TATTTTGTGTAATTATTCAT+AGG - chr4_3:39229737-39229756 Msa0640510:intron 15.0%
!! TTATATGTTAGAAATATGTT+AGG - chr4_3:39230043-39230062 Msa0640510:intron 15.0%
!! TCATTGAAATAATAAATTTC+AGG + chr4_3:39230496-39230515 None:intergenic 15.0%
!!! TTAACAGGTTTATTTTTTTT+TGG - chr4_3:39230641-39230660 Msa0640510:intron 15.0%
!! GAAAAATTAAAATAAAAGTG+TGG + chr4_3:39230670-39230689 None:intergenic 15.0%
!!! TTTTTGTTTGTGAAAATAAA+AGG - chr4_3:39231042-39231061 Msa0640510:intron 15.0%
!!! TAGAACTCTATTTTTAATAT+AGG - chr4_3:39231066-39231085 Msa0640510:intron 15.0%
!!! AGAACTCTATTTTTAATATA+GGG - chr4_3:39231067-39231086 Msa0640510:intron 15.0%
!! TAACAGAAACAAAAATATAA+AGG - chr4_3:39232306-39232325 Msa0640510:intron 15.0%
!! AGTAATTCAAATAAGATTTA+CGG - chr4_3:39232370-39232389 Msa0640510:intron 15.0%
!! AGAACAAAAAAAATATCATT+CGG + chr4_3:39232575-39232594 None:intergenic 15.0%
!! AATAATAATTAATACCTGGT+GGG + chr4_3:39228095-39228114 None:intergenic 20.0%
!! AAATAATAATTAATACCTGG+TGG + chr4_3:39228096-39228115 None:intergenic 20.0%
!! AATGAGTTGTTTATTTAAAC+AGG - chr4_3:39228809-39228828 Msa0640510:CDS 20.0%
!! ATGAGTTGTTTATTTAAACA+GGG - chr4_3:39228810-39228829 Msa0640510:CDS 20.0%
!!! ACTAAGAATATAAAAGCATA+AGG + chr4_3:39228836-39228855 None:intergenic 20.0%
!! TTATATTCTTAGTGTATGTA+TGG - chr4_3:39228843-39228862 Msa0640510:intron 20.0%
!! TCACTAAATAATAATATGCT+TGG + chr4_3:39229152-39229171 None:intergenic 20.0%
!! GCATATTATTATTTAGTGAA+AGG - chr4_3:39229153-39229172 Msa0640510:intron 20.0%
!!! TAGGATATTTGTTTATTTTG+AGG - chr4_3:39229554-39229573 Msa0640510:intron 20.0%
!!! AGAAAAAAAGATTTTTCAAG+GGG + chr4_3:39230299-39230318 None:intergenic 20.0%
!!! GAGAAAAAAAGATTTTTCAA+GGG + chr4_3:39230300-39230319 None:intergenic 20.0%
!!! AGAGAAAAAAAGATTTTTCA+AGG + chr4_3:39230301-39230320 None:intergenic 20.0%
!!! ATATGTTTTATCAACTCATT+CGG - chr4_3:39230798-39230817 Msa0640510:intron 20.0%
!! GATAAATAATAATTTACGCT+TGG - chr4_3:39230928-39230947 Msa0640510:intron 20.0%
!! GAATACTGAAAATTGTATAT+AGG - chr4_3:39232229-39232248 Msa0640510:intron 20.0%
!! GTATAAAAGTTCCTTAAATT+AGG + chr4_3:39232268-39232287 None:intergenic 20.0%
!! ACAATACAATTAGTAGTATA+AGG + chr4_3:39232851-39232870 None:intergenic 20.0%
!! TAAAAATTATGTTACCTGAT+AGG + chr4_3:39233008-39233027 None:intergenic 20.0%
!! ATATGAGAAAAAAATGCAAA+GGG + chr4_3:39233086-39233105 None:intergenic 20.0%
!! AATATGAGAAAAAAATGCAA+AGG + chr4_3:39233087-39233106 None:intergenic 20.0%
!! CATATTTATCATCCATATAT+AGG - chr4_3:39233101-39233120 Msa0640510:intron 20.0%
!! AAAACGAAAATTCCTATATA+TGG + chr4_3:39233116-39233135 None:intergenic 20.0%
!! GAAATACAACAAAAGAAAAA+AGG + chr4_3:39233408-39233427 None:intergenic 20.0%
!! CAATACATAAAAATTGAATC+AGG + chr4_3:39233487-39233506 None:intergenic 20.0%
!!! TTTTTCTTCTTCAATGTTAA+TGG - chr4_3:39233526-39233545 Msa0640510:intron 20.0%
!!! TTTTCTTCTTCAATGTTAAT+GGG - chr4_3:39233527-39233546 Msa0640510:intron 20.0%
!!! ATAAAATTTAAGAGCTTGTT+TGG + chr4_3:39233876-39233895 None:intergenic 20.0%
!!! TTAAATTTTATGTTGTCACT+TGG - chr4_3:39233885-39233904 Msa0640510:intron 20.0%
!!! TTAATTGAATTTAGCTTTTG+CGG - chr4_3:39234072-39234091 Msa0640510:five_prime_UTR 20.0%
! CATCATAAACAATAAGAAGT+TGG - chr4_3:39227645-39227664 Msa0640510:three_prime_UTR 25.0%
! TACATTAAGCACAGAAATTA+TGG + chr4_3:39227821-39227840 None:intergenic 25.0%
!! TCTGTGCTTAATGTAATTTT+TGG - chr4_3:39227826-39227845 Msa0640510:three_prime_UTR 25.0%
!!! TTTTTGGTTTATTATCAGTG+AGG - chr4_3:39227842-39227861 Msa0640510:three_prime_UTR 25.0%
! ATATGTTGTATATGTTCAAC+AGG - chr4_3:39227946-39227965 Msa0640510:three_prime_UTR 25.0%
! TCAAATAAGTCAATTCAAAC+AGG + chr4_3:39228222-39228241 None:intergenic 25.0%
! TATTATTCATAAGCTTGTCA+AGG - chr4_3:39228329-39228348 Msa0640510:intron 25.0%
!! AAATAAACAACTCATTTTGC+AGG + chr4_3:39228805-39228824 None:intergenic 25.0%
! AAAAGACTGAATTGTACTTT+CGG - chr4_3:39229050-39229069 Msa0640510:intron 25.0%
! CTGATAAATGATAACTTGAA+AGG + chr4_3:39229227-39229246 None:intergenic 25.0%
! TCTTAAAGTCTTTACAGAAA+TGG - chr4_3:39229247-39229266 Msa0640510:intron 25.0%
! TAATCTACATATTAAACCAC+AGG + chr4_3:39229369-39229388 None:intergenic 25.0%
!!! CTTATCTTTACATTTTAGCA+AGG + chr4_3:39229439-39229458 None:intergenic 25.0%
! CAAATATCCTATTAAATTCC+TGG + chr4_3:39229545-39229564 None:intergenic 25.0%
!! CAATTCATGGATTTTATGAT+AGG - chr4_3:39229714-39229733 Msa0640510:intron 25.0%
! TACATACAAACTTAGTTTCA+TGG - chr4_3:39229864-39229883 Msa0640510:intron 25.0%
! GAATCTAATAATGACCTATA+AGG + chr4_3:39229935-39229954 None:intergenic 25.0%
!! ATTTTAAACACATGTTTCCT+TGG - chr4_3:39230154-39230173 Msa0640510:intron 25.0%
