AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0542480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0542480 MtrunA17_Chr4g0033461 95.127 985 35 1 1 985 1 972 0.0 1927
Msa0542480 MtrunA17_Chr2g0329341 69.169 999 244 6 1 985 1 949 0.0 1383
Msa0542480 MtrunA17_Chr4g0019461 42.591 1073 483 25 1 985 1 1028 0.0 792
Msa0542480 MtrunA17_Chr7g0257661 43.050 1036 487 19 2 985 6 990 0.0 781
Msa0542480 MtrunA17_Chr1g0192801 32.888 1049 588 21 1 985 1 997 2.14e-174 534
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0542480 AT1G05960.1 53.695 1015 407 15 1 985 1 982 0.0 998
Msa0542480 AT1G05960.3 53.695 1015 407 15 1 985 1 982 0.0 998
Msa0542480 AT1G05960.4 53.695 1015 407 15 1 985 1 982 0.0 998
Msa0542480 AT1G05960.2 52.413 1036 409 15 1 985 1 1003 0.0 984
Msa0542480 AT2G41830.1 41.966 1058 502 25 2 985 6 1025 0.0 771
Msa0542480 AT2G41830.2 38.793 928 456 25 132 985 1 890 0.0 580
Msa0542480 AT5G21080.1 54.528 508 222 4 1 500 1 507 0.0 573
Msa0542480 AT5G21080.1 37.232 419 209 13 583 982 635 1018 1.93e-52 200
Msa0542480 AT5G26850.4 35.015 1031 572 21 1 984 1 980 2.34e-178 545
Msa0542480 AT5G26850.3 35.015 1031 572 21 1 984 1 980 2.34e-178 545
Msa0542480 AT5G26850.1 35.015 1031 572 21 1 984 1 980 2.34e-178 545
Msa0542480 AT5G26850.2 35.015 1031 572 21 1 984 1 980 2.34e-178 545

Find 243 sgRNAs with CRISPR-Local

Find 623 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAGGGATGCTTTAATTAT+TGG 0.142650 4_1:-27575227 None:intergenic
CTGACTCTTGTGGCAGGGAC+TGG 0.143185 4_1:+27572068 Msa0542480:CDS
GTCTCTTGCTTTCTTCAATC+TGG 0.151994 4_1:+27573634 Msa0542480:CDS
CCAACTACAATTTCCTTCTT+TGG 0.186968 4_1:+27568486 Msa0542480:five_prime_UTR
TTATCTTCTGTTGTCCATTT+TGG 0.195586 4_1:+27572492 Msa0542480:CDS
AATGGGACCTCCATTGTTTA+TGG 0.219448 4_1:+27576352 Msa0542480:CDS
AACTAACTGTTGAATATATC+AGG 0.226689 4_1:-27575244 None:intergenic
AAAGCTTCAGTTGCAATAAT+TGG 0.226788 4_1:+27572610 Msa0542480:CDS
ATATGTTCAACTTACCTTCT+TGG 0.226797 4_1:-27574533 None:intergenic
CAGCCACAAATTATCCTTCT+TGG 0.232775 4_1:-27572048 None:intergenic
ATTCTCTGTGTGGCTGTTAA+AGG 0.237881 4_1:+27575110 Msa0542480:CDS
TCCTCTTTGGGAAATTCCTT+GGG 0.238244 4_1:-27572005 None:intergenic
CAGTGTGAGGCTCTTGTATC+AGG 0.239099 4_1:+27576868 Msa0542480:CDS
TGACTCTTGTGGCAGGGACT+GGG 0.253799 4_1:+27572069 Msa0542480:CDS
AACACCTCTTAGAATAATAA+TGG 0.269182 4_1:-27568341 None:intergenic
GGGAAATTCCTTGGGGTGAT+TGG 0.270431 4_1:-27571997 None:intergenic
TGAAAGCTGCTGGATGTTAA+TGG 0.286853 4_1:+27577666 Msa0542480:CDS
AGTTTCCCCTCTACCAATTA+AGG 0.292504 4_1:+27576978 Msa0542480:CDS
TGTTAAAGAGCCGTCCTCTT+TGG 0.296797 4_1:-27572018 None:intergenic
TAGCTGCAGTTTCCAGTATT+GGG 0.304149 4_1:+27572680 Msa0542480:CDS
AATCAATGGTCATCTGAAAA+AGG 0.312373 4_1:+27572323 Msa0542480:CDS
ATCAAAGTGCTTGACCAAAA+TGG 0.313251 4_1:-27572506 None:intergenic
GAGATTCATGTCTACATAAA+TGG 0.313458 4_1:-27577720 None:intergenic
GTCCTCTTTGGGAAATTCCT+TGG 0.314480 4_1:-27572006 None:intergenic
CTCCCTCATGAGCATTTCAT+TGG 0.314688 4_1:+27574509 Msa0542480:CDS
GCTTTCTTCAATCTGGGTTC+AGG 0.315779 4_1:+27573641 Msa0542480:CDS
AAATTTACCTCATCAAAATC+TGG 0.317492 4_1:-27576416 None:intergenic
GACAGATTTCCACTTGGTTC+AGG 0.319543 4_1:-27576554 None:intergenic
AAAGGCTTGCTTGTATAATA+TGG 0.324194 4_1:+27572229 Msa0542480:CDS
CTGTGGTTAGGTGCGTTTCA+TGG 0.325394 4_1:+27571697 Msa0542480:intron
TACATACATGTTCAATTTAG+AGG 0.325825 4_1:+27571468 Msa0542480:CDS
CCTCACACTGGTTCTTCATT+TGG 0.326955 4_1:-27576855 None:intergenic
CTGGGTTCAGGCAACATCTA+TGG 0.331394 4_1:+27573653 Msa0542480:CDS
TGAGCCAATTGACACAGTTT+AGG 0.338299 4_1:-27571499 None:intergenic
GTGTCAATTGGCTCAAGAAA+TGG 0.343671 4_1:+27571507 Msa0542480:CDS
ATAGGGTCTTAGTAGCAAAA+TGG 0.349194 4_1:+27569297 Msa0542480:intron
CCAATTCGTGTTTCGTGGTC+AGG 0.359383 4_1:-27573123 None:intergenic
ATAGATCATGTTAGTGACTT+TGG 0.359929 4_1:+27571947 Msa0542480:intron
GTTAAAGAGCCGTCCTCTTT+GGG 0.361240 4_1:-27572017 None:intergenic
TGGGGTGATTGGAGCTAGAT+TGG 0.362239 4_1:-27571986 None:intergenic
CTTGTATAATATGGTCAAAC+TGG 0.366128 4_1:+27572238 Msa0542480:CDS
CTGACCTCATTAAGCACTTA+AGG 0.367101 4_1:+27572641 Msa0542480:CDS
TAGGGTCTTAGTAGCAAAAT+GGG 0.369637 4_1:+27569298 Msa0542480:intron
TCCACAGACATCCAGTTACT+TGG 0.369843 4_1:+27574458 Msa0542480:intron
TGTGGCTTCGGCAGCTTTGA+TGG 0.372597 4_1:+27576517 Msa0542480:CDS
TGCAGCTATTAAGTCACTTT+CGG 0.379707 4_1:+27575500 Msa0542480:CDS
GACCAAATATTCAAAATTAC+CGG 0.380879 4_1:+27575575 Msa0542480:CDS
TAGGGGCAGAACAGATCAAT+AGG 0.383284 4_1:+27573268 Msa0542480:CDS
TCTTACGAAAGCCAAGTAAC+TGG 0.383620 4_1:-27574469 None:intergenic
TGTCAATTGGCTCAAGAAAT+GGG 0.383681 4_1:+27571508 Msa0542480:CDS
TCTCTTGCTTTCTTCAATCT+GGG 0.383800 4_1:+27573635 Msa0542480:CDS
TGGTTCTTCATTTGGTCATA+AGG 0.384205 4_1:-27576847 None:intergenic
TGTGCAGACACTGGAGTATT+CGG 0.387464 4_1:+27577517 Msa0542480:intron
AGCTTTCAAGAATTTATCAT+AGG 0.388126 4_1:-27577651 None:intergenic
CCTGACCACGAAACACGAAT+TGG 0.390664 4_1:+27573123 Msa0542480:CDS
CTTAGAATAATAATGGGAAT+GGG 0.395612 4_1:-27568334 None:intergenic
GAATCAGAGAAGATAATCTA+TGG 0.396697 4_1:+27575459 Msa0542480:CDS
TATTCCTAAACTGTGTCAAT+TGG 0.399534 4_1:+27571495 Msa0542480:CDS
TCATAAGGTACAGGATTTGC+AGG 0.399980 4_1:-27576832 None:intergenic
AATTGATGAAACAGAGCATC+AGG 0.400197 4_1:-27573081 None:intergenic
CTGACCACGAAACACGAATT+GGG 0.400617 4_1:+27573124 Msa0542480:CDS
GGGAACTCAATCTGAGCAAC+TGG 0.401860 4_1:-27576395 None:intergenic
TTAGCTGCAGTTTCCAGTAT+TGG 0.405516 4_1:+27572679 Msa0542480:CDS
ATACTCATCATTCCCAATAC+TGG 0.405693 4_1:-27572692 None:intergenic
GATAAATTCTTGAAAGCTGC+TGG 0.405792 4_1:+27577656 Msa0542480:CDS
ATCACATCTTTCAATGGACT+TGG 0.413254 4_1:+27571727 Msa0542480:CDS
AGGACCCATCCTTGATTTGA+TGG 0.413478 4_1:+27572857 Msa0542480:CDS
GTAGTTTATTAGAGATTGTT+CGG 0.415919 4_1:+27571007 Msa0542480:CDS
ATTCCCATTATTATTCTAAG+AGG 0.421988 4_1:+27568337 Msa0542480:five_prime_UTR
GATTAACGCTTAAAATCGTC+AGG 0.425004 4_1:-27576607 None:intergenic
TTGTTTCTAGATTGTGGCTT+CGG 0.428600 4_1:+27576505 Msa0542480:intron
GATTTGCGTAATGAAGTCTT+TGG 0.428917 4_1:+27570430 Msa0542480:CDS
TTTCCGATGCTCTAAATCTT+GGG 0.429222 4_1:+27573367 Msa0542480:CDS
CTGCTAAAGATCCGGCATAT+TGG 0.430399 4_1:+27572204 Msa0542480:CDS
TCATCAATTGCTCCTGGTGA+TGG 0.432853 4_1:+27573095 Msa0542480:CDS
TCGTTCTAGCTCGAGACAAC+CGG 0.435337 4_1:+27569381 Msa0542480:CDS
ACAGATGAAATCAGGATCAT+AGG 0.437523 4_1:+27571051 Msa0542480:CDS
GGTACAGGATTTGCAGGAAT+GGG 0.439740 4_1:-27576826 None:intergenic
CTCAGGTAAATTGCCTGTCT+TGG 0.441203 4_1:-27575198 None:intergenic
ACACCTCTTAGAATAATAAT+GGG 0.441355 4_1:-27568340 None:intergenic
TTGAGCTTGTCGATGATGTC+AGG 0.442296 4_1:+27575418 Msa0542480:CDS
TTAATTATTGGAATTAGCTC+AGG 0.445901 4_1:-27575215 None:intergenic
CTGTTAACAGCACAATTTGT+CGG 0.446161 4_1:+27568305 Msa0542480:five_prime_UTR
TTCATTTGGTCATAAGGTAC+AGG 0.451138 4_1:-27576841 None:intergenic
CCCATTGGATATGCATCATC+AGG 0.452179 4_1:-27576335 None:intergenic
TACTGAACTTCAATCTGCCT+TGG 0.453317 4_1:+27572723 Msa0542480:CDS
GACTCTTGTGGCAGGGACTG+GGG 0.454897 4_1:+27572070 Msa0542480:CDS
GCTTTGATGGACGAAGAGAC+TGG 0.457425 4_1:+27576530 Msa0542480:CDS
TTGTGGCTGACTCTTGTGGC+AGG 0.467015 4_1:+27572062 Msa0542480:CDS
TCTTAGAATAATAATGGGAA+TGG 0.468267 4_1:-27568335 None:intergenic
CTTATATTCTCTGCCAAGAC+AGG 0.472578 4_1:+27575185 Msa0542480:CDS
AAAATTCTTATCGTCATGTA+AGG 0.472661 4_1:+27570483 Msa0542480:CDS
TTCTTGTGATATGACACGTT+AGG 0.474759 4_1:-27572972 None:intergenic
GCGCCCCAATTCGTGTTTCG+TGG 0.474866 4_1:-27573128 None:intergenic
AAACTCGAACAGATGAAATC+AGG 0.476249 4_1:+27571043 Msa0542480:CDS
GAACAACAGGTTGGGGATGT+AGG 0.477228 4_1:+27572837 Msa0542480:intron
AACTTCTTGTAACGCTTCAC+CGG 0.477865 4_1:-27569400 None:intergenic
TTGTCTCATCGCCACATAGT+AGG 0.477928 4_1:+27577786 Msa0542480:three_prime_UTR
TGTTAACAGCACAATTTGTC+GGG 0.483672 4_1:+27568306 Msa0542480:five_prime_UTR
GTCACTTTCGGCCGTAGAGT+TGG 0.486619 4_1:+27575512 Msa0542480:CDS
GCTTTACGTCTCCGTTCAGC+TGG 0.486622 4_1:+27571544 Msa0542480:CDS
TGTGGTTAGGTGCGTTTCAT+GGG 0.486827 4_1:+27571698 Msa0542480:intron
GCTTTCAAGAATTTATCATA+GGG 0.487556 4_1:-27577650 None:intergenic
GATTGTTGTTCTTGCTACAA+TGG 0.492747 4_1:-27572910 None:intergenic
CGTTAATCAACTCTTAGAAT+CGG 0.495438 4_1:+27576622 Msa0542480:CDS
CTCTGTGTGGCTGTTAAAGG+AGG 0.495584 4_1:+27575113 Msa0542480:CDS
AATTTATCATAGGGGCTGGC+AGG 0.496112 4_1:-27577641 None:intergenic
CTTGGAGCAAATATGTTACA+AGG 0.498122 4_1:+27570408 Msa0542480:CDS
CCAAAGAAGGAAATTGTAGT+TGG 0.499909 4_1:-27568486 None:intergenic
TATGCAGATTACTGATAACT+TGG 0.503042 4_1:+27570390 Msa0542480:intron
CATCCTTGATTTGATGGCTG+TGG 0.503859 4_1:+27572863 Msa0542480:CDS
CAAGAATTTATCATAGGGGC+TGG 0.506399 4_1:-27577645 None:intergenic
TTTCGTAAGATGTTTCCAAC+TGG 0.507563 4_1:+27574482 Msa0542480:CDS
AGTGACTTTGGAGAATTACA+TGG 0.508157 4_1:+27571959 Msa0542480:CDS
ATACTGACCTTAATTGGTAG+AGG 0.508185 4_1:-27576985 None:intergenic
TCATCGACAAGCTCAAGAAA+AGG 0.509001 4_1:-27575411 None:intergenic
TCTTGTGATATGACACGTTA+GGG 0.510444 4_1:-27572971 None:intergenic
TGTCGATGATGTCAGGCTAC+AGG 0.515098 4_1:+27575425 Msa0542480:CDS
TCTGTTTCATCAATTGCTCC+TGG 0.517320 4_1:+27573089 Msa0542480:CDS
GAAAAGCTGTAAACACGGTA+TGG 0.518094 4_1:-27573348 None:intergenic
