Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0618240 | XP_039685319.1 | 99.425 | 348 | 2 | 0 | 1 | 348 | 1 | 348 | 0.0 | 715 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0618240 | sp|Q8L7W0|SH3P3_ARATH | 71.795 | 351 | 96 | 1 | 1 | 348 | 1 | 351 | 0.0 | 544 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0000560 | Msa0618240 | 0.825250 | 5.192100e-54 | -8.615850e-47 |
Msa0618240 | Msa0702000 | 0.812199 | 4.781741e-51 | -8.615850e-47 |
Msa0618240 | Msa0738040 | 0.819008 | 1.454956e-52 | -8.615850e-47 |
Msa0618240 | Msa0869780 | 0.800860 | 1.182380e-48 | -8.615850e-47 |
Msa0618240 | Msa1037640 | 0.839112 | 1.925713e-57 | -8.615850e-47 |
Msa0618240 | Msa1072960 | 0.819406 | 1.180781e-52 | -8.615850e-47 |
Msa0618240 | Msa1113340 | 0.807464 | 4.990092e-50 | -8.615850e-47 |
Msa0618240 | Msa1130280 | 0.825226 | 5.260193e-54 | -8.615850e-47 |
Msa0618240 | Msa1160910 | 0.842859 | 1.999155e-58 | -8.615850e-47 |
Msa0136650 | Msa0618240 | 0.809984 | 1.443722e-50 | -8.615850e-47 |
Msa0164610 | Msa0618240 | 0.992834 | 9.860647e-196 | -8.615850e-47 |
Msa0380620 | Msa0618240 | 0.803051 | 4.191836e-49 | -8.615850e-47 |
Msa0430260 | Msa0618240 | 0.809988 | 1.441020e-50 | -8.615850e-47 |
Msa0434920 | Msa0618240 | 0.808709 | 2.711194e-50 | -8.615850e-47 |
Msa0264870 | Msa0618240 | 0.833521 | 5.083313e-56 | -8.615850e-47 |
Msa0307280 | Msa0618240 | 0.813112 | 3.018698e-51 | -8.615850e-47 |
Msa0318700 | Msa0618240 | 0.800989 | 1.112287e-48 | -8.615850e-47 |
Msa0340290 | Msa0618240 | 0.812762 | 3.602045e-51 | -8.615850e-47 |
Msa0500380 | Msa0618240 | 0.801823 | 7.506369e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0618240 | MtrunA17_Chr8g0380121 | 99.425 | 348 | 2 | 0 | 1 | 348 | 1 | 348 | 0.0 | 715 |
Msa0618240 | MtrunA17_Chr3g0145091 | 53.763 | 372 | 147 | 7 | 1 | 348 | 1 | 371 | 5.19e-127 | 369 |
Msa0618240 | MtrunA17_Chr4g0035851 | 51.475 | 373 | 155 | 5 | 1 | 348 | 1 | 372 | 9.15e-117 | 342 |
Msa0618240 | MtrunA17_Chr5g0408971 | 38.692 | 367 | 198 | 6 | 1 | 343 | 1 | 364 | 6.06e-91 | 276 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0618240 | AT4G18060.1 | 71.795 | 351 | 96 | 1 | 1 | 348 | 1 | 351 | 0.0 | 544 |
Msa0618240 | AT4G34660.1 | 48.387 | 372 | 164 | 6 | 1 | 348 | 1 | 368 | 2.02e-119 | 349 |
Msa0618240 | AT4G34660.2 | 45.968 | 372 | 150 | 6 | 1 | 348 | 1 | 345 | 1.10e-110 | 326 |
Msa0618240 | AT4G34660.3 | 47.578 | 351 | 147 | 5 | 1 | 348 | 1 | 317 | 2.11e-110 | 325 |
Msa0618240 | AT1G31440.1 | 42.537 | 268 | 149 | 3 | 1 | 266 | 1 | 265 | 1.58e-65 | 214 |
Msa0618240 | AT1G31440.1 | 52.000 | 75 | 32 | 1 | 269 | 343 | 361 | 431 | 1.30e-21 | 95.5 |
Msa0618240 | AT4G39020.1 | 46.479 | 71 | 37 | 1 | 272 | 341 | 93 | 163 | 4.62e-18 | 80.9 |
Find 102 sgRNAs with CRISPR-Local
Find 368 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCCTTCTGACCACCCTGTT+TGG | 0.277296 | 4_2:+69131457 | None:intergenic |
CTAGAGTAGAAATGTATAAT+TGG | 0.299207 | 4_2:+69130861 | None:intergenic |
ATCAGAAAGAGGAGATTTCT+AGG | 0.303405 | 4_2:-69133071 | Msa0618240:intron |
AAAGGAGGGTGGTTTCCTTC+TGG | 0.310065 | 4_2:-69131423 | Msa0618240:CDS |
TTTACCTAGAACTGCCATAT+TGG | 0.330252 | 4_2:+69132963 | None:intergenic |
GTGCTTATGGTAATGTCTAT+TGG | 0.330383 | 4_2:-69131029 | Msa0618240:three_prime_UTR |
AGAGAAAACAATGTACTTCT+TGG | 0.347005 | 4_2:-69132490 | Msa0618240:CDS |
GTTACACAGGTGAGCCAAAC+AGG | 0.349387 | 4_2:-69131471 | Msa0618240:intron |
TCTCCAGCCATGTTGCTAGA+TGG | 0.356206 | 4_2:+69131375 | None:intergenic |
CTAGGAGACAAGCACGGGTT+AGG | 0.357945 | 4_2:-69133053 | Msa0618240:CDS |
GTAGAGGATGGTGGAATTGA+TGG | 0.368031 | 4_2:-69131254 | Msa0618240:three_prime_UTR |
TCTGAGGAGTGCTGTAGATA+TGG | 0.376609 | 4_2:-69135270 | Msa0618240:CDS |
GCTAAGGCCGCATCAGTATA+TGG | 0.376664 | 4_2:-69135219 | Msa0618240:CDS |
AAAGCCAATATGGCAGTTCT+AGG | 0.377743 | 4_2:-69132967 | Msa0618240:CDS |
ATAACAACATAACATTTGAT+TGG | 0.387803 | 4_2:-69137097 | Msa0618240:five_prime_UTR |
TGCCTCTGCAGCATGCAGTT+TGG | 0.390750 | 4_2:+69133005 | None:intergenic |
GCAGGAGCTGAAAGCCAATA+TGG | 0.397351 | 4_2:-69132977 | Msa0618240:CDS |
CGATTCTTTCTTCTGTCTGT+CGG | 0.410684 | 4_2:+69132545 | None:intergenic |
CATGGCTGGAGAAGTTTACT+AGG | 0.414641 | 4_2:-69131364 | Msa0618240:exon |
GCAAGTTGTCAAACAACAAC+AGG | 0.420146 | 4_2:-69137000 | Msa0618240:intron |
TGCTGCAGAGGCAAAGATGC+AGG | 0.422100 | 4_2:-69132995 | Msa0618240:CDS |
CTCCAGCCATGTTGCTAGAT+GGG | 0.428147 | 4_2:+69131376 | None:intergenic |
TCTTATAAGCATATTGAAAC+AGG | 0.429719 | 4_2:-69135419 | Msa0618240:intron |
AATGATCAATGGCCCACCTT+TGG | 0.437837 | 4_2:-69133987 | Msa0618240:CDS |
TTGGTTGAATGAAGAATGAT+AGG | 0.443623 | 4_2:-69131010 | Msa0618240:three_prime_UTR |
AACATATGGAGAAGCTGTAC+AGG | 0.447502 | 4_2:-69136553 | Msa0618240:CDS |
CTGTACAGGGCCACTCGTGC+CGG | 0.450031 | 4_2:-69136539 | Msa0618240:CDS |
GATCAATGGCCCACCTTTGG+AGG | 0.457825 | 4_2:-69133984 | Msa0618240:CDS |
TAGGAGACAAGCACGGGTTA+GGG | 0.473006 | 4_2:-69133052 | Msa0618240:CDS |
ATTCAAAGAAGATGAACAAA+AGG | 0.473270 | 4_2:-69131280 | Msa0618240:three_prime_UTR |
GTAATCTGCAAGAGTGGAGT+AGG | 0.484711 | 4_2:-69130966 | Msa0618240:three_prime_UTR |
TGCTCGCAAACATGTAGAAA+AGG | 0.487145 | 4_2:-69135193 | Msa0618240:CDS |
TAAAGAAGCTTCGGCTGCAT+TGG | 0.487250 | 4_2:-69132944 | Msa0618240:CDS |
AGTTCTAGGTAAAGAAGCTT+CGG | 0.491125 | 4_2:-69132953 | Msa0618240:CDS |
TGTACAGGGCCACTCGTGCC+GGG | 0.491956 | 4_2:-69136538 | Msa0618240:CDS |
ACAAATCATGTACATTTGAC+AGG | 0.500089 | 4_2:+69130782 | None:intergenic |
GGAATCTCAAACTGCTGAGC+AGG | 0.503789 | 4_2:-69133031 | Msa0618240:CDS |
