AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0618240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0618240 MtrunA17_Chr8g0380121 99.425 348 2 0 1 348 1 348 0.0 715
Msa0618240 MtrunA17_Chr3g0145091 53.763 372 147 7 1 348 1 371 5.19e-127 369
Msa0618240 MtrunA17_Chr4g0035851 51.475 373 155 5 1 348 1 372 9.15e-117 342
Msa0618240 MtrunA17_Chr5g0408971 38.692 367 198 6 1 343 1 364 6.06e-91 276
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0618240 AT4G18060.1 71.795 351 96 1 1 348 1 351 0.0 544
Msa0618240 AT4G34660.1 48.387 372 164 6 1 348 1 368 2.02e-119 349
Msa0618240 AT4G34660.2 45.968 372 150 6 1 348 1 345 1.10e-110 326
Msa0618240 AT4G34660.3 47.578 351 147 5 1 348 1 317 2.11e-110 325
Msa0618240 AT1G31440.1 42.537 268 149 3 1 266 1 265 1.58e-65 214
Msa0618240 AT1G31440.1 52.000 75 32 1 269 343 361 431 1.30e-21 95.5
Msa0618240 AT4G39020.1 46.479 71 37 1 272 341 93 163 4.62e-18 80.9

Find 102 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCTTCTGACCACCCTGTT+TGG 0.277296 4_2:+69131457 None:intergenic
CTAGAGTAGAAATGTATAAT+TGG 0.299207 4_2:+69130861 None:intergenic
ATCAGAAAGAGGAGATTTCT+AGG 0.303405 4_2:-69133071 Msa0618240:intron
AAAGGAGGGTGGTTTCCTTC+TGG 0.310065 4_2:-69131423 Msa0618240:CDS
TTTACCTAGAACTGCCATAT+TGG 0.330252 4_2:+69132963 None:intergenic
GTGCTTATGGTAATGTCTAT+TGG 0.330383 4_2:-69131029 Msa0618240:three_prime_UTR
AGAGAAAACAATGTACTTCT+TGG 0.347005 4_2:-69132490 Msa0618240:CDS
GTTACACAGGTGAGCCAAAC+AGG 0.349387 4_2:-69131471 Msa0618240:intron
TCTCCAGCCATGTTGCTAGA+TGG 0.356206 4_2:+69131375 None:intergenic
CTAGGAGACAAGCACGGGTT+AGG 0.357945 4_2:-69133053 Msa0618240:CDS
GTAGAGGATGGTGGAATTGA+TGG 0.368031 4_2:-69131254 Msa0618240:three_prime_UTR
TCTGAGGAGTGCTGTAGATA+TGG 0.376609 4_2:-69135270 Msa0618240:CDS
GCTAAGGCCGCATCAGTATA+TGG 0.376664 4_2:-69135219 Msa0618240:CDS
AAAGCCAATATGGCAGTTCT+AGG 0.377743 4_2:-69132967 Msa0618240:CDS
ATAACAACATAACATTTGAT+TGG 0.387803 4_2:-69137097 Msa0618240:five_prime_UTR
TGCCTCTGCAGCATGCAGTT+TGG 0.390750 4_2:+69133005 None:intergenic
GCAGGAGCTGAAAGCCAATA+TGG 0.397351 4_2:-69132977 Msa0618240:CDS
CGATTCTTTCTTCTGTCTGT+CGG 0.410684 4_2:+69132545 None:intergenic
CATGGCTGGAGAAGTTTACT+AGG 0.414641 4_2:-69131364 Msa0618240:exon
GCAAGTTGTCAAACAACAAC+AGG 0.420146 4_2:-69137000 Msa0618240:intron
TGCTGCAGAGGCAAAGATGC+AGG 0.422100 4_2:-69132995 Msa0618240:CDS
CTCCAGCCATGTTGCTAGAT+GGG 0.428147 4_2:+69131376 None:intergenic
TCTTATAAGCATATTGAAAC+AGG 0.429719 4_2:-69135419 Msa0618240:intron
AATGATCAATGGCCCACCTT+TGG 0.437837 4_2:-69133987 Msa0618240:CDS
TTGGTTGAATGAAGAATGAT+AGG 0.443623 4_2:-69131010 Msa0618240:three_prime_UTR
AACATATGGAGAAGCTGTAC+AGG 0.447502 4_2:-69136553 Msa0618240:CDS
CTGTACAGGGCCACTCGTGC+CGG 0.450031 4_2:-69136539 Msa0618240:CDS
GATCAATGGCCCACCTTTGG+AGG 0.457825 4_2:-69133984 Msa0618240:CDS
TAGGAGACAAGCACGGGTTA+GGG 0.473006 4_2:-69133052 Msa0618240:CDS
ATTCAAAGAAGATGAACAAA+AGG 0.473270 4_2:-69131280 Msa0618240:three_prime_UTR
GTAATCTGCAAGAGTGGAGT+AGG 0.484711 4_2:-69130966 Msa0618240:three_prime_UTR
TGCTCGCAAACATGTAGAAA+AGG 0.487145 4_2:-69135193 Msa0618240:CDS
TAAAGAAGCTTCGGCTGCAT+TGG 0.487250 4_2:-69132944 Msa0618240:CDS
AGTTCTAGGTAAAGAAGCTT+CGG 0.491125 4_2:-69132953 Msa0618240:CDS
TGTACAGGGCCACTCGTGCC+GGG 0.491956 4_2:-69136538 Msa0618240:CDS
ACAAATCATGTACATTTGAC+AGG 0.500089 4_2:+69130782 None:intergenic
GGAATCTCAAACTGCTGAGC+AGG 0.503789 4_2:-69133031 Msa0618240:CDS
TTACGATGCTGAAACGGAAA+AGG 0.507521 4_2:-69131657 Msa0618240:CDS
GCATCCTTACGATGCTGAAA+CGG 0.514169 4_2:-69131663 Msa0618240:CDS
CCATTGATCATTTGTCTCAA+AGG 0.516154 4_2:+69133998 None:intergenic
GGAGAATGCAATGGTAAAGG+AGG 0.517024 4_2:-69131438 Msa0618240:CDS
ATCCCATCTAGCAACATGGC+TGG 0.518734 4_2:-69131378 Msa0618240:CDS
AGGAGCACGAAGAATTGAAT+CGG 0.522277 4_2:-69135173 Msa0618240:CDS
AATGCAGAGACATCAACATA+TGG 0.529225 4_2:-69136567 Msa0618240:CDS
CCTTTGAGACAAATGATCAA+TGG 0.536520 4_2:-69133998 Msa0618240:CDS
ATTGGAATTTGAGCTAGTGC+AGG 0.543842 4_2:+69130879 None:intergenic
AGCCAAACAGGGTGGTCAGA+AGG 0.549155 4_2:-69131459 Msa0618240:CDS
CGACAGACAGAAGAAAGAAT+CGG 0.549964 4_2:-69132544 Msa0618240:CDS
CAGGGCCACTCGTGCCGGGA+GGG 0.550379 4_2:-69136534 Msa0618240:intron
GATTTCTAGGAGACAAGCAC+GGG 0.551675 4_2:-69133058 Msa0618240:CDS
GATGAACAAAAGGAATGTAG+AGG 0.553167 4_2:-69131270 Msa0618240:three_prime_UTR
TGACTTTATTGTCGTGCGGA+AGG 0.554090 4_2:-69131615 Msa0618240:intron
TTGTTTCCTAAAAGCGTCCA+TGG 0.555831 4_2:+69137040 None:intergenic
GAAGGAGAATGCAATGGTAA+AGG 0.558279 4_2:-69131441 Msa0618240:CDS
GACTATACCGTTGAGCAAGA+TGG 0.558931 4_2:+69133954 None:intergenic
ATAAAACAATTCAGCGGCAG+CGG 0.560251 4_2:-69136629 Msa0618240:CDS
AACAATGTACTTCTTGGCTG+AGG 0.565631 4_2:-69132484 Msa0618240:intron
TTATGAGAGCTCAGATGTTG+TGG 0.566218 4_2:-69136606 Msa0618240:CDS
TATGTAAGTTACCCCACAGC+TGG 0.566545 4_2:+69131181 None:intergenic
TGGCGAGCATCCTCCAAAGG+TGG 0.568058 4_2:+69133974 None:intergenic
GACAGGTATCACATTGCAGA+GGG 0.568325 4_2:+69130799 None:intergenic