CAGCAGAGGTTGCCACAGGC+AGG 0.518782 4_1:-27569343 None:intergenic
CATAAAGAAACAACTTGCAC+AGG 0.518963 4_1:+27576304 Msa0542480:CDS
CAGGGATACTGCTAAAGATC+CGG 0.519659 4_1:+27572196 Msa0542480:intron
CAGTTACGCATCAACATCGT+TGG 0.522267 4_1:-27568285 None:intergenic
GGTCAGGATGAGCCATCACC+AGG 0.522671 4_1:-27573107 None:intergenic
CACAGCCATCAAATCAAGGA+TGG 0.524628 4_1:-27572862 None:intergenic
CCTGATGATGCATATCCAAT+GGG 0.525211 4_1:+27576335 Msa0542480:CDS
CAGGAGGTCTCTATTTACCT+TGG 0.527634 4_1:+27575151 Msa0542480:CDS
AGGTACAGGATTTGCAGGAA+TGG 0.529133 4_1:-27576827 None:intergenic
CAGTCTGACAGATTTCCACT+TGG 0.530024 4_1:-27576560 None:intergenic
GTTAGACCATAAAACAATGA+TGG 0.531776 4_1:+27573197 Msa0542480:CDS
TCCTGATGATGCATATCCAA+TGG 0.532704 4_1:+27576334 Msa0542480:CDS
ATAATATTAATCTGAAGGAT+AGG 0.533027 4_1:-27572550 None:intergenic
GGTTACATACACTTCAATCA+TGG 0.534526 4_1:-27577699 None:intergenic
TTTATTGTTCACTCGTTCAA+AGG 0.535348 4_1:+27573725 Msa0542480:CDS
TACTGACCTTAATTGGTAGA+GGG 0.537518 4_1:-27576984 None:intergenic
ATAAACAATGGAGGTCCCAT+TGG 0.537727 4_1:-27576350 None:intergenic
AGGAGGGTTGTGCCTGCCTG+TGG 0.537862 4_1:+27569331 Msa0542480:CDS
CTTTGATGGACGAAGAGACT+GGG 0.537961 4_1:+27576531 Msa0542480:CDS
GAAGCGTTACAAGAAGTTGT+TGG 0.538026 4_1:+27569405 Msa0542480:CDS
GCCATAGCCTCAAAATTCGC+CGG 0.538194 4_1:-27573684 None:intergenic
ACTACTGCCCCTCCTTCCAC+AGG 0.538901 4_1:-27573294 None:intergenic
AGCTGTAAACACGGTATGGA+AGG 0.539297 4_1:-27573344 None:intergenic
CCATAGCCTCAAAATTCGCC+GGG 0.542119 4_1:-27573683 None:intergenic
AATTTACCTCATCAAAATCT+GGG 0.542840 4_1:-27576415 None:intergenic
TGAGAGCCTCTTGATTCAGC+AGG 0.542874 4_1:+27573236 Msa0542480:CDS
AGCTTTCCTGCTGAATCAAG+AGG 0.543777 4_1:-27573242 None:intergenic
TGAGCAATCACATCTTTCAA+TGG 0.544357 4_1:+27571721 Msa0542480:CDS
ACATACATGTTCAATTTAGA+GGG 0.550480 4_1:+27571469 Msa0542480:CDS
AGCATTTCATTGGACCAAGA+AGG 0.553364 4_1:+27574519 Msa0542480:CDS
AACATCTATGGACAATGGCC+CGG 0.554920 4_1:+27573665 Msa0542480:CDS
TCTCCAAGAAGGATAATTTG+TGG 0.557351 4_1:+27572045 Msa0542480:CDS
AGGGATAAGTTGTCATGCAG+TGG 0.557459 4_1:-27577855 None:intergenic
CCTCTTTGGGAAATTCCTTG+GGG 0.558009 4_1:-27572004 None:intergenic
ACACCACAGCCATCAAATCA+AGG 0.559488 4_1:-27572866 None:intergenic
TTCGGAAGGCGATCTGAAGT+TGG 0.560737 4_1:+27577535 Msa0542480:CDS
CTAATGCTCTAGTCTCCTGC+TGG 0.560946 4_1:-27576930 None:intergenic
GTGGTAGTCTCAAAGAATGT+TGG 0.562576 4_1:-27577619 None:intergenic
TTTGGAAACCGCACGGCAAG+TGG 0.564174 4_1:+27576795 Msa0542480:CDS
TTAAATTTAAAATAGACAGA+TGG 0.564230 4_1:+27571445 Msa0542480:intron
TTTCCCAAGATTTAGAGCAT+CGG 0.566217 4_1:-27573370 None:intergenic
TGTGGCTGACTCTTGTGGCA+GGG 0.566984 4_1:+27572063 Msa0542480:CDS
TAATATGGTCAAACTGGCAA+GGG 0.567973 4_1:+27572244 Msa0542480:CDS
ATAGGAAACCTGTGGAAGGA+GGG 0.569341 4_1:+27573286 Msa0542480:CDS
TTTAACAGATATCTCCAAGA+AGG 0.573391 4_1:+27572034 Msa0542480:CDS
TAAAACAATGATGGCTGAGA+AGG 0.574833 4_1:+27573206 Msa0542480:CDS
ATAATATGGTCAAACTGGCA+AGG 0.575219 4_1:+27572243 Msa0542480:CDS
TAATTTGTGGCTGACTCTTG+TGG 0.576163 4_1:+27572058 Msa0542480:CDS
ACATACCTAAAATCCAAAGA+AGG 0.577290 4_1:-27568499 None:intergenic
TGTTGATAATATTAATCTGA+AGG 0.578916 4_1:-27572555 None:intergenic
CAAGCCTTTGACCAATATGC+CGG 0.579481 4_1:-27572215 None:intergenic
AAATCCGTTGAGAATTCCTA+AGG 0.582010 4_1:+27570162 Msa0542480:CDS
CTTCTTATCATCCAACTCTA+CGG 0.583488 4_1:-27575523 None:intergenic
CAGCCACACAGAGAATGATC+AGG 0.583825 4_1:-27575103 None:intergenic
GCAACTGGAGAACATGTCCT+TGG 0.584551 4_1:-27576380 None:intergenic
TGAATCAAGAGGCTCTCACT+TGG 0.585356 4_1:-27573231 None:intergenic
TTGTAATATACACATTTCCA+AGG 0.585906 4_1:-27572740 None:intergenic
TATAAGCATGTACGATGCCA+AGG 0.585994 4_1:-27575168 None:intergenic
GTCAATTGGCTCAAGAAATG+GGG 0.587894 4_1:+27571509 Msa0542480:CDS
AATAGAGACCTCCTGCGAGA+TGG 0.591742 4_1:-27575143 None:intergenic
TTAGAATAATAATGGGAATG+GGG 0.593355 4_1:-27568333 None:intergenic
AATAGGAAACCTGTGGAAGG+AGG 0.593531 4_1:+27573285 Msa0542480:CDS
ACTAACTGTTGAATATATCA+GGG 0.596910 4_1:-27575243 None:intergenic
GGTCCAATGAAATGCTCATG+AGG 0.596995 4_1:-27574512 None:intergenic
GAGGTTTACAACCATCTCGC+AGG 0.597698 4_1:+27575132 Msa0542480:CDS
AGTGTGAGGCTCTTGTATCA+GGG 0.600633 4_1:+27576869 Msa0542480:CDS
TGACCACGAAACACGAATTG+GGG 0.603005 4_1:+27573125 Msa0542480:CDS
CAGTAGTTGATGTCAGCAGT+AGG 0.605929 4_1:+27573310 Msa0542480:CDS
GTGATATGACACGTTAGGGA+TGG 0.608957 4_1:-27572967 None:intergenic
TGTCTATAGTCATACGAACA+CGG 0.609919 4_1:-27577596 None:intergenic
CTTGGTGTCTCCATAAACAA+TGG 0.611978 4_1:-27576362 None:intergenic
GAAAACCTCACCTGATTACG+AGG 0.612901 4_1:-27569439 None:intergenic
TGACCTGATCATTCTCTGTG+TGG 0.614968 4_1:+27575100 Msa0542480:CDS
TAGGAAACCTGTGGAAGGAG+GGG 0.615399 4_1:+27573287 Msa0542480:CDS
ACCTCCTTAAGTGCTTAATG+AGG 0.616844 4_1:-27572645 None:intergenic
AACACAGCAGAGGTTGCCAC+AGG 0.618662 4_1:-27569347 None:intergenic
GTGACTTTGGAGAATTACAT+GGG 0.619470 4_1:+27571960 Msa0542480:CDS
TTATCATAGGGGCTGGCAGG+TGG 0.621286 4_1:-27577638 None:intergenic
ACTACAAGCTCTATCCTACA+TGG 0.622795 4_1:+27571567 Msa0542480:CDS
AGAACAAAGCAGTACCATGT+AGG 0.622976 4_1:-27571581 None:intergenic
TAACGTGTCATATCACAAGA+AGG 0.624982 4_1:+27572974 Msa0542480:CDS
AGGGTCTTAGTAGCAAAATG+GGG 0.624990 4_1:+27569299 Msa0542480:intron
AGATCCGGCATATTGGTCAA+AGG 0.627533 4_1:+27572211 Msa0542480:CDS
ACTGACCTTAATTGGTAGAG+GGG 0.629528 4_1:-27576983 None:intergenic
CTCGAGCTAGAACGAAGAGA+AGG 0.629802 4_1:-27569373 None:intergenic
ACAGCCATCAAATCAAGGAT+GGG 0.630952 4_1:-27572861 None:intergenic
AACTGGGGAGAAAACAGAGA+TGG 0.631697 4_1:-27573177 None:intergenic
AAGGAATTTCCCAAAGAGGA+CGG 0.633587 4_1:+27572008 Msa0542480:CDS
TGCTGGATGTTAATGGTGCT+AGG 0.637191 4_1:+27577673 Msa0542480:exon
ATCAATAGGAAACCTGTGGA+AGG 0.638646 4_1:+27573282 Msa0542480:CDS
TATATTACAACTTTCAAACA+AGG 0.638772 4_1:+27572753 Msa0542480:CDS
CATCGGAAAAGCTGTAAACA+CGG 0.640688 4_1:-27573353 None:intergenic
CTTTCAAGAATTTATCATAG+GGG 0.640709 4_1:-27577649 None:intergenic
TTTACCTTAGGAATTCTCAA+CGG 0.641215 4_1:-27570166 None:intergenic
CCCCAAGGAATTTCCCAAAG+AGG 0.642073 4_1:+27572004 Msa0542480:CDS
AAGAAAGCAAGAGACTCACT+TGG 0.642476 4_1:-27573626 None:intergenic
GTCCAATGAAATGCTCATGA+GGG 0.642966 4_1:-27574511 None:intergenic
GAGCTTGTAGTCCAGCTGAA+CGG 0.644770 4_1:-27571555 None:intergenic
ATCTAGCTCCAATCACCCCA+AGG 0.646399 4_1:+27571989 Msa0542480:CDS
ACAGATCAATAGGAAACCTG+TGG 0.646808 4_1:+27573278 Msa0542480:CDS
GTACAGGATTTGCAGGAATG+GGG 0.647087 4_1:-27576825 None:intergenic
GTCTATAGTCATACGAACAC+GGG 0.648189 4_1:-27577595 None:intergenic
ATAAAGAAACAACTTGCACA+GGG 0.651476 4_1:+27576305 Msa0542480:CDS
GAGAAGGACAAACACAGCAG+AGG 0.659420 4_1:-27569357 None:intergenic
ATTGATGAAACAGAGCATCA+GGG 0.660307 4_1:-27573080 None:intergenic
CAAATATTCAAAATTACCGG+AGG 0.662296 4_1:+27575578 Msa0542480:CDS
CAGGCAACATCTATGGACAA+TGG 0.662814 4_1:+27573660 Msa0542480:CDS
CTGATACAAGAGCCTCACAC+TGG 0.662972 4_1:-27576867 None:intergenic
CAGACACTGGAGTATTCGGA+AGG 0.663133 4_1:+27577521 Msa0542480:intron
GTTTACAACCATCTCGCAGG+AGG 0.666560 4_1:+27575135 Msa0542480:CDS
AGGTTATCGACAGAGAGCAA+TGG 0.667525 4_1:-27576587 None:intergenic
ACCTCATTAAGCACTTAAGG+AGG 0.668442 4_1:+27572644 Msa0542480:CDS
TCAATTGGCTCAAGAAATGG+GGG 0.671017 4_1:+27571510 Msa0542480:CDS
GAAACTAGCCACTTGCCGTG+CGG 0.674563 4_1:-27576803 None:intergenic
GAGACTGGGCCTGAACCAAG+TGG 0.675352 4_1:+27576545 Msa0542480:CDS
GGTGTCTCCATAAACAATGG+AGG 0.682652 4_1:-27576359 None:intergenic
GGGTCTTAGTAGCAAAATGG+GGG 0.689107 4_1:+27569300 Msa0542480:intron
TCATGAGGGAGAATGCCAGT+TGG 0.689364 4_1:-27574497 None:intergenic
CCAAATGAAGAACCAGTGTG+AGG 0.696233 4_1:+27576855 Msa0542480:CDS
CATTGTTTATGGAGACACCA+AGG 0.708806 4_1:+27576363 Msa0542480:CDS
AAAACCTCACCTGATTACGA+GGG 0.709357 4_1:-27569438 None:intergenic
CAAGGGAAGCTACAACTCTG+CGG 0.734909 4_1:+27572261 Msa0542480:CDS
TAAAGAAACAACTTGCACAG+GGG 0.750879 4_1:+27576306 Msa0542480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTAAATTTAAAAAAATT+AGG - chr4_1:27571438-27571457 None:intergenic 0.0%
!!! TTTTTTTTTTTTCATATTCT+GGG - chr4_1:27568242-27568261 None:intergenic 10.0%
!!! TTTTTTTTTTTTTCATATTC+TGG - chr4_1:27568243-27568262 None:intergenic 10.0%
!!! ATATATAATTATCAGTTTTA+TGG - chr4_1:27569639-27569658 None:intergenic 10.0%
!!! TATTTTTTTTTAAAGAAACT+CGG - chr4_1:27571168-27571187 None:intergenic 10.0%
!! TAATTAGATTTGAAAAAATA+AGG - chr4_1:27571911-27571930 None:intergenic 10.0%
!! ATTTATTTATTTACTTTGAA+TGG + chr4_1:27573878-27573897 Msa0542480:intron 10.0%
!!! TGCTTTTTAAAATTTTAATT+AGG + chr4_1:27575355-27575374 Msa0542480:intron 10.0%
!!! TTTTTTTTTTTCATATTCTG+GGG - chr4_1:27568241-27568260 None:intergenic 15.0%
!! ACATAAAATATAAACTATCA+TGG - chr4_1:27568857-27568876 None:intergenic 15.0%
!!! TTATTTGTAATGAAATTTTG+CGG + chr4_1:27569857-27569876 Msa0542480:intron 15.0%
!! AACTTATTAGAATTATTTAC+TGG + chr4_1:27570272-27570291 Msa0542480:intron 15.0%
!! TAAAAAAAAATATCACTGTT+TGG + chr4_1:27571176-27571195 Msa0542480:intron 15.0%
!! ATATATGGTATAAATATACA+TGG - chr4_1:27571383-27571402 None:intergenic 15.0%
!!! TTAAATTTAAAATAGACAGA+TGG + chr4_1:27571445-27571464 Msa0542480:intron 15.0%