TTACGATGCTGAAACGGAAA+AGG | 0.507521 | 4_2:-69131657 | Msa0618240:CDS |
GCATCCTTACGATGCTGAAA+CGG | 0.514169 | 4_2:-69131663 | Msa0618240:CDS |
CCATTGATCATTTGTCTCAA+AGG | 0.516154 | 4_2:+69133998 | None:intergenic |
GGAGAATGCAATGGTAAAGG+AGG | 0.517024 | 4_2:-69131438 | Msa0618240:CDS |
ATCCCATCTAGCAACATGGC+TGG | 0.518734 | 4_2:-69131378 | Msa0618240:CDS |
AGGAGCACGAAGAATTGAAT+CGG | 0.522277 | 4_2:-69135173 | Msa0618240:CDS |
AATGCAGAGACATCAACATA+TGG | 0.529225 | 4_2:-69136567 | Msa0618240:CDS |
CCTTTGAGACAAATGATCAA+TGG | 0.536520 | 4_2:-69133998 | Msa0618240:CDS |
ATTGGAATTTGAGCTAGTGC+AGG | 0.543842 | 4_2:+69130879 | None:intergenic |
AGCCAAACAGGGTGGTCAGA+AGG | 0.549155 | 4_2:-69131459 | Msa0618240:CDS |
CGACAGACAGAAGAAAGAAT+CGG | 0.549964 | 4_2:-69132544 | Msa0618240:CDS |
CAGGGCCACTCGTGCCGGGA+GGG | 0.550379 | 4_2:-69136534 | Msa0618240:intron |
GATTTCTAGGAGACAAGCAC+GGG | 0.551675 | 4_2:-69133058 | Msa0618240:CDS |
GATGAACAAAAGGAATGTAG+AGG | 0.553167 | 4_2:-69131270 | Msa0618240:three_prime_UTR |
TGACTTTATTGTCGTGCGGA+AGG | 0.554090 | 4_2:-69131615 | Msa0618240:intron |
TTGTTTCCTAAAAGCGTCCA+TGG | 0.555831 | 4_2:+69137040 | None:intergenic |
GAAGGAGAATGCAATGGTAA+AGG | 0.558279 | 4_2:-69131441 | Msa0618240:CDS |
GACTATACCGTTGAGCAAGA+TGG | 0.558931 | 4_2:+69133954 | None:intergenic |
ATAAAACAATTCAGCGGCAG+CGG | 0.560251 | 4_2:-69136629 | Msa0618240:CDS |
AACAATGTACTTCTTGGCTG+AGG | 0.565631 | 4_2:-69132484 | Msa0618240:intron |
TTATGAGAGCTCAGATGTTG+TGG | 0.566218 | 4_2:-69136606 | Msa0618240:CDS |
TATGTAAGTTACCCCACAGC+TGG | 0.566545 | 4_2:+69131181 | None:intergenic |
TGGCGAGCATCCTCCAAAGG+TGG | 0.568058 | 4_2:+69133974 | None:intergenic |
GACAGGTATCACATTGCAGA+GGG | 0.568325 | 4_2:+69130799 | None:intergenic |
TGCCAAACTGCATGCTGCAG+AGG | 0.569320 | 4_2:-69133007 | Msa0618240:CDS |
ATCTTGCTCAACGGTATAGT+CGG | 0.569750 | 4_2:-69133952 | Msa0618240:CDS |
AAAAGGAATGTAGAGGATGG+TGG | 0.572679 | 4_2:-69131263 | Msa0618240:three_prime_UTR |
ATCTACCCTCCCGGCACGAG+TGG | 0.572718 | 4_2:+69136529 | None:intergenic |
TTCAAATCAATCAATTACAA+AGG | 0.575367 | 4_2:+69131070 | None:intergenic |
CCATTCTGGGACATAACGAC+TGG | 0.580436 | 4_2:+69132516 | None:intergenic |
AACAAAAGGAATGTAGAGGA+TGG | 0.582996 | 4_2:-69131266 | Msa0618240:three_prime_UTR |
GACAGGAACAAAACTTTCTG+AGG | 0.585432 | 4_2:-69135286 | Msa0618240:intron |
GGCGAGCATCCTCCAAAGGT+GGG | 0.586656 | 4_2:+69133975 | None:intergenic |
AGAGTGGAGTAGGGTGAGTG+AGG | 0.594788 | 4_2:-69130956 | Msa0618240:three_prime_UTR |
ATTCTGTGATAACAGACAAG+AGG | 0.605004 | 4_2:+69131223 | None:intergenic |
AGGGCTGTAATCTGCAAGAG+TGG | 0.605707 | 4_2:-69130972 | Msa0618240:three_prime_UTR |
CCAGTCGTTATGTCCCAGAA+TGG | 0.605721 | 4_2:-69132516 | Msa0618240:CDS |
AGATTTCTAGGAGACAAGCA+CGG | 0.607307 | 4_2:-69133059 | Msa0618240:CDS |
TTCTGGGACATAACGACTGG+AGG | 0.607465 | 4_2:+69132519 | None:intergenic |
AATGCAATGGTAAAGGAGGG+TGG | 0.612541 | 4_2:-69131434 | Msa0618240:CDS |
CAGTGACAACATATTAGCTA+AGG | 0.621538 | 4_2:-69135235 | Msa0618240:CDS |
GAGAATGCAATGGTAAAGGA+GGG | 0.624503 | 4_2:-69131437 | Msa0618240:CDS |
TCACTGTCACTGTACCGCCA+TGG | 0.626505 | 4_2:-69137057 | Msa0618240:exon |
AGATGGCGAGCATCCTCCAA+AGG | 0.629190 | 4_2:+69133971 | None:intergenic |
GTGGTTTCCTTCTGGCTACG+TGG | 0.635363 | 4_2:-69131415 | Msa0618240:CDS |
ATGCTCGCCATCTTGCTCAA+CGG | 0.635883 | 4_2:-69133961 | Msa0618240:CDS |
TGACAGGTATCACATTGCAG+AGG | 0.638863 | 4_2:+69130798 | None:intergenic |
TAATCTGCAAGAGTGGAGTA+GGG | 0.639250 | 4_2:-69130965 | Msa0618240:three_prime_UTR |
TCTGGGACATAACGACTGGA+GGG | 0.639602 | 4_2:+69132520 | None:intergenic |
GCTGTGGGGTAACTTACATA+CGG | 0.640281 | 4_2:-69131178 | Msa0618240:three_prime_UTR |
ACATATGGAGAAGCTGTACA+GGG | 0.640293 | 4_2:-69136552 | Msa0618240:CDS |
ACAGGGCCACTCGTGCCGGG+AGG | 0.642315 | 4_2:-69136535 | Msa0618240:CDS |
GAGAATCCCATCTAGCAACA+TGG | 0.651891 | 4_2:-69131382 | Msa0618240:CDS |
AAAGAATGAACAGCACAAAG+TGG | 0.659222 | 4_2:+69131337 | None:intergenic |
TGGTCAGAAGGAGAATGCAA+TGG | 0.665150 | 4_2:-69131447 | Msa0618240:CDS |
AGGGTGACTTTATTGTCGTG+CGG | 0.669680 | 4_2:-69131619 | Msa0618240:CDS |
AGCATCGCCATATACTGATG+CGG | 0.677187 | 4_2:+69135212 | None:intergenic |
TTACACAGGTGAGCCAAACA+GGG | 0.693041 | 4_2:-69131470 | Msa0618240:intron |
CTGGGACATAACGACTGGAG+GGG | 0.697996 | 4_2:+69132521 | None:intergenic |
GCTGTAATAAAACAATTCAG+CGG | 0.702826 | 4_2:-69136635 | Msa0618240:CDS |
AGGGTGAGTGAGGACCATGT+CGG | 0.709227 | 4_2:-69130946 | Msa0618240:three_prime_UTR |
CACAGGTGAGCCAAACAGGG+TGG | 0.732609 | 4_2:-69131467 | Msa0618240:intron |
TTTGATAAAGATCACAGACA+CGG | 0.744802 | 4_2:+69130822 | None:intergenic |
TTTCCTAAAAGCGTCCATGG+CGG | 0.761041 | 4_2:+69137043 | None:intergenic |
GTGGGGTAACTTACATACGG+TGG | 0.770226 | 4_2:-69131175 | Msa0618240:three_prime_UTR |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATTATAATTTTAATTATTT+CGG | + | chr4_2:69134817-69134836 | None:intergenic | 0.0% |
!! | AAAAAATTCAAAATTGAAAA+TGG | - | chr4_2:69131115-69131134 | Msa0618240:three_prime_UTR | 10.0% |
!!! | AGTTTTTTTTTTTTTTTTTG+TGG | - | chr4_2:69133181-69133200 | Msa0618240:intron | 10.0% |
!!! | TTATAATTTTAATTATTTCG+GGG | + | chr4_2:69134815-69134834 | None:intergenic | 10.0% |
!!! | ATATTTTTATAATGATAATG+AGG | + | chr4_2:69135694-69135713 | None:intergenic | 10.0% |
!!! | ATCTTAAAAAATTGTTTTTT+TGG | - | chr4_2:69136222-69136241 | Msa0618240:intron | 10.0% |
!!! | GATTTCTAAAATTGATTTTT+AGG | + | chr4_2:69130797-69130816 | None:intergenic | 15.0% |
!!! | CTATAATTTGTAGTATTTTA+TGG | + | chr4_2:69133163-69133182 | None:intergenic | 15.0% |