TGCCAAACTGCATGCTGCAG+AGG 0.569320 4_2:-69133007 Msa0618240:CDS
ATCTTGCTCAACGGTATAGT+CGG 0.569750 4_2:-69133952 Msa0618240:CDS
AAAAGGAATGTAGAGGATGG+TGG 0.572679 4_2:-69131263 Msa0618240:three_prime_UTR
ATCTACCCTCCCGGCACGAG+TGG 0.572718 4_2:+69136529 None:intergenic
TTCAAATCAATCAATTACAA+AGG 0.575367 4_2:+69131070 None:intergenic
CCATTCTGGGACATAACGAC+TGG 0.580436 4_2:+69132516 None:intergenic
AACAAAAGGAATGTAGAGGA+TGG 0.582996 4_2:-69131266 Msa0618240:three_prime_UTR
GACAGGAACAAAACTTTCTG+AGG 0.585432 4_2:-69135286 Msa0618240:intron
GGCGAGCATCCTCCAAAGGT+GGG 0.586656 4_2:+69133975 None:intergenic
AGAGTGGAGTAGGGTGAGTG+AGG 0.594788 4_2:-69130956 Msa0618240:three_prime_UTR
ATTCTGTGATAACAGACAAG+AGG 0.605004 4_2:+69131223 None:intergenic
AGGGCTGTAATCTGCAAGAG+TGG 0.605707 4_2:-69130972 Msa0618240:three_prime_UTR
CCAGTCGTTATGTCCCAGAA+TGG 0.605721 4_2:-69132516 Msa0618240:CDS
AGATTTCTAGGAGACAAGCA+CGG 0.607307 4_2:-69133059 Msa0618240:CDS
TTCTGGGACATAACGACTGG+AGG 0.607465 4_2:+69132519 None:intergenic
AATGCAATGGTAAAGGAGGG+TGG 0.612541 4_2:-69131434 Msa0618240:CDS
CAGTGACAACATATTAGCTA+AGG 0.621538 4_2:-69135235 Msa0618240:CDS
GAGAATGCAATGGTAAAGGA+GGG 0.624503 4_2:-69131437 Msa0618240:CDS
TCACTGTCACTGTACCGCCA+TGG 0.626505 4_2:-69137057 Msa0618240:exon
AGATGGCGAGCATCCTCCAA+AGG 0.629190 4_2:+69133971 None:intergenic
GTGGTTTCCTTCTGGCTACG+TGG 0.635363 4_2:-69131415 Msa0618240:CDS
ATGCTCGCCATCTTGCTCAA+CGG 0.635883 4_2:-69133961 Msa0618240:CDS
TGACAGGTATCACATTGCAG+AGG 0.638863 4_2:+69130798 None:intergenic
TAATCTGCAAGAGTGGAGTA+GGG 0.639250 4_2:-69130965 Msa0618240:three_prime_UTR
TCTGGGACATAACGACTGGA+GGG 0.639602 4_2:+69132520 None:intergenic
GCTGTGGGGTAACTTACATA+CGG 0.640281 4_2:-69131178 Msa0618240:three_prime_UTR
ACATATGGAGAAGCTGTACA+GGG 0.640293 4_2:-69136552 Msa0618240:CDS
ACAGGGCCACTCGTGCCGGG+AGG 0.642315 4_2:-69136535 Msa0618240:CDS
GAGAATCCCATCTAGCAACA+TGG 0.651891 4_2:-69131382 Msa0618240:CDS
AAAGAATGAACAGCACAAAG+TGG 0.659222 4_2:+69131337 None:intergenic
TGGTCAGAAGGAGAATGCAA+TGG 0.665150 4_2:-69131447 Msa0618240:CDS
AGGGTGACTTTATTGTCGTG+CGG 0.669680 4_2:-69131619 Msa0618240:CDS
AGCATCGCCATATACTGATG+CGG 0.677187 4_2:+69135212 None:intergenic
TTACACAGGTGAGCCAAACA+GGG 0.693041 4_2:-69131470 Msa0618240:intron
CTGGGACATAACGACTGGAG+GGG 0.697996 4_2:+69132521 None:intergenic
GCTGTAATAAAACAATTCAG+CGG 0.702826 4_2:-69136635 Msa0618240:CDS
AGGGTGAGTGAGGACCATGT+CGG 0.709227 4_2:-69130946 Msa0618240:three_prime_UTR
CACAGGTGAGCCAAACAGGG+TGG 0.732609 4_2:-69131467 Msa0618240:intron
TTTGATAAAGATCACAGACA+CGG 0.744802 4_2:+69130822 None:intergenic
TTTCCTAAAAGCGTCCATGG+CGG 0.761041 4_2:+69137043 None:intergenic
GTGGGGTAACTTACATACGG+TGG 0.770226 4_2:-69131175 Msa0618240:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATAATTTTAATTATTT+CGG + chr4_2:69134817-69134836 None:intergenic 0.0%
!! AAAAAATTCAAAATTGAAAA+TGG - chr4_2:69131115-69131134 Msa0618240:three_prime_UTR 10.0%
!!! AGTTTTTTTTTTTTTTTTTG+TGG - chr4_2:69133181-69133200 Msa0618240:intron 10.0%
!!! TTATAATTTTAATTATTTCG+GGG + chr4_2:69134815-69134834 None:intergenic 10.0%
!!! ATATTTTTATAATGATAATG+AGG + chr4_2:69135694-69135713 None:intergenic 10.0%
!!! ATCTTAAAAAATTGTTTTTT+TGG - chr4_2:69136222-69136241 Msa0618240:intron 10.0%
!!! GATTTCTAAAATTGATTTTT+AGG + chr4_2:69130797-69130816 None:intergenic 15.0%
!!! CTATAATTTGTAGTATTTTA+TGG + chr4_2:69133163-69133182 None:intergenic 15.0%
!!! AATATTTTACAAAGATGATA+AGG - chr4_2:69133347-69133366 Msa0618240:intron 15.0%
!!! ATTTTTAAAATACTCTGTTA+TGG - chr4_2:69133643-69133662 Msa0618240:intron 15.0%
!! AGTTATAACAAAATATGTTA+AGG - chr4_2:69133741-69133760 Msa0618240:intron 15.0%
!!! TATAATTTTAATTATTTCGG+GGG + chr4_2:69134814-69134833 None:intergenic 15.0%
!!! AGATTTTTGAAAAATCAATT+TGG + chr4_2:69135978-69135997 None:intergenic 15.0%
!!! TTTTTCAATGTTTTACTTTT+GGG - chr4_2:69136888-69136907 Msa0618240:intron 15.0%
!! ATAACAACATAACATTTGAT+TGG - chr4_2:69130918-69130937 Msa0618240:three_prime_UTR 20.0%
!! AAAAAGTAAAGTTGTGAAAT+GGG + chr4_2:69131057-69131076 None:intergenic 20.0%
!! AAAAAAGTAAAGTTGTGAAA+TGG + chr4_2:69131058-69131077 None:intergenic 20.0%
!! GAAAATCTGTTAAAATAGAA+TGG - chr4_2:69131945-69131964 Msa0618240:intron 20.0%
!! AGATGTATTTGAAAGAAATA+AGG + chr4_2:69132301-69132320 None:intergenic 20.0%
!!! TTTGATACTTGAAATTTTTC+AGG - chr4_2:69133915-69133934 Msa0618240:intron 20.0%
!!! TTGATACTTGAAATTTTTCA+GGG - chr4_2:69133916-69133935 Msa0618240:intron 20.0%
!! ATTCTATAAGCATCTATAAA+AGG - chr4_2:69134525-69134544 Msa0618240:intron 20.0%
!! TTCTATAAGCATCTATAAAA+GGG - chr4_2:69134526-69134545 Msa0618240:intron 20.0%
!!! CTAATACTTTATTTAGATCA+TGG - chr4_2:69134839-69134858 Msa0618240:intron 20.0%
!! TAACAATAACAATAAATCTC+AGG + chr4_2:69135324-69135343 None:intergenic 20.0%
!!! GAAGTCAAAACAATAATTTT+CGG + chr4_2:69135930-69135949 None:intergenic 20.0%
!!! TTTGATTTCGCTAATATTTT+GGG - chr4_2:69135950-69135969 Msa0618240:intron 20.0%
!!! GATTTTTCAAAAATCTTTCA+AGG - chr4_2:69135982-69136001 Msa0618240:intron 20.0%