!! TAGTGATACAAAAAAAAAAA+AGG + chr4_1:27571797-27571816 Msa0542480:intron 15.0%
!! AAAAAATTACACCTTAAAAT+AGG - chr4_1:27574649-27574668 None:intergenic 15.0%
!!! AATTTTGTAAATCAATAATG+TGG - chr4_1:27574956-27574975 None:intergenic 15.0%
!! ATACTTGCAAATATTATATT+AGG + chr4_1:27576170-27576189 Msa0542480:intron 15.0%
!!! TATGATTTTATTCTTACTAT+TGG + chr4_1:27576655-27576674 Msa0542480:intron 15.0%
!! TAGTTTAAATGATATAATTG+AGG + chr4_1:27577422-27577441 Msa0542480:intron 15.0%
!!! TTTTATTGTATTGTTTTGTT+TGG + chr4_1:27577763-27577782 Msa0542480:three_prime_UTR 15.0%
!!! TTTTTTTTTTCATATTCTGG+GGG - chr4_1:27568240-27568259 None:intergenic 20.0%
!!! TTTAGTTCTAAAATTATGTG+AGG + chr4_1:27568544-27568563 Msa0542480:intron 20.0%
!!! TGAATTTAAGATGTTAATGA+TGG + chr4_1:27568674-27568693 Msa0542480:intron 20.0%
!!! TTTTAATTTTTGTTCGTGTT+TGG + chr4_1:27568944-27568963 Msa0542480:intron 20.0%
!!! ATTAAGTTGTTTATCCAAAT+AGG + chr4_1:27569279-27569298 Msa0542480:intron 20.0%
!!! TTAAGTTGTTTATCCAAATA+GGG + chr4_1:27569280-27569299 Msa0542480:intron 20.0%
!!! TGATTTTCACAATAAATGTT+CGG - chr4_1:27569612-27569631 None:intergenic 20.0%
!! AATTTCATTACAAATAAGAG+TGG - chr4_1:27569854-27569873 None:intergenic 20.0%
!!! TTCAATTTTCAGAAGAAAAA+GGG + chr4_1:27569936-27569955 Msa0542480:intron 20.0%
!!! TTTCCAATTTTTCTATCATT+AGG - chr4_1:27570121-27570140 None:intergenic 20.0%
!! AAACACAAGAAATATAACTT+TGG - chr4_1:27570313-27570332 None:intergenic 20.0%
!! TTACAAGTTTCATATGATAT+TGG + chr4_1:27570820-27570839 Msa0542480:intron 20.0%
!! CATATTCAAAAGAAAAAATG+TGG - chr4_1:27570939-27570958 None:intergenic 20.0%
!! TAAGTGTATTATTCTTCAAA+CGG - chr4_1:27571221-27571240 None:intergenic 20.0%
!! CATTCACACAAAAAAATATA+TGG - chr4_1:27571398-27571417 None:intergenic 20.0%
!!! CATATATTTTTTTGTGTGAA+TGG + chr4_1:27571396-27571415 Msa0542480:intron 20.0%
!! GTATCAAAATAATGAAAAAG+AGG - chr4_1:27572299-27572318 None:intergenic 20.0%
!!! ATTTTGATACTCAAAATCAA+TGG + chr4_1:27572309-27572328 Msa0542480:CDS 20.0%
!!! GTAACACAATTTTCTAAAAT+AGG + chr4_1:27572413-27572432 Msa0542480:intron 20.0%
!! ATAATATTAATCTGAAGGAT+AGG - chr4_1:27572553-27572572 None:intergenic 20.0%
!!! TGTTGATAATATTAATCTGA+AGG - chr4_1:27572558-27572577 None:intergenic 20.0%
!! TATATTACAACTTTCAAACA+AGG + chr4_1:27572753-27572772 Msa0542480:CDS 20.0%
!! GCATTACTAATATTATTAAG+TGG + chr4_1:27573480-27573499 Msa0542480:intron 20.0%
!!! ATAATGTTTTTCATTTTCAG+TGG + chr4_1:27573806-27573825 Msa0542480:intron 20.0%
!!! AGTGCAATTTTGAAATTTTA+TGG + chr4_1:27574078-27574097 Msa0542480:intron 20.0%
!!! TTTTTAACAAAACTTTGTCA+AGG - chr4_1:27574367-27574386 None:intergenic 20.0%
!!! TATTGATTTACAAAATTTCG+TGG + chr4_1:27574959-27574978 Msa0542480:intron 20.0%
!! TTATTATGTTGTAAACTTGT+TGG + chr4_1:27575048-27575067 Msa0542480:intron 20.0%
!!! TATTATGTTGTAAACTTGTT+GGG + chr4_1:27575049-27575068 Msa0542480:intron 20.0%
!! ATCTTGAATATAAGCAAAAA+GGG - chr4_1:27575620-27575639 None:intergenic 20.0%
!! AATCTTGAATATAAGCAAAA+AGG - chr4_1:27575621-27575640 None:intergenic 20.0%
!!! TTTTGCTTATATTCAAGATT+AGG + chr4_1:27575621-27575640 Msa0542480:intron 20.0%
!! AGTAAAAATCACATTAAAGT+TGG + chr4_1:27575730-27575749 Msa0542480:intron 20.0%
!! ATAAAAATACTGACCTTAAT+TGG - chr4_1:27576994-27577013 None:intergenic 20.0%
!!! CACAATATATTATTCTTTTG+CGG - chr4_1:27577037-27577056 None:intergenic 20.0%
!!! AATTTTTTCTTCAAGAACTT+CGG + chr4_1:27577064-27577083 Msa0542480:intron 20.0%
!!! TTTATTTTTAATGCCAAAAC+AGG - chr4_1:27577394-27577413 None:intergenic 20.0%
!! TAAAAAGACGAAAAAATAGA+GGG - chr4_1:27577748-27577767 None:intergenic 20.0%
!! ATAAAAAGACGAAAAAATAG+AGG - chr4_1:27577749-27577768 None:intergenic 20.0%
!!! AAAGTTTCAACTCATTTTTA+GGG - chr4_1:27577877-27577896 None:intergenic 20.0%
!!! AAAAGTTTCAACTCATTTTT+AGG - chr4_1:27577878-27577897 None:intergenic 20.0%
!! TTAGAATAATAATGGGAATG+GGG - chr4_1:27568336-27568355 None:intergenic 25.0%
!! CTTAGAATAATAATGGGAAT+GGG - chr4_1:27568337-27568356 None:intergenic 25.0%
!! TCTTAGAATAATAATGGGAA+TGG - chr4_1:27568338-27568357 None:intergenic 25.0%
! ATTCCCATTATTATTCTAAG+AGG + chr4_1:27568337-27568356 Msa0542480:five_prime_UTR 25.0%
! ACACCTCTTAGAATAATAAT+GGG - chr4_1:27568343-27568362 None:intergenic 25.0%
! AACACCTCTTAGAATAATAA+TGG - chr4_1:27568344-27568363 None:intergenic 25.0%
!! AATTTCCTTCTTTGGATTTT+AGG + chr4_1:27568494-27568513 Msa0542480:five_prime_UTR 25.0%
! AATAAGCTTAAAACAGCTTA+TGG - chr4_1:27568822-27568841 None:intergenic 25.0%
! TAGTAATTATTTGTGAGTAC+TGG + chr4_1:27569713-27569732 Msa0542480:intron 25.0%
!!! ATGGTTTTTAAGTTTAGTGA+AGG + chr4_1:27569740-27569759 Msa0542480:intron 25.0%
!! CTTCAATTTTCAGAAGAAAA+AGG + chr4_1:27569935-27569954 Msa0542480:intron 25.0%
! GAACCTAATGATAGAAAAAT+TGG + chr4_1:27570115-27570134 Msa0542480:CDS 25.0%
!! GAACATAACTATTTTACCTT+AGG - chr4_1:27570181-27570200 None:intergenic 25.0%
!!! AAGAAGTCTTTAGTTTTCTT+TGG + chr4_1:27570202-27570221 Msa0542480:intron 25.0%
! AAGAAATATAACTTTGGACT+TGG - chr4_1:27570307-27570326 None:intergenic 25.0%
! ATAAAACACAAGAAATCCTT+AGG - chr4_1:27570369-27570388 None:intergenic 25.0%
! AAAATTCTTATCGTCATGTA+AGG + chr4_1:27570483-27570502 Msa0542480:CDS 25.0%
! CTACTTGATAGAAATGATTA+TGG - chr4_1:27570556-27570575 None:intergenic 25.0%
!!! TAAAGTGTTCAATTTTCTTG+TGG - chr4_1:27570589-27570608 None:intergenic 25.0%
! TATGGTATAAGAAAAAATCC+TGG - chr4_1:27570878-27570897 None:intergenic 25.0%
! TTTCTTATACCATAAAGTTG+CGG + chr4_1:27570884-27570903 Msa0542480:intron 25.0%
! GTAGTTTATTAGAGATTGTT+CGG + chr4_1:27571007-27571026 Msa0542480:CDS 25.0%
!!! TTTTGATTTTATAGATTGCC+AGG + chr4_1:27571086-27571105 Msa0542480:CDS 25.0%
! TTAACTTCAACAATTCAGAA+AGG - chr4_1:27571127-27571146 None:intergenic 25.0%
! TTGAAGTTAATATCACTGTT+TGG + chr4_1:27571137-27571156 Msa0542480:intron 25.0%
! AAGTGTATTATTCTTCAAAC+GGG - chr4_1:27571220-27571239 None:intergenic 25.0%
!!! ACACTTAAGTTTTAACTTTC+CGG + chr4_1:27571234-27571253 Msa0542480:intron 25.0%
! TACATACATGTTCAATTTAG+AGG + chr4_1:27571468-27571487 Msa0542480:CDS 25.0%
! ACATACATGTTCAATTTAGA+GGG + chr4_1:27571469-27571488 Msa0542480:CDS 25.0%
!! TTCTATAATTTGATAGCACA+TGG + chr4_1:27571644-27571663 Msa0542480:intron 25.0%
! AGAGTATATAAGTATGGAAA+CGG - chr4_1:27571765-27571784 None:intergenic 25.0%
!! TCCATACTTATATACTCTTT+TGG + chr4_1:27571767-27571786 Msa0542480:intron 25.0%
! CAAACTTTGAATCAAAACTT+GGG + chr4_1:27571843-27571862 Msa0542480:intron 25.0%
! AATAATGAAAAAGAGGTTCA+AGG - chr4_1:27572292-27572311 None:intergenic 25.0%
! AACAATCAGTATACTGAAAT+TGG - chr4_1:27572447-27572466 None:intergenic 25.0%
! TTGTAATATACACATTTCCA+AGG - chr4_1:27572743-27572762 None:intergenic 25.0%
! TTGTTCTCAAAATGTTACAA+TGG - chr4_1:27572823-27572842 None:intergenic 25.0%
!!! TTTCTTACTTTGACTTGAAA+TGG + chr4_1:27573002-27573021 Msa0542480:intron 25.0%
! TAAATTGACATTGAGTGATA+AGG - chr4_1:27573977-27573996 None:intergenic 25.0%
! TATAAATGAGTATTTCAGTC+TGG + chr4_1:27574184-27574203 Msa0542480:intron 25.0%
! TAACATCATTCATTCTTGAA+AGG - chr4_1:27574268-27574287 None:intergenic 25.0%
!! TTTTCAACATCAACTTGAAT+TGG + chr4_1:27574608-27574627 Msa0542480:intron 25.0%
!! GTTATCAATCACCTATTTTA+AGG + chr4_1:27574635-27574654 Msa0542480:intron 25.0%
! AGTATTGCTTGTAAACTATT+AGG - chr4_1:27574798-27574817 None:intergenic 25.0%
!!! AATCCACATTATTGATTTAC+AGG + chr4_1:27574836-27574855 Msa0542480:intron 25.0%
! TTAATTATTGGAATTAGCTC+AGG - chr4_1:27575218-27575237 None:intergenic 25.0%
! ACTAACTGTTGAATATATCA+GGG - chr4_1:27575246-27575265 None:intergenic 25.0%
! AACTAACTGTTGAATATATC+AGG - chr4_1:27575247-27575266 None:intergenic 25.0%
! AATGCAAATCAATCTTGAAA+AGG - chr4_1:27575321-27575340 None:intergenic 25.0%
!! GTAATTTTGAATATTTGGTC+AGG - chr4_1:27575575-27575594 None:intergenic 25.0%
! GACCAAATATTCAAAATTAC+CGG + chr4_1:27575575-27575594 Msa0542480:CDS 25.0%
! CATCTTACCATAAATTATGA+GGG + chr4_1:27575873-27575892 Msa0542480:intron 25.0%
! ACTAAAAGCAATGAATTATC+TGG - chr4_1:27576048-27576067 None:intergenic 25.0%
! AGATATACAGAGTACAAATT+CGG - chr4_1:27576085-27576104 None:intergenic 25.0%
! AATTTACCTCATCAAAATCT+GGG - chr4_1:27576418-27576437 None:intergenic 25.0%
! AAATTTACCTCATCAAAATC+TGG - chr4_1:27576419-27576438 None:intergenic 25.0%
!!! TCAAACTTTTATATTTCTGC+TGG + chr4_1:27576711-27576730 Msa0542480:intron 25.0%
!! TTATTGATTATTGAATGTCC+TGG + chr4_1:27577120-27577139 Msa0542480:intron 25.0%
!!! TGAATTTTAGTAACCTGTTT+TGG + chr4_1:27577378-27577397 Msa0542480:intron 25.0%
! CTTTCAAGAATTTATCATAG+GGG - chr4_1:27577652-27577671 None:intergenic 25.0%
! GCTTTCAAGAATTTATCATA+GGG - chr4_1:27577653-27577672 None:intergenic 25.0%
! AGCTTTCAAGAATTTATCAT+AGG - chr4_1:27577654-27577673 None:intergenic 25.0%
! AAAAAGACGAAAAAATAGAG+GGG - chr4_1:27577747-27577766 None:intergenic 25.0%
ACATACCTAAAATCCAAAGA+AGG - chr4_1:27568502-27568521 None:intergenic 30.0%
!! ATGATGGAATGTGTGAATTT+TGG + chr4_1:27568690-27568709 Msa0542480:intron 30.0%
! TTGATCGAATGCGTTAATTT+TGG + chr4_1:27569037-27569056 Msa0542480:intron 30.0%
TTTGTGAGGAAATTCTTGAT+GGG + chr4_1:27569075-27569094 Msa0542480:intron 30.0%
AGCTGATATGTCAAACAAAA+TGG - chr4_1:27569477-27569496 None:intergenic 30.0%
AACTATAGTGCTAAGTAAGT+TGG - chr4_1:27569537-27569556 None:intergenic 30.0%