!!! | AATATTTTACAAAGATGATA+AGG | - | chr4_2:69133347-69133366 | Msa0618240:intron | 15.0% |
!!! | ATTTTTAAAATACTCTGTTA+TGG | - | chr4_2:69133643-69133662 | Msa0618240:intron | 15.0% |
!! | AGTTATAACAAAATATGTTA+AGG | - | chr4_2:69133741-69133760 | Msa0618240:intron | 15.0% |
!!! | TATAATTTTAATTATTTCGG+GGG | + | chr4_2:69134814-69134833 | None:intergenic | 15.0% |
!!! | AGATTTTTGAAAAATCAATT+TGG | + | chr4_2:69135978-69135997 | None:intergenic | 15.0% |
!!! | TTTTTCAATGTTTTACTTTT+GGG | - | chr4_2:69136888-69136907 | Msa0618240:intron | 15.0% |
!! | ATAACAACATAACATTTGAT+TGG | - | chr4_2:69130918-69130937 | Msa0618240:three_prime_UTR | 20.0% |
!! | AAAAAGTAAAGTTGTGAAAT+GGG | + | chr4_2:69131057-69131076 | None:intergenic | 20.0% |
!! | AAAAAAGTAAAGTTGTGAAA+TGG | + | chr4_2:69131058-69131077 | None:intergenic | 20.0% |
!! | GAAAATCTGTTAAAATAGAA+TGG | - | chr4_2:69131945-69131964 | Msa0618240:intron | 20.0% |
!! | AGATGTATTTGAAAGAAATA+AGG | + | chr4_2:69132301-69132320 | None:intergenic | 20.0% |
!!! | TTTGATACTTGAAATTTTTC+AGG | - | chr4_2:69133915-69133934 | Msa0618240:intron | 20.0% |
!!! | TTGATACTTGAAATTTTTCA+GGG | - | chr4_2:69133916-69133935 | Msa0618240:intron | 20.0% |
!! | ATTCTATAAGCATCTATAAA+AGG | - | chr4_2:69134525-69134544 | Msa0618240:intron | 20.0% |
!! | TTCTATAAGCATCTATAAAA+GGG | - | chr4_2:69134526-69134545 | Msa0618240:intron | 20.0% |
!!! | CTAATACTTTATTTAGATCA+TGG | - | chr4_2:69134839-69134858 | Msa0618240:intron | 20.0% |
!! | TAACAATAACAATAAATCTC+AGG | + | chr4_2:69135324-69135343 | None:intergenic | 20.0% |
!!! | GAAGTCAAAACAATAATTTT+CGG | + | chr4_2:69135930-69135949 | None:intergenic | 20.0% |
!!! | TTTGATTTCGCTAATATTTT+GGG | - | chr4_2:69135950-69135969 | Msa0618240:intron | 20.0% |
!!! | GATTTTTCAAAAATCTTTCA+AGG | - | chr4_2:69135982-69136001 | Msa0618240:intron | 20.0% |
!!! | GTTTTTCAATGTTTTACTTT+TGG | - | chr4_2:69136887-69136906 | Msa0618240:intron | 20.0% |
!! | TTCAAATCAATCAATTACAA+AGG | + | chr4_2:69136948-69136967 | None:intergenic | 20.0% |
! | TTCTCAAATGCATTTCAAAA+TGG | - | chr4_2:69131162-69131181 | Msa0618240:three_prime_UTR | 25.0% |
! | TCTCAAATGCATTTCAAAAT+GGG | - | chr4_2:69131163-69131182 | Msa0618240:three_prime_UTR | 25.0% |
! | GTATAATTGTATTGTCTTGA+TGG | - | chr4_2:69131292-69131311 | Msa0618240:three_prime_UTR | 25.0% |
! | AAGTTTAAATACTTGTTTGC+AGG | - | chr4_2:69131358-69131377 | Msa0618240:exon | 25.0% |
! | GAAAGTCTATTCAGTATTAA+TGG | - | chr4_2:69131608-69131627 | Msa0618240:intron | 25.0% |
! | ATTAATATATCAGAAAAGCG+TGG | - | chr4_2:69131972-69131991 | Msa0618240:intron | 25.0% |
! | TCTACAGAAGAAAGAAAAAA+GGG | + | chr4_2:69132190-69132209 | None:intergenic | 25.0% |
! | AACCAATAAGGAAATCTAAT+GGG | + | chr4_2:69132241-69132260 | None:intergenic | 25.0% |
! | AATCCAGGATATCAATATAT+GGG | + | chr4_2:69132275-69132294 | None:intergenic | 25.0% |
! | AAATCCAGGATATCAATATA+TGG | + | chr4_2:69132276-69132295 | None:intergenic | 25.0% |
! | ATATATTGATATCCTGGATT+TGG | - | chr4_2:69132275-69132294 | Msa0618240:intron | 25.0% |
! | TAAACAGAATAGACACAAAA+AGG | + | chr4_2:69132497-69132516 | None:intergenic | 25.0% |
!! | CTGCTTTAACAATTTCTTTT+TGG | + | chr4_2:69132556-69132575 | None:intergenic | 25.0% |
! | TCTTATAAGCATATTGAAAC+AGG | - | chr4_2:69132596-69132615 | Msa0618240:intron | 25.0% |
! | AGTGAATAAACAAAATTGTG+TGG | + | chr4_2:69132675-69132694 | None:intergenic | 25.0% |
! | AACATATGAAAAGTTTACCT+GGG | + | chr4_2:69132878-69132897 | None:intergenic | 25.0% |
!!! | TCTAGTTGTATAAGTTTTAG+TGG | - | chr4_2:69132899-69132918 | Msa0618240:CDS | 25.0% |
! | TAAAATATTACTTAGTCAGC+TGG | + | chr4_2:69133336-69133355 | None:intergenic | 25.0% |
!! | GTCTTCTTTAACTTATTGAA+AGG | + | chr4_2:69133407-69133426 | None:intergenic | 25.0% |
!! | TTCGATAAGAGTGTAAAAAA+GGG | + | chr4_2:69133800-69133819 | None:intergenic | 25.0% |
!!! | TTTGACTTTTGATACTATAG+AGG | - | chr4_2:69133885-69133904 | Msa0618240:intron | 25.0% |
! | TGAGAGAAATATGAATCAAA+TGG | - | chr4_2:69133972-69133991 | Msa0618240:CDS | 25.0% |
! | AAACTACATCAGATTATTAC+TGG | + | chr4_2:69134136-69134155 | None:intergenic | 25.0% |
! | TTAACTTCATATCTCATGTA+CGG | - | chr4_2:69134155-69134174 | Msa0618240:intron | 25.0% |
! | TGTAATAAACAGTGAAAGTT+TGG | - | chr4_2:69134180-69134199 | Msa0618240:intron | 25.0% |
! | CAAATATGCTTTGTAAATAG+AGG | - | chr4_2:69134253-69134272 | Msa0618240:intron | 25.0% |
! | ACTATTTGTTCTGATATTCT+TGG | - | chr4_2:69134350-69134369 | Msa0618240:intron | 25.0% |
! | AAGCATTTAACGAGAAAAAA+AGG | - | chr4_2:69134398-69134417 | Msa0618240:intron | 25.0% |
! | CTTATAGAATAGTTAGATGA+GGG | + | chr4_2:69134515-69134534 | None:intergenic | 25.0% |
!!! | TAGATTTCATTCTAGCTTAT+TGG | + | chr4_2:69134598-69134617 | None:intergenic | 25.0% |
! | AAGCTAGAATGAAATCTAAA+TGG | - | chr4_2:69134600-69134619 | Msa0618240:intron | 25.0% |
! | AGCTAGAATGAAATCTAAAT+GGG | - | chr4_2:69134601-69134620 | Msa0618240:intron | 25.0% |
! | ATTACACTATTACTTGATCT+AGG | + | chr4_2:69134627-69134646 | None:intergenic | 25.0% |
!! | TCTTAACCTTATTTACTCAT+TGG | - | chr4_2:69134908-69134927 | Msa0618240:intron | 25.0% |
!! | GATCATGCTTATGATTTTAT+AGG | - | chr4_2:69135221-69135240 | Msa0618240:CDS | 25.0% |
! | AGTTTCAATTTCACCAAAAA+TGG | + | chr4_2:69135283-69135302 | None:intergenic | 25.0% |
! | AATAACAATAAATCTCAGGA+TGG | + | chr4_2:69135320-69135339 | None:intergenic | 25.0% |
! | TTTCTATGATTGTTAACACT+TGG | - | chr4_2:69135427-69135446 | Msa0618240:CDS | 25.0% |
! | ATCTTAGGTTTAGATAAATG+CGG | + | chr4_2:69135561-69135580 | None:intergenic | 25.0% |