!!! GTTTTTCAATGTTTTACTTT+TGG - chr4_2:69136887-69136906 Msa0618240:intron 20.0%
!! TTCAAATCAATCAATTACAA+AGG + chr4_2:69136948-69136967 None:intergenic 20.0%
! TTCTCAAATGCATTTCAAAA+TGG - chr4_2:69131162-69131181 Msa0618240:three_prime_UTR 25.0%
! TCTCAAATGCATTTCAAAAT+GGG - chr4_2:69131163-69131182 Msa0618240:three_prime_UTR 25.0%
! GTATAATTGTATTGTCTTGA+TGG - chr4_2:69131292-69131311 Msa0618240:three_prime_UTR 25.0%
! AAGTTTAAATACTTGTTTGC+AGG - chr4_2:69131358-69131377 Msa0618240:exon 25.0%
! GAAAGTCTATTCAGTATTAA+TGG - chr4_2:69131608-69131627 Msa0618240:intron 25.0%
! ATTAATATATCAGAAAAGCG+TGG - chr4_2:69131972-69131991 Msa0618240:intron 25.0%
! TCTACAGAAGAAAGAAAAAA+GGG + chr4_2:69132190-69132209 None:intergenic 25.0%
! AACCAATAAGGAAATCTAAT+GGG + chr4_2:69132241-69132260 None:intergenic 25.0%
! AATCCAGGATATCAATATAT+GGG + chr4_2:69132275-69132294 None:intergenic 25.0%
! AAATCCAGGATATCAATATA+TGG + chr4_2:69132276-69132295 None:intergenic 25.0%
! ATATATTGATATCCTGGATT+TGG - chr4_2:69132275-69132294 Msa0618240:intron 25.0%
! TAAACAGAATAGACACAAAA+AGG + chr4_2:69132497-69132516 None:intergenic 25.0%
!! CTGCTTTAACAATTTCTTTT+TGG + chr4_2:69132556-69132575 None:intergenic 25.0%
! TCTTATAAGCATATTGAAAC+AGG - chr4_2:69132596-69132615 Msa0618240:intron 25.0%
! AGTGAATAAACAAAATTGTG+TGG + chr4_2:69132675-69132694 None:intergenic 25.0%
! AACATATGAAAAGTTTACCT+GGG + chr4_2:69132878-69132897 None:intergenic 25.0%
!!! TCTAGTTGTATAAGTTTTAG+TGG - chr4_2:69132899-69132918 Msa0618240:CDS 25.0%
! TAAAATATTACTTAGTCAGC+TGG + chr4_2:69133336-69133355 None:intergenic 25.0%
!! GTCTTCTTTAACTTATTGAA+AGG + chr4_2:69133407-69133426 None:intergenic 25.0%
!! TTCGATAAGAGTGTAAAAAA+GGG + chr4_2:69133800-69133819 None:intergenic 25.0%
!!! TTTGACTTTTGATACTATAG+AGG - chr4_2:69133885-69133904 Msa0618240:intron 25.0%
! TGAGAGAAATATGAATCAAA+TGG - chr4_2:69133972-69133991 Msa0618240:CDS 25.0%
! AAACTACATCAGATTATTAC+TGG + chr4_2:69134136-69134155 None:intergenic 25.0%
! TTAACTTCATATCTCATGTA+CGG - chr4_2:69134155-69134174 Msa0618240:intron 25.0%
! TGTAATAAACAGTGAAAGTT+TGG - chr4_2:69134180-69134199 Msa0618240:intron 25.0%
! CAAATATGCTTTGTAAATAG+AGG - chr4_2:69134253-69134272 Msa0618240:intron 25.0%
! ACTATTTGTTCTGATATTCT+TGG - chr4_2:69134350-69134369 Msa0618240:intron 25.0%
! AAGCATTTAACGAGAAAAAA+AGG - chr4_2:69134398-69134417 Msa0618240:intron 25.0%
! CTTATAGAATAGTTAGATGA+GGG + chr4_2:69134515-69134534 None:intergenic 25.0%
!!! TAGATTTCATTCTAGCTTAT+TGG + chr4_2:69134598-69134617 None:intergenic 25.0%
! AAGCTAGAATGAAATCTAAA+TGG - chr4_2:69134600-69134619 Msa0618240:intron 25.0%
! AGCTAGAATGAAATCTAAAT+GGG - chr4_2:69134601-69134620 Msa0618240:intron 25.0%
! ATTACACTATTACTTGATCT+AGG + chr4_2:69134627-69134646 None:intergenic 25.0%
!! TCTTAACCTTATTTACTCAT+TGG - chr4_2:69134908-69134927 Msa0618240:intron 25.0%
!! GATCATGCTTATGATTTTAT+AGG - chr4_2:69135221-69135240 Msa0618240:CDS 25.0%
! AGTTTCAATTTCACCAAAAA+TGG + chr4_2:69135283-69135302 None:intergenic 25.0%
! AATAACAATAAATCTCAGGA+TGG + chr4_2:69135320-69135339 None:intergenic 25.0%
! TTTCTATGATTGTTAACACT+TGG - chr4_2:69135427-69135446 Msa0618240:CDS 25.0%
! ATCTTAGGTTTAGATAAATG+CGG + chr4_2:69135561-69135580 None:intergenic 25.0%
! TTTATCTAAACCTAAGATGA+TGG - chr4_2:69135563-69135582 Msa0618240:intron 25.0%
!! TTGCTATTGTTATTGTTATG+TGG - chr4_2:69135586-69135605 Msa0618240:intron 25.0%
! CTAAGCAAGTAAAAATACAA+TGG + chr4_2:69135733-69135752 None:intergenic 25.0%
!!! TTTACTTGCTTAGTTTTGTT+AGG - chr4_2:69135740-69135759 Msa0618240:intron 25.0%
!! TTATGGTTAGGTTTTACTTA+GGG - chr4_2:69135823-69135842 Msa0618240:intron 25.0%
!!! CTTTGATTTCGCTAATATTT+TGG - chr4_2:69135949-69135968 Msa0618240:intron 25.0%
!! TTTTCCTTTCAAGATATCAT+GGG - chr4_2:69136007-69136026 Msa0618240:intron 25.0%
!! GAAGTGACTTTTCAAAATTT+GGG - chr4_2:69136174-69136193 Msa0618240:intron 25.0%
!!! ATTGTTTTTTTGGAATCACT+CGG - chr4_2:69136232-69136251 Msa0618240:intron 25.0%
! CATGAAGAAATAAATTACAC+AGG + chr4_2:69136293-69136312 None:intergenic 25.0%
!!! TCCTGTTATCTATTTTTTCT+AGG - chr4_2:69136441-69136460 Msa0618240:intron 25.0%
! TTCATTATAACAGGATGAAT+CGG + chr4_2:69136470-69136489 None:intergenic 25.0%
! TTCATCCTGTTATAATGAAT+TGG - chr4_2:69136471-69136490 Msa0618240:intron 25.0%
! CAAATCCAATTCATTATAAC+AGG + chr4_2:69136479-69136498 None:intergenic 25.0%
!!! CTGTGTAACATTTAGAATTT+TGG + chr4_2:69136533-69136552 None:intergenic 25.0%
! CAAAATTCTAAATGTTACAC+AGG - chr4_2:69136531-69136550 Msa0618240:intron 25.0%
! ATTCAAAGAAGATGAACAAA+AGG - chr4_2:69136735-69136754 Msa0618240:intron 25.0%
! CTAGAGTAGAAATGTATAAT+TGG + chr4_2:69137157-69137176 None:intergenic 25.0%
!!! TTTTTTTGAGAACCCAGATT+CGG + chr4_2:69131101-69131120 None:intergenic 30.0%
GCTGTAATAAAACAATTCAG+CGG - chr4_2:69131380-69131399 Msa0618240:CDS 30.0%
!!! GAGGGTAGATATTTTTTTCT+TGG - chr4_2:69131499-69131518 Msa0618240:intron 30.0%
TTGTAGGTTGTATGTGTATT+AGG - chr4_2:69131586-69131605 Msa0618240:intron 30.0%