ATGTTTGACTCTAATGATCA+AGG + chr4_1:27569657-27569676 Msa0542480:intron 30.0%
TTTACCTTAGGAATTCTCAA+CGG - chr4_1:27570169-27570188 None:intergenic 30.0%
TATGCAGATTACTGATAACT+TGG + chr4_1:27570390-27570409 Msa0542480:intron 30.0%
AGAAATGATTATGGCAGAAT+TGG - chr4_1:27570547-27570566 None:intergenic 30.0%
ATGTATTCAGTAACTTGAGA+TGG - chr4_1:27570731-27570750 None:intergenic 30.0%
!!! CTTCTGTTCTCTATTTTTGT+TGG + chr4_1:27570909-27570928 Msa0542480:intron 30.0%
TTTATAGATTGCCAGGTATT+TGG + chr4_1:27571093-27571112 Msa0542480:intron 30.0%
TATTCCTAAACTGTGTCAAT+TGG + chr4_1:27571495-27571514 Msa0542480:CDS 30.0%
! ATTTGATAGCACATGGATTA+AGG + chr4_1:27571651-27571670 Msa0542480:intron 30.0%
! GCCAAAAGAGTATATAAGTA+TGG - chr4_1:27571771-27571790 None:intergenic 30.0%
!!! CCAAGTTTTGATTCAAAGTT+TGG - chr4_1:27571845-27571864 None:intergenic 30.0%
CCAAACTTTGAATCAAAACT+TGG + chr4_1:27571842-27571861 Msa0542480:intron 30.0%
ATAGATCATGTTAGTGACTT+TGG + chr4_1:27571947-27571966 Msa0542480:intron 30.0%
TTTAACAGATATCTCCAAGA+AGG + chr4_1:27572034-27572053 Msa0542480:CDS 30.0%
! AAAGGCTTGCTTGTATAATA+TGG + chr4_1:27572229-27572248 Msa0542480:CDS 30.0%
CTTGTATAATATGGTCAAAC+TGG + chr4_1:27572238-27572257 Msa0542480:CDS 30.0%
AATCAATGGTCATCTGAAAA+AGG + chr4_1:27572323-27572342 Msa0542480:CDS 30.0%
!! CAATCTCTTTTAGAAGATTC+AGG + chr4_1:27572374-27572393 Msa0542480:CDS 30.0%
! TTATCTTCTGTTGTCCATTT+TGG + chr4_1:27572492-27572511 Msa0542480:CDS 30.0%
AAAGCTTCAGTTGCAATAAT+TGG + chr4_1:27572610-27572629 Msa0542480:CDS 30.0%
! AAACTGCAGCTAAATTTTGT+AGG - chr4_1:27572672-27572691 None:intergenic 30.0%
!! TGTAACATTTTGAGAACAAC+AGG + chr4_1:27572824-27572843 Msa0542480:intron 30.0%
!! ATTGTTTTATGGTCTAACTG+GGG - chr4_1:27573195-27573214 None:intergenic 30.0%
!! CATTGTTTTATGGTCTAACT+GGG - chr4_1:27573196-27573215 None:intergenic 30.0%
!! TCATTGTTTTATGGTCTAAC+TGG - chr4_1:27573197-27573216 None:intergenic 30.0%
GTTAGACCATAAAACAATGA+TGG + chr4_1:27573197-27573216 Msa0542480:CDS 30.0%
! ATTAAGTGGTTCAGTTTGTT+TGG + chr4_1:27573494-27573513 Msa0542480:intron 30.0%
TATTGAATGACTACTCTTTC+AGG + chr4_1:27573575-27573594 Msa0542480:intron 30.0%
TTTATTGTTCACTCGTTCAA+AGG + chr4_1:27573725-27573744 Msa0542480:CDS 30.0%
AGATTGGTATAACAAATGCA+TGG + chr4_1:27573750-27573769 Msa0542480:intron 30.0%
GATTGGTATAACAAATGCAT+GGG + chr4_1:27573751-27573770 Msa0542480:intron 30.0%
TTTGAATGGCAAATGTTAGT+GGG + chr4_1:27573892-27573911 Msa0542480:intron 30.0%
!! ATAAGTGTTGGAGAGATAAT+GGG - chr4_1:27573935-27573954 None:intergenic 30.0%
AAAATTGCACTCATAAGTAC+AGG - chr4_1:27574069-27574088 None:intergenic 30.0%
! ACATTTTATGTCTGCTTTGT+TGG + chr4_1:27574112-27574131 Msa0542480:intron 30.0%
TTATTCCTGTATCAGAACAA+CGG + chr4_1:27574160-27574179 Msa0542480:intron 30.0%
AATTTAAACCATCATGGACT+TGG - chr4_1:27574434-27574453 None:intergenic 30.0%
GAAAGCAATTTAAACCATCA+TGG - chr4_1:27574440-27574459 None:intergenic 30.0%
ATATGTTCAACTTACCTTCT+TGG - chr4_1:27574536-27574555 None:intergenic 30.0%
GAAAACAAGTTCACAAAGAA+AGG - chr4_1:27574593-27574612 None:intergenic 30.0%
CACTTGAAAATACTTACACA+TGG + chr4_1:27574744-27574763 Msa0542480:intron 30.0%
GTTTACAAGCAATACTGTAA+AGG + chr4_1:27574802-27574821 Msa0542480:intron 30.0%
CATCCTGTAAATCAATAATG+TGG - chr4_1:27574842-27574861 None:intergenic 30.0%
!! TATTGATTTACAGGATGTCA+TGG + chr4_1:27574845-27574864 Msa0542480:intron 30.0%
!! CATGGCTTGTTATACTAAAT+TGG + chr4_1:27574863-27574882 Msa0542480:intron 30.0%
ATCAGGGATGCTTTAATTAT+TGG - chr4_1:27575230-27575249 None:intergenic 30.0%
AAAAGGAAGCTGAATAACAA+GGG - chr4_1:27575304-27575323 None:intergenic 30.0%
GAATCAGAGAAGATAATCTA+TGG + chr4_1:27575459-27575478 Msa0542480:CDS 30.0%
! CTCCGGTAATTTTGAATATT+TGG - chr4_1:27575580-27575599 None:intergenic 30.0%
CAAATATTCAAAATTACCGG+AGG + chr4_1:27575578-27575597 Msa0542480:CDS 30.0%
ATACAGTAGTCTCTACTTTA+AGG - chr4_1:27575672-27575691 None:intergenic 30.0%
GCATCTTACCATAAATTATG+AGG + chr4_1:27575872-27575891 Msa0542480:intron 30.0%
TTCCACTGTTAAATTACAGA+TGG - chr4_1:27575932-27575951 None:intergenic 30.0%
TGATTTAATCCATAGTTTCC+AGG - chr4_1:27576129-27576148 None:intergenic 30.0%
!! GCATGGAATGTTCTAAAAAA+TGG + chr4_1:27576203-27576222 Msa0542480:intron 30.0%
!! TGGAATGTTCTAAAAAATGG+CGG + chr4_1:27576206-27576225 Msa0542480:intron 30.0%
!! AAGCTTTTTCCATATTATCC+AGG + chr4_1:27576268-27576287 Msa0542480:intron 30.0%
ATAAAGAAACAACTTGCACA+GGG + chr4_1:27576305-27576324 Msa0542480:CDS 30.0%
! TTTTCAAAGCCACTTAAATG+CGG - chr4_1:27576459-27576478 None:intergenic 30.0%
!! ATGTTTCACTATTTCTGTGA+TGG + chr4_1:27576481-27576500 Msa0542480:intron 30.0%
CGTTAATCAACTCTTAGAAT+CGG + chr4_1:27576622-27576641 Msa0542480:CDS 30.0%
TTTCAGTTAAAGATTCCATG+AGG + chr4_1:27576754-27576773 Msa0542480:intron 30.0%
TTCAGTTAAAGATTCCATGA+GGG + chr4_1:27576755-27576774 Msa0542480:intron 30.0%
!! GTTATTGTATTGACAGGTTT+TGG + chr4_1:27576777-27576796 Msa0542480:intron 30.0%
!! AGGTCAGTATTTTTATACCA+TGG + chr4_1:27576998-27577017 Msa0542480:intron 30.0%
TTGAGATTTGAATGTTGATC+AGG + chr4_1:27577160-27577179 Msa0542480:intron 30.0%
ATATGAATAACTCAGCAGAT+AGG - chr4_1:27577294-27577313 None:intergenic 30.0%
TGCTGAGTTATTCATATTCA+CGG + chr4_1:27577297-27577316 Msa0542480:intron 30.0%
! TATAATTGAGGAGCTTTTGA+AGG + chr4_1:27577434-27577453 Msa0542480:intron 30.0%
! TTATTGATTGCTACGTCTTA+TGG + chr4_1:27577484-27577503 Msa0542480:intron 30.0%
GAGATTCATGTCTACATAAA+TGG - chr4_1:27577723-27577742 None:intergenic 30.0%
GAGATGAATGAGAGAAAAAA+TGG - chr4_1:27577812-27577831 None:intergenic 30.0%
CTGTTAACAGCACAATTTGT+CGG + chr4_1:27568305-27568324 Msa0542480:five_prime_UTR 35.0%
TGTTAACAGCACAATTTGTC+GGG + chr4_1:27568306-27568325 Msa0542480:five_prime_UTR 35.0%
CCAAAGAAGGAAATTGTAGT+TGG - chr4_1:27568489-27568508 None:intergenic 35.0%
CCAACTACAATTTCCTTCTT+TGG + chr4_1:27568486-27568505 Msa0542480:five_prime_UTR 35.0%
CAATTGCTAGAATGATGAAC+TGG + chr4_1:27568649-27568668 Msa0542480:intron 35.0%
!! TGGAATGTGTGAATTTTGGT+TGG + chr4_1:27568694-27568713 Msa0542480:intron 35.0%
!!! AATGTGTGAATTTTGGTTGG+AGG + chr4_1:27568697-27568716 Msa0542480:intron 35.0%
TAATCACTTGTCAGACCTTA+TGG + chr4_1:27568778-27568797 Msa0542480:intron 35.0%
! GGTCTTAAGTTGTTTCCATA+AGG - chr4_1:27568796-27568815 None:intergenic 35.0%
!! TTTAGTTCTAAGATCCTGTG+AGG + chr4_1:27568876-27568895 Msa0542480:intron 35.0%
AAAGAGAATTATGACCTCAC+AGG - chr4_1:27568893-27568912 None:intergenic 35.0%
TTGTATACACACGATGAACA+AGG + chr4_1:27568978-27568997 Msa0542480:intron 35.0%
!!! CACGATGAACAAGGTTTTTT+TGG + chr4_1:27568987-27569006 Msa0542480:intron 35.0%
!! AATGCGTTAATTTTGGTCAG+AGG + chr4_1:27569044-27569063 Msa0542480:intron 35.0%
GTTTGTGAGGAAATTCTTGA+TGG + chr4_1:27569074-27569093 Msa0542480:intron 35.0%
AGACTGTTTAAGAGAGTTTG+TGG + chr4_1:27569139-27569158 Msa0542480:intron 35.0%
TTTGCTACTAAGACCCTATT+TGG - chr4_1:27569296-27569315 None:intergenic 35.0%
ATAGGGTCTTAGTAGCAAAA+TGG + chr4_1:27569297-27569316 Msa0542480:intron 35.0%
TAGGGTCTTAGTAGCAAAAT+GGG + chr4_1:27569298-27569317 Msa0542480:intron 35.0%
! TGAAATTTTCCCTCGTAATC+AGG + chr4_1:27569429-27569448 Msa0542480:CDS 35.0%
! GTGAGGTTTTCAGCTTATTT+AGG + chr4_1:27569451-27569470 Msa0542480:intron 35.0%
TTTGACATATCAGCTACGTT+TGG + chr4_1:27569482-27569501 Msa0542480:intron 35.0%
TACGTTTGGAAGGTTTATGT+TGG + chr4_1:27569496-27569515 Msa0542480:intron 35.0%
TTGCATAGCTTTCTGTACTT+TGG + chr4_1:27569556-27569575 Msa0542480:intron 35.0%
TGCATAGCTTTCTGTACTTT+GGG + chr4_1:27569557-27569576 Msa0542480:intron 35.0%
!! GTTGTTGGTTTGGTAATACT+TGG + chr4_1:27569580-27569599 Msa0542480:intron 35.0%
! ATAAGCATTTTCCCAGATAC+CGG - chr4_1:27569685-27569704 None:intergenic 35.0%
! TTTCAGAAGAAAAAGGGTAC+TGG + chr4_1:27569942-27569961 Msa0542480:intron 35.0%
AAATCCGTTGAGAATTCCTA+AGG + chr4_1:27570162-27570181 Msa0542480:CDS 35.0%
AAACACAAGAAATCCTTAGG+TGG - chr4_1:27570366-27570385 None:intergenic 35.0%
CTTGGAGCAAATATGTTACA+AGG + chr4_1:27570408-27570427 Msa0542480:CDS 35.0%
GATTTGCGTAATGAAGTCTT+TGG + chr4_1:27570430-27570449 Msa0542480:CDS 35.0%
! TCGTTGGATTAGAATCAAGA+GGG - chr4_1:27570681-27570700 None:intergenic 35.0%
ATAATGCTTCTGAATCTTGC+AGG + chr4_1:27570971-27570990 Msa0542480:intron 35.0%
AATAAACTACCCGCAAAAAG+TGG - chr4_1:27570997-27571016 None:intergenic 35.0%
AAACTCGAACAGATGAAATC+AGG + chr4_1:27571043-27571062 Msa0542480:CDS 35.0%
ACAGATGAAATCAGGATCAT+AGG + chr4_1:27571051-27571070 Msa0542480:CDS 35.0%
AGGTTTATTAGCCAAATACC+TGG - chr4_1:27571107-27571126 None:intergenic 35.0%
!!! CCAGCATGGTTTTTTATCTA+GGG - chr4_1:27571301-27571320 None:intergenic 35.0%
!!! TAAAAAACCATGCTGGCTTT+TGG + chr4_1:27571305-27571324 Msa0542480:intron 35.0%
! TGTCAATTGGCTCAAGAAAT+GGG + chr4_1:27571508-27571527 Msa0542480:CDS 35.0%
! CTTTTCTCCTATGTTTTCTG+TGG + chr4_1:27571680-27571699 Msa0542480:intron 35.0%
TGAGCAATCACATCTTTCAA+TGG + chr4_1:27571721-27571740 Msa0542480:CDS 35.0%
! ATCACATCTTTCAATGGACT+TGG + chr4_1:27571727-27571746 Msa0542480:CDS 35.0%
! AGTGACTTTGGAGAATTACA+TGG + chr4_1:27571959-27571978 Msa0542480:CDS 35.0%
! GTGACTTTGGAGAATTACAT+GGG + chr4_1:27571960-27571979 Msa0542480:CDS 35.0%
TCTCCAAGAAGGATAATTTG+TGG + chr4_1:27572045-27572064 Msa0542480:CDS 35.0%