! GAGAGAATACATAAATCATT+TGG - chr4_3:39230419-39230438 Msa0640510:intron 25.0%
!!! ATTTGGTTTTCTGATATTTG+AGG - chr4_3:39230436-39230455 Msa0640510:intron 25.0%
! AATGAGAAAACTAAAATGAG+TGG - chr4_3:39230511-39230530 Msa0640510:intron 25.0%
!! TTAATTTTTCATTCTTGTGC+TGG - chr4_3:39230680-39230699 Msa0640510:intron 25.0%
!! TAATTTTTCATTCTTGTGCT+GGG - chr4_3:39230681-39230700 Msa0640510:intron 25.0%
! CACAAAAAGTTAGTTAATGA+TGG + chr4_3:39231004-39231023 None:intergenic 25.0%
!!! ATTATCTTTTTGTCACTTGT+GGG - chr4_3:39231303-39231322 Msa0640510:intron 25.0%
!!! TTCATTTCTTCCTTTGTTTT+TGG - chr4_3:39231735-39231754 Msa0640510:intron 25.0%
!!! TCATTTCTTCCTTTGTTTTT+GGG - chr4_3:39231736-39231755 Msa0640510:intron 25.0%
!!! TTTTGTTTGGTTTTTGTTGT+TGG - chr4_3:39231784-39231803 Msa0640510:intron 25.0%
!! TTCCTTTTCGTTATTCTTAT+GGG - chr4_3:39231839-39231858 Msa0640510:intron 25.0%
! ACTCGAATAAACCTAATTTA+AGG - chr4_3:39232254-39232273 Msa0640510:intron 25.0%
!! ATTTAAGGAACTTTTATACG+AGG - chr4_3:39232269-39232288 Msa0640510:intron 25.0%
! TTATAGAAGAAAAACTGAGA+TGG - chr4_3:39232341-39232360 Msa0640510:intron 25.0%
! GTAAGTGAAAATATTATGAG+TGG - chr4_3:39232441-39232460 Msa0640510:intron 25.0%
! CAAATTGTAGATGTACTTTA+AGG + chr4_3:39232940-39232959 None:intergenic 25.0%
! TCCAATAACAAATAAGAAGA+AGG - chr4_3:39233051-39233070 Msa0640510:intron 25.0%
! CCAATAACAAATAAGAAGAA+GGG - chr4_3:39233052-39233071 Msa0640510:intron 25.0%
!!! ATTTTTTTCCTGCATCTAAA+TGG - chr4_3:39233156-39233175 Msa0640510:intron 25.0%
!!! TTTTTTTCCTGCATCTAAAT+GGG - chr4_3:39233157-39233176 Msa0640510:intron 25.0%
! AAAAAAGGATGAAAAGAAAG+GGG + chr4_3:39233191-39233210 None:intergenic 25.0%
! CAAAAAAGGATGAAAAGAAA+GGG + chr4_3:39233192-39233211 None:intergenic 25.0%
! ACAAAAAAGGATGAAAAGAA+AGG + chr4_3:39233193-39233212 None:intergenic 25.0%
! TGAAAAAGCAAAGACAAAAA+AGG + chr4_3:39233206-39233225 None:intergenic 25.0%
! AAAATTAGCATAGCAAAAGT+AGG - chr4_3:39233244-39233263 Msa0640510:intron 25.0%
! AAATTAGCATAGCAAAAGTA+GGG - chr4_3:39233245-39233264 Msa0640510:intron 25.0%
!! TTATATACTTGTTGAACGAA+AGG - chr4_3:39233329-39233348 Msa0640510:intron 25.0%
!! TATATACTTGTTGAACGAAA+GGG - chr4_3:39233330-39233349 Msa0640510:intron 25.0%
!!! AAGAAATAAAGGTTTTTCGA+TGG - chr4_3:39233590-39233609 Msa0640510:intron 25.0%
! GTTTATGTTAAAGCAATAGA+TGG - chr4_3:39233803-39233822 Msa0640510:CDS 25.0%
!!! GCTTGTTTGGTTTAAATTTT+GGG + chr4_3:39233863-39233882 None:intergenic 25.0%
!!! AGCTTGTTTGGTTTAAATTT+TGG + chr4_3:39233864-39233883 None:intergenic 25.0%
! AAAATGAGTTAACAATGCAT+AGG + chr4_3:39233914-39233933 None:intergenic 25.0%
!! TATGCATTGTTAACTCATTT+TGG - chr4_3:39233913-39233932 Msa0640510:intron 25.0%
!!! TTAACTCATTTTGGTTTTTG+CGG - chr4_3:39233922-39233941 Msa0640510:intron 25.0%
!!! CTAAACTTTTTTCGTGTATA+TGG - chr4_3:39233951-39233970 Msa0640510:intron 25.0%
!! TGAACAATATAGAGTTGTTT+TGG - chr4_3:39234037-39234056 Msa0640510:five_prime_UTR 25.0%
AATTGTGAAAAATGAGTACC+TGG + chr4_3:39227752-39227771 None:intergenic 30.0%
! ACAGAAATTATGGATGGATT+CGG + chr4_3:39227811-39227830 None:intergenic 30.0%
TTAAGCACAGAAATTATGGA+TGG + chr4_3:39227817-39227836 None:intergenic 30.0%
TGAAGAAGAATGCAATTCTT+TGG - chr4_3:39227867-39227886 Msa0640510:three_prime_UTR 30.0%
TTGTATATGTTCAACAGGAA+TGG - chr4_3:39227951-39227970 Msa0640510:three_prime_UTR 30.0%
TTGAGCATTCAAAGTATGAA+GGG + chr4_3:39228009-39228028 None:intergenic 30.0%
!! CAAGATCATAAGTTGATGTT+TGG - chr4_3:39228029-39228048 Msa0640510:three_prime_UTR 30.0%
AAGTGATTTGAAGAATGCTT+AGG - chr4_3:39228195-39228214 Msa0640510:intron 30.0%
AGTGATTTGAAGAATGCTTA+GGG - chr4_3:39228196-39228215 Msa0640510:intron 30.0%
TATATTGACATAGAGACGTT+TGG - chr4_3:39228249-39228268 Msa0640510:intron 30.0%
AAAAAATAAGCCAATCCGAA+CGG - chr4_3:39228455-39228474 Msa0640510:intron 30.0%
AACAGCTCAAAAATGCTTAT+GGG + chr4_3:39228482-39228501 None:intergenic 30.0%
AAACAGCTCAAAAATGCTTA+TGG + chr4_3:39228483-39228502 None:intergenic 30.0%
!! TACGCTATTTCTATAACACA+AGG + chr4_3:39228611-39228630 None:intergenic 30.0%
AATCCTATTGTCCACTATTA+GGG + chr4_3:39228694-39228713 None:intergenic 30.0%
TTATCTGAAAAATCGGTATC+CGG + chr4_3:39228745-39228764 None:intergenic 30.0%
! TTTTGCAGTGTTGTAAAGTA+GGG - chr4_3:39228873-39228892 Msa0640510:intron 30.0%
AAGAAACTCTATCATTACTC+TGG + chr4_3:39229078-39229097 None:intergenic 30.0%
TAATATGCTTGGTTAGTAGT+TGG + chr4_3:39229141-39229160 None:intergenic 30.0%
TCAATCACCAGGAATTTAAT+AGG - chr4_3:39229535-39229554 Msa0640510:intron 30.0%
CTGAGAAAACTAGAAGAATA+GGG + chr4_3:39229597-39229616 None:intergenic 30.0%
TCTGAGAAAACTAGAAGAAT+AGG + chr4_3:39229598-39229617 None:intergenic 30.0%
GAATAAACTACTCATGTGAT+GGG + chr4_3:39229632-39229651 None:intergenic 30.0%