TTACATTTAAGTCACTTCTG+AGG + chr4_2:69131739-69131758 None:intergenic 30.0%
ATTGATTGACAAATCAAAGC+TGG + chr4_2:69131827-69131846 None:intergenic 30.0%
!! AGCTTTGATTTGTCAATCAA+TGG - chr4_2:69131826-69131845 Msa0618240:intron 30.0%
TGTGAATATGAAGAAGATCA+GGG + chr4_2:69132050-69132069 None:intergenic 30.0%
ATGTGAATATGAAGAAGATC+AGG + chr4_2:69132051-69132070 None:intergenic 30.0%
AGAAAGAAAAAAGGGAATAG+AGG + chr4_2:69132182-69132201 None:intergenic 30.0%
GTCTACAGAAGAAAGAAAAA+AGG + chr4_2:69132191-69132210 None:intergenic 30.0%
TTTCTTCTGTAGACTTTGAT+TGG - chr4_2:69132197-69132216 Msa0618240:intron 30.0%
GAACCAATAAGGAAATCTAA+TGG + chr4_2:69132242-69132261 None:intergenic 30.0%
ATCCAGGATATCAATATATG+GGG + chr4_2:69132274-69132293 None:intergenic 30.0%
AATGAGCTTAATCTTAAGTG+AGG - chr4_2:69132347-69132366 Msa0618240:intron 30.0%
GAGAGACCATATAAATTGAT+GGG - chr4_2:69132382-69132401 Msa0618240:intron 30.0%
AGAGACCATATAAATTGATG+GGG - chr4_2:69132383-69132402 Msa0618240:intron 30.0%
! CTACAAAAGTATGATTCAGA+AGG + chr4_2:69132423-69132442 None:intergenic 30.0%
! TTTCTTTTTCCTGTGATTTG+TGG - chr4_2:69132635-69132654 Msa0618240:intron 30.0%
ATCCTCATAAACAATAGTCA+TGG - chr4_2:69132704-69132723 Msa0618240:intron 30.0%
TACCATGACTATTGTTTATG+AGG + chr4_2:69132709-69132728 None:intergenic 30.0%
CAACATATGAAAAGTTTACC+TGG + chr4_2:69132879-69132898 None:intergenic 30.0%
TTCATTTATGTGAGTATGCA+TGG - chr4_2:69132965-69132984 Msa0618240:CDS 30.0%
ACATGACAATCTTGAAAACA+AGG + chr4_2:69133127-69133146 None:intergenic 30.0%
ATGCTTAAAATATGAAGCTC+TGG - chr4_2:69133375-69133394 Msa0618240:intron 30.0%
! GTTCGATAAGAGTGTAAAAA+AGG + chr4_2:69133801-69133820 None:intergenic 30.0%
ATATTTGAATCTGTGCAGAA+GGG + chr4_2:69133843-69133862 None:intergenic 30.0%
TATATTTGAATCTGTGCAGA+AGG + chr4_2:69133844-69133863 None:intergenic 30.0%
!!! ATACTTGAAATTTTTCAGGG+AGG - chr4_2:69133919-69133938 Msa0618240:intron 30.0%
ATATTCTTGGTCAAGTACAT+GGG - chr4_2:69134363-69134382 Msa0618240:intron 30.0%
!!! CAGTTGATTTTAACTTATGC+AGG + chr4_2:69134467-69134486 None:intergenic 30.0%
GCTTATAGAATAGTTAGATG+AGG + chr4_2:69134516-69134535 None:intergenic 30.0%
AAGTAATAGTGTAATGCAAC+TGG - chr4_2:69134632-69134651 Msa0618240:intron 30.0%
CATCTTGAATCTTTATTGCA+TGG - chr4_2:69134777-69134796 Msa0618240:intron 30.0%
CGAAAACCAATGAGTAAATA+AGG + chr4_2:69134917-69134936 None:intergenic 30.0%
TTCGAAATTCAATCAGAAAG+AGG - chr4_2:69134933-69134952 Msa0618240:intron 30.0%
ATCCAAAACACTTACAAGTT+TGG + chr4_2:69135189-69135208 None:intergenic 30.0%
! CATGCTTATGATTTTATAGG+TGG - chr4_2:69135224-69135243 Msa0618240:CDS 30.0%
! TTTTGGTGAAATTGAAACTG+AGG - chr4_2:69135284-69135303 Msa0618240:CDS 30.0%
AGAGAAAACAATGTACTTCT+TGG - chr4_2:69135525-69135544 Msa0618240:intron 30.0%
AACTCTCATATATCAGTTTG+AGG - chr4_2:69135792-69135811 Msa0618240:intron 30.0%
ACTCTCATATATCAGTTTGA+GGG - chr4_2:69135793-69135812 Msa0618240:intron 30.0%
! CTTATGGTTAGGTTTTACTT+AGG - chr4_2:69135822-69135841 Msa0618240:intron 30.0%
! CTTTTCCTTTCAAGATATCA+TGG - chr4_2:69136006-69136025 Msa0618240:intron 30.0%
ACAACAAGAAAGAATTCACA+TGG + chr4_2:69136035-69136054 None:intergenic 30.0%
!! AGTTCTTTGAAATCTATGAG+AGG - chr4_2:69136124-69136143 Msa0618240:intron 30.0%
!! AATTTTGAAAAGTCACTTCC+TGG + chr4_2:69136173-69136192 None:intergenic 30.0%
! GGAAGTGACTTTTCAAAATT+TGG - chr4_2:69136173-69136192 Msa0618240:intron 30.0%
TCATACTGAAATGCAAAAGA+CGG + chr4_2:69136203-69136222 None:intergenic 30.0%
TACACAGGTTATTGTTCATA+AGG + chr4_2:69136278-69136297 None:intergenic 30.0%
TTTCTTCATGAACTGATCTT+TGG - chr4_2:69136303-69136322 Msa0618240:intron 30.0%
!! AAAGGAACTTAGCTTTTCAA+AGG - chr4_2:69136376-69136395 Msa0618240:intron 30.0%
!! AAGGAACTTAGCTTTTCAAA+GGG - chr4_2:69136377-69136396 Msa0618240:intron 30.0%
GCCTAGAAAAAATAGATAAC+AGG + chr4_2:69136445-69136464 None:intergenic 30.0%
TGCAATGCAAAACCAAAAAA+GGG + chr4_2:69136713-69136732 None:intergenic 30.0%
ATGCAATGCAAAACCAAAAA+AGG + chr4_2:69136714-69136733 None:intergenic 30.0%
!!! TGTGTCTTTTTTTGTGCTTA+TGG - chr4_2:69136973-69136992 Msa0618240:intron 30.0%
TTGGTTGAATGAAGAATGAT+AGG - chr4_2:69137005-69137024 Msa0618240:CDS 30.0%
!!! ATAGGATTTTGAAGTAACTG+AGG - chr4_2:69137023-69137042 Msa0618240:CDS 30.0%
!!! TAGGATTTTGAAGTAACTGA+GGG - chr4_2:69137024-69137043 Msa0618240:CDS 30.0%
!! AAAAGAATTTTGATCCGACA+TGG + chr4_2:69137086-69137105 None:intergenic 30.0%
TTTGATAAAGATCACAGACA+CGG + chr4_2:69137196-69137215 None:intergenic 30.0%
ACAAATCATGTACATTTGAC+AGG + chr4_2:69137236-69137255 None:intergenic 30.0%
AGTAAAGTTGTGAAATGGGT+CGG + chr4_2:69131053-69131072 None:intergenic 35.0%
TCTAACTTCAAATCCGAATC+TGG - chr4_2:69131085-69131104 Msa0618240:three_prime_UTR 35.0%
CTAACTTCAAATCCGAATCT+GGG - chr4_2:69131086-69131105 Msa0618240:three_prime_UTR 35.0%
TACAGCATTCATTCACATCA+AGG + chr4_2:69131275-69131294 None:intergenic 35.0%
AATGCAGAGACATCAACATA+TGG - chr4_2:69131448-69131467 Msa0618240:CDS 35.0%
GAAAAAAATATCTACCCTCC+CGG + chr4_2:69131498-69131517 None:intergenic 35.0%
CCTACAATTATGAGCTTACA+AGG + chr4_2:69131573-69131592 None:intergenic 35.0%