! TTACAAATGATGATGACCTC+TGG - chr4_1:27572151-27572170 None:intergenic 35.0%
AGGTCATCATCATTTGTAAC+AGG + chr4_1:27572152-27572171 Msa0542480:intron 35.0%
ATAATATGGTCAAACTGGCA+AGG + chr4_1:27572243-27572262 Msa0542480:CDS 35.0%
TAATATGGTCAAACTGGCAA+GGG + chr4_1:27572244-27572263 Msa0542480:CDS 35.0%
! TTGTGTTACTAAATGTCGCA+GGG - chr4_1:27572402-27572421 None:intergenic 35.0%
! ATTGTGTTACTAAATGTCGC+AGG - chr4_1:27572403-27572422 None:intergenic 35.0%
AGAAGATAAGAGTTATCTCC+TGG - chr4_1:27572481-27572500 None:intergenic 35.0%
! ATCAAAGTGCTTGACCAAAA+TGG - chr4_1:27572509-27572528 None:intergenic 35.0%
ATACTCATCATTCCCAATAC+TGG - chr4_1:27572695-27572714 None:intergenic 35.0%
!! ACATTTTGAGAACAACAGGT+TGG + chr4_1:27572828-27572847 Msa0542480:intron 35.0%
!! CATTTTGAGAACAACAGGTT+GGG + chr4_1:27572829-27572848 Msa0542480:intron 35.0%
!! ATTTTGAGAACAACAGGTTG+GGG + chr4_1:27572830-27572849 Msa0542480:intron 35.0%
! GATTGTTGTTCTTGCTACAA+TGG - chr4_1:27572913-27572932 None:intergenic 35.0%
TCTTGTGATATGACACGTTA+GGG - chr4_1:27572974-27572993 None:intergenic 35.0%
TTCTTGTGATATGACACGTT+AGG - chr4_1:27572975-27572994 None:intergenic 35.0%
TAACGTGTCATATCACAAGA+AGG + chr4_1:27572974-27572993 Msa0542480:CDS 35.0%
AATGGTCCTTTCTATATGCT+CGG + chr4_1:27573020-27573039 Msa0542480:intron 35.0%
! ATTGATGAAACAGAGCATCA+GGG - chr4_1:27573083-27573102 None:intergenic 35.0%
! AATTGATGAAACAGAGCATC+AGG - chr4_1:27573084-27573103 None:intergenic 35.0%
!! TCTCAGCCATCATTGTTTTA+TGG - chr4_1:27573206-27573225 None:intergenic 35.0%
TAAAACAATGATGGCTGAGA+AGG + chr4_1:27573206-27573225 Msa0542480:CDS 35.0%
! ATTCAGCAGGAAAGCTTTTT+AGG + chr4_1:27573249-27573268 Msa0542480:CDS 35.0%
! TTCAGCAGGAAAGCTTTTTA+GGG + chr4_1:27573250-27573269 Msa0542480:CDS 35.0%
!! TTTTCCGATGCTCTAAATCT+TGG + chr4_1:27573366-27573385 Msa0542480:CDS 35.0%
! TTTCCGATGCTCTAAATCTT+GGG + chr4_1:27573367-27573386 Msa0542480:CDS 35.0%
! TTTCCCAAGATTTAGAGCAT+CGG - chr4_1:27573373-27573392 None:intergenic 35.0%
!!! TTTGGTTTTTTCCCCAACAA+CGG + chr4_1:27573512-27573531 Msa0542480:intron 35.0%
! TTCAGGAGCTAAGTTCTTTT+CGG + chr4_1:27573592-27573611 Msa0542480:intron 35.0%
TCTCTTGCTTTCTTCAATCT+GGG + chr4_1:27573635-27573654 Msa0542480:CDS 35.0%
CTTTGAATGGCAAATGTTAG+TGG + chr4_1:27573891-27573910 Msa0542480:intron 35.0%
!! CATAAGTGTTGGAGAGATAA+TGG - chr4_1:27573936-27573955 None:intergenic 35.0%
ATTGAGTGATAAGGTGGTTT+GGG - chr4_1:27573968-27573987 None:intergenic 35.0%
ATTGACATTGAGTGATAAGG+TGG - chr4_1:27573974-27573993 None:intergenic 35.0%
TCATAAGTACAGGAACTATG+CGG - chr4_1:27574059-27574078 None:intergenic 35.0%
! TGTTGGACTTAAGTTTTACC+AGG + chr4_1:27574129-27574148 Msa0542480:intron 35.0%
! TTAAGTTTTACCAGGCAACT+AGG + chr4_1:27574137-27574156 Msa0542480:intron 35.0%
TTGCCACTAGTATTTAGTGA+TGG + chr4_1:27574214-27574233 Msa0542480:intron 35.0%
CAACCATCACTAAATACTAG+TGG - chr4_1:27574220-27574239 None:intergenic 35.0%
CACTAGTATTTAGTGATGGT+TGG + chr4_1:27574218-27574237 Msa0542480:intron 35.0%
CTAAGTAACAGAATTGCAAG+TGG - chr4_1:27574307-27574326 None:intergenic 35.0%
TTTCGTAAGATGTTTCCAAC+TGG + chr4_1:27574482-27574501 Msa0542480:CDS 35.0%
!! CGTGGCTTGTTATTCTAAAA+TGG + chr4_1:27574977-27574996 Msa0542480:intron 35.0%
! AATAACAAGGGCATGAAATG+GGG - chr4_1:27575292-27575311 None:intergenic 35.0%
! GAATAACAAGGGCATGAAAT+GGG - chr4_1:27575293-27575312 None:intergenic 35.0%
! TGAATAACAAGGGCATGAAA+TGG - chr4_1:27575294-27575313 None:intergenic 35.0%
GAAAAGGAAGCTGAATAACA+AGG - chr4_1:27575305-27575324 None:intergenic 35.0%
AATCACTGTTAGAAATCCAC+AGG + chr4_1:27575383-27575402 Msa0542480:intron 35.0%
! TGCAGCTATTAAGTCACTTT+CGG + chr4_1:27575500-27575519 Msa0542480:CDS 35.0%
CTTCTTATCATCCAACTCTA+CGG - chr4_1:27575526-27575545 None:intergenic 35.0%
AAATGAATCCATATCACCTC+CGG - chr4_1:27575597-27575616 None:intergenic 35.0%
TTCAAGATTAGGATATAGCC+AGG + chr4_1:27575632-27575651 Msa0542480:intron 35.0%
CTATACTTGAACCAAGAGTA+GGG - chr4_1:27575834-27575853 None:intergenic 35.0%
TCTATACTTGAACCAAGAGT+AGG - chr4_1:27575835-27575854 None:intergenic 35.0%
AGCCATCTGTAATTTAACAG+TGG + chr4_1:27575927-27575946 Msa0542480:intron 35.0%
TCAAATTGAAAAGCTTCGTC+AGG + chr4_1:27575966-27575985 Msa0542480:intron 35.0%
CACATTTATCCTGGAAACTA+TGG + chr4_1:27576117-27576136 Msa0542480:intron 35.0%
ACAACTCATCCTGGATAATA+TGG - chr4_1:27576280-27576299 None:intergenic 35.0%
CATAAAGAAACAACTTGCAC+AGG + chr4_1:27576304-27576323 Msa0542480:CDS 35.0%
TAAAGAAACAACTTGCACAG+GGG + chr4_1:27576306-27576325 Msa0542480:CDS 35.0%
!! GATGGATTGTTTCTAGATTG+TGG + chr4_1:27576499-27576518 Msa0542480:intron 35.0%
!! TTGTTTCTAGATTGTGGCTT+CGG + chr4_1:27576505-27576524 Msa0542480:intron 35.0%
GATTAACGCTTAAAATCGTC+AGG - chr4_1:27576610-27576629 None:intergenic 35.0%
! TTTATATTTCTGCTGGAGAG+TGG + chr4_1:27576718-27576737 Msa0542480:intron 35.0%
TGTCAATACAATAACCCTCA+TGG - chr4_1:27576772-27576791 None:intergenic 35.0%
! ATGAGGGTTATTGTATTGAC+AGG + chr4_1:27576771-27576790 Msa0542480:intron 35.0%
TTCATTTGGTCATAAGGTAC+AGG - chr4_1:27576844-27576863 None:intergenic 35.0%
TGGTTCTTCATTTGGTCATA+AGG - chr4_1:27576850-27576869 None:intergenic 35.0%
TACTGACCTTAATTGGTAGA+GGG - chr4_1:27576987-27577006 None:intergenic 35.0%
ATACTGACCTTAATTGGTAG+AGG - chr4_1:27576988-27577007 None:intergenic 35.0%
TGTCTATAGTCATACGAACA+CGG - chr4_1:27577599-27577618 None:intergenic 35.0%
GATAAATTCTTGAAAGCTGC+TGG + chr4_1:27577656-27577675 Msa0542480:CDS 35.0%
GGTTACATACACTTCAATCA+TGG - chr4_1:27577702-27577721 None:intergenic 35.0%
AGAAAAAATGGCCTACTATG+TGG - chr4_1:27577800-27577819 None:intergenic 35.0%
!!! TGTGAATTTTGGTTGGAGGT+AGG + chr4_1:27568701-27568720 Msa0542480:intron 40.0%
GCTTAAAACAGCTTATGGAG+AGG - chr4_1:27568817-27568836 None:intergenic 40.0%
!! CGTTAATTTTGGTCAGAGGT+AGG + chr4_1:27569048-27569067 Msa0542480:intron 40.0%
AGGGTCTTAGTAGCAAAATG+GGG + chr4_1:27569299-27569318 Msa0542480:intron 40.0%
AACTTCTTGTAACGCTTCAC+CGG - chr4_1:27569403-27569422 None:intergenic 40.0%
! GAAGCGTTACAAGAAGTTGT+TGG + chr4_1:27569405-27569424 Msa0542480:CDS 40.0%
AAAACCTCACCTGATTACGA+GGG - chr4_1:27569441-27569460 None:intergenic 40.0%
ACATATCAGCTACGTTTGGA+AGG + chr4_1:27569486-27569505 Msa0542480:intron 40.0%
GCATAGCTTTCTGTACTTTG+GGG + chr4_1:27569558-27569577 Msa0542480:intron 40.0%
!! TTTCTGTACTTTGGGGTTGT+TGG + chr4_1:27569565-27569584 Msa0542480:intron 40.0%
!! GTTGGTTTGGTAATACTTGG+TGG + chr4_1:27569583-27569602 Msa0542480:intron 40.0%
GACTCTAATGATCAAGGTAC+CGG + chr4_1:27569663-27569682 Msa0542480:intron 40.0%
!! ATTTGTGAGTACTGGTGAGA+TGG + chr4_1:27569721-27569740 Msa0542480:intron 40.0%
AATGCAATAGCTACTACGAG+TGG - chr4_1:27569893-27569912 None:intergenic 40.0%
!! AGAAGAAAAAGGGTACTGGA+GGG + chr4_1:27569946-27569965 Msa0542480:intron 40.0%
ATAGAAAGAGAGAGGGTTCA+AGG - chr4_1:27570039-27570058 None:intergenic 40.0%
AGGAGAGATAGAAAGAGAGA+GGG - chr4_1:27570046-27570065 None:intergenic 40.0%
!!! TGCATGATGGTTGCTGTTTT+TGG + chr4_1:27570083-27570102 Msa0542480:intron 40.0%
AGGTGGAACACAATATGAGA+CGG - chr4_1:27570349-27570368 None:intergenic 40.0%
CTCATATTGTGTTCCACCTA+AGG + chr4_1:27570350-27570369 Msa0542480:intron 40.0%
! CTCGTTGGATTAGAATCAAG+AGG - chr4_1:27570682-27570701 None:intergenic 40.0%
GATGCAATATAAACAGTGCC+AGG + chr4_1:27570857-27570876 Msa0542480:intron 40.0%
ACAGAAGAACCGCAACTTTA+TGG - chr4_1:27570896-27570915 None:intergenic 40.0%
TTAACTTTCCGGACTTTGTG+TGG + chr4_1:27571245-27571264 Msa0542480:intron 40.0%
ATCAACTTCCACACAAAGTC+CGG - chr4_1:27571256-27571275 None:intergenic 40.0%
!! GTTGATGGTGGTGGTAAAAA+TGG + chr4_1:27571270-27571289 Msa0542480:intron 40.0%
CCCTAGATAAAAAACCATGC+TGG + chr4_1:27571298-27571317 Msa0542480:intron 40.0%
!!! GCCAGCATGGTTTTTTATCT+AGG - chr4_1:27571302-27571321 None:intergenic 40.0%
TGAGCCAATTGACACAGTTT+AGG - chr4_1:27571502-27571521 None:intergenic 40.0%
! GTGTCAATTGGCTCAAGAAA+TGG + chr4_1:27571507-27571526 Msa0542480:CDS 40.0%
! GTCAATTGGCTCAAGAAATG+GGG + chr4_1:27571509-27571528 Msa0542480:CDS 40.0%
! TCAATTGGCTCAAGAAATGG+GGG + chr4_1:27571510-27571529 Msa0542480:CDS 40.0%
ACTACAAGCTCTATCCTACA+TGG + chr4_1:27571567-27571586 Msa0542480:CDS 40.0%
AGAACAAAGCAGTACCATGT+AGG - chr4_1:27571584-27571603 None:intergenic 40.0%
!! GTGTCACTTGTTACATCTTC+TGG + chr4_1:27571606-27571625 Msa0542480:intron 40.0%
! CTCCTATGTTTTCTGTGGTT+AGG + chr4_1:27571685-27571704 Msa0542480:intron 40.0%
CACCTAACCACAGAAAACAT+AGG - chr4_1:27571690-27571709 None:intergenic 40.0%
! TCCTCTTTGGGAAATTCCTT+GGG - chr4_1:27572008-27572027 None:intergenic 40.0%
AAGGAATTTCCCAAAGAGGA+CGG + chr4_1:27572008-27572027 Msa0542480:CDS 40.0%
CAGCCACAAATTATCCTTCT+TGG - chr4_1:27572051-27572070 None:intergenic 40.0%
! TAATTTGTGGCTGACTCTTG+TGG + chr4_1:27572058-27572077 Msa0542480:CDS 40.0%
TGGCTTCATAATAAAGGTGG+AGG - chr4_1:27572131-27572150 None:intergenic 40.0%
! CTCTGGCTTCATAATAAAGG+TGG - chr4_1:27572134-27572153 None:intergenic 40.0%
CACCTTTATTATGAAGCCAG+AGG + chr4_1:27572132-27572151 Msa0542480:intron 40.0%
! GACCTCTGGCTTCATAATAA+AGG - chr4_1:27572137-27572156 None:intergenic 40.0%
!! TCGTGTCTTACCACTTTTAC+AGG + chr4_1:27572177-27572196 Msa0542480:intron 40.0%
!! CGTGTCTTACCACTTTTACA+GGG + chr4_1:27572178-27572197 Msa0542480:intron 40.0%