! | TTTATCTAAACCTAAGATGA+TGG | - | chr4_2:69135563-69135582 | Msa0618240:intron | 25.0% |
!! | TTGCTATTGTTATTGTTATG+TGG | - | chr4_2:69135586-69135605 | Msa0618240:intron | 25.0% |
! | CTAAGCAAGTAAAAATACAA+TGG | + | chr4_2:69135733-69135752 | None:intergenic | 25.0% |
!!! | TTTACTTGCTTAGTTTTGTT+AGG | - | chr4_2:69135740-69135759 | Msa0618240:intron | 25.0% |
!! | TTATGGTTAGGTTTTACTTA+GGG | - | chr4_2:69135823-69135842 | Msa0618240:intron | 25.0% |
!!! | CTTTGATTTCGCTAATATTT+TGG | - | chr4_2:69135949-69135968 | Msa0618240:intron | 25.0% |
!! | TTTTCCTTTCAAGATATCAT+GGG | - | chr4_2:69136007-69136026 | Msa0618240:intron | 25.0% |
!! | GAAGTGACTTTTCAAAATTT+GGG | - | chr4_2:69136174-69136193 | Msa0618240:intron | 25.0% |
!!! | ATTGTTTTTTTGGAATCACT+CGG | - | chr4_2:69136232-69136251 | Msa0618240:intron | 25.0% |
! | CATGAAGAAATAAATTACAC+AGG | + | chr4_2:69136293-69136312 | None:intergenic | 25.0% |
!!! | TCCTGTTATCTATTTTTTCT+AGG | - | chr4_2:69136441-69136460 | Msa0618240:intron | 25.0% |
! | TTCATTATAACAGGATGAAT+CGG | + | chr4_2:69136470-69136489 | None:intergenic | 25.0% |
! | TTCATCCTGTTATAATGAAT+TGG | - | chr4_2:69136471-69136490 | Msa0618240:intron | 25.0% |
! | CAAATCCAATTCATTATAAC+AGG | + | chr4_2:69136479-69136498 | None:intergenic | 25.0% |
!!! | CTGTGTAACATTTAGAATTT+TGG | + | chr4_2:69136533-69136552 | None:intergenic | 25.0% |
! | CAAAATTCTAAATGTTACAC+AGG | - | chr4_2:69136531-69136550 | Msa0618240:intron | 25.0% |
! | ATTCAAAGAAGATGAACAAA+AGG | - | chr4_2:69136735-69136754 | Msa0618240:intron | 25.0% |
! | CTAGAGTAGAAATGTATAAT+TGG | + | chr4_2:69137157-69137176 | None:intergenic | 25.0% |
!!! | TTTTTTTGAGAACCCAGATT+CGG | + | chr4_2:69131101-69131120 | None:intergenic | 30.0% |
GCTGTAATAAAACAATTCAG+CGG | - | chr4_2:69131380-69131399 | Msa0618240:CDS | 30.0% | |
!!! | GAGGGTAGATATTTTTTTCT+TGG | - | chr4_2:69131499-69131518 | Msa0618240:intron | 30.0% |
TTGTAGGTTGTATGTGTATT+AGG | - | chr4_2:69131586-69131605 | Msa0618240:intron | 30.0% | |
TTACATTTAAGTCACTTCTG+AGG | + | chr4_2:69131739-69131758 | None:intergenic | 30.0% | |
ATTGATTGACAAATCAAAGC+TGG | + | chr4_2:69131827-69131846 | None:intergenic | 30.0% | |
!! | AGCTTTGATTTGTCAATCAA+TGG | - | chr4_2:69131826-69131845 | Msa0618240:intron | 30.0% |
TGTGAATATGAAGAAGATCA+GGG | + | chr4_2:69132050-69132069 | None:intergenic | 30.0% | |
ATGTGAATATGAAGAAGATC+AGG | + | chr4_2:69132051-69132070 | None:intergenic | 30.0% | |
AGAAAGAAAAAAGGGAATAG+AGG | + | chr4_2:69132182-69132201 | None:intergenic | 30.0% | |
GTCTACAGAAGAAAGAAAAA+AGG | + | chr4_2:69132191-69132210 | None:intergenic | 30.0% | |
TTTCTTCTGTAGACTTTGAT+TGG | - | chr4_2:69132197-69132216 | Msa0618240:intron | 30.0% | |
GAACCAATAAGGAAATCTAA+TGG | + | chr4_2:69132242-69132261 | None:intergenic | 30.0% | |
ATCCAGGATATCAATATATG+GGG | + | chr4_2:69132274-69132293 | None:intergenic | 30.0% | |
AATGAGCTTAATCTTAAGTG+AGG | - | chr4_2:69132347-69132366 | Msa0618240:intron | 30.0% | |
GAGAGACCATATAAATTGAT+GGG | - | chr4_2:69132382-69132401 | Msa0618240:intron | 30.0% | |
AGAGACCATATAAATTGATG+GGG | - | chr4_2:69132383-69132402 | Msa0618240:intron | 30.0% | |
! | CTACAAAAGTATGATTCAGA+AGG | + | chr4_2:69132423-69132442 | None:intergenic | 30.0% |
! | TTTCTTTTTCCTGTGATTTG+TGG | - | chr4_2:69132635-69132654 | Msa0618240:intron | 30.0% |
ATCCTCATAAACAATAGTCA+TGG | - | chr4_2:69132704-69132723 | Msa0618240:intron | 30.0% | |
TACCATGACTATTGTTTATG+AGG | + | chr4_2:69132709-69132728 | None:intergenic | 30.0% | |
CAACATATGAAAAGTTTACC+TGG | + | chr4_2:69132879-69132898 | None:intergenic | 30.0% | |
TTCATTTATGTGAGTATGCA+TGG | - | chr4_2:69132965-69132984 | Msa0618240:CDS | 30.0% | |
ACATGACAATCTTGAAAACA+AGG | + | chr4_2:69133127-69133146 | None:intergenic | 30.0% | |
ATGCTTAAAATATGAAGCTC+TGG | - | chr4_2:69133375-69133394 | Msa0618240:intron | 30.0% | |
! | GTTCGATAAGAGTGTAAAAA+AGG | + | chr4_2:69133801-69133820 | None:intergenic | 30.0% |
ATATTTGAATCTGTGCAGAA+GGG | + | chr4_2:69133843-69133862 | None:intergenic | 30.0% | |
TATATTTGAATCTGTGCAGA+AGG | + | chr4_2:69133844-69133863 | None:intergenic | 30.0% | |
!!! | ATACTTGAAATTTTTCAGGG+AGG | - | chr4_2:69133919-69133938 | Msa0618240:intron | 30.0% |
ATATTCTTGGTCAAGTACAT+GGG | - | chr4_2:69134363-69134382 | Msa0618240:intron | 30.0% | |
!!! | CAGTTGATTTTAACTTATGC+AGG | + | chr4_2:69134467-69134486 | None:intergenic | 30.0% |
GCTTATAGAATAGTTAGATG+AGG | + | chr4_2:69134516-69134535 | None:intergenic | 30.0% | |
AAGTAATAGTGTAATGCAAC+TGG | - | chr4_2:69134632-69134651 | Msa0618240:intron | 30.0% | |
CATCTTGAATCTTTATTGCA+TGG | - | chr4_2:69134777-69134796 | Msa0618240:intron | 30.0% | |
CGAAAACCAATGAGTAAATA+AGG | + | chr4_2:69134917-69134936 | None:intergenic | 30.0% | |
TTCGAAATTCAATCAGAAAG+AGG | - | chr4_2:69134933-69134952 | Msa0618240:intron | 30.0% | |
ATCCAAAACACTTACAAGTT+TGG | + | chr4_2:69135189-69135208 | None:intergenic | 30.0% | |
! | CATGCTTATGATTTTATAGG+TGG | - | chr4_2:69135224-69135243 | Msa0618240:CDS | 30.0% |
! | TTTTGGTGAAATTGAAACTG+AGG | - | chr4_2:69135284-69135303 | Msa0618240:CDS | 30.0% |
AGAGAAAACAATGTACTTCT+TGG | - | chr4_2:69135525-69135544 | Msa0618240:intron | 30.0% | |
AACTCTCATATATCAGTTTG+AGG | - | chr4_2:69135792-69135811 | Msa0618240:intron | 30.0% | |
ACTCTCATATATCAGTTTGA+GGG | - | chr4_2:69135793-69135812 | Msa0618240:intron | 30.0% | |
! | CTTATGGTTAGGTTTTACTT+AGG | - | chr4_2:69135822-69135841 | Msa0618240:intron | 30.0% |
! | CTTTTCCTTTCAAGATATCA+TGG | - | chr4_2:69136006-69136025 | Msa0618240:intron | 30.0% |