CCTTGTAAGCTCATAATTGT+AGG - chr4_2:69131570-69131589 Msa0618240:intron 35.0%
GATTGTGAGTGACATTATTG+TGG - chr4_2:69131630-69131649 Msa0618240:CDS 35.0%
ATTATTGTGGCTGTCAGATT+AGG - chr4_2:69131643-69131662 Msa0618240:CDS 35.0%
CTTTGTAGTCAGATTCTCTA+CGG + chr4_2:69131921-69131940 None:intergenic 35.0%
GTGAATATGAAGAAGATCAG+GGG + chr4_2:69132049-69132068 None:intergenic 35.0%
GACAGCTATCATGAAGAAAT+TGG + chr4_2:69132104-69132123 None:intergenic 35.0%
!! TCAATATATGGGGGTATTGA+GGG + chr4_2:69132264-69132283 None:intergenic 35.0%
!! ATCAATATATGGGGGTATTG+AGG + chr4_2:69132265-69132284 None:intergenic 35.0%
TCCAGGATATCAATATATGG+GGG + chr4_2:69132273-69132292 None:intergenic 35.0%
AAAGAAATAAGGCCAAATCC+AGG + chr4_2:69132290-69132309 None:intergenic 35.0%
GGAGAGACCATATAAATTGA+TGG - chr4_2:69132381-69132400 Msa0618240:intron 35.0%
GAGACCATATAAATTGATGG+GGG - chr4_2:69132384-69132403 Msa0618240:intron 35.0%
AGACCATATAAATTGATGGG+GGG - chr4_2:69132385-69132404 Msa0618240:intron 35.0%
AAACCCCCCATCAATTTATA+TGG + chr4_2:69132391-69132410 None:intergenic 35.0%
AAACAATAGTCATGGTAGAC+AGG - chr4_2:69132712-69132731 Msa0618240:intron 35.0%
CAGTGACAACATATTAGCTA+AGG - chr4_2:69132780-69132799 Msa0618240:intron 35.0%
ACAGAGAGTGATATATAGCA+CGG + chr4_2:69133008-69133027 None:intergenic 35.0%
GAGTAAGACATCTGAAAGAA+TGG + chr4_2:69133042-69133061 None:intergenic 35.0%
! ACTTATGCTGAAGTTTCTAG+TGG - chr4_2:69133247-69133266 Msa0618240:intron 35.0%
ACATGAAATCTGGTCATTCT+GGG + chr4_2:69133293-69133312 None:intergenic 35.0%
TGTGCCAATTGTCAAACAAT+TGG - chr4_2:69133310-69133329 Msa0618240:intron 35.0%
! GACTTTTGATACTATAGAGG+AGG - chr4_2:69133888-69133907 Msa0618240:intron 35.0%
ATCAAATGGTTTCAGTTTCC+AGG - chr4_2:69133986-69134005 Msa0618240:CDS 35.0%
CCATTGATCATTTGTCTCAA+AGG + chr4_2:69134020-69134039 None:intergenic 35.0%
!! CCTTTGAGACAAATGATCAA+TGG - chr4_2:69134017-69134036 Msa0618240:intron 35.0%
ACACATGTAAGTCAAAAGCT+TGG - chr4_2:69134104-69134123 Msa0618240:intron 35.0%
TAAATAGAGGAAAAGAGACG+AGG - chr4_2:69134266-69134285 Msa0618240:intron 35.0%
!! AGGAAATACTCTGAAGTGAT+AGG - chr4_2:69134286-69134305 Msa0618240:intron 35.0%
GATATTCTTGGTCAAGTACA+TGG - chr4_2:69134362-69134381 Msa0618240:intron 35.0%
TATTCTTGGTCAAGTACATG+GGG - chr4_2:69134364-69134383 Msa0618240:intron 35.0%
ATCAGAAAGAGGAGATTTCT+AGG - chr4_2:69134944-69134963 Msa0618240:intron 35.0%
TTTACCTAGAACTGCCATAT+TGG + chr4_2:69135055-69135074 None:intergenic 35.0%
!! AGTTCTAGGTAAAGAAGCTT+CGG - chr4_2:69135062-69135081 Msa0618240:intron 35.0%
!! AGCAAAGACTGACTTTTCAA+AGG - chr4_2:69135112-69135131 Msa0618240:intron 35.0%
!!! TTTTCAAAGGCTTGTTGCTA+TGG - chr4_2:69135125-69135144 Msa0618240:intron 35.0%
! TGCCAAACTTGTAAGTGTTT+TGG - chr4_2:69135184-69135203 Msa0618240:CDS 35.0%
ACAATAGCAACCATCATCTT+AGG + chr4_2:69135576-69135595 None:intergenic 35.0%
! AGTTTGAGGGATTTGACTTA+TGG - chr4_2:69135806-69135825 Msa0618240:intron 35.0%
! TTTTGGTAAGCATAGAGACT+CGG + chr4_2:69136516-69136535 None:intergenic 35.0%
AAAGAATGAACAGCACAAAG+TGG + chr4_2:69136681-69136700 None:intergenic 35.0%
!!! TTTGCTTTGTCTCCCTTTTT+TGG - chr4_2:69136698-69136717 Msa0618240:intron 35.0%
GATGAACAAAAGGAATGTAG+AGG - chr4_2:69136745-69136764 Msa0618240:intron 35.0%
AACAAAAGGAATGTAGAGGA+TGG - chr4_2:69136749-69136768 Msa0618240:intron 35.0%
ATTCTGTGATAACAGACAAG+AGG + chr4_2:69136795-69136814 None:intergenic 35.0%
! GTGCTTATGGTAATGTCTAT+TGG - chr4_2:69136986-69137005 Msa0618240:intron 35.0%
!! TTGTTTCCTAAAAGCGTCCA+TGG + chr4_2:69130978-69130997 None:intergenic 40.0%
GCAAGTTGTCAAACAACAAC+AGG - chr4_2:69131015-69131034 Msa0618240:three_prime_UTR 40.0%
ATAAAACAATTCAGCGGCAG+CGG - chr4_2:69131386-69131405 Msa0618240:CDS 40.0%
TTATGAGAGCTCAGATGTTG+TGG - chr4_2:69131409-69131428 Msa0618240:CDS 40.0%
AACATATGGAGAAGCTGTAC+AGG - chr4_2:69131462-69131481 Msa0618240:CDS 40.0%
ACATATGGAGAAGCTGTACA+GGG - chr4_2:69131463-69131482 Msa0618240:CDS 40.0%
AGAAAGCAAACAGAGTCTAG+TGG - chr4_2:69131705-69131724 Msa0618240:intron 40.0%
AAGTGAGTTGCTCACATTAG+AGG - chr4_2:69131874-69131893 Msa0618240:intron 40.0%
ACCCAAACTTTCCGAAAAGA+CGG - chr4_2:69132016-69132035 Msa0618240:intron 40.0%
! ACCGTCTTTTCGGAAAGTTT+GGG + chr4_2:69132020-69132039 None:intergenic 40.0%
AATATGAAGAAGATCAGGGG+TGG + chr4_2:69132046-69132065 None:intergenic 40.0%
TGATAGCTGTCCATTCTGTT+AGG - chr4_2:69132113-69132132 Msa0618240:intron 40.0%
AGTGAATGGACCTAACAGAA+TGG + chr4_2:69132126-69132145 None:intergenic 40.0%
GAATAGGAATTCTGCTAGAG+AGG + chr4_2:69132150-69132169 None:intergenic 40.0%
! ATAGAGGCGTAATTGGGAAT+AGG + chr4_2:69132166-69132185 None:intergenic 40.0%
! AAGGGAATAGAGGCGTAATT+GGG + chr4_2:69132172-69132191 None:intergenic 40.0%
! AAAGGGAATAGAGGCGTAAT+TGG + chr4_2:69132173-69132192 None:intergenic 40.0%
CTTCTGTAGACTTTGATTGG+AGG - chr4_2:69132200-69132219 Msa0618240:intron 40.0%
GGCCCATTAGATTTCCTTAT+TGG - chr4_2:69132236-69132255 Msa0618240:intron 40.0%
ACCCCCATATATTGATATCC+TGG - chr4_2:69132269-69132288 Msa0618240:intron 40.0%