TAGCAGTATCCCTGTAAAAG+TGG - chr4_1:27572190-27572209 None:intergenic 40.0%
ATGGTCATCTGAAAAAGGAG+AGG + chr4_1:27572328-27572347 Msa0542480:CDS 40.0%
!! GATTGTTTCTTTTGCACACC+AGG + chr4_1:27572460-27572479 Msa0542480:intron 40.0%
! ATTTTTCGCAAGTTGTGCTG+TGG - chr4_1:27572581-27572600 None:intergenic 40.0%
CTGACCTCATTAAGCACTTA+AGG + chr4_1:27572641-27572660 Msa0542480:CDS 40.0%
ACCTCATTAAGCACTTAAGG+AGG + chr4_1:27572644-27572663 Msa0542480:CDS 40.0%
ACCTCCTTAAGTGCTTAATG+AGG - chr4_1:27572648-27572667 None:intergenic 40.0%
TTAGCTGCAGTTTCCAGTAT+TGG + chr4_1:27572679-27572698 Msa0542480:CDS 40.0%
TAGCTGCAGTTTCCAGTATT+GGG + chr4_1:27572680-27572699 Msa0542480:CDS 40.0%
TACTGAACTTCAATCTGCCT+TGG + chr4_1:27572723-27572742 Msa0542480:CDS 40.0%
ACAGCCATCAAATCAAGGAT+GGG - chr4_1:27572864-27572883 None:intergenic 40.0%
TCTGTTTCATCAATTGCTCC+TGG + chr4_1:27573089-27573108 Msa0542480:CDS 40.0%
! TCAGCAGGAAAGCTTTTTAG+GGG + chr4_1:27573251-27573270 Msa0542480:CDS 40.0%
ACAGATCAATAGGAAACCTG+TGG + chr4_1:27573278-27573297 Msa0542480:CDS 40.0%
ATCAATAGGAAACCTGTGGA+AGG + chr4_1:27573282-27573301 Msa0542480:CDS 40.0%
GAAAAGCTGTAAACACGGTA+TGG - chr4_1:27573351-27573370 None:intergenic 40.0%
CATCGGAAAAGCTGTAAACA+CGG - chr4_1:27573356-27573375 None:intergenic 40.0%
!!! TTGGTTTTTTCCCCAACAAC+GGG + chr4_1:27573513-27573532 Msa0542480:intron 40.0%
! TATTTGAAGTCCCCGTTGTT+GGG - chr4_1:27573527-27573546 None:intergenic 40.0%
! ATATTTGAAGTCCCCGTTGT+TGG - chr4_1:27573528-27573547 None:intergenic 40.0%
AAGAAAGCAAGAGACTCACT+TGG - chr4_1:27573629-27573648 None:intergenic 40.0%
GTCTCTTGCTTTCTTCAATC+TGG + chr4_1:27573634-27573653 Msa0542480:CDS 40.0%
TTGAGTGATAAGGTGGTTTG+GGG - chr4_1:27573967-27573986 None:intergenic 40.0%
CATTGAGTGATAAGGTGGTT+TGG - chr4_1:27573969-27573988 None:intergenic 40.0%
TATAGCCGTTGTTCTGATAC+AGG - chr4_1:27574168-27574187 None:intergenic 40.0%
TAACCTATCCAAGTCCATGA+TGG + chr4_1:27574423-27574442 Msa0542480:intron 40.0%
AAACCATCATGGACTTGGAT+AGG - chr4_1:27574429-27574448 None:intergenic 40.0%
TCTTACGAAAGCCAAGTAAC+TGG - chr4_1:27574472-27574491 None:intergenic 40.0%
GTCCAATGAAATGCTCATGA+GGG - chr4_1:27574514-27574533 None:intergenic 40.0%
AGCATTTCATTGGACCAAGA+AGG + chr4_1:27574519-27574538 Msa0542480:CDS 40.0%
ATTCTCTGTGTGGCTGTTAA+AGG + chr4_1:27575110-27575129 Msa0542480:CDS 40.0%
TATAAGCATGTACGATGCCA+AGG - chr4_1:27575171-27575190 None:intergenic 40.0%
CTTATATTCTCTGCCAAGAC+AGG + chr4_1:27575185-27575204 Msa0542480:CDS 40.0%
! ATAACAAGGGCATGAAATGG+GGG - chr4_1:27575291-27575310 None:intergenic 40.0%
TCAAGAAAAGGATCTACCTG+TGG - chr4_1:27575402-27575421 None:intergenic 40.0%
TCATCGACAAGCTCAAGAAA+AGG - chr4_1:27575414-27575433 None:intergenic 40.0%
CAAAATTACCGGAGGTGATA+TGG + chr4_1:27575586-27575605 Msa0542480:intron 40.0%
TGACATTTCCACTTCCAAAG+AGG - chr4_1:27575802-27575821 None:intergenic 40.0%
CAATATCATGACCCTACTCT+TGG + chr4_1:27575820-27575839 Msa0542480:intron 40.0%
AAAGCTTCGTCAGGTTTACT+TGG + chr4_1:27575975-27575994 Msa0542480:intron 40.0%
AAGCTTCGTCAGGTTTACTT+GGG + chr4_1:27575976-27575995 Msa0542480:intron 40.0%
TTATGCTTGACAACTCATCC+TGG - chr4_1:27576289-27576308 None:intergenic 40.0%
! TCCTGATGATGCATATCCAA+TGG + chr4_1:27576334-27576353 Msa0542480:CDS 40.0%
! CCTGATGATGCATATCCAAT+GGG + chr4_1:27576335-27576354 Msa0542480:CDS 40.0%
ATAAACAATGGAGGTCCCAT+TGG - chr4_1:27576353-27576372 None:intergenic 40.0%
AATGGGACCTCCATTGTTTA+TGG + chr4_1:27576352-27576371 Msa0542480:CDS 40.0%
!! CTTGGTGTCTCCATAAACAA+TGG - chr4_1:27576365-27576384 None:intergenic 40.0%
CATTGTTTATGGAGACACCA+AGG + chr4_1:27576363-27576382 Msa0542480:CDS 40.0%
!! TGAGTTCCCAGATTTTGATG+AGG + chr4_1:27576409-27576428 Msa0542480:CDS 40.0%
GTACTGTATCCGCATTTAAG+TGG + chr4_1:27576447-27576466 Msa0542480:intron 40.0%
TCATAAGGTACAGGATTTGC+AGG - chr4_1:27576835-27576854 None:intergenic 40.0%
AGTTTCCCCTCTACCAATTA+AGG + chr4_1:27576978-27576997 Msa0542480:CDS 40.0%
ACTGACCTTAATTGGTAGAG+GGG - chr4_1:27576986-27577005 None:intergenic 40.0%
TTCAAGAACTTCGGTTATGC+TGG + chr4_1:27577073-27577092 Msa0542480:intron 40.0%
AATGTCCTGGTTTAGTGTCT+AGG + chr4_1:27577133-27577152 Msa0542480:intron 40.0%
AATGAGCATACGCTGCATTT+GGG - chr4_1:27577237-27577256 None:intergenic 40.0%
AAATGAGCATACGCTGCATT+TGG - chr4_1:27577238-27577257 None:intergenic 40.0%
!! AGCTTTTGAAGGTATACTGC+AGG + chr4_1:27577445-27577464 Msa0542480:intron 40.0%
GTCTATAGTCATACGAACAC+GGG - chr4_1:27577598-27577617 None:intergenic 40.0%
GTGGTAGTCTCAAAGAATGT+TGG - chr4_1:27577622-27577641 None:intergenic 40.0%
CAAGAATTTATCATAGGGGC+TGG - chr4_1:27577648-27577667 None:intergenic 40.0%
TGAAAGCTGCTGGATGTTAA+TGG + chr4_1:27577666-27577685 Msa0542480:CDS 40.0%
CAGTTACGCATCAACATCGT+TGG - chr4_1:27568288-27568307 None:intergenic 45.0%
! TGGAGGTAGGTTTGTTTGTG+AGG + chr4_1:27568714-27568733 Msa0542480:intron 45.0%
! AGGTAGGTTTGTTTGTGAGG+AGG + chr4_1:27568717-27568736 Msa0542480:intron 45.0%
! TAGGTTTGTTTGTGAGGAGG+AGG + chr4_1:27568720-27568739 Msa0542480:intron 45.0%
! AGGTTTGTTTGTGAGGAGGA+GGG + chr4_1:27568721-27568740 Msa0542480:intron 45.0%
! CAGAGGTAGGTTTGTTTGTG+AGG + chr4_1:27569061-27569080 Msa0542480:intron 45.0%
GGGTCTTAGTAGCAAAATGG+GGG + chr4_1:27569300-27569319 Msa0542480:intron 45.0%
GCAAAATGGGGGTTATGTCA+AGG + chr4_1:27569311-27569330 Msa0542480:exon 45.0%
AAATGGGGGTTATGTCAAGG+AGG + chr4_1:27569314-27569333 Msa0542480:exon 45.0%
AATGGGGGTTATGTCAAGGA+GGG + chr4_1:27569315-27569334 Msa0542480:exon 45.0%
! TTTTCCCTCGTAATCAGGTG+AGG + chr4_1:27569434-27569453 Msa0542480:intron 45.0%
GAAAACCTCACCTGATTACG+AGG - chr4_1:27569442-27569461 None:intergenic 45.0%
!! GTACTTTGGGGTTGTTGGTT+TGG + chr4_1:27569570-27569589 Msa0542480:intron 45.0%
!! ATGATCAAGGTACCGGTATC+TGG + chr4_1:27569670-27569689 Msa0542480:intron 45.0%
!! TGATCAAGGTACCGGTATCT+GGG + chr4_1:27569671-27569690 Msa0542480:intron 45.0%
!! CAGAAGAAAAAGGGTACTGG+AGG + chr4_1:27569945-27569964 Msa0542480:intron 45.0%
GAGGAGAGATAGAAAGAGAG+AGG - chr4_1:27570047-27570066 None:intergenic 45.0%
CATCATGCACATCAGACACT+AGG - chr4_1:27570072-27570091 None:intergenic 45.0%
CTAGTGTCTGATGTGCATGA+TGG + chr4_1:27570070-27570089 Msa0542480:intron 45.0%
!!! TGATGGTTGCTGTTTTTGGC+AGG + chr4_1:27570087-27570106 Msa0542480:intron 45.0%
! AAGGGAGGAAGTTTTCTCGT+TGG - chr4_1:27570697-27570716 None:intergenic 45.0%
GAGATGGATGCAGGAGTTAA+GGG - chr4_1:27570715-27570734 None:intergenic 45.0%
TGAGATGGATGCAGGAGTTA+AGG - chr4_1:27570716-27570735 None:intergenic 45.0%
CAGTAACTTGAGATGGATGC+AGG - chr4_1:27570724-27570743 None:intergenic 45.0%
!!! ATCTTGCAGGCCACTTTTTG+CGG + chr4_1:27570984-27571003 Msa0542480:intron 45.0%
GGACTTTGTGTGGAAGTTGA+TGG + chr4_1:27571255-27571274 Msa0542480:intron 45.0%
!! CTTTGTGTGGAAGTTGATGG+TGG + chr4_1:27571258-27571277 Msa0542480:intron 45.0%
ATCATCACCAAAAGCCAGCA+TGG - chr4_1:27571315-27571334 None:intergenic 45.0%
TGTGGTTAGGTGCGTTTCAT+GGG + chr4_1:27571698-27571717 Msa0542480:intron 45.0%
! CCTCTTTGGGAAATTCCTTG+GGG - chr4_1:27572007-27572026 None:intergenic 45.0%
! GTCCTCTTTGGGAAATTCCT+TGG - chr4_1:27572009-27572028 None:intergenic 45.0%
GTTAAAGAGCCGTCCTCTTT+GGG - chr4_1:27572020-27572039 None:intergenic 45.0%
TGTTAAAGAGCCGTCCTCTT+TGG - chr4_1:27572021-27572040 None:intergenic 45.0%
CAGGGATACTGCTAAAGATC+CGG + chr4_1:27572196-27572215 Msa0542480:intron 45.0%
CTGCTAAAGATCCGGCATAT+TGG + chr4_1:27572204-27572223 Msa0542480:CDS 45.0%
AGATCCGGCATATTGGTCAA+AGG + chr4_1:27572211-27572230 Msa0542480:CDS 45.0%
CAAGCCTTTGACCAATATGC+CGG - chr4_1:27572218-27572237 None:intergenic 45.0%
! AGGACCCATCCTTGATTTGA+TGG + chr4_1:27572857-27572876 Msa0542480:CDS 45.0%
CACAGCCATCAAATCAAGGA+TGG - chr4_1:27572865-27572884 None:intergenic 45.0%
! CATCCTTGATTTGATGGCTG+TGG + chr4_1:27572863-27572882 Msa0542480:CDS 45.0%
ACACCACAGCCATCAAATCA+AGG - chr4_1:27572869-27572888 None:intergenic 45.0%
GTGATATGACACGTTAGGGA+TGG - chr4_1:27572970-27572989 None:intergenic 45.0%
CTAGAGCCGAGCATATAGAA+AGG - chr4_1:27573029-27573048 None:intergenic 45.0%
ATAACTCTTGTGTCCGTTCC+AGG + chr4_1:27573053-27573072 Msa0542480:intron 45.0%
TCATCAATTGCTCCTGGTGA+TGG + chr4_1:27573095-27573114 Msa0542480:CDS 45.0%
CTGACCACGAAACACGAATT+GGG + chr4_1:27573124-27573143 Msa0542480:CDS 45.0%
TGACCACGAAACACGAATTG+GGG + chr4_1:27573125-27573144 Msa0542480:CDS 45.0%
AACTGGGGAGAAAACAGAGA+TGG - chr4_1:27573180-27573199 None:intergenic 45.0%
TGAATCAAGAGGCTCTCACT+TGG - chr4_1:27573234-27573253 None:intergenic 45.0%
AGCTTTCCTGCTGAATCAAG+AGG - chr4_1:27573245-27573264 None:intergenic 45.0%
TAGGGGCAGAACAGATCAAT+AGG + chr4_1:27573268-27573287 Msa0542480:CDS 45.0%
AATAGGAAACCTGTGGAAGG+AGG + chr4_1:27573285-27573304 Msa0542480:CDS 45.0%
ATAGGAAACCTGTGGAAGGA+GGG + chr4_1:27573286-27573305 Msa0542480:CDS 45.0%
! CAGTAGTTGATGTCAGCAGT+AGG + chr4_1:27573310-27573329 Msa0542480:CDS 45.0%
AGCTGTAAACACGGTATGGA+AGG - chr4_1:27573347-27573366 None:intergenic 45.0%
!!! TGGTTTTTTCCCCAACAACG+GGG + chr4_1:27573514-27573533 Msa0542480:intron 45.0%
! ATTTGAAGTCCCCGTTGTTG+GGG - chr4_1:27573526-27573545 None:intergenic 45.0%
GCTTTCTTCAATCTGGGTTC+AGG + chr4_1:27573641-27573660 Msa0542480:CDS 45.0%
CAGGCAACATCTATGGACAA+TGG + chr4_1:27573660-27573679 Msa0542480:CDS 45.0%