AGAATAAACTACTCATGTGA+TGG + chr4_3:39229633-39229652 None:intergenic 30.0%
CATCAATGATCAACAATTCA+TGG - chr4_3:39229701-39229720 Msa0640510:intron 30.0%
CTACATATGTGTTTCCTTAT+AGG - chr4_3:39229918-39229937 Msa0640510:intron 30.0%
AGGTCATTATTAGATTCTTG+TGG - chr4_3:39229938-39229957 Msa0640510:intron 30.0%
TTAACCAATGAATAGGCATT+AGG + chr4_3:39229976-39229995 None:intergenic 30.0%
AGCTGTATTAACCAATGAAT+AGG + chr4_3:39229983-39230002 None:intergenic 30.0%
! CATTGGTTAATACAGCTATT+TGG - chr4_3:39229986-39230005 Msa0640510:intron 30.0%
! AAGTTTTTCATTCACAGCTA+AGG + chr4_3:39230085-39230104 None:intergenic 30.0%
! TAAAGCTATTGATTGGTGAA+GGG + chr4_3:39230196-39230215 None:intergenic 30.0%
GCTTAACTAAAGCTATTGAT+TGG + chr4_3:39230203-39230222 None:intergenic 30.0%
!! GCTATTGGTGTTTTAAATGT+GGG + chr4_3:39230254-39230273 None:intergenic 30.0%
!! AGCTATTGGTGTTTTAAATG+TGG + chr4_3:39230255-39230274 None:intergenic 30.0%
! ATTTAAAACACCAATAGCTC+TGG - chr4_3:39230256-39230275 Msa0640510:intron 30.0%
! TGACTCTGAAGAAAAAATGT+AGG - chr4_3:39230388-39230407 Msa0640510:intron 30.0%
! GATATTTGAGGTTCAGAAAA+TGG - chr4_3:39230448-39230467 Msa0640510:intron 30.0%
!! TTCCTCATGTGATTTTAACA+TGG - chr4_3:39230590-39230609 Msa0640510:intron 30.0%
!! TCCTCATGTGATTTTAACAT+GGG - chr4_3:39230591-39230610 Msa0640510:intron 30.0%
! AATTTTTCATTCTTGTGCTG+GGG - chr4_3:39230682-39230701 Msa0640510:intron 30.0%
!!! ATCCCTGGTTTATTTTTGTT+GGG + chr4_3:39230720-39230739 None:intergenic 30.0%
GGATATTTACTTTAGATCTG+TGG - chr4_3:39230746-39230765 Msa0640510:intron 30.0%
AGATGGAAGTGAAATAAAAC+TGG - chr4_3:39230874-39230893 Msa0640510:intron 30.0%
! TTAACTAACTTTTTGTGCCA+TGG - chr4_3:39231007-39231026 Msa0640510:intron 30.0%
AAAAACTGATCTCATTTCCA+TGG + chr4_3:39231027-39231046 None:intergenic 30.0%
!! GATTATCTTTTTGTCACTTG+TGG - chr4_3:39231302-39231321 Msa0640510:intron 30.0%
!! TTATCTTTTTGTCACTTGTG+GGG - chr4_3:39231304-39231323 Msa0640510:intron 30.0%
TATAGGATTTATAGGTGGTT+AGG - chr4_3:39231344-39231363 Msa0640510:intron 30.0%
ATAGGATTTATAGGTGGTTA+GGG - chr4_3:39231345-39231364 Msa0640510:intron 30.0%
! ATTTTGTTGGGCTTTTTGAT+GGG - chr4_3:39231390-39231409 Msa0640510:intron 30.0%
TCCTAAAAAAACCAAAACCA+CGG + chr4_3:39231558-39231577 None:intergenic 30.0%
CAGCATATAAACTCAAAAGA+CGG + chr4_3:39231677-39231696 None:intergenic 30.0%
!! TGGTGTTTTTGTTTATCTGT+TGG - chr4_3:39231804-39231823 Msa0640510:intron 30.0%
!! TGTTTTTGTTTATCTGTTGG+TGG - chr4_3:39231807-39231826 Msa0640510:intron 30.0%
! CTTCCTTTTCGTTATTCTTA+TGG - chr4_3:39231838-39231857 Msa0640510:intron 30.0%
! TCCTTTTCGTTATTCTTATG+GGG - chr4_3:39231840-39231859 Msa0640510:intron 30.0%
GAACAAATGTACAACGAAAA+AGG + chr4_3:39231898-39231917 None:intergenic 30.0%
TGAGTTAAATATGATGCTGA+TGG - chr4_3:39232403-39232422 Msa0640510:intron 30.0%
GAGTTAAATATGATGCTGAT+GGG - chr4_3:39232404-39232423 Msa0640510:intron 30.0%
AGTTAAATATGATGCTGATG+GGG - chr4_3:39232405-39232424 Msa0640510:intron 30.0%
AGTGAAAATATTATGAGTGG+AGG - chr4_3:39232444-39232463 Msa0640510:intron 30.0%
GTGAAAATATTATGAGTGGA+GGG - chr4_3:39232445-39232464 Msa0640510:intron 30.0%
TGAAAATATTATGAGTGGAG+GGG - chr4_3:39232446-39232465 Msa0640510:intron 30.0%
AGAAGTTATGTGAAGTAAAG+AGG - chr4_3:39232746-39232765 Msa0640510:intron 30.0%
!! CCCTTCTTCTTATTTGTTAT+TGG + chr4_3:39233055-39233074 None:intergenic 30.0%
! TGGAGATTTTCAATTGTTTC+TGG - chr4_3:39233271-39233290 Msa0640510:intron 30.0%
!! GGAGATTTTCAATTGTTTCT+GGG - chr4_3:39233272-39233291 Msa0640510:intron 30.0%
! GAACTTCAAAAGTGTGATAA+AGG - chr4_3:39233299-39233318 Msa0640510:intron 30.0%
! ATATACTTGTTGAACGAAAG+GGG - chr4_3:39233331-39233350 Msa0640510:intron 30.0%
!! CTTCAATGTTAATGGGTTTA+TGG - chr4_3:39233534-39233553 Msa0640510:intron 30.0%
GTTCATGTGGAAAGAAATAA+AGG - chr4_3:39233579-39233598 Msa0640510:intron 30.0%
!!! ATGGTTTGATGGATTTTCAT+AGG - chr4_3:39233609-39233628 Msa0640510:intron 30.0%
ATTATCAGTCACAAACTCTT+GGG - chr4_3:39233761-39233780 Msa0640510:CDS 30.0%
!!! GATTAGTTTTTCGCTGTTGA+CGG + chr4_3:39227730-39227749 None:intergenic 35.0%
AGAAGAATGCAATTCTTTGG+TGG - chr4_3:39227870-39227889 Msa0640510:three_prime_UTR 35.0%
TTTGCTTGCTTTATAGAGAG+TGG - chr4_3:39227976-39227995 Msa0640510:three_prime_UTR 35.0%
TGAGCATTCAAAGTATGAAG+GGG + chr4_3:39228008-39228027 None:intergenic 35.0%
GTTGAGCATTCAAAGTATGA+AGG + chr4_3:39228010-39228029 None:intergenic 35.0%
AAGCTTGTCAAGGTAGTTTA+TGG - chr4_3:39228339-39228358 Msa0640510:intron 35.0%
AAAAATAAGCCAATCCGAAC+GGG - chr4_3:39228456-39228475 Msa0640510:intron 35.0%
!! TAGCTTGCTTTGCCTTTAAA+TGG - chr4_3:39228665-39228684 Msa0640510:intron 35.0%