TTAAGTGAGGTAGTGAGAGA+GGG - chr4_2:69132360-69132379 Msa0618240:intron 40.0%
ACAAAACTGTCATCTGATGC+AGG - chr4_2:69132526-69132545 Msa0618240:CDS 40.0%
!! CTTTTTCCTGTGATTTGTGG+TGG - chr4_2:69132638-69132657 Msa0618240:intron 40.0%
GACAGGAACAAAACTTTCTG+AGG - chr4_2:69132729-69132748 Msa0618240:intron 40.0%
TGCTCGCAAACATGTAGAAA+AGG - chr4_2:69132822-69132841 Msa0618240:intron 40.0%
! AGGAGCACGAAGAATTGAAT+CGG - chr4_2:69132842-69132861 Msa0618240:intron 40.0%
CACATGAAATCTGGTCATTC+TGG + chr4_2:69133294-69133313 None:intergenic 40.0%
GACAATTGGCACATGAAATC+TGG + chr4_2:69133303-69133322 None:intergenic 40.0%
CTGGCCAATTGTTTGACAAT+TGG + chr4_2:69133317-69133336 None:intergenic 40.0%
TGTTACCTTACCTTATCACG+TGG - chr4_2:69133474-69133493 Msa0618240:intron 40.0%
! AAAAAAGGGAGCACAGTAAG+AGG + chr4_2:69133786-69133805 None:intergenic 40.0%
! TGGTTTCAGTTTCCAGGTTT+TGG - chr4_2:69133992-69134011 Msa0618240:CDS 40.0%
ATCTTGCTCAACGGTATAGT+CGG - chr4_2:69134063-69134082 Msa0618240:intron 40.0%
ACAGGTGTAATACTGATAGG+CGG + chr4_2:69134683-69134702 None:intergenic 40.0%
CACACAGGTGTAATACTGAT+AGG + chr4_2:69134686-69134705 None:intergenic 40.0%
! CTCCTTTTTCCCTCAACTTT+GGG + chr4_2:69134723-69134742 None:intergenic 40.0%
! AGATTTCTAGGAGACAAGCA+CGG - chr4_2:69134956-69134975 Msa0618240:intron 40.0%
AAAGCCAATATGGCAGTTCT+AGG - chr4_2:69135048-69135067 Msa0618240:intron 40.0%
!! TCAAGAGTTGCAGCCATTTT+TGG - chr4_2:69135267-69135286 Msa0618240:CDS 40.0%
CGATTCTTTCTTCTGTCTGT+CGG + chr4_2:69135473-69135492 None:intergenic 40.0%
CGACAGACAGAAGAAAGAAT+CGG - chr4_2:69135471-69135490 Msa0618240:intron 40.0%
! TGTTTTCTCTGAGCCATTCT+GGG + chr4_2:69135515-69135534 None:intergenic 40.0%
! TTGTTTTCTCTGAGCCATTC+TGG + chr4_2:69135516-69135535 None:intergenic 40.0%
AACAATGTACTTCTTGGCTG+AGG - chr4_2:69135531-69135550 Msa0618240:intron 40.0%
! GAGGGATTTGACTTATGGTT+AGG - chr4_2:69135811-69135830 Msa0618240:intron 40.0%
GGAACCCATGATATCTTGAA+AGG + chr4_2:69136014-69136033 None:intergenic 40.0%
TCTATGAGAGGAAGCTTCAA+AGG - chr4_2:69136136-69136155 Msa0618240:intron 40.0%
CTATGAGAGGAAGCTTCAAA+GGG - chr4_2:69136137-69136156 Msa0618240:intron 40.0%
CTTCATGAACTGATCTTTGG+TGG - chr4_2:69136306-69136325 Msa0618240:intron 40.0%
! TTTTCCGTTTCAGCATCGTA+AGG + chr4_2:69136359-69136378 None:intergenic 40.0%
TTACGATGCTGAAACGGAAA+AGG - chr4_2:69136358-69136377 Msa0618240:intron 40.0%
GAAGGAGAATGCAATGGTAA+AGG - chr4_2:69136574-69136593 Msa0618240:CDS 40.0%
GAGAATGCAATGGTAAAGGA+GGG - chr4_2:69136578-69136597 Msa0618240:CDS 40.0%
AAAAGGAATGTAGAGGATGG+TGG - chr4_2:69136752-69136771 Msa0618240:intron 40.0%
AAGAAAAATGTGTCCAGCTG+TGG - chr4_2:69136821-69136840 Msa0618240:intron 40.0%
AGAAAAATGTGTCCAGCTGT+GGG - chr4_2:69136822-69136841 Msa0618240:intron 40.0%
TAATCTGCAAGAGTGGAGTA+GGG - chr4_2:69137050-69137069 Msa0618240:exon 40.0%
ATTGGAATTTGAGCTAGTGC+AGG + chr4_2:69137139-69137158 None:intergenic 40.0%
!! TTTCCTAAAAGCGTCCATGG+CGG + chr4_2:69130975-69130994 None:intergenic 45.0%
! ACGGATTACTAGAGCGAATC+TGG + chr4_2:69131902-69131921 None:intergenic 45.0%
! CTTTTCGGAAAGTTTGGGTG+TGG + chr4_2:69132015-69132034 None:intergenic 45.0%
! GACCGTCTTTTCGGAAAGTT+TGG + chr4_2:69132021-69132040 None:intergenic 45.0%
TCTGCTAGAGAGGAAGTGAA+TGG + chr4_2:69132140-69132159 None:intergenic 45.0%
GATTGGAGGCCAAATTGTTG+CGG - chr4_2:69132214-69132233 Msa0618240:intron 45.0%
ATTGGAGGCCAAATTGTTGC+GGG - chr4_2:69132215-69132234 Msa0618240:intron 45.0%
!! GGGTATTGAGGGAACCAATA+AGG + chr4_2:69132253-69132272 None:intergenic 45.0%
CTTAAGTGAGGTAGTGAGAG+AGG - chr4_2:69132359-69132378 Msa0618240:intron 45.0%
CTAAGTCCACCACAAATCAC+AGG + chr4_2:69132647-69132666 None:intergenic 45.0%
!! TCTGAGGAGTGCTGTAGATA+TGG - chr4_2:69132745-69132764 Msa0618240:CDS 45.0%
AGCATCGCCATATACTGATG+CGG + chr4_2:69132806-69132825 None:intergenic 45.0%
!! GAATCGGCTTTTATCTTCCC+AGG - chr4_2:69132858-69132877 Msa0618240:intron 45.0%
CTAAATGCAGCCACGTGATA+AGG + chr4_2:69133487-69133506 None:intergenic 45.0%
CTTATCACGTGGCTGCATTT+AGG - chr4_2:69133485-69133504 Msa0618240:intron 45.0%
CTGTCTGCATGACATGCATT+GGG - chr4_2:69133534-69133553 Msa0618240:intron 45.0%
TGTCTGCATGACATGCATTG+GGG - chr4_2:69133535-69133554 Msa0618240:intron 45.0%
GTCTCAAAGGATCCAAAACC+TGG + chr4_2:69134007-69134026 None:intergenic 45.0%
AATGATCAATGGCCCACCTT+TGG - chr4_2:69134028-69134047 Msa0618240:intron 45.0%
GACTATACCGTTGAGCAAGA+TGG + chr4_2:69134064-69134083 None:intergenic 45.0%
AGGTGTAATACTGATAGGCG+GGG + chr4_2:69134681-69134700 None:intergenic 45.0%
CAGGTGTAATACTGATAGGC+GGG + chr4_2:69134682-69134701 None:intergenic 45.0%
GACAGCTATGTAATGCACAC+AGG + chr4_2:69134701-69134720 None:intergenic 45.0%
ACATAGCTGTCCCAAAGTTG+AGG - chr4_2:69134710-69134729 Msa0618240:intron 45.0%
CATAGCTGTCCCAAAGTTGA+GGG - chr4_2:69134711-69134730 Msa0618240:intron 45.0%
GTCCCAAAGTTGAGGGAAAA+AGG - chr4_2:69134718-69134737 Msa0618240:intron 45.0%
! CCTCCTTTTTCCCTCAACTT+TGG + chr4_2:69134724-69134743 None:intergenic 45.0%