AACATCTATGGACAATGGCC+CGG + chr4_1:27573665-27573684 Msa0542480:CDS 45.0%
CACTCGTTCAAAGGTGAGAT+TGG + chr4_1:27573734-27573753 Msa0542480:intron 45.0%
GAATGGCAAATGTTAGTGGG+TGG + chr4_1:27573895-27573914 Msa0542480:intron 45.0%
ACAGGAATAACCTAGTTGCC+TGG - chr4_1:27574150-27574169 None:intergenic 45.0%
TCCACAGACATCCAGTTACT+TGG + chr4_1:27574458-27574477 Msa0542480:intron 45.0%
CTCCCTCATGAGCATTTCAT+TGG + chr4_1:27574509-27574528 Msa0542480:CDS 45.0%
GGTCCAATGAAATGCTCATG+AGG - chr4_1:27574515-27574534 None:intergenic 45.0%
!! AATGTCGAGAGGTGCTTATG+AGG - chr4_1:27574718-27574737 None:intergenic 45.0%
AAGTGCTCAAGAATGTCGAG+AGG - chr4_1:27574729-27574748 None:intergenic 45.0%
TGACCTGATCATTCTCTGTG+TGG + chr4_1:27575100-27575119 Msa0542480:CDS 45.0%
CAGGAGGTCTCTATTTACCT+TGG + chr4_1:27575151-27575170 Msa0542480:CDS 45.0%
CTCAGGTAAATTGCCTGTCT+TGG - chr4_1:27575201-27575220 None:intergenic 45.0%
TTGAGCTTGTCGATGATGTC+AGG + chr4_1:27575418-27575437 Msa0542480:CDS 45.0%
AGGATATAGCCAGGCTTAGT+TGG + chr4_1:27575641-27575660 Msa0542480:intron 45.0%
GGATATAGCCAGGCTTAGTT+GGG + chr4_1:27575642-27575661 Msa0542480:intron 45.0%
GAGGCAGCCCTCATAATTTA+TGG - chr4_1:27575883-27575902 None:intergenic 45.0%
GCACATGCACACATTTATCC+TGG + chr4_1:27576108-27576127 Msa0542480:intron 45.0%
TATTAGGTGTCAGCAGAGCA+TGG + chr4_1:27576186-27576205 Msa0542480:intron 45.0%
AAAATGGCGGCAGAGTTGTT+TGG + chr4_1:27576219-27576238 Msa0542480:intron 45.0%
AAATGGCGGCAGAGTTGTTT+GGG + chr4_1:27576220-27576239 Msa0542480:intron 45.0%
CCCATTGGATATGCATCATC+AGG - chr4_1:27576338-27576357 None:intergenic 45.0%
GGTGTCTCCATAAACAATGG+AGG - chr4_1:27576362-27576381 None:intergenic 45.0%
! CTTTGATGGACGAAGAGACT+GGG + chr4_1:27576531-27576550 Msa0542480:CDS 45.0%
GACAGATTTCCACTTGGTTC+AGG - chr4_1:27576557-27576576 None:intergenic 45.0%
CAGTCTGACAGATTTCCACT+TGG - chr4_1:27576563-27576582 None:intergenic 45.0%
AGGTTATCGACAGAGAGCAA+TGG - chr4_1:27576590-27576609 None:intergenic 45.0%
GTACAGGATTTGCAGGAATG+GGG - chr4_1:27576828-27576847 None:intergenic 45.0%
GGTACAGGATTTGCAGGAAT+GGG - chr4_1:27576829-27576848 None:intergenic 45.0%
AGGTACAGGATTTGCAGGAA+TGG - chr4_1:27576830-27576849 None:intergenic 45.0%
!! CCTCACACTGGTTCTTCATT+TGG - chr4_1:27576858-27576877 None:intergenic 45.0%
CCAAATGAAGAACCAGTGTG+AGG + chr4_1:27576855-27576874 Msa0542480:CDS 45.0%
AGTGTGAGGCTCTTGTATCA+GGG + chr4_1:27576869-27576888 Msa0542480:CDS 45.0%
GCGGAAAAGTCAAACTTCCA+TGG - chr4_1:27577018-27577037 None:intergenic 45.0%
!! CTTCGGTTATGCTGGTTTAC+AGG + chr4_1:27577081-27577100 Msa0542480:intron 45.0%
AACTGCCTAGACACTAAACC+AGG - chr4_1:27577141-27577160 None:intergenic 45.0%
TAACTCAGCAGATAGGCTGA+AGG - chr4_1:27577287-27577306 None:intergenic 45.0%
! ATGTGTCATTGTGCAGACAC+TGG + chr4_1:27577508-27577527 Msa0542480:intron 45.0%
! TGTGCAGACACTGGAGTATT+CGG + chr4_1:27577517-27577536 Msa0542480:intron 45.0%
! AATTTATCATAGGGGCTGGC+AGG - chr4_1:27577644-27577663 None:intergenic 45.0%
TGCTGGATGTTAATGGTGCT+AGG + chr4_1:27577673-27577692 Msa0542480:exon 45.0%
TTGTCTCATCGCCACATAGT+AGG + chr4_1:27577786-27577805 Msa0542480:three_prime_UTR 45.0%
AGGGATAAGTTGTCATGCAG+TGG - chr4_1:27577858-27577877 None:intergenic 45.0%
!!! TTCTGGGGGCAGCTACTTTT+TGG - chr4_1:27568226-27568245 None:intergenic 50.0%
TGTTTGTGAGGAGGAGGGTT+TGG + chr4_1:27568726-27568745 Msa0542480:intron 50.0%
GAGAAGGACAAACACAGCAG+AGG - chr4_1:27569360-27569379 None:intergenic 50.0%
CTCGAGCTAGAACGAAGAGA+AGG - chr4_1:27569376-27569395 None:intergenic 50.0%
!! TCGTTCTAGCTCGAGACAAC+CGG + chr4_1:27569381-27569400 Msa0542480:CDS 50.0%
GCACATCAGACACTAGGAAG+AGG - chr4_1:27570066-27570085 None:intergenic 50.0%
ATGGATGCAGGAGTTAAGGG+AGG - chr4_1:27570712-27570731 None:intergenic 50.0%
!!! TCTTGCAGGCCACTTTTTGC+GGG + chr4_1:27570985-27571004 Msa0542480:intron 50.0%
!! TGTGTGGAAGTTGATGGTGG+TGG + chr4_1:27571261-27571280 Msa0542480:intron 50.0%
GAGCTTGTAGTCCAGCTGAA+CGG - chr4_1:27571558-27571577 None:intergenic 50.0%
CTGTGGTTAGGTGCGTTTCA+TGG + chr4_1:27571697-27571716 Msa0542480:intron 50.0%
TGGGGTGATTGGAGCTAGAT+TGG - chr4_1:27571989-27572008 None:intergenic 50.0%
! ATCTAGCTCCAATCACCCCA+AGG + chr4_1:27571989-27572008 Msa0542480:CDS 50.0%
GGGAAATTCCTTGGGGTGAT+TGG - chr4_1:27572000-27572019 None:intergenic 50.0%
CCCCAAGGAATTTCCCAAAG+AGG + chr4_1:27572004-27572023 Msa0542480:CDS 50.0%
CAAGGGAAGCTACAACTCTG+CGG + chr4_1:27572261-27572280 Msa0542480:CDS 50.0%
! GAACAACAGGTTGGGGATGT+AGG + chr4_1:27572837-27572856 Msa0542480:intron 50.0%
CCAATTCGTGTTTCGTGGTC+AGG - chr4_1:27573126-27573145 None:intergenic 50.0%
CCTGACCACGAAACACGAAT+TGG + chr4_1:27573123-27573142 Msa0542480:CDS 50.0%
TGAGAGCCTCTTGATTCAGC+AGG + chr4_1:27573236-27573255 Msa0542480:CDS 50.0%
TAGGAAACCTGTGGAAGGAG+GGG + chr4_1:27573287-27573306 Msa0542480:CDS 50.0%
CTGGGTTCAGGCAACATCTA+TGG + chr4_1:27573653-27573672 Msa0542480:CDS 50.0%
CCATAGCCTCAAAATTCGCC+GGG - chr4_1:27573686-27573705 None:intergenic 50.0%
GCCATAGCCTCAAAATTCGC+CGG - chr4_1:27573687-27573706 None:intergenic 50.0%
GGGAGGAGGAACATAAGTGT+TGG - chr4_1:27573947-27573966 None:intergenic 50.0%
! AGTGATAAGGTGGTTTGGGG+AGG - chr4_1:27573964-27573983 None:intergenic 50.0%
GCCAAGTAACTGGATGTCTG+TGG - chr4_1:27574462-27574481 None:intergenic 50.0%
TCATGAGGGAGAATGCCAGT+TGG - chr4_1:27574500-27574519 None:intergenic 50.0%
CTAGGATGCAGAAGAGATGC+AGG - chr4_1:27574692-27574711 None:intergenic 50.0%
CTGCATCTCTTCTGCATCCT+AGG + chr4_1:27574690-27574709 Msa0542480:intron 50.0%
CAGCCACACAGAGAATGATC+AGG - chr4_1:27575106-27575125 None:intergenic 50.0%
CTCTGTGTGGCTGTTAAAGG+AGG + chr4_1:27575113-27575132 Msa0542480:CDS 50.0%
GAGGTTTACAACCATCTCGC+AGG + chr4_1:27575132-27575151 Msa0542480:CDS 50.0%
GTTTACAACCATCTCGCAGG+AGG + chr4_1:27575135-27575154 Msa0542480:CDS 50.0%
AATAGAGACCTCCTGCGAGA+TGG - chr4_1:27575146-27575165 None:intergenic 50.0%
ATGGGGGTAGGAAGAGGTTA+GGG - chr4_1:27575275-27575294 None:intergenic 50.0%
AATGGGGGTAGGAAGAGGTT+AGG - chr4_1:27575276-27575295 None:intergenic 50.0%
CATGAAATGGGGGTAGGAAG+AGG - chr4_1:27575281-27575300 None:intergenic 50.0%
TGTCGATGATGTCAGGCTAC+AGG + chr4_1:27575425-27575444 Msa0542480:CDS 50.0%
! AAGGTACTCCCAACTAAGCC+TGG - chr4_1:27575653-27575672 None:intergenic 50.0%
CCATCGTTTGGGCATAAGCA+TGG - chr4_1:27575771-27575790 None:intergenic 50.0%
CCATGCTTATGCCCAAACGA+TGG + chr4_1:27575768-27575787 Msa0542480:intron 50.0%
AGGCAACTCGACCATCGTTT+GGG - chr4_1:27575782-27575801 None:intergenic 50.0%
! TCGAGTTGCCTCTTTGGAAG+TGG + chr4_1:27575791-27575810 Msa0542480:intron 50.0%
AATGGCGGCAGAGTTGTTTG+GGG + chr4_1:27576221-27576240 Msa0542480:intron 50.0%
GCAACTGGAGAACATGTCCT+TGG - chr4_1:27576383-27576402 None:intergenic 50.0%
GGGAACTCAATCTGAGCAAC+TGG - chr4_1:27576398-27576417 None:intergenic 50.0%
! GCTTTGATGGACGAAGAGAC+TGG + chr4_1:27576530-27576549 Msa0542480:CDS 50.0%
!!! GACAGGTTTTGGAAACCGCA+CGG + chr4_1:27576788-27576807 Msa0542480:intron 50.0%
CTGATACAAGAGCCTCACAC+TGG - chr4_1:27576870-27576889 None:intergenic 50.0%
CAGTGTGAGGCTCTTGTATC+AGG + chr4_1:27576868-27576887 Msa0542480:CDS 50.0%
!!! TCGCAGTTTTAAGCACCAGC+AGG + chr4_1:27576915-27576934 Msa0542480:CDS 50.0%
CTAATGCTCTAGTCTCCTGC+TGG - chr4_1:27576933-27576952 None:intergenic 50.0%
TACGCTGCATTTGGGTCAGT+GGG - chr4_1:27577229-27577248 None:intergenic 50.0%
ATACGCTGCATTTGGGTCAG+TGG - chr4_1:27577230-27577249 None:intergenic 50.0%
! CAGACACTGGAGTATTCGGA+AGG + chr4_1:27577521-27577540 Msa0542480:intron 50.0%
! TTCGGAAGGCGATCTGAAGT+TGG + chr4_1:27577535-27577554 Msa0542480:CDS 50.0%
AACACAGCAGAGGTTGCCAC+AGG - chr4_1:27569350-27569369 None:intergenic 55.0%
GCTTTACGTCTCCGTTCAGC+TGG + chr4_1:27571544-27571563 Msa0542480:CDS 55.0%
! TTGTGGCTGACTCTTGTGGC+AGG + chr4_1:27572062-27572081 Msa0542480:CDS 55.0%
! TGTGGCTGACTCTTGTGGCA+GGG + chr4_1:27572063-27572082 Msa0542480:CDS 55.0%
TGACTCTTGTGGCAGGGACT+GGG + chr4_1:27572069-27572088 Msa0542480:CDS 55.0%
GCATCAGGGAAAGCCTGGAA+CGG - chr4_1:27573069-27573088 None:intergenic 55.0%
! ACAGAGCATCAGGGAAAGCC+TGG - chr4_1:27573074-27573093 None:intergenic 55.0%
! CAATGGCCCGGCGAATTTTG+AGG + chr4_1:27573677-27573696 Msa0542480:CDS 55.0%
!!! CCCGGCGAATTTTGAGGCTA+TGG + chr4_1:27573683-27573702 Msa0542480:CDS 55.0%
! GATAAGGTGGTTTGGGGAGG+AGG - chr4_1:27573961-27573980 None:intergenic 55.0%
GAGATGCAGGCAGTGGTTTG+AGG - chr4_1:27574679-27574698 None:intergenic 55.0%
TGCAGAAGAGATGCAGGCAG+TGG - chr4_1:27574686-27574705 None:intergenic 55.0%
! GAGGTGCTTATGAGGCTCCT+AGG - chr4_1:27574710-27574729 None:intergenic 55.0%
! CAAGGGCATGAAATGGGGGT+AGG - chr4_1:27575287-27575306 None:intergenic 55.0%
! GTCACTTTCGGCCGTAGAGT+TGG + chr4_1:27575512-27575531 Msa0542480:CDS 55.0%
GAGGCAACTCGACCATCGTT+TGG - chr4_1:27575783-27575802 None:intergenic 55.0%
! CGATGGTCGAGTTGCCTCTT+TGG + chr4_1:27575785-27575804 Msa0542480:intron 55.0%
AGCTAGCTCATCCTCTGCTG+AGG - chr4_1:27575902-27575921 None:intergenic 55.0%
! TGTGGCTTCGGCAGCTTTGA+TGG + chr4_1:27576517-27576536 Msa0542480:CDS 55.0%
TTTGGAAACCGCACGGCAAG+TGG + chr4_1:27576795-27576814 Msa0542480:CDS 55.0%
GAAACTAGCCACTTGCCGTG+CGG - chr4_1:27576806-27576825 None:intergenic 55.0%
ACGCTGCATTTGGGTCAGTG+GGG - chr4_1:27577228-27577247 None:intergenic 55.0%