! AGCTTGCTTTGCCTTTAAAT+GGG - chr4_3:39228666-39228685 Msa0640510:intron 35.0%
ATCCTATTGTCCACTATTAG+GGG + chr4_3:39228693-39228712 None:intergenic 35.0%
CAATCCTATTGTCCACTATT+AGG + chr4_3:39228695-39228714 None:intergenic 35.0%
!! CTAATAGTGGACAATAGGAT+TGG - chr4_3:39228693-39228712 Msa0640510:intron 35.0%
! GTTTTGCAGTGTTGTAAAGT+AGG - chr4_3:39228872-39228891 Msa0640510:intron 35.0%
TTTGCAGTGTTGTAAAGTAG+GGG - chr4_3:39228874-39228893 Msa0640510:intron 35.0%
GTAAATAAGCATGTCCATTG+TGG + chr4_3:39229410-39229429 None:intergenic 35.0%
CGTTATTATGAAGGAAGTCA+AGG + chr4_3:39229480-39229499 None:intergenic 35.0%
TGACTTCCTTCATAATAACG+AGG - chr4_3:39229480-39229499 Msa0640510:intron 35.0%
ATGTTGCCTCGTTATTATGA+AGG + chr4_3:39229489-39229508 None:intergenic 35.0%
TTTCGGTTAATTCAATCACC+AGG - chr4_3:39229524-39229543 Msa0640510:intron 35.0%
AACTGTGAAATGAACAACCT+TGG + chr4_3:39229834-39229853 None:intergenic 35.0%
CATCTTACCTTTATTCCAGA+AGG + chr4_3:39229895-39229914 None:intergenic 35.0%
! AAAGCTATTGATTGGTGAAG+GGG + chr4_3:39230195-39230214 None:intergenic 35.0%
! CTAAAGCTATTGATTGGTGA+AGG + chr4_3:39230197-39230216 None:intergenic 35.0%
!! ATAGCTTTAGTTAAGCGATC+AGG - chr4_3:39230207-39230226 Msa0640510:intron 35.0%
!! ATTGGTGTTTTAAATGTGGG+AGG + chr4_3:39230251-39230270 None:intergenic 35.0%
ATTTATCCTTCCAGAGCTAT+TGG + chr4_3:39230269-39230288 None:intergenic 35.0%
ACCCATGTTAAAATCACATG+AGG + chr4_3:39230595-39230614 None:intergenic 35.0%
!! TCATGTGATTTTAACATGGG+TGG - chr4_3:39230594-39230613 Msa0640510:intron 35.0%
GTCCCAACAAAAATAAACCA+GGG - chr4_3:39230715-39230734 Msa0640510:intron 35.0%
!!! CATCCCTGGTTTATTTTTGT+TGG + chr4_3:39230721-39230740 None:intergenic 35.0%
AAATAAACCAGGGATGAACA+TGG - chr4_3:39230725-39230744 Msa0640510:intron 35.0%
TAAATATCCATGTTCATCCC+TGG + chr4_3:39230735-39230754 None:intergenic 35.0%
GATCTGTGGATAAGCATAAA+TGG - chr4_3:39230760-39230779 Msa0640510:intron 35.0%
TGTGGATAAGCATAAATGGT+TGG - chr4_3:39230764-39230783 Msa0640510:intron 35.0%
GGAAGTGAAATAAAACTGGA+AGG - chr4_3:39230878-39230897 Msa0640510:intron 35.0%
! GAGAACACATGTACTTTTGA+AGG + chr4_3:39231173-39231192 None:intergenic 35.0%
! CAAAAGTACATGTGTTCTCT+TGG - chr4_3:39231174-39231193 Msa0640510:intron 35.0%
TGTTCTCTTGGAAGTTCTTA+TGG - chr4_3:39231186-39231205 Msa0640510:intron 35.0%
TCTTGGAAGTTCTTATGGAT+AGG - chr4_3:39231191-39231210 Msa0640510:intron 35.0%
AGGTGTGGTATAGGATTTAT+AGG - chr4_3:39231336-39231355 Msa0640510:intron 35.0%
TGTGGTATAGGATTTATAGG+TGG - chr4_3:39231339-39231358 Msa0640510:intron 35.0%
! GATTTTGTTGGGCTTTTTGA+TGG - chr4_3:39231389-39231408 Msa0640510:intron 35.0%
TAGATGGGAGAGTTAAGATT+AGG - chr4_3:39231423-39231442 Msa0640510:intron 35.0%
TGGAAAACACAAGGTCATTA+CGG + chr4_3:39231488-39231507 None:intergenic 35.0%
!!! TCCGTGGTTTTGGTTTTTTT+AGG - chr4_3:39231554-39231573 Msa0640510:intron 35.0%
AGTGATAACAAGGAGAATCA+AGG + chr4_3:39231585-39231604 None:intergenic 35.0%
! TCCTTGTTATCACTATGAGT+GGG - chr4_3:39231591-39231610 Msa0640510:intron 35.0%
!! TTTTGTTTATCTGTTGGTGG+AGG - chr4_3:39231810-39231829 Msa0640510:intron 35.0%
! TTTGTTTATCTGTTGGTGGA+GGG - chr4_3:39231811-39231830 Msa0640510:intron 35.0%
!!! TGGGGCTTTTTTAGTTCTTT+TGG - chr4_3:39231858-39231877 Msa0640510:CDS 35.0%
!! TTAGTTCTTTTGGTCACCTT+TGG - chr4_3:39231868-39231887 Msa0640510:CDS 35.0%
!! AGTAGCATTTTGTTATCGGA+TGG + chr4_3:39232116-39232135 None:intergenic 35.0%
!! AGCGAGTAGCATTTTGTTAT+CGG + chr4_3:39232120-39232139 None:intergenic 35.0%
! TCTGAATCTTTTCATGAGCT+TGG + chr4_3:39232199-39232218 None:intergenic 35.0%
! CAATTTTCAGTATTCGCCAT+CGG + chr4_3:39232224-39232243 None:intergenic 35.0%
!! TGGTAGTTGATAATTGAGTG+AGG - chr4_3:39232688-39232707 Msa0640510:intron 35.0%
!! AGAGGCATTACTGTTTAAAC+TGG - chr4_3:39232764-39232783 Msa0640510:intron 35.0%
! GAGGCATTACTGTTTAAACT+GGG - chr4_3:39232765-39232784 Msa0640510:intron 35.0%
AGTTACCAAGATAATCTGCA+TGG + chr4_3:39232889-39232908 None:intergenic 35.0%
AAAAAGACCCATTTAGATGC+AGG + chr4_3:39233167-39233186 None:intergenic 35.0%
! TATACTTGTTGAACGAAAGG+GGG - chr4_3:39233332-39233351 Msa0640510:intron 35.0%
CTGCTTCATGTTATTATGCT+GGG - chr4_3:39233451-39233470 Msa0640510:intron 35.0%
! TGGATTATGTTTCTGTGTCT+TGG - chr4_3:39233554-39233573 Msa0640510:intron 35.0%
!! AAGGTTTTTCGATGGTTTGA+TGG - chr4_3:39233598-39233617 Msa0640510:intron 35.0%
ACACATGAGTTCATCAATGA+TGG + chr4_3:39233707-39233726 None:intergenic 35.0%
TGAACTCATGTGTTGTAGAA+TGG - chr4_3:39233714-39233733 Msa0640510:CDS 35.0%
!!! GTAGAATGGCTTATTTTGCA+TGG - chr4_3:39233728-39233747 Msa0640510:CDS 35.0%
CATTATCAGTCACAAACTCT+TGG - chr4_3:39233760-39233779 Msa0640510:CDS 35.0%
CAACAGCGAAAAACTAATCC+AGG - chr4_3:39227731-39227750 Msa0640510:three_prime_UTR 40.0%