CCAAAGTTGAGGGAAAAAGG+AGG - chr4_2:69134721-69134740 Msa0618240:intron 45.0%
! GATTTCTAGGAGACAAGCAC+GGG - chr4_2:69134957-69134976 Msa0618240:intron 45.0%
TAAAGAAGCTTCGGCTGCAT+TGG - chr4_2:69135071-69135090 Msa0618240:intron 45.0%
! ATGAACTGATCTTTGGTGGC+TGG - chr4_2:69136310-69136329 Msa0618240:intron 45.0%
GCATCCTTACGATGCTGAAA+CGG - chr4_2:69136352-69136371 Msa0618240:intron 45.0%
AGGGTGACTTTATTGTCGTG+CGG - chr4_2:69136396-69136415 Msa0618240:intron 45.0%
TGACTTTATTGTCGTGCGGA+AGG - chr4_2:69136400-69136419 Msa0618240:intron 45.0%
TTACACAGGTGAGCCAAACA+GGG - chr4_2:69136545-69136564 Msa0618240:CDS 45.0%
TGGTCAGAAGGAGAATGCAA+TGG - chr4_2:69136568-69136587 Msa0618240:CDS 45.0%
GGAGAATGCAATGGTAAAGG+AGG - chr4_2:69136577-69136596 Msa0618240:CDS 45.0%
AATGCAATGGTAAAGGAGGG+TGG - chr4_2:69136581-69136600 Msa0618240:CDS 45.0%
! CTTCTGGCTACGTGGAAAAA+CGG - chr4_2:69136608-69136627 Msa0618240:CDS 45.0%
GAGAATCCCATCTAGCAACA+TGG - chr4_2:69136633-69136652 Msa0618240:CDS 45.0%
CATGGCTGGAGAAGTTTACT+AGG - chr4_2:69136651-69136670 Msa0618240:intron 45.0%
!! GTAGAGGATGGTGGAATTGA+TGG - chr4_2:69136761-69136780 Msa0618240:intron 45.0%
GAAAAATGTGTCCAGCTGTG+GGG - chr4_2:69136823-69136842 Msa0618240:intron 45.0%
TATGTAAGTTACCCCACAGC+TGG + chr4_2:69136837-69136856 None:intergenic 45.0%
GCTGTGGGGTAACTTACATA+CGG - chr4_2:69136837-69136856 Msa0618240:intron 45.0%
GTAATCTGCAAGAGTGGAGT+AGG - chr4_2:69137049-69137068 Msa0618240:exon 45.0%
GACAGGTATCACATTGCAGA+GGG + chr4_2:69137219-69137238 None:intergenic 45.0%
TGACAGGTATCACATTGCAG+AGG + chr4_2:69137220-69137239 None:intergenic 45.0%
!!! ATTATAATTTTAATTATTTC+GGG + chr4_2:69134816-69134835 None:intergenic 5.0%
! CTAATGGGCCCGCAACAATT+TGG + chr4_2:69132226-69132245 None:intergenic 50.0%
GCTAAGGCCGCATCAGTATA+TGG - chr4_2:69132796-69132815 Msa0618240:intron 50.0%
TGCAGCCACGTGATAAGGTA+AGG + chr4_2:69133482-69133501 None:intergenic 50.0%
GCATGTCATGCAGACAGCAA+GGG + chr4_2:69133531-69133550 None:intergenic 50.0%
TGCATGTCATGCAGACAGCA+AGG + chr4_2:69133532-69133551 None:intergenic 50.0%
GCTGTCTGCATGACATGCAT+TGG - chr4_2:69133533-69133552 Msa0618240:intron 50.0%
GTCTGCATGACATGCATTGG+GGG - chr4_2:69133536-69133555 Msa0618240:intron 50.0%
TCTGCATGACATGCATTGGG+GGG - chr4_2:69133537-69133556 Msa0618240:intron 50.0%
!! GTGCAGAAGGGTGTCGAAAA+TGG + chr4_2:69133831-69133850 None:intergenic 50.0%
ATGCTCGCCATCTTGCTCAA+CGG - chr4_2:69134054-69134073 Msa0618240:intron 50.0%
! TAGGAGACAAGCACGGGTTA+GGG - chr4_2:69134963-69134982 Msa0618240:intron 50.0%
GGAATCTCAAACTGCTGAGC+AGG - chr4_2:69134984-69135003 Msa0618240:intron 50.0%
GCAGGAGCTGAAAGCCAATA+TGG - chr4_2:69135038-69135057 Msa0618240:intron 50.0%
! TCTGGGACATAACGACTGGA+GGG + chr4_2:69135498-69135517 None:intergenic 50.0%
!! TTCTGGGACATAACGACTGG+AGG + chr4_2:69135499-69135518 None:intergenic 50.0%
!! CCATTCTGGGACATAACGAC+TGG + chr4_2:69135502-69135521 None:intergenic 50.0%
CCAGTCGTTATGTCCCAGAA+TGG - chr4_2:69135499-69135518 Msa0618240:intron 50.0%
TCAAAGGGCGAGTAGTATCC+AGG - chr4_2:69136152-69136171 Msa0618240:intron 50.0%
GTTACACAGGTGAGCCAAAC+AGG - chr4_2:69136544-69136563 Msa0618240:CDS 50.0%
AAAGGAGGGTGGTTTCCTTC+TGG - chr4_2:69136592-69136611 Msa0618240:CDS 50.0%
! CGTTTTTCCACGTAGCCAGA+AGG + chr4_2:69136610-69136629 None:intergenic 50.0%
ATCCCATCTAGCAACATGGC+TGG - chr4_2:69136637-69136656 Msa0618240:CDS 50.0%
CTCCAGCCATGTTGCTAGAT+GGG + chr4_2:69136642-69136661 None:intergenic 50.0%
TCTCCAGCCATGTTGCTAGA+TGG + chr4_2:69136643-69136662 None:intergenic 50.0%
GTGGGGTAACTTACATACGG+TGG - chr4_2:69136840-69136859 Msa0618240:intron 50.0%
AGGGCTGTAATCTGCAAGAG+TGG - chr4_2:69137043-69137062 Msa0618240:exon 50.0%
TCACTGTCACTGTACCGCCA+TGG - chr4_2:69130958-69130977 Msa0618240:three_prime_UTR 55.0%
! GTACCGCCATGGACGCTTTT+AGG - chr4_2:69130969-69130988 Msa0618240:three_prime_UTR 55.0%
! GGGGTGGTAGACCGTCTTTT+CGG + chr4_2:69132030-69132049 None:intergenic 55.0%
CTGCATGACATGCATTGGGG+GGG - chr4_2:69133538-69133557 Msa0618240:intron 55.0%
TGCATGACATGCATTGGGGG+GGG - chr4_2:69133539-69133558 Msa0618240:intron 55.0%
GATCAATGGCCCACCTTTGG+AGG - chr4_2:69134031-69134050 Msa0618240:intron 55.0%
AGATGGCGAGCATCCTCCAA+AGG + chr4_2:69134047-69134066 None:intergenic 55.0%
CTAGGAGACAAGCACGGGTT+AGG - chr4_2:69134962-69134981 Msa0618240:intron 55.0%
TGCCAAACTGCATGCTGCAG+AGG - chr4_2:69135008-69135027 Msa0618240:intron 55.0%
TGCCTCTGCAGCATGCAGTT+TGG + chr4_2:69135013-69135032 None:intergenic 55.0%
TGCTGCAGAGGCAAAGATGC+AGG - chr4_2:69135020-69135039 Msa0618240:intron 55.0%
CTGGGACATAACGACTGGAG+GGG + chr4_2:69135497-69135516 None:intergenic 55.0%
! CGGTTCTGACGATGTGAGTG+AGG - chr4_2:69136252-69136271 Msa0618240:intron 55.0%
AGCCAAACAGGGTGGTCAGA+AGG - chr4_2:69136556-69136575 Msa0618240:CDS 55.0%
CTCCTTCTGACCACCCTGTT+TGG + chr4_2:69136561-69136580 None:intergenic 55.0%
! GTGGTTTCCTTCTGGCTACG+TGG - chr4_2:69136600-69136619 Msa0618240:CDS 55.0%
AGAGTGGAGTAGGGTGAGTG+AGG - chr4_2:69137059-69137078 Msa0618240:exon 55.0%
AGGGTGAGTGAGGACCATGT+CGG - chr4_2:69137069-69137088 Msa0618240:five_prime_UTR 55.0%