ACAACAAGAAAGAATTCACA+TGG | + | chr4_2:69136035-69136054 | None:intergenic | 30.0% | |
!! | AGTTCTTTGAAATCTATGAG+AGG | - | chr4_2:69136124-69136143 | Msa0618240:intron | 30.0% |
!! | AATTTTGAAAAGTCACTTCC+TGG | + | chr4_2:69136173-69136192 | None:intergenic | 30.0% |
! | GGAAGTGACTTTTCAAAATT+TGG | - | chr4_2:69136173-69136192 | Msa0618240:intron | 30.0% |
TCATACTGAAATGCAAAAGA+CGG | + | chr4_2:69136203-69136222 | None:intergenic | 30.0% | |
TACACAGGTTATTGTTCATA+AGG | + | chr4_2:69136278-69136297 | None:intergenic | 30.0% | |
TTTCTTCATGAACTGATCTT+TGG | - | chr4_2:69136303-69136322 | Msa0618240:intron | 30.0% | |
!! | AAAGGAACTTAGCTTTTCAA+AGG | - | chr4_2:69136376-69136395 | Msa0618240:intron | 30.0% |
!! | AAGGAACTTAGCTTTTCAAA+GGG | - | chr4_2:69136377-69136396 | Msa0618240:intron | 30.0% |
GCCTAGAAAAAATAGATAAC+AGG | + | chr4_2:69136445-69136464 | None:intergenic | 30.0% | |
TGCAATGCAAAACCAAAAAA+GGG | + | chr4_2:69136713-69136732 | None:intergenic | 30.0% | |
ATGCAATGCAAAACCAAAAA+AGG | + | chr4_2:69136714-69136733 | None:intergenic | 30.0% | |
!!! | TGTGTCTTTTTTTGTGCTTA+TGG | - | chr4_2:69136973-69136992 | Msa0618240:intron | 30.0% |
TTGGTTGAATGAAGAATGAT+AGG | - | chr4_2:69137005-69137024 | Msa0618240:CDS | 30.0% | |
!!! | ATAGGATTTTGAAGTAACTG+AGG | - | chr4_2:69137023-69137042 | Msa0618240:CDS | 30.0% |
!!! | TAGGATTTTGAAGTAACTGA+GGG | - | chr4_2:69137024-69137043 | Msa0618240:CDS | 30.0% |
!! | AAAAGAATTTTGATCCGACA+TGG | + | chr4_2:69137086-69137105 | None:intergenic | 30.0% |
TTTGATAAAGATCACAGACA+CGG | + | chr4_2:69137196-69137215 | None:intergenic | 30.0% | |
ACAAATCATGTACATTTGAC+AGG | + | chr4_2:69137236-69137255 | None:intergenic | 30.0% | |
AGTAAAGTTGTGAAATGGGT+CGG | + | chr4_2:69131053-69131072 | None:intergenic | 35.0% | |
TCTAACTTCAAATCCGAATC+TGG | - | chr4_2:69131085-69131104 | Msa0618240:three_prime_UTR | 35.0% | |
CTAACTTCAAATCCGAATCT+GGG | - | chr4_2:69131086-69131105 | Msa0618240:three_prime_UTR | 35.0% | |
TACAGCATTCATTCACATCA+AGG | + | chr4_2:69131275-69131294 | None:intergenic | 35.0% | |
AATGCAGAGACATCAACATA+TGG | - | chr4_2:69131448-69131467 | Msa0618240:CDS | 35.0% | |
GAAAAAAATATCTACCCTCC+CGG | + | chr4_2:69131498-69131517 | None:intergenic | 35.0% | |
CCTACAATTATGAGCTTACA+AGG | + | chr4_2:69131573-69131592 | None:intergenic | 35.0% | |
CCTTGTAAGCTCATAATTGT+AGG | - | chr4_2:69131570-69131589 | Msa0618240:intron | 35.0% | |
GATTGTGAGTGACATTATTG+TGG | - | chr4_2:69131630-69131649 | Msa0618240:CDS | 35.0% | |
ATTATTGTGGCTGTCAGATT+AGG | - | chr4_2:69131643-69131662 | Msa0618240:CDS | 35.0% | |
CTTTGTAGTCAGATTCTCTA+CGG | + | chr4_2:69131921-69131940 | None:intergenic | 35.0% | |
GTGAATATGAAGAAGATCAG+GGG | + | chr4_2:69132049-69132068 | None:intergenic | 35.0% | |
GACAGCTATCATGAAGAAAT+TGG | + | chr4_2:69132104-69132123 | None:intergenic | 35.0% | |
!! | TCAATATATGGGGGTATTGA+GGG | + | chr4_2:69132264-69132283 | None:intergenic | 35.0% |
!! | ATCAATATATGGGGGTATTG+AGG | + | chr4_2:69132265-69132284 | None:intergenic | 35.0% |
TCCAGGATATCAATATATGG+GGG | + | chr4_2:69132273-69132292 | None:intergenic | 35.0% | |
AAAGAAATAAGGCCAAATCC+AGG | + | chr4_2:69132290-69132309 | None:intergenic | 35.0% | |
GGAGAGACCATATAAATTGA+TGG | - | chr4_2:69132381-69132400 | Msa0618240:intron | 35.0% | |
GAGACCATATAAATTGATGG+GGG | - | chr4_2:69132384-69132403 | Msa0618240:intron | 35.0% | |
AGACCATATAAATTGATGGG+GGG | - | chr4_2:69132385-69132404 | Msa0618240:intron | 35.0% | |
AAACCCCCCATCAATTTATA+TGG | + | chr4_2:69132391-69132410 | None:intergenic | 35.0% | |
AAACAATAGTCATGGTAGAC+AGG | - | chr4_2:69132712-69132731 | Msa0618240:intron | 35.0% | |
CAGTGACAACATATTAGCTA+AGG | - | chr4_2:69132780-69132799 | Msa0618240:intron | 35.0% | |
ACAGAGAGTGATATATAGCA+CGG | + | chr4_2:69133008-69133027 | None:intergenic | 35.0% | |
GAGTAAGACATCTGAAAGAA+TGG | + | chr4_2:69133042-69133061 | None:intergenic | 35.0% | |
! | ACTTATGCTGAAGTTTCTAG+TGG | - | chr4_2:69133247-69133266 | Msa0618240:intron | 35.0% |
ACATGAAATCTGGTCATTCT+GGG | + | chr4_2:69133293-69133312 | None:intergenic | 35.0% | |
TGTGCCAATTGTCAAACAAT+TGG | - | chr4_2:69133310-69133329 | Msa0618240:intron | 35.0% | |
! | GACTTTTGATACTATAGAGG+AGG | - | chr4_2:69133888-69133907 | Msa0618240:intron | 35.0% |
ATCAAATGGTTTCAGTTTCC+AGG | - | chr4_2:69133986-69134005 | Msa0618240:CDS | 35.0% | |
CCATTGATCATTTGTCTCAA+AGG | + | chr4_2:69134020-69134039 | None:intergenic | 35.0% | |
!! | CCTTTGAGACAAATGATCAA+TGG | - | chr4_2:69134017-69134036 | Msa0618240:intron | 35.0% |
ACACATGTAAGTCAAAAGCT+TGG | - | chr4_2:69134104-69134123 | Msa0618240:intron | 35.0% | |
TAAATAGAGGAAAAGAGACG+AGG | - | chr4_2:69134266-69134285 | Msa0618240:intron | 35.0% | |
!! | AGGAAATACTCTGAAGTGAT+AGG | - | chr4_2:69134286-69134305 | Msa0618240:intron | 35.0% |
GATATTCTTGGTCAAGTACA+TGG | - | chr4_2:69134362-69134381 | Msa0618240:intron | 35.0% | |
TATTCTTGGTCAAGTACATG+GGG | - | chr4_2:69134364-69134383 | Msa0618240:intron | 35.0% | |
ATCAGAAAGAGGAGATTTCT+AGG | - | chr4_2:69134944-69134963 | Msa0618240:intron | 35.0% | |
TTTACCTAGAACTGCCATAT+TGG | + | chr4_2:69135055-69135074 | None:intergenic | 35.0% | |
!! | AGTTCTAGGTAAAGAAGCTT+CGG | - | chr4_2:69135062-69135081 | Msa0618240:intron | 35.0% |
!! | AGCAAAGACTGACTTTTCAA+AGG | - | chr4_2:69135112-69135131 | Msa0618240:intron | 35.0% |
!!! | TTTTCAAAGGCTTGTTGCTA+TGG | - | chr4_2:69135125-69135144 | Msa0618240:intron | 35.0% |
! | TGCCAAACTTGTAAGTGTTT+TGG | - | chr4_2:69135184-69135203 | Msa0618240:CDS | 35.0% |
ACAATAGCAACCATCATCTT+AGG | + | chr4_2:69135576-69135595 | None:intergenic | 35.0% | |