! GATGGATTCGGCAAGATTAA+GGG + chr4_3:39227799-39227818 None:intergenic 40.0%
TAAGTCGTTAACCGCGAAAA+TGG - chr4_3:39228067-39228086 Msa0640510:exon 40.0%
TTGCACGAAGTAACTTATCG+CGG - chr4_3:39228168-39228187 Msa0640510:intron 40.0%
TGACATAGAGACGTTTGGAT+TGG - chr4_3:39228254-39228273 Msa0640510:intron 40.0%
CTTATTTCCGTCAGCTATCT+AGG - chr4_3:39228529-39228548 Msa0640510:intron 40.0%
AAGCTATCCTAGATAGCTGA+CGG + chr4_3:39228539-39228558 None:intergenic 40.0%
AAGCAAGCTATGTATGGACT+AGG + chr4_3:39228655-39228674 None:intergenic 40.0%
AAGGCAAAGCAAGCTATGTA+TGG + chr4_3:39228661-39228680 None:intergenic 40.0%
GCTTGCTTTGCCTTTAAATG+GGG - chr4_3:39228667-39228686 Msa0640510:intron 40.0%
ATATGTGTGCTATAGCGTAG+CGG - chr4_3:39228899-39228918 Msa0640510:intron 40.0%
GCAACACTATAGCATTGTAG+TGG - chr4_3:39228990-39229009 Msa0640510:intron 40.0%
CTTTGTGACAAACATGTGTC+TGG - chr4_3:39229095-39229114 Msa0640510:intron 40.0%
! TTTACAGAAATGGACTCTCG+AGG - chr4_3:39229257-39229276 Msa0640510:intron 40.0%
ATGTCCATTGTGGCATTTAC+AGG + chr4_3:39229400-39229419 None:intergenic 40.0%
ATGCCTGCAAAGACTACTTT+CGG - chr4_3:39229507-39229526 Msa0640510:intron 40.0%
TAACCGAAAGTAGTCTTTGC+AGG + chr4_3:39229513-39229532 None:intergenic 40.0%
! CTCATGTGATGGGAATGTAA+GGG + chr4_3:39229622-39229641 None:intergenic 40.0%
! ACTCATGTGATGGGAATGTA+AGG + chr4_3:39229623-39229642 None:intergenic 40.0%
CTTTGCCTGTTTATTGTCAC+AGG - chr4_3:39229676-39229695 Msa0640510:intron 40.0%
ATGTGCCTGTGACAATAAAC+AGG + chr4_3:39229684-39229703 None:intergenic 40.0%
AGTTTCATGGAAAGTCCTTC+TGG - chr4_3:39229877-39229896 Msa0640510:intron 40.0%
!! GGAAAGTCCTTCTGGAATAA+AGG - chr4_3:39229885-39229904 Msa0640510:intron 40.0%
ACTGCCTAATGCCTATTCAT+TGG - chr4_3:39229969-39229988 Msa0640510:intron 40.0%
!! CATTCACAGCTAAGGTATTG+AGG + chr4_3:39230077-39230096 None:intergenic 40.0%
!! AAAACACCAATAGCTCTGGA+AGG - chr4_3:39230260-39230279 Msa0640510:intron 40.0%
!! AGCTCTGGAAGGATAAATTG+TGG - chr4_3:39230271-39230290 Msa0640510:intron 40.0%
ACATACATTAGCAATGCCTG+TGG + chr4_3:39230364-39230383 None:intergenic 40.0%
GCATTTGACATGCACATCAT+AGG - chr4_3:39230561-39230580 Msa0640510:intron 40.0%
CTTGTGCTGGGGAATTAATA+TGG - chr4_3:39230693-39230712 Msa0640510:intron 40.0%
GGTCCCAACAAAAATAAACC+AGG - chr4_3:39230714-39230733 Msa0640510:intron 40.0%
AGTACGTGCTTGATACTAGA+TGG - chr4_3:39230857-39230876 Msa0640510:intron 40.0%
! TGCTAGTTTCGTCAATGACT+TGG - chr4_3:39231144-39231163 Msa0640510:intron 40.0%
! GCTAGTTTCGTCAATGACTT+GGG - chr4_3:39231145-39231164 Msa0640510:intron 40.0%
!! CAACCAGAGCTAATTTGTTC+AGG - chr4_3:39231218-39231237 Msa0640510:intron 40.0%
! AAGATAATCAACCGACTCAG+TGG + chr4_3:39231291-39231310 None:intergenic 40.0%
! TTTTGCCGAGCGATTTTGTT+GGG - chr4_3:39231378-39231397 Msa0640510:intron 40.0%
AAAAGCCCAACAAAATCGCT+CGG + chr4_3:39231386-39231405 None:intergenic 40.0%
ATGGGAGAGTTAAGATTAGG+AGG - chr4_3:39231426-39231445 Msa0640510:intron 40.0%
TGGGAGAGTTAAGATTAGGA+GGG - chr4_3:39231427-39231446 Msa0640510:intron 40.0%
GGAAAACACAAGGTCATTAC+GGG + chr4_3:39231487-39231506 None:intergenic 40.0%
! TGACCTTGTGTTTTCCAGTA+CGG - chr4_3:39231491-39231510 Msa0640510:intron 40.0%
ATAAGATCCAATTCTCTCCG+TGG - chr4_3:39231538-39231557 Msa0640510:intron 40.0%
! CTCCTTGTTATCACTATGAG+TGG - chr4_3:39231590-39231609 Msa0640510:intron 40.0%
ACCCACTCATAGTGATAACA+AGG + chr4_3:39231595-39231614 None:intergenic 40.0%
TTATCACTATGAGTGGGTAG+TGG - chr4_3:39231597-39231616 Msa0640510:intron 40.0%
TTTCCTGTGTCTTGTCTTTC+TGG - chr4_3:39231698-39231717 Msa0640510:intron 40.0%
!!! TTCCTTTGTTTTTGGGCACT+AGG - chr4_3:39231743-39231762 Msa0640510:intron 40.0%
!!! TTTGTTTTTGGGCACTAGGA+GGG - chr4_3:39231747-39231766 Msa0640510:intron 40.0%
GCCCCATAAGAATAACGAAA+AGG + chr4_3:39231844-39231863 None:intergenic 40.0%
CAACGAAAAAGGAACACCAA+AGG + chr4_3:39231887-39231906 None:intergenic 40.0%
! TGTGAGTCTGAAGTGGTTAT+AGG - chr4_3:39232068-39232087 Msa0640510:intron 40.0%
AATGCTACTCGCTTCTAATG+TGG - chr4_3:39232127-39232146 Msa0640510:intron 40.0%
TCGCTTCTAATGTGGAACAA+GGG - chr4_3:39232135-39232154 Msa0640510:intron 40.0%
TGAAAAGATTCAGAAGCCGA+TGG - chr4_3:39232205-39232224 Msa0640510:intron 40.0%
! TGAGTAAGCCTATCTAAAGC+TGG - chr4_3:39232526-39232545 Msa0640510:intron 40.0%
! AAGCCTATCTAAAGCTGGAA+CGG - chr4_3:39232531-39232550 Msa0640510:intron 40.0%
CAGAAGCTCACAACTACATA+CGG + chr4_3:39232606-39232625 None:intergenic 40.0%
GATGCTATGATCTCTTTGTC+TGG - chr4_3:39232646-39232665 Msa0640510:intron 40.0%
ATGATCTCTTTGTCTGGCAT+TGG - chr4_3:39232652-39232671 Msa0640510:intron 40.0%
!! GCATTGGTTTGTTAGCACAA+TGG - chr4_3:39232668-39232687 Msa0640510:intron 40.0%