GCATGACATGCATTGGGGGG+GGG - chr4_2:69133540-69133559 Msa0618240:intron 60.0%
CATGACATGCATTGGGGGGG+GGG - chr4_2:69133541-69133560 Msa0618240:intron 60.0%
ATGACATGCATTGGGGGGGG+GGG - chr4_2:69133542-69133561 Msa0618240:intron 60.0%
GGCGAGCATCCTCCAAAGGT+GGG + chr4_2:69134043-69134062 None:intergenic 60.0%
TGGCGAGCATCCTCCAAAGG+TGG + chr4_2:69134044-69134063 None:intergenic 60.0%
GTGGCTGGTGCATCTCTTGC+AGG - chr4_2:69136325-69136344 Msa0618240:intron 60.0%
CACAGGTGAGCCAAACAGGG+TGG - chr4_2:69136548-69136567 Msa0618240:CDS 60.0%
CTGTACAGGGCCACTCGTGC+CGG - chr4_2:69131476-69131495 Msa0618240:intron 65.0%
TGTACAGGGCCACTCGTGCC+GGG - chr4_2:69131477-69131496 Msa0618240:intron 65.0%
ATCTACCCTCCCGGCACGAG+TGG + chr4_2:69131489-69131508 None:intergenic 65.0%
TGACATGCATTGGGGGGGGG+GGG - chr4_2:69133543-69133562 Msa0618240:intron 65.0%
GACATGCATTGGGGGGGGGG+GGG - chr4_2:69133544-69133563 Msa0618240:intron 70.0%
ACATGCATTGGGGGGGGGGG+GGG - chr4_2:69133545-69133564 Msa0618240:intron 70.0%
ACAGGGCCACTCGTGCCGGG+AGG - chr4_2:69131480-69131499 Msa0618240:intron 75.0%
CAGGGCCACTCGTGCCGGGA+GGG - chr4_2:69131481-69131500 Msa0618240:intron 75.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 69130771 69137266 69130771 ID=Msa0618240;Name=Msa0618240
chr4_2 mRNA 69130771 69137266 69130771 ID=Msa0618240-mRNA-1;Parent=Msa0618240;Name=Msa0618240-mRNA-1;_AED=0.08;_eAED=0.08;_QI=206|1|1|1|1|1|10|594|348
chr4_2 exon 69130771 69131484 69130771 ID=Msa0618240-mRNA-1:exon:19958;Parent=Msa0618240-mRNA-1
chr4_2 exon 69131616 69131690 69131616 ID=Msa0618240-mRNA-1:exon:19957;Parent=Msa0618240-mRNA-1
chr4_2 exon 69132485 69132574 69132485 ID=Msa0618240-mRNA-1:exon:19956;Parent=Msa0618240-mRNA-1
chr4_2 exon 69132732 69132794 69132732 ID=Msa0618240-mRNA-1:exon:19955;Parent=Msa0618240-mRNA-1
chr4_2 exon 69132891 69133088 69132891 ID=Msa0618240-mRNA-1:exon:19954;Parent=Msa0618240-mRNA-1
chr4_2 exon 69133928 69134029 69133928 ID=Msa0618240-mRNA-1:exon:19953;Parent=Msa0618240-mRNA-1
chr4_2 exon 69135158 69135303 69135158 ID=Msa0618240-mRNA-1:exon:19952;Parent=Msa0618240-mRNA-1
chr4_2 exon 69135420 69135489 69135420 ID=Msa0618240-mRNA-1:exon:19951;Parent=Msa0618240-mRNA-1
chr4_2 exon 69136535 69136657 69136535 ID=Msa0618240-mRNA-1:exon:19950;Parent=Msa0618240-mRNA-1
chr4_2 exon 69137001 69137266 69137001 ID=Msa0618240-mRNA-1:exon:19949;Parent=Msa0618240-mRNA-1
chr4_2 five_prime_UTR 69137061 69137266 69137061 ID=Msa0618240-mRNA-1:five_prime_utr;Parent=Msa0618240-mRNA-1
chr4_2 CDS 69137001 69137060 69137001 ID=Msa0618240-mRNA-1:cds;Parent=Msa0618240-mRNA-1
chr4_2 CDS 69136535 69136657 69136535 ID=Msa0618240-mRNA-1:cds;Parent=Msa0618240-mRNA-1
chr4_2 CDS 69135420 69135489 69135420 ID=Msa0618240-mRNA-1:cds;Parent=Msa0618240-mRNA-1
chr4_2 CDS 69135158 69135303 69135158 ID=Msa0618240-mRNA-1:cds;Parent=Msa0618240-mRNA-1
chr4_2 CDS 69133928 69134029 69133928 ID=Msa0618240-mRNA-1:cds;Parent=Msa0618240-mRNA-1
chr4_2 CDS 69132891 69133088 69132891 ID=Msa0618240-mRNA-1:cds;Parent=Msa0618240-mRNA-1
chr4_2 CDS 69132732 69132794 69132732 ID=Msa0618240-mRNA-1:cds;Parent=Msa0618240-mRNA-1
chr4_2 CDS 69132485 69132574 69132485 ID=Msa0618240-mRNA-1:cds;Parent=Msa0618240-mRNA-1
chr4_2 CDS 69131616 69131690 69131616 ID=Msa0618240-mRNA-1:cds;Parent=Msa0618240-mRNA-1
chr4_2 CDS 69131365 69131484 69131365 ID=Msa0618240-mRNA-1:cds;Parent=Msa0618240-mRNA-1
chr4_2 three_prime_UTR 69130771 69131364 69130771 ID=Msa0618240-mRNA-1:three_prime_utr;Parent=Msa0618240-mRNA-1
Gene Sequence

>Msa0618240

ATGGACGCTTTTAGGAAACAAGCTAGCAAGCTCAGAGAGCAAGTTGTCAAACAACAACAGGCTGTAATAAAACAATTCAGCGGCAGCGGTTATGAGAGCTCAGATGTTGTGGTTATTGATGAAGTTGAAATGCAGAGACATCAACATATGGAGAAGCTGTACAGGGCCACTCGTGCCGGGAGGGACTTCCAAAAAGAAATTGTTAAAGCAGCAGAAACATTTACAGCTATATCTTATAAGCATATTGAAACAGGAACAAAACTTTCTGAGGAGTGCTGTAGATATGGAGCAGAGAACAACAGTGACAACATATTAGCTAAGGCCGCATCAGTATATGGCGATGCTCGCAAACATGTAGAAAAGGAGCACGAAGAATTGAATCGGCTTTTATCTTCCCAGGTTTTGGATCCTTTGAGACAAATGATCAATGGCCCACCTTTGGAGGATGCTCGCCATCTTGCTCAACGGTATAGTCGGATGAGACAAGAAGCAGAGACACATAAAGAGGAGATTTCTAGGAGACAAGCACGGGTTAGGGAATCTCAAACTGCTGAGCAGGTTGCCAAACTGCATGCTGCAGAGGCAAAGATGCAGGAGCTGAAAGCCAATATGGCAGTTCTAGGTAAAGAAGCTTCGGCTGCATTGGCTGCTGTTGATGCACAACAGCAAAGACTGACTTTTCAAAGGCTTGTTGCTATGGTGGAATCAGAGAAGACTTTTCATTCAAGAGTTGCAGCCATTTTTGGTGAAATTGAAACTGAGATTGTCTCCGACAGACAGAAGAAAGAATCGGCCCCTCCAGTCGTTATGTCCCAGAATGGCTCAGAGAAAACAATGTACTTCTTGGCTGAGGCAATGCATCCTTACGATGCTGAAACGGAAAAGGAACTTAGCTTTTCAAAGGGTGACTTTATTGTCGTGCGGAAGGTGAGCCAAACAGGGTGGTCAGAAGGAGAATGCAATGGTAAAGGAGGGTGGTTTCCTTCTGGCTACGTGGAAAAACGGCAGAGAATCCCATCTAGCAACATGGCTGGAGAAGTTTACTAG

Protein sequence

>Msa0618240

MDAFRKQASKLREQVVKQQQAVIKQFSGSGYESSDVVVIDEVEMQRHQHMEKLYRATRAGRDFQKEIVKAAETFTAISYKHIETGTKLSEECCRYGAENNSDNILAKAASVYGDARKHVEKEHEELNRLLSSQVLDPLRQMINGPPLEDARHLAQRYSRMRQEAETHKEEISRRQARVRESQTAEQVAKLHAAEAKMQELKANMAVLGKEASAALAAVDAQQQRLTFQRLVAMVESEKTFHSRVAAIFGEIETEIVSDRQKKESAPPVVMSQNGSEKTMYFLAEAMHPYDAETEKELSFSKGDFIVVRKVSQTGWSEGECNGKGGWFPSGYVEKRQRIPSSNMAGEVY*