! | AGTTTGAGGGATTTGACTTA+TGG | - | chr4_2:69135806-69135825 | Msa0618240:intron | 35.0% |
! | TTTTGGTAAGCATAGAGACT+CGG | + | chr4_2:69136516-69136535 | None:intergenic | 35.0% |
AAAGAATGAACAGCACAAAG+TGG | + | chr4_2:69136681-69136700 | None:intergenic | 35.0% | |
!!! | TTTGCTTTGTCTCCCTTTTT+TGG | - | chr4_2:69136698-69136717 | Msa0618240:intron | 35.0% |
GATGAACAAAAGGAATGTAG+AGG | - | chr4_2:69136745-69136764 | Msa0618240:intron | 35.0% | |
AACAAAAGGAATGTAGAGGA+TGG | - | chr4_2:69136749-69136768 | Msa0618240:intron | 35.0% | |
ATTCTGTGATAACAGACAAG+AGG | + | chr4_2:69136795-69136814 | None:intergenic | 35.0% | |
! | GTGCTTATGGTAATGTCTAT+TGG | - | chr4_2:69136986-69137005 | Msa0618240:intron | 35.0% |
!! | TTGTTTCCTAAAAGCGTCCA+TGG | + | chr4_2:69130978-69130997 | None:intergenic | 40.0% |
GCAAGTTGTCAAACAACAAC+AGG | - | chr4_2:69131015-69131034 | Msa0618240:three_prime_UTR | 40.0% | |
ATAAAACAATTCAGCGGCAG+CGG | - | chr4_2:69131386-69131405 | Msa0618240:CDS | 40.0% | |
TTATGAGAGCTCAGATGTTG+TGG | - | chr4_2:69131409-69131428 | Msa0618240:CDS | 40.0% | |
AACATATGGAGAAGCTGTAC+AGG | - | chr4_2:69131462-69131481 | Msa0618240:CDS | 40.0% | |
ACATATGGAGAAGCTGTACA+GGG | - | chr4_2:69131463-69131482 | Msa0618240:CDS | 40.0% | |
AGAAAGCAAACAGAGTCTAG+TGG | - | chr4_2:69131705-69131724 | Msa0618240:intron | 40.0% | |
AAGTGAGTTGCTCACATTAG+AGG | - | chr4_2:69131874-69131893 | Msa0618240:intron | 40.0% | |
ACCCAAACTTTCCGAAAAGA+CGG | - | chr4_2:69132016-69132035 | Msa0618240:intron | 40.0% | |
! | ACCGTCTTTTCGGAAAGTTT+GGG | + | chr4_2:69132020-69132039 | None:intergenic | 40.0% |
AATATGAAGAAGATCAGGGG+TGG | + | chr4_2:69132046-69132065 | None:intergenic | 40.0% | |
TGATAGCTGTCCATTCTGTT+AGG | - | chr4_2:69132113-69132132 | Msa0618240:intron | 40.0% | |
AGTGAATGGACCTAACAGAA+TGG | + | chr4_2:69132126-69132145 | None:intergenic | 40.0% | |
GAATAGGAATTCTGCTAGAG+AGG | + | chr4_2:69132150-69132169 | None:intergenic | 40.0% | |
! | ATAGAGGCGTAATTGGGAAT+AGG | + | chr4_2:69132166-69132185 | None:intergenic | 40.0% |
! | AAGGGAATAGAGGCGTAATT+GGG | + | chr4_2:69132172-69132191 | None:intergenic | 40.0% |
! | AAAGGGAATAGAGGCGTAAT+TGG | + | chr4_2:69132173-69132192 | None:intergenic | 40.0% |
CTTCTGTAGACTTTGATTGG+AGG | - | chr4_2:69132200-69132219 | Msa0618240:intron | 40.0% | |
GGCCCATTAGATTTCCTTAT+TGG | - | chr4_2:69132236-69132255 | Msa0618240:intron | 40.0% | |
ACCCCCATATATTGATATCC+TGG | - | chr4_2:69132269-69132288 | Msa0618240:intron | 40.0% | |
TTAAGTGAGGTAGTGAGAGA+GGG | - | chr4_2:69132360-69132379 | Msa0618240:intron | 40.0% | |
ACAAAACTGTCATCTGATGC+AGG | - | chr4_2:69132526-69132545 | Msa0618240:CDS | 40.0% | |
!! | CTTTTTCCTGTGATTTGTGG+TGG | - | chr4_2:69132638-69132657 | Msa0618240:intron | 40.0% |
GACAGGAACAAAACTTTCTG+AGG | - | chr4_2:69132729-69132748 | Msa0618240:intron | 40.0% | |
TGCTCGCAAACATGTAGAAA+AGG | - | chr4_2:69132822-69132841 | Msa0618240:intron | 40.0% | |
! | AGGAGCACGAAGAATTGAAT+CGG | - | chr4_2:69132842-69132861 | Msa0618240:intron | 40.0% |
CACATGAAATCTGGTCATTC+TGG | + | chr4_2:69133294-69133313 | None:intergenic | 40.0% | |
GACAATTGGCACATGAAATC+TGG | + | chr4_2:69133303-69133322 | None:intergenic | 40.0% | |
CTGGCCAATTGTTTGACAAT+TGG | + | chr4_2:69133317-69133336 | None:intergenic | 40.0% | |
TGTTACCTTACCTTATCACG+TGG | - | chr4_2:69133474-69133493 | Msa0618240:intron | 40.0% | |
! | AAAAAAGGGAGCACAGTAAG+AGG | + | chr4_2:69133786-69133805 | None:intergenic | 40.0% |
! | TGGTTTCAGTTTCCAGGTTT+TGG | - | chr4_2:69133992-69134011 | Msa0618240:CDS | 40.0% |
ATCTTGCTCAACGGTATAGT+CGG | - | chr4_2:69134063-69134082 | Msa0618240:intron | 40.0% | |
ACAGGTGTAATACTGATAGG+CGG | + | chr4_2:69134683-69134702 | None:intergenic | 40.0% | |
CACACAGGTGTAATACTGAT+AGG | + | chr4_2:69134686-69134705 | None:intergenic | 40.0% | |
! | CTCCTTTTTCCCTCAACTTT+GGG | + | chr4_2:69134723-69134742 | None:intergenic | 40.0% |
! | AGATTTCTAGGAGACAAGCA+CGG | - | chr4_2:69134956-69134975 | Msa0618240:intron | 40.0% |
AAAGCCAATATGGCAGTTCT+AGG | - | chr4_2:69135048-69135067 | Msa0618240:intron | 40.0% | |
!! | TCAAGAGTTGCAGCCATTTT+TGG | - | chr4_2:69135267-69135286 | Msa0618240:CDS | 40.0% |
CGATTCTTTCTTCTGTCTGT+CGG | + | chr4_2:69135473-69135492 | None:intergenic | 40.0% | |
CGACAGACAGAAGAAAGAAT+CGG | - | chr4_2:69135471-69135490 | Msa0618240:intron | 40.0% | |
! | TGTTTTCTCTGAGCCATTCT+GGG | + | chr4_2:69135515-69135534 | None:intergenic | 40.0% |
! | TTGTTTTCTCTGAGCCATTC+TGG | + | chr4_2:69135516-69135535 | None:intergenic | 40.0% |
AACAATGTACTTCTTGGCTG+AGG | - | chr4_2:69135531-69135550 | Msa0618240:intron | 40.0% | |
! | GAGGGATTTGACTTATGGTT+AGG | - | chr4_2:69135811-69135830 | Msa0618240:intron | 40.0% |
GGAACCCATGATATCTTGAA+AGG | + | chr4_2:69136014-69136033 | None:intergenic | 40.0% | |
TCTATGAGAGGAAGCTTCAA+AGG | - | chr4_2:69136136-69136155 | Msa0618240:intron | 40.0% | |
CTATGAGAGGAAGCTTCAAA+GGG | - | chr4_2:69136137-69136156 | Msa0618240:intron | 40.0% | |
CTTCATGAACTGATCTTTGG+TGG | - | chr4_2:69136306-69136325 | Msa0618240:intron | 40.0% | |
! | TTTTCCGTTTCAGCATCGTA+AGG | + | chr4_2:69136359-69136378 | None:intergenic | 40.0% |
TTACGATGCTGAAACGGAAA+AGG | - | chr4_2:69136358-69136377 | Msa0618240:intron | 40.0% | |
GAAGGAGAATGCAATGGTAA+AGG | - | chr4_2:69136574-69136593 | Msa0618240:CDS | 40.0% | |
GAGAATGCAATGGTAAAGGA+GGG | - | chr4_2:69136578-69136597 | Msa0618240:CDS | 40.0% | |
AAAAGGAATGTAGAGGATGG+TGG | - | chr4_2:69136752-69136771 | Msa0618240:intron | 40.0% | |
AAGAAAAATGTGTCCAGCTG+TGG | - | chr4_2:69136821-69136840 | Msa0618240:intron | 40.0% | |