! TTGGTAACTCATCCTAGAAC+TGG - chr4_3:39232900-39232919 Msa0640510:intron 40.0%
ATCCTAGAACTGGTGATCTT+CGG - chr4_3:39232910-39232929 Msa0640510:intron 40.0%
AAGAATCCACTCTATACACC+TGG - chr4_3:39232978-39232997 Msa0640510:intron 40.0%
GCATAGCAAAAGTAGGGAAT+TGG - chr4_3:39233251-39233270 Msa0640510:intron 40.0%
CGCAAAATTTCGTCTTCAAC+AGG + chr4_3:39233381-39233400 None:intergenic 40.0%
! GTTGAAGACGAAATTTTGCG+AGG - chr4_3:39233381-39233400 Msa0640510:intron 40.0%
GCTGCTTCATGTTATTATGC+TGG - chr4_3:39233450-39233469 Msa0640510:intron 40.0%
ACATAAACACAAACAACGCG+AGG + chr4_3:39233791-39233810 None:intergenic 40.0%
TCTAAACCGTGAGCTTATTG+CGG - chr4_3:39233991-39234010 Msa0640510:intron 40.0%
AGATATCCGCAATAAGCTCA+CGG + chr4_3:39234000-39234019 None:intergenic 40.0%
! TTTTCGCTGTTGACGGAAGT+CGG + chr4_3:39227723-39227742 None:intergenic 45.0%
!! CGGCAAGATTAAGGGCATTA+TGG + chr4_3:39227791-39227810 None:intergenic 45.0%
! GGATGGATTCGGCAAGATTA+AGG + chr4_3:39227800-39227819 None:intergenic 45.0%
AAAATGCTTATGGGCCCGTT+CGG + chr4_3:39228473-39228492 None:intergenic 45.0%
CTATTAGGGGCCCCATTTAA+AGG + chr4_3:39228680-39228699 None:intergenic 45.0%
TTAAATGGGGCCCCTAATAG+TGG - chr4_3:39228680-39228699 Msa0640510:intron 45.0%
AAAAATCGGTATCCGGCACA+AGG + chr4_3:39228738-39228757 None:intergenic 45.0%
TGAGCCTGTAAATGCCACAA+TGG - chr4_3:39229393-39229412 Msa0640510:intron 45.0%
TACGCCAAGGTTTCCTTTCT+CGG + chr4_3:39229797-39229816 None:intergenic 45.0%
TGAAATGAACAACCTTGGCC+AGG + chr4_3:39229829-39229848 None:intergenic 45.0%
AATGCCTGTGGATAAACAGG+GGG + chr4_3:39230352-39230371 None:intergenic 45.0%
CAATGCCTGTGGATAAACAG+GGG + chr4_3:39230353-39230372 None:intergenic 45.0%
GCAATGCCTGTGGATAAACA+GGG + chr4_3:39230354-39230373 None:intergenic 45.0%
AGCAATGCCTGTGGATAAAC+AGG + chr4_3:39230355-39230374 None:intergenic 45.0%
ACGCCTGAACAAATTAGCTC+TGG + chr4_3:39231224-39231243 None:intergenic 45.0%
GCTCAGTTTGTGCTCTTTGT+GGG - chr4_3:39231261-39231280 Msa0640510:intron 45.0%
CTCAGTTTGTGCTCTTTGTG+GGG - chr4_3:39231262-39231281 Msa0640510:intron 45.0%
AATCCTATACCACACCTCTG+AGG + chr4_3:39231333-39231352 None:intergenic 45.0%
GGATTTATAGGTGGTTAGGG+TGG - chr4_3:39231348-39231367 Msa0640510:intron 45.0%
TAGGTGGTTAGGGTGGTTAT+TGG - chr4_3:39231355-39231374 Msa0640510:intron 45.0%
! GTTTTGCCGAGCGATTTTGT+TGG - chr4_3:39231377-39231396 Msa0640510:intron 45.0%
!!! TGGGCTTTTTGATGGGTTAC+TGG - chr4_3:39231397-39231416 Msa0640510:intron 45.0%
!!! GGGCTTTTTGATGGGTTACT+GGG - chr4_3:39231398-39231417 Msa0640510:intron 45.0%
! ATGGGTTACTGGGCTTAGAT+GGG - chr4_3:39231408-39231427 Msa0640510:intron 45.0%
GGGAGAGTTAAGATTAGGAG+GGG - chr4_3:39231428-39231447 Msa0640510:intron 45.0%
!!! AGGAGGGGTTTTTAGTGATC+TGG - chr4_3:39231443-39231462 Msa0640510:intron 45.0%
!!! GGGTTTTTAGTGATCTGGTG+TGG - chr4_3:39231448-39231467 Msa0640510:intron 45.0%
! TCCAATTCTCTCCGTGGTTT+TGG - chr4_3:39231544-39231563 Msa0640510:intron 45.0%
ACCAAAACCACGGAGAGAAT+TGG + chr4_3:39231548-39231567 None:intergenic 45.0%
! TCTTGTCTTTCTGGTGGAGT+TGG - chr4_3:39231707-39231726 Msa0640510:intron 45.0%
CTCCTAGTGCCCAAAAACAA+AGG + chr4_3:39231748-39231767 None:intergenic 45.0%
!!! CTTTGTTTTTGGGCACTAGG+AGG - chr4_3:39231746-39231765 Msa0640510:intron 45.0%
CACTTCAGACTCACAAACGT+TGG + chr4_3:39232063-39232082 None:intergenic 45.0%
CAACGTTTGTGAGTCTGAAG+TGG - chr4_3:39232061-39232080 Msa0640510:intron 45.0%
CTCGCTTCTAATGTGGAACA+AGG - chr4_3:39232134-39232153 Msa0640510:intron 45.0%
CGCTTCTAATGTGGAACAAG+GGG - chr4_3:39232136-39232155 Msa0640510:intron 45.0%
!! AGAGTATTGCCAGTTTGCCA+AGG + chr4_3:39232165-39232184 None:intergenic 45.0%
CTGATGGGGAATGATGAGTA+GGG - chr4_3:39232419-39232438 Msa0640510:intron 45.0%
ATTATGAGTGGAGGGGATGT+AGG - chr4_3:39232453-39232472 Msa0640510:intron 45.0%
AGATAATCTGCATGGAGTCG+TGG + chr4_3:39232881-39232900 None:intergenic 45.0%
CGACTCCATGCAGATTATCT+TGG - chr4_3:39232881-39232900 Msa0640510:intron 45.0%
TCCTAGAACTGGTGATCTTC+GGG - chr4_3:39232911-39232930 Msa0640510:intron 45.0%
ATACACCTGGATCTCCTATC+AGG - chr4_3:39232991-39233010 Msa0640510:intron 45.0%
TGTTACCTGATAGGAGATCC+AGG + chr4_3:39232999-39233018 None:intergenic 45.0%
CTGTGTCTTGGAAGTTCATG+TGG - chr4_3:39233566-39233585 Msa0640510:intron 45.0%
ACGTTAGACCAGTATGTGAG+AGG - chr4_3:39233650-39233669 Msa0640510:intron 45.0%
ATGCAATGCCTCTCACATAC+TGG + chr4_3:39233661-39233680 None:intergenic 45.0%
GGCATTGCATAGAAGATGAG+TGG - chr4_3:39233671-39233690 Msa0640510:CDS 45.0%
CTGATCTCGACTCATTTCCC+CGG - chr4_3:39227675-39227694 Msa0640510:three_prime_UTR 50.0%
!! GGCCCCTAATAGTGGACAAT+AGG - chr4_3:39228688-39228707 Msa0640510:intron 50.0%