! TTATCATAGGGGCTGGCAGG+TGG - chr4_1:27577641-27577660 None:intergenic 55.0%
CTGACTCTTGTGGCAGGGAC+TGG + chr4_1:27572068-27572087 Msa0542480:CDS 60.0%
GACTCTTGTGGCAGGGACTG+GGG + chr4_1:27572070-27572089 Msa0542480:CDS 60.0%
GGTCAGGATGAGCCATCACC+AGG - chr4_1:27573110-27573129 None:intergenic 60.0%
GCGCCCCAATTCGTGTTTCG+TGG - chr4_1:27573131-27573150 None:intergenic 60.0%
ACTACTGCCCCTCCTTCCAC+AGG - chr4_1:27573297-27573316 None:intergenic 60.0%
TATGAGGGCTGCCTCAGCAG+AGG + chr4_1:27575888-27575907 Msa0542480:intron 60.0%
GAGACTGGGCCTGAACCAAG+TGG + chr4_1:27576545-27576564 Msa0542480:CDS 60.0%
AGGAGGGTTGTGCCTGCCTG+TGG + chr4_1:27569331-27569350 Msa0542480:CDS 65.0%
CAGCAGAGGTTGCCACAGGC+AGG - chr4_1:27569346-27569365 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 27568207 27577933 27568207 ID=Msa0542480;Name=Msa0542480
chr4_1 mRNA 27568207 27577933 27568207 ID=Msa0542480-mRNA-1;Parent=Msa0542480;Name=Msa0542480-mRNA-1;_AED=0.12;_eAED=0.12;_QI=237|0.95|0.95|1|0.9|0.85|21|248|985
chr4_1 exon 27568207 27568358 27568207 ID=Msa0542480-mRNA-1:exon:7412;Parent=Msa0542480-mRNA-1
chr4_1 exon 27568446 27568515 27568446 ID=Msa0542480-mRNA-1:exon:7413;Parent=Msa0542480-mRNA-1
chr4_1 exon 27569301 27569450 27569301 ID=Msa0542480-mRNA-1:exon:7414;Parent=Msa0542480-mRNA-1
chr4_1 exon 27570109 27570183 27570109 ID=Msa0542480-mRNA-1:exon:7415;Parent=Msa0542480-mRNA-1
chr4_1 exon 27570397 27570512 27570397 ID=Msa0542480-mRNA-1:exon:7416;Parent=Msa0542480-mRNA-1
chr4_1 exon 27570993 27571107 27570993 ID=Msa0542480-mRNA-1:exon:7417;Parent=Msa0542480-mRNA-1
chr4_1 exon 27571460 27571588 27571460 ID=Msa0542480-mRNA-1:exon:7418;Parent=Msa0542480-mRNA-1
chr4_1 exon 27571707 27571754 27571707 ID=Msa0542480-mRNA-1:exon:7419;Parent=Msa0542480-mRNA-1
chr4_1 exon 27571951 27572105 27571951 ID=Msa0542480-mRNA-1:exon:7420;Parent=Msa0542480-mRNA-1
chr4_1 exon 27572199 27572395 27572199 ID=Msa0542480-mRNA-1:exon:7421;Parent=Msa0542480-mRNA-1
chr4_1 exon 27572482 27572774 27572482 ID=Msa0542480-mRNA-1:exon:7422;Parent=Msa0542480-mRNA-1
chr4_1 exon 27572846 27572995 27572846 ID=Msa0542480-mRNA-1:exon:7423;Parent=Msa0542480-mRNA-1
chr4_1 exon 27573075 27573395 27573075 ID=Msa0542480-mRNA-1:exon:7424;Parent=Msa0542480-mRNA-1
chr4_1 exon 27573597 27573746 27573597 ID=Msa0542480-mRNA-1:exon:7425;Parent=Msa0542480-mRNA-1
chr4_1 exon 27574465 27574540 27574465 ID=Msa0542480-mRNA-1:exon:7426;Parent=Msa0542480-mRNA-1
chr4_1 exon 27575096 27575259 27575096 ID=Msa0542480-mRNA-1:exon:7427;Parent=Msa0542480-mRNA-1
chr4_1 exon 27575405 27575599 27575405 ID=Msa0542480-mRNA-1:exon:7428;Parent=Msa0542480-mRNA-1
chr4_1 exon 27576290 27576430 27576290 ID=Msa0542480-mRNA-1:exon:7429;Parent=Msa0542480-mRNA-1
chr4_1 exon 27576515 27576643 27576515 ID=Msa0542480-mRNA-1:exon:7430;Parent=Msa0542480-mRNA-1
chr4_1 exon 27576793 27576999 27576793 ID=Msa0542480-mRNA-1:exon:7431;Parent=Msa0542480-mRNA-1
chr4_1 exon 27577524 27577933 27577524 ID=Msa0542480-mRNA-1:exon:7432;Parent=Msa0542480-mRNA-1
chr4_1 five_prime_UTR 27568207 27568358 27568207 ID=Msa0542480-mRNA-1:five_prime_utr;Parent=Msa0542480-mRNA-1
chr4_1 five_prime_UTR 27568446 27568515 27568446 ID=Msa0542480-mRNA-1:five_prime_utr;Parent=Msa0542480-mRNA-1
chr4_1 five_prime_UTR 27569301 27569315 27569301 ID=Msa0542480-mRNA-1:five_prime_utr;Parent=Msa0542480-mRNA-1
chr4_1 CDS 27569316 27569450 27569316 ID=Msa0542480-mRNA-1:cds;Parent=Msa0542480-mRNA-1
chr4_1 CDS 27570109 27570183 27570109 ID=Msa0542480-mRNA-1:cds;Parent=Msa0542480-mRNA-1
chr4_1 CDS 27570397 27570512 27570397 ID=Msa0542480-mRNA-1:cds;Parent=Msa0542480-mRNA-1
chr4_1 CDS 27570993 27571107 27570993 ID=Msa0542480-mRNA-1:cds;Parent=Msa0542480-mRNA-1
chr4_1 CDS 27571460 27571588 27571460 ID=Msa0542480-mRNA-1:cds;Parent=Msa0542480-mRNA-1
chr4_1 CDS 27571707 27571754 27571707 ID=Msa0542480-mRNA-1:cds;Parent=Msa0542480-mRNA-1
chr4_1 CDS 27571951 27572105 27571951 ID=Msa0542480-mRNA-1:cds;Parent=Msa0542480-mRNA-1
chr4_1 CDS 27572199 27572395 27572199 ID=Msa0542480-mRNA-1:cds;Parent=Msa0542480-mRNA-1
chr4_1 CDS 27572482 27572774 27572482 ID=Msa0542480-mRNA-1:cds;Parent=Msa0542480-mRNA-1
chr4_1 CDS 27572846 27572995 27572846 ID=Msa0542480-mRNA-1:cds;Parent=Msa0542480-mRNA-1
chr4_1 CDS 27573075 27573395 27573075 ID=Msa0542480-mRNA-1:cds;Parent=Msa0542480-mRNA-1
chr4_1 CDS 27573597 27573746 27573597 ID=Msa0542480-mRNA-1:cds;Parent=Msa0542480-mRNA-1
chr4_1 CDS 27574465 27574540 27574465 ID=Msa0542480-mRNA-1:cds;Parent=Msa0542480-mRNA-1
chr4_1 CDS 27575096 27575259 27575096 ID=Msa0542480-mRNA-1:cds;Parent=Msa0542480-mRNA-1
chr4_1 CDS 27575405 27575599 27575405 ID=Msa0542480-mRNA-1:cds;Parent=Msa0542480-mRNA-1
chr4_1 CDS 27576290 27576430 27576290 ID=Msa0542480-mRNA-1:cds;Parent=Msa0542480-mRNA-1
chr4_1 CDS 27576515 27576643 27576515 ID=Msa0542480-mRNA-1:cds;Parent=Msa0542480-mRNA-1
chr4_1 CDS 27576793 27576999 27576793 ID=Msa0542480-mRNA-1:cds;Parent=Msa0542480-mRNA-1
chr4_1 CDS 27577524 27577685 27577524 ID=Msa0542480-mRNA-1:cds;Parent=Msa0542480-mRNA-1
chr4_1 three_prime_UTR 27577686 27577933 27577686 ID=Msa0542480-mRNA-1:three_prime_utr;Parent=Msa0542480-mRNA-1
Gene Sequence

>Msa0542480

ATGGGGGTTATGTCAAGGAGGGTTGTGCCTGCCTGTGGCAACCTCTGCTGTGTTTGTCCTTCTCTTCGTTCTAGCTCGAGACAACCGGTGAAGCGTTACAAGAAGTTGTTGGCTGAAATTTTCCCTCGTAATCAGGTAGCTGAACCTAATGATAGAAAAATTGGAAAGCTATGTGACTATGCTTCAAAAAATCCGTTGAGAATTCCTAAGATTACTGATAACTTGGAGCAAATATGTTACAAGGATTTGCGTAATGAAGTCTTTGGTTCAGTGAAAGTTGTCTTGTGCATATACAGAAAATTCTTATCGTCATGTAAGGAGCAGATGCCACTTTTTGCGGGTAGTTTATTAGAGATTGTTCGGACTCTTTTAGAACAAACTCGAACAGATGAAATCAGGATCATAGGCTGCAACACTCTTTTTGATTTTATAGATTGCCAGACAGATGGTACATACATGTTCAATTTAGAGGGTTTTATTCCTAAACTGTGTCAATTGGCTCAAGAAATGGGGGAAGATGAACGAGCTTTACGTCTCCGTTCAGCTGGACTACAAGCTCTATCCTACATGGTGCGTTTCATGGGTGAGCAATCACATCTTTCAATGGACTTGGATGAAATCATGTTAGTGACTTTGGAGAATTACATGGGTTTCCAATCTAGCTCCAATCACCCCAAGGAATTTCCCAAAGAGGACGGCTCTTTAACAGATATCTCCAAGAAGGATAATTTGTGGCTGACTCTTGTGGCAGGGACTGGGGTAGACTCTATGTTGGATACTGCTAAAGATCCGGCATATTGGTCAAAGGCTTGCTTGTATAATATGGTCAAACTGGCAAGGGAAGCTACAACTCTGCGGCGTGTCCTTGAACCTCTTTTTCATTATTTTGATACTCAAAATCAATGGTCATCTGAAAAAGGAGAGGCTGTTCGTGTTTTGATGTATTTACAATCTCTTTTAGAAGATTCAGGAGATAACTCTTATCTTCTGTTGTCCATTTTGGTCAAGCACTTTGATCATAAGAATGTTTCTAAGCAGCCTATCCTTCAGATTAATATTATCAACACCACAGCACAACTTGCGAAAAATGTGAAGCAAAAAGCTTCAGTTGCAATAATTGGTGCAATATCTGACCTCATTAAGCACTTAAGGAGGTGCCTACAAAATTTAGCTGCAGTTTCCAGTATTGGGAATGATGAGTATAAGTTGAATACTGAACTTCAATCTGCCTTGGAAATGTGTATATTACAACTTTCAAACAAGGTTGGGGATGTAGGACCCATCCTTGATTTGATGGCTGTGGTGTTAGAGAATATCTCAACTACGACCATTGTAGCAAGAACAACAATCTATGCTGTTTATCAAACTGCAAAGTTAGTTATATCCATCCCTAACGTGTCATATCACAAGAAGGCTTTCCCTGATGCTCTGTTTCATCAATTGCTCCTGGTGATGGCTCATCCTGACCACGAAACACGAATTGGGGCGCATAGTGTCTTTTCTACAGTGCTTATGCCATCTCTGTTTTCTCCCCAGTTAGACCATAAAACAATGATGGCTGAGAAGGTACCAAGTGAGAGCCTCTTGATTCAGCAGGAAAGCTTTTTAGGGGCAGAACAGATCAATAGGAAACCTGTGGAAGGAGGGGCAGTAGTTGATGTCAGCAGTAGGAAATATAGAGTCCTTCCATACCGTGTTTACAGCTTTTCCGATGCTCTAAATCTTGGGAAAAATGAGCTAAGTTCTTTTCGGTTAAGCAGTCACCAAGTGAGTCTCTTGCTTTCTTCAATCTGGGTTCAGGCAACATCTATGGACAATGGCCCGGCGAATTTTGAGGCTATGGCTCACACTTTTAGCATTGCTTTATTGTTCACTCGTTCAAAGACATCCAGTTACTTGGCTTTCGTAAGATGTTTCCAACTGGCATTCTCCCTCATGAGCATTTCATTGGACCAAGAAGTTTCTGACCTGATCATTCTCTGTGTGGCTGTTAAAGGAGGTTTACAACCATCTCGCAGGAGGTCTCTATTTACCTTGGCATCGTACATGCTTATATTCTCTGCCAAGACAGGCAATTTACCTGAGCTAATTCCAATAATTAAAGCATCCCTGATATATTCAACAGTAGATCCTTTTCTTGAGCTTGTCGATGATGTCAGGCTACAGGCTGTTAATATAGAATCAGAGAAGATAATCTATGGATCACAAGAAGATGATGTTGCAGCTATTAAGTCACTTTCGGCCGTAGAGTTGGATGATAAGAAGTTGAAAGAAACTGTAATCTCGTACTTCCTGACCAAATATTCAAAATTACCGGAGGATGAGTTGTCAAGCATAAAGAAACAACTTGCACAGGGGTTTTCTCCTGATGATGCATATCCAATGGGACCTCCATTGTTTATGGAGACACCAAGGACATGTTCTCCAGTTGCTCAGATTGAGTTCCCAGATTTTGATGAGATTGTGGCTTCGGCAGCTTTGATGGACGAAGAGACTGGGCCTGAACCAAGTGGAAATCTGTCAGACTGCAAACCATTGCTCTCTGTCGATAACCTGACGATTTTAAGCGTTAATCAACTCTTAGAATCGGTTTTGGAAACCGCACGGCAAGTGGCTAGTTTCCCCATTCCTGCAAATCCTGTACCTTATGACCAAATGAAGAACCAGTGTGAGGCTCTTGTATCAGGGAAGCAACAGAAGATGTCAGTTCTTCGCAGTTTTAAGCACCAGCAGGAGACTAGAGCATTAGTTCTTTCAAGTGCAATTGAAACAAAAGTTTCCCCTCTACCAATTAAGACACTGGAGTATTCGGAAGGCGATCTGAAGTTGGTGAGTCAAGAGCAATTACAGACTCTGTATGAAGTACGCCCGTGTTCGTATGACTATAGACACCAACATTCTTTGAGACTACCACCTGCCAGCCCCTATGATAAATTCTTGAAAGCTGCTGGATGTTAA
Protein sequence

>Msa0542480

MGVMSRRVVPACGNLCCVCPSLRSSSRQPVKRYKKLLAEIFPRNQVAEPNDRKIGKLCDYASKNPLRIPKITDNLEQICYKDLRNEVFGSVKVVLCIYRKFLSSCKEQMPLFAGSLLEIVRTLLEQTRTDEIRIIGCNTLFDFIDCQTDGTYMFNLEGFIPKLCQLAQEMGEDERALRLRSAGLQALSYMVRFMGEQSHLSMDLDEIMLVTLENYMGFQSSSNHPKEFPKEDGSLTDISKKDNLWLTLVAGTGVDSMLDTAKDPAYWSKACLYNMVKLAREATTLRRVLEPLFHYFDTQNQWSSEKGEAVRVLMYLQSLLEDSGDNSYLLLSILVKHFDHKNVSKQPILQINIINTTAQLAKNVKQKASVAIIGAISDLIKHLRRCLQNLAAVSSIGNDEYKLNTELQSALEMCILQLSNKVGDVGPILDLMAVVLENISTTTIVARTTIYAVYQTAKLVISIPNVSYHKKAFPDALFHQLLLVMAHPDHETRIGAHSVFSTVLMPSLFSPQLDHKTMMAEKVPSESLLIQQESFLGAEQINRKPVEGGAVVDVSSRKYRVLPYRVYSFSDALNLGKNELSSFRLSSHQVSLLLSSIWVQATSMDNGPANFEAMAHTFSIALLFTRSKTSSYLAFVRCFQLAFSLMSISLDQEVSDLIILCVAVKGGLQPSRRRSLFTLASYMLIFSAKTGNLPELIPIIKASLIYSTVDPFLELVDDVRLQAVNIESEKIIYGSQEDDVAAIKSLSAVELDDKKLKETVISYFLTKYSKLPEDELSSIKKQLAQGFSPDDAYPMGPPLFMETPRTCSPVAQIEFPDFDEIVASAALMDEETGPEPSGNLSDCKPLLSVDNLTILSVNQLLESVLETARQVASFPIPANPVPYDQMKNQCEALVSGKQQKMSVLRSFKHQQETRALVLSSAIETKVSPLPIKTLEYSEGDLKLVSQEQLQTLYEVRPCSYDYRHQHSLRLPPASPYDKFLKAAGC*