AGAAAAATGTGTCCAGCTGT+GGG | - | chr4_2:69136822-69136841 | Msa0618240:intron | 40.0% | |
TAATCTGCAAGAGTGGAGTA+GGG | - | chr4_2:69137050-69137069 | Msa0618240:exon | 40.0% | |
ATTGGAATTTGAGCTAGTGC+AGG | + | chr4_2:69137139-69137158 | None:intergenic | 40.0% | |
!! | TTTCCTAAAAGCGTCCATGG+CGG | + | chr4_2:69130975-69130994 | None:intergenic | 45.0% |
! | ACGGATTACTAGAGCGAATC+TGG | + | chr4_2:69131902-69131921 | None:intergenic | 45.0% |
! | CTTTTCGGAAAGTTTGGGTG+TGG | + | chr4_2:69132015-69132034 | None:intergenic | 45.0% |
! | GACCGTCTTTTCGGAAAGTT+TGG | + | chr4_2:69132021-69132040 | None:intergenic | 45.0% |
TCTGCTAGAGAGGAAGTGAA+TGG | + | chr4_2:69132140-69132159 | None:intergenic | 45.0% | |
GATTGGAGGCCAAATTGTTG+CGG | - | chr4_2:69132214-69132233 | Msa0618240:intron | 45.0% | |
ATTGGAGGCCAAATTGTTGC+GGG | - | chr4_2:69132215-69132234 | Msa0618240:intron | 45.0% | |
!! | GGGTATTGAGGGAACCAATA+AGG | + | chr4_2:69132253-69132272 | None:intergenic | 45.0% |
CTTAAGTGAGGTAGTGAGAG+AGG | - | chr4_2:69132359-69132378 | Msa0618240:intron | 45.0% | |
CTAAGTCCACCACAAATCAC+AGG | + | chr4_2:69132647-69132666 | None:intergenic | 45.0% | |
!! | TCTGAGGAGTGCTGTAGATA+TGG | - | chr4_2:69132745-69132764 | Msa0618240:CDS | 45.0% |
AGCATCGCCATATACTGATG+CGG | + | chr4_2:69132806-69132825 | None:intergenic | 45.0% | |
!! | GAATCGGCTTTTATCTTCCC+AGG | - | chr4_2:69132858-69132877 | Msa0618240:intron | 45.0% |
CTAAATGCAGCCACGTGATA+AGG | + | chr4_2:69133487-69133506 | None:intergenic | 45.0% | |
CTTATCACGTGGCTGCATTT+AGG | - | chr4_2:69133485-69133504 | Msa0618240:intron | 45.0% | |
CTGTCTGCATGACATGCATT+GGG | - | chr4_2:69133534-69133553 | Msa0618240:intron | 45.0% | |
TGTCTGCATGACATGCATTG+GGG | - | chr4_2:69133535-69133554 | Msa0618240:intron | 45.0% | |
GTCTCAAAGGATCCAAAACC+TGG | + | chr4_2:69134007-69134026 | None:intergenic | 45.0% | |
AATGATCAATGGCCCACCTT+TGG | - | chr4_2:69134028-69134047 | Msa0618240:intron | 45.0% | |
GACTATACCGTTGAGCAAGA+TGG | + | chr4_2:69134064-69134083 | None:intergenic | 45.0% | |
AGGTGTAATACTGATAGGCG+GGG | + | chr4_2:69134681-69134700 | None:intergenic | 45.0% | |
CAGGTGTAATACTGATAGGC+GGG | + | chr4_2:69134682-69134701 | None:intergenic | 45.0% | |
GACAGCTATGTAATGCACAC+AGG | + | chr4_2:69134701-69134720 | None:intergenic | 45.0% | |
ACATAGCTGTCCCAAAGTTG+AGG | - | chr4_2:69134710-69134729 | Msa0618240:intron | 45.0% | |
CATAGCTGTCCCAAAGTTGA+GGG | - | chr4_2:69134711-69134730 | Msa0618240:intron | 45.0% | |
GTCCCAAAGTTGAGGGAAAA+AGG | - | chr4_2:69134718-69134737 | Msa0618240:intron | 45.0% | |
! | CCTCCTTTTTCCCTCAACTT+TGG | + | chr4_2:69134724-69134743 | None:intergenic | 45.0% |
CCAAAGTTGAGGGAAAAAGG+AGG | - | chr4_2:69134721-69134740 | Msa0618240:intron | 45.0% | |
! | GATTTCTAGGAGACAAGCAC+GGG | - | chr4_2:69134957-69134976 | Msa0618240:intron | 45.0% |
TAAAGAAGCTTCGGCTGCAT+TGG | - | chr4_2:69135071-69135090 | Msa0618240:intron | 45.0% | |
! | ATGAACTGATCTTTGGTGGC+TGG | - | chr4_2:69136310-69136329 | Msa0618240:intron | 45.0% |
GCATCCTTACGATGCTGAAA+CGG | - | chr4_2:69136352-69136371 | Msa0618240:intron | 45.0% | |
AGGGTGACTTTATTGTCGTG+CGG | - | chr4_2:69136396-69136415 | Msa0618240:intron | 45.0% | |
TGACTTTATTGTCGTGCGGA+AGG | - | chr4_2:69136400-69136419 | Msa0618240:intron | 45.0% | |
TTACACAGGTGAGCCAAACA+GGG | - | chr4_2:69136545-69136564 | Msa0618240:CDS | 45.0% | |
TGGTCAGAAGGAGAATGCAA+TGG | - | chr4_2:69136568-69136587 | Msa0618240:CDS | 45.0% | |
GGAGAATGCAATGGTAAAGG+AGG | - | chr4_2:69136577-69136596 | Msa0618240:CDS | 45.0% | |
AATGCAATGGTAAAGGAGGG+TGG | - | chr4_2:69136581-69136600 | Msa0618240:CDS | 45.0% | |
! | CTTCTGGCTACGTGGAAAAA+CGG | - | chr4_2:69136608-69136627 | Msa0618240:CDS | 45.0% |
GAGAATCCCATCTAGCAACA+TGG | - | chr4_2:69136633-69136652 | Msa0618240:CDS | 45.0% | |
CATGGCTGGAGAAGTTTACT+AGG | - | chr4_2:69136651-69136670 | Msa0618240:intron | 45.0% | |
!! | GTAGAGGATGGTGGAATTGA+TGG | - | chr4_2:69136761-69136780 | Msa0618240:intron | 45.0% |
GAAAAATGTGTCCAGCTGTG+GGG | - | chr4_2:69136823-69136842 | Msa0618240:intron | 45.0% | |
TATGTAAGTTACCCCACAGC+TGG | + | chr4_2:69136837-69136856 | None:intergenic | 45.0% | |
GCTGTGGGGTAACTTACATA+CGG | - | chr4_2:69136837-69136856 | Msa0618240:intron | 45.0% | |
GTAATCTGCAAGAGTGGAGT+AGG | - | chr4_2:69137049-69137068 | Msa0618240:exon | 45.0% | |
GACAGGTATCACATTGCAGA+GGG | + | chr4_2:69137219-69137238 | None:intergenic | 45.0% | |
TGACAGGTATCACATTGCAG+AGG | + | chr4_2:69137220-69137239 | None:intergenic | 45.0% | |
!!! | ATTATAATTTTAATTATTTC+GGG | + | chr4_2:69134816-69134835 | None:intergenic | 5.0% |
! | CTAATGGGCCCGCAACAATT+TGG | + | chr4_2:69132226-69132245 | None:intergenic | 50.0% |
GCTAAGGCCGCATCAGTATA+TGG | - | chr4_2:69132796-69132815 | Msa0618240:intron | 50.0% | |
TGCAGCCACGTGATAAGGTA+AGG | + | chr4_2:69133482-69133501 | None:intergenic | 50.0% | |
GCATGTCATGCAGACAGCAA+GGG | + | chr4_2:69133531-69133550 | None:intergenic | 50.0% | |
TGCATGTCATGCAGACAGCA+AGG | + | chr4_2:69133532-69133551 | None:intergenic | 50.0% | |
GCTGTCTGCATGACATGCAT+TGG | - | chr4_2:69133533-69133552 | Msa0618240:intron | 50.0% | |
GTCTGCATGACATGCATTGG+GGG | - | chr4_2:69133536-69133555 | Msa0618240:intron | 50.0% | |
TCTGCATGACATGCATTGGG+GGG | - | chr4_2:69133537-69133556 | Msa0618240:intron | 50.0% | |
!! | GTGCAGAAGGGTGTCGAAAA+TGG | + | chr4_2:69133831-69133850 | None:intergenic | 50.0% |
ATGCTCGCCATCTTGCTCAA+CGG | - | chr4_2:69134054-69134073 | Msa0618240:intron | 50.0% | |
! | TAGGAGACAAGCACGGGTTA+GGG | - | chr4_2:69134963-69134982 | Msa0618240:intron | 50.0% |