!! ACAATAGGATTGGTCCCCCT+GGG - chr4_3:39228703-39228722 Msa0640510:intron 50.0%
AACTATTCGCGACAGACCTG+TGG - chr4_3:39229350-39229369 Msa0640510:intron 50.0%
! TCTTTGTGCAGTGCCGAGAA+AGG - chr4_3:39229781-39229800 Msa0640510:intron 50.0%
! AGTGCCGAGAAAGGAAACCT+TGG - chr4_3:39229790-39229809 Msa0640510:intron 50.0%
GTGAAGGGGAGGAGAATGAA+GGG + chr4_3:39230181-39230200 None:intergenic 50.0%
! GCTATTGATTGGTGAAGGGG+AGG + chr4_3:39230192-39230211 None:intergenic 50.0%
! GTGGGAGGACTAGCAACTAT+TGG + chr4_3:39230236-39230255 None:intergenic 50.0%
TGTGGATAAACAGGGGGAAG+GGG + chr4_3:39230346-39230365 None:intergenic 50.0%
CTGTGGATAAACAGGGGGAA+GGG + chr4_3:39230347-39230366 None:intergenic 50.0%
ACATGGGTGGCTAGATCCAA+AGG - chr4_3:39230607-39230626 Msa0640510:intron 50.0%
CATGGGTGGCTAGATCCAAA+GGG - chr4_3:39230608-39230627 Msa0640510:intron 50.0%
ATGGGTGGCTAGATCCAAAG+GGG - chr4_3:39230609-39230628 Msa0640510:intron 50.0%
GTTAAGCACGTTCACCCCTT+TGG + chr4_3:39230626-39230645 None:intergenic 50.0%
AAGGGGTGAACGTGCTTAAC+AGG - chr4_3:39230626-39230645 Msa0640510:intron 50.0%
GGCGTGATAACTGATCTAGC+TGG - chr4_3:39231239-39231258 Msa0640510:intron 50.0%
GGCTCAGTTTGTGCTCTTTG+TGG - chr4_3:39231260-39231279 Msa0640510:intron 50.0%
! TAGCCTCAGAGGTGTGGTAT+AGG - chr4_3:39231327-39231346 Msa0640510:intron 50.0%
!! GATGGGTTACTGGGCTTAGA+TGG - chr4_3:39231407-39231426 Msa0640510:intron 50.0%
GTGCCGTACTGGAAAACACA+AGG + chr4_3:39231497-39231516 None:intergenic 50.0%
TTCCAGTACGGCACTAGATG+TGG - chr4_3:39231503-39231522 Msa0640510:intron 50.0%
GGCACTAGATGTGGAGGAAT+TGG - chr4_3:39231512-39231531 Msa0640510:intron 50.0%
GGAGCAAGTAGCAGTATGTG+CGG - chr4_3:39231635-39231654 Msa0640510:intron 50.0%
GAGCAAGTAGCAGTATGTGC+GGG - chr4_3:39231636-39231655 Msa0640510:intron 50.0%
AGCAAGTAGCAGTATGTGCG+GGG - chr4_3:39231637-39231656 Msa0640510:intron 50.0%
CCACCAGAAAGACAAGACAC+AGG + chr4_3:39231704-39231723 None:intergenic 50.0%
CCTGTGTCTTGTCTTTCTGG+TGG - chr4_3:39231701-39231720 Msa0640510:intron 50.0%
! TCTTTCTGGTGGAGTTGGCT+TGG - chr4_3:39231712-39231731 Msa0640510:intron 50.0%
TGTGGAACAAGGGGAAACCT+TGG - chr4_3:39232145-39232164 Msa0640510:intron 50.0%
AAGGGGAAACCTTGGCAAAC+TGG - chr4_3:39232153-39232172 Msa0640510:intron 50.0%
GCTGATGGGGAATGATGAGT+AGG - chr4_3:39232418-39232437 Msa0640510:intron 50.0%
GGATGTAGGAAAGCCTGTGA+GGG - chr4_3:39232467-39232486 Msa0640510:intron 50.0%
!! CCTCCGTTCCAGCTTTAGAT+AGG + chr4_3:39232537-39232556 None:intergenic 50.0%
! CCTATCTAAAGCTGGAACGG+AGG - chr4_3:39232534-39232553 Msa0640510:intron 50.0%
TCCCGAAGATCACCAGTTCT+AGG + chr4_3:39232915-39232934 None:intergenic 50.0%
GGAGATCCAGGTGTATAGAG+TGG + chr4_3:39232987-39233006 None:intergenic 50.0%
ATTTCCCCGGAAAACGCCAC+CGG - chr4_3:39227688-39227707 Msa0640510:three_prime_UTR 55.0%
! TGAACTCCGGTGGCGTTTTC+CGG + chr4_3:39227697-39227716 None:intergenic 55.0%
CCATTGTTTCCCGATGCCGT+CGG + chr4_3:39227924-39227943 None:intergenic 55.0%
! CGACGGCATCGGGAAACAAT+GGG - chr4_3:39227922-39227941 Msa0640510:three_prime_UTR 55.0%
! CCTGGTGGGATCCATTTTCG+CGG + chr4_3:39228081-39228100 None:intergenic 55.0%
!! GACAATAGGATTGGTCCCCC+TGG - chr4_3:39228702-39228721 Msa0640510:intron 55.0%
!! ATTGGTCCCCCTGGGTTAGT+CGG - chr4_3:39228711-39228730 Msa0640510:intron 55.0%
ACAAGGACCGACTAACCCAG+GGG + chr4_3:39228721-39228740 None:intergenic 55.0%
CACAAGGACCGACTAACCCA+GGG + chr4_3:39228722-39228741 None:intergenic 55.0%
CAGGTAACTGAGGTACGCCA+AGG + chr4_3:39229810-39229829 None:intergenic 55.0%
CTTGGCGTACCTCAGTTACC+TGG - chr4_3:39229808-39229827 Msa0640510:intron 55.0%
GTACCTCAGTTACCTGGCCA+AGG - chr4_3:39229814-39229833 Msa0640510:intron 55.0%
CAACCTTGGCCAGGTAACTG+AGG + chr4_3:39229820-39229839 None:intergenic 55.0%
GGAGGAGAATGAAGGGTCCA+AGG + chr4_3:39230174-39230193 None:intergenic 55.0%
GGTGAAGGGGAGGAGAATGA+AGG + chr4_3:39230182-39230201 None:intergenic 55.0%
GTGGATAAACAGGGGGAAGG+GGG + chr4_3:39230345-39230364 None:intergenic 55.0%
CCTGTGGATAAACAGGGGGA+AGG + chr4_3:39230348-39230367 None:intergenic 55.0%
CCTTCCCCCTGTTTATCCAC+AGG - chr4_3:39230345-39230364 Msa0640510:intron 55.0%
! TTGTGGGGTGTCCACTGAGT+CGG - chr4_3:39231277-39231296 Msa0640510:intron 55.0%
GTGATCTGGTGTGGACCATC+TGG - chr4_3:39231457-39231476 Msa0640510:intron 55.0%
! GTCATTACGGGCTGACCAGA+TGG + chr4_3:39231475-39231494 None:intergenic 55.0%
CTCCACATCTAGTGCCGTAC+TGG + chr4_3:39231508-39231527 None:intergenic 55.0%
CAGTACGGCACTAGATGTGG+AGG - chr4_3:39231506-39231525 Msa0640510:intron 55.0%
! ACTGCTACTTGCTCCAGCAG+AGG + chr4_3:39231630-39231649 None:intergenic 55.0%
GCAAGTAGCAGTATGTGCGG+GGG - chr4_3:39231638-39231657 Msa0640510:intron 55.0%
CAAGTAGCAGTATGTGCGGG+GGG - chr4_3:39231639-39231658 Msa0640510:intron 55.0%
!! GTTTTTGGGCACTAGGAGGG+AGG - chr4_3:39231750-39231769 Msa0640510:intron 55.0%
!!! GGCAGGCATGGGGTTTTGTT+TGG - chr4_3:39231771-39231790 Msa0640510:intron 55.0%
GGGATGTAGGAAAGCCTGTG+AGG - chr4_3:39232466-39232485 Msa0640510:intron 55.0%
AGGAAAGCCTGTGAGGGACA+AGG - chr4_3:39232473-39232492 Msa0640510:intron 55.0%
GGAAAGCCTGTGAGGGACAA+GGG - chr4_3:39232474-39232493 Msa0640510:intron 55.0%
ACCTTTCCCTTGTCCCTCAC+AGG + chr4_3:39232483-39232502 None:intergenic 55.0%
! AACTCCGGTGGCGTTTTCCG+GGG + chr4_3:39227695-39227714 None:intergenic 60.0%
! GAACTCCGGTGGCGTTTTCC+GGG + chr4_3:39227696-39227715 None:intergenic 60.0%
AAGTCGGCGATGAACTCCGG+TGG + chr4_3:39227707-39227726 None:intergenic 60.0%
CGGAAGTCGGCGATGAACTC+CGG + chr4_3:39227710-39227729 None:intergenic 60.0%
! CCGACGGCATCGGGAAACAA+TGG - chr4_3:39227921-39227940 Msa0640510:three_prime_UTR 60.0%
CCGCGAAAATGGATCCCACC+AGG - chr4_3:39228078-39228097 Msa0640510:CDS 60.0%
GCTTATGGGCCCGTTCGGAT+TGG + chr4_3:39228468-39228487 None:intergenic 60.0%
CAAGGACCGACTAACCCAGG+GGG + chr4_3:39228720-39228739 None:intergenic 60.0%
GCACAAGGACCGACTAACCC+AGG + chr4_3:39228723-39228742 None:intergenic 60.0%
!! GGGTTAGTCGGTCCTTGTGC+CGG - chr4_3:39228723-39228742 Msa0640510:intron 60.0%
CACTTGTGGGGTAGCCTCAG+AGG - chr4_3:39231316-39231335 Msa0640510:intron 60.0%
TATGTGCGGGGGGCTTGCAT+GGG - chr4_3:39231649-39231668 Msa0640510:intron 60.0%
ACTAGGAGGGAGGCAGGCAT+GGG - chr4_3:39231760-39231779 Msa0640510:intron 60.0%
GCCTGTGAGGGACAAGGGAA+AGG - chr4_3:39232479-39232498 Msa0640510:intron 60.0%
GTGGGGTAGCCTCAGAGGTG+TGG - chr4_3:39231321-39231340 Msa0640510:intron 65.0%
GTATGTGCGGGGGGCTTGCA+TGG - chr4_3:39231648-39231667 Msa0640510:intron 65.0%
TTGGGCACTAGGAGGGAGGC+AGG - chr4_3:39231754-39231773 Msa0640510:intron 65.0%
CACTAGGAGGGAGGCAGGCA+TGG - chr4_3:39231759-39231778 Msa0640510:intron 65.0%
CTAGGAGGGAGGCAGGCATG+GGG - chr4_3:39231761-39231780 Msa0640510:intron 65.0%
TTTCCCGATGCCGTCGGCGC+AGG + chr4_3:39227918-39227937 None:intergenic 70.0%
TCCGTCACCGCCTGCGCCGA+CGG - chr4_3:39227905-39227924 Msa0640510:three_prime_UTR 75.0%
! ACCGCCTGCGCCGACGGCAT+CGG - chr4_3:39227911-39227930 Msa0640510:three_prime_UTR 75.0%
! GCCGTCGGCGCAGGCGGTGA+CGG + chr4_3:39227909-39227928 None:intergenic 80.0%
! CCCGATGCCGTCGGCGCAGG+CGG + chr4_3:39227915-39227934 None:intergenic 80.0%
!! CCGCCTGCGCCGACGGCATC+GGG - chr4_3:39227912-39227931 Msa0640510:three_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 39227627 39234125 39227627 ID=Msa0640510;Name=Msa0640510
chr4_3 mRNA 39227627 39234125 39227627 ID=Msa0640510-mRNA-1;Parent=Msa0640510;Name=Msa0640510-mRNA-1;_AED=0.07;_eAED=0.07;_QI=142|1|1|1|0.75|0.6|5|443|169
chr4_3 exon 39227627 39228121 39227627 ID=Msa0640510-mRNA-1:exon:8856;Parent=Msa0640510-mRNA-1
chr4_3 exon 39228740 39228858 39228740 ID=Msa0640510-mRNA-1:exon:8855;Parent=Msa0640510-mRNA-1
chr4_3 exon 39231846 39231960 39231846 ID=Msa0640510-mRNA-1:exon:8854;Parent=Msa0640510-mRNA-1
chr4_3 exon 39233653 39233892 39233653 ID=Msa0640510-mRNA-1:exon:8853;Parent=Msa0640510-mRNA-1
chr4_3 exon 39234000 39234125 39234000 ID=Msa0640510-mRNA-1:exon:8852;Parent=Msa0640510-mRNA-1
chr4_3 five_prime_UTR 39234000 39234125 39234000 ID=Msa0640510-mRNA-1:five_prime_utr;Parent=Msa0640510-mRNA-1
chr4_3 five_prime_UTR 39233877 39233892 39233877 ID=Msa0640510-mRNA-1:five_prime_utr;Parent=Msa0640510-mRNA-1
chr4_3 CDS 39233653 39233876 39233653 ID=Msa0640510-mRNA-1:cds;Parent=Msa0640510-mRNA-1
chr4_3 CDS 39231846 39231960 39231846 ID=Msa0640510-mRNA-1:cds;Parent=Msa0640510-mRNA-1
chr4_3 CDS 39228740 39228858 39228740 ID=Msa0640510-mRNA-1:cds;Parent=Msa0640510-mRNA-1
chr4_3 CDS 39228070 39228121 39228070 ID=Msa0640510-mRNA-1:cds;Parent=Msa0640510-mRNA-1
chr4_3 three_prime_UTR 39227627 39228069 39227627 ID=Msa0640510-mRNA-1:three_prime_utr;Parent=Msa0640510-mRNA-1
Gene Sequence

>Msa0640510

ATGCAATTCTTTGGTGGTTCTGAGATAAGTCCGTCACCGCCTGCGCCGACGGCATCGGGAAACAATGGGCATATGTTGTATATGTTCAACAGGAATGGTATTTGCTTGCTTTATAGAGAGTGGAATCGTCCCCTTCATACTTTGAATGCTCAACAAGATCATAAGTTGATGTTTGGTTTGCTTTTTTCGCTTAAGTCGTTAACCGCGAAAATGGATCCCACCAGTGCCGAGAAAGGAAACCTTGGCGTACCTCAGTTACCTGGCCAAGGTTGTTCATTTCACAGTTTTCGCACTAATACATACAAACTTAGTTTCATGGAAAGTCCTTCTGGAATAAAGATTATCTTGGTAACTCATCCTAGAACTGGTGATCTTCGGGAATCCTTAAAGTACATCTACAATTTGTATGTTGAATATGTTGTCAAGAATCCACTCTATACACCTGGATCTCCTATCAGGTCTGAGCTGTTCAATACAACGTTAGACCAGTATGTGAGAGGCATTGCATAG
Protein sequence

>Msa0640510

MQFFGGSEISPSPPAPTASGNNGHMLYMFNRNGICLLYREWNRPLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTSAEKGNLGVPQLPGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYNLYVEYVVKNPLYTPGSPIRSELFNTTLDQYVRGIA*