GGAATCTCAAACTGCTGAGC+AGG | - | chr4_2:69134984-69135003 | Msa0618240:intron | 50.0% | |
GCAGGAGCTGAAAGCCAATA+TGG | - | chr4_2:69135038-69135057 | Msa0618240:intron | 50.0% | |
! | TCTGGGACATAACGACTGGA+GGG | + | chr4_2:69135498-69135517 | None:intergenic | 50.0% |
!! | TTCTGGGACATAACGACTGG+AGG | + | chr4_2:69135499-69135518 | None:intergenic | 50.0% |
!! | CCATTCTGGGACATAACGAC+TGG | + | chr4_2:69135502-69135521 | None:intergenic | 50.0% |
CCAGTCGTTATGTCCCAGAA+TGG | - | chr4_2:69135499-69135518 | Msa0618240:intron | 50.0% | |
TCAAAGGGCGAGTAGTATCC+AGG | - | chr4_2:69136152-69136171 | Msa0618240:intron | 50.0% | |
GTTACACAGGTGAGCCAAAC+AGG | - | chr4_2:69136544-69136563 | Msa0618240:CDS | 50.0% | |
AAAGGAGGGTGGTTTCCTTC+TGG | - | chr4_2:69136592-69136611 | Msa0618240:CDS | 50.0% | |
! | CGTTTTTCCACGTAGCCAGA+AGG | + | chr4_2:69136610-69136629 | None:intergenic | 50.0% |
ATCCCATCTAGCAACATGGC+TGG | - | chr4_2:69136637-69136656 | Msa0618240:CDS | 50.0% | |
CTCCAGCCATGTTGCTAGAT+GGG | + | chr4_2:69136642-69136661 | None:intergenic | 50.0% | |
TCTCCAGCCATGTTGCTAGA+TGG | + | chr4_2:69136643-69136662 | None:intergenic | 50.0% | |
GTGGGGTAACTTACATACGG+TGG | - | chr4_2:69136840-69136859 | Msa0618240:intron | 50.0% | |
AGGGCTGTAATCTGCAAGAG+TGG | - | chr4_2:69137043-69137062 | Msa0618240:exon | 50.0% | |
TCACTGTCACTGTACCGCCA+TGG | - | chr4_2:69130958-69130977 | Msa0618240:three_prime_UTR | 55.0% | |
! | GTACCGCCATGGACGCTTTT+AGG | - | chr4_2:69130969-69130988 | Msa0618240:three_prime_UTR | 55.0% |
! | GGGGTGGTAGACCGTCTTTT+CGG | + | chr4_2:69132030-69132049 | None:intergenic | 55.0% |
CTGCATGACATGCATTGGGG+GGG | - | chr4_2:69133538-69133557 | Msa0618240:intron | 55.0% | |
TGCATGACATGCATTGGGGG+GGG | - | chr4_2:69133539-69133558 | Msa0618240:intron | 55.0% | |
GATCAATGGCCCACCTTTGG+AGG | - | chr4_2:69134031-69134050 | Msa0618240:intron | 55.0% | |
AGATGGCGAGCATCCTCCAA+AGG | + | chr4_2:69134047-69134066 | None:intergenic | 55.0% | |
CTAGGAGACAAGCACGGGTT+AGG | - | chr4_2:69134962-69134981 | Msa0618240:intron | 55.0% | |
TGCCAAACTGCATGCTGCAG+AGG | - | chr4_2:69135008-69135027 | Msa0618240:intron | 55.0% | |
TGCCTCTGCAGCATGCAGTT+TGG | + | chr4_2:69135013-69135032 | None:intergenic | 55.0% | |
TGCTGCAGAGGCAAAGATGC+AGG | - | chr4_2:69135020-69135039 | Msa0618240:intron | 55.0% | |
CTGGGACATAACGACTGGAG+GGG | + | chr4_2:69135497-69135516 | None:intergenic | 55.0% | |
! | CGGTTCTGACGATGTGAGTG+AGG | - | chr4_2:69136252-69136271 | Msa0618240:intron | 55.0% |
AGCCAAACAGGGTGGTCAGA+AGG | - | chr4_2:69136556-69136575 | Msa0618240:CDS | 55.0% | |
CTCCTTCTGACCACCCTGTT+TGG | + | chr4_2:69136561-69136580 | None:intergenic | 55.0% | |
! | GTGGTTTCCTTCTGGCTACG+TGG | - | chr4_2:69136600-69136619 | Msa0618240:CDS | 55.0% |
AGAGTGGAGTAGGGTGAGTG+AGG | - | chr4_2:69137059-69137078 | Msa0618240:exon | 55.0% | |
AGGGTGAGTGAGGACCATGT+CGG | - | chr4_2:69137069-69137088 | Msa0618240:five_prime_UTR | 55.0% | |
GCATGACATGCATTGGGGGG+GGG | - | chr4_2:69133540-69133559 | Msa0618240:intron | 60.0% | |
CATGACATGCATTGGGGGGG+GGG | - | chr4_2:69133541-69133560 | Msa0618240:intron | 60.0% | |
ATGACATGCATTGGGGGGGG+GGG | - | chr4_2:69133542-69133561 | Msa0618240:intron | 60.0% | |
GGCGAGCATCCTCCAAAGGT+GGG | + | chr4_2:69134043-69134062 | None:intergenic | 60.0% | |
TGGCGAGCATCCTCCAAAGG+TGG | + | chr4_2:69134044-69134063 | None:intergenic | 60.0% | |
GTGGCTGGTGCATCTCTTGC+AGG | - | chr4_2:69136325-69136344 | Msa0618240:intron | 60.0% | |
CACAGGTGAGCCAAACAGGG+TGG | - | chr4_2:69136548-69136567 | Msa0618240:CDS | 60.0% | |
CTGTACAGGGCCACTCGTGC+CGG | - | chr4_2:69131476-69131495 | Msa0618240:intron | 65.0% | |
TGTACAGGGCCACTCGTGCC+GGG | - | chr4_2:69131477-69131496 | Msa0618240:intron | 65.0% | |
ATCTACCCTCCCGGCACGAG+TGG | + | chr4_2:69131489-69131508 | None:intergenic | 65.0% | |
TGACATGCATTGGGGGGGGG+GGG | - | chr4_2:69133543-69133562 | Msa0618240:intron | 65.0% | |
GACATGCATTGGGGGGGGGG+GGG | - | chr4_2:69133544-69133563 | Msa0618240:intron | 70.0% | |
ACATGCATTGGGGGGGGGGG+GGG | - | chr4_2:69133545-69133564 | Msa0618240:intron | 70.0% | |
ACAGGGCCACTCGTGCCGGG+AGG | - | chr4_2:69131480-69131499 | Msa0618240:intron | 75.0% | |
CAGGGCCACTCGTGCCGGGA+GGG | - | chr4_2:69131481-69131500 | Msa0618240:intron | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_2 | gene | 69130771 | 69137266 | 69130771 | ID=Msa0618240;Name=Msa0618240 |
chr4_2 | mRNA | 69130771 | 69137266 | 69130771 | ID=Msa0618240-mRNA-1;Parent=Msa0618240;Name=Msa0618240-mRNA-1;_AED=0.08;_eAED=0.08;_QI=206|1|1|1|1|1|10|594|348 |
chr4_2 | exon | 69130771 | 69131484 | 69130771 | ID=Msa0618240-mRNA-1:exon:19958;Parent=Msa0618240-mRNA-1 |
chr4_2 | exon | 69131616 | 69131690 | 69131616 | ID=Msa0618240-mRNA-1:exon:19957;Parent=Msa0618240-mRNA-1 |
chr4_2 | exon | 69132485 | 69132574 | 69132485 | ID=Msa0618240-mRNA-1:exon:19956;Parent=Msa0618240-mRNA-1 |
chr4_2 | exon | 69132732 | 69132794 | 69132732 | ID=Msa0618240-mRNA-1:exon:19955;Parent=Msa0618240-mRNA-1 |
chr4_2 | exon | 69132891 | 69133088 | 69132891 | ID=Msa0618240-mRNA-1:exon:19954;Parent=Msa0618240-mRNA-1 |
chr4_2 | exon | 69133928 | 69134029 | 69133928 | ID=Msa0618240-mRNA-1:exon:19953;Parent=Msa0618240-mRNA-1 |
chr4_2 | exon | 69135158 | 69135303 | 69135158 | ID=Msa0618240-mRNA-1:exon:19952;Parent=Msa0618240-mRNA-1 |
chr4_2 | exon | 69135420 | 69135489 | 69135420 | ID=Msa0618240-mRNA-1:exon:19951;Parent=Msa0618240-mRNA-1 |
chr4_2 | exon | 69136535 | 69136657 | 69136535 | ID=Msa0618240-mRNA-1:exon:19950;Parent=Msa0618240-mRNA-1 |
chr4_2 | exon | 69137001 | 69137266 | 69137001 | ID=Msa0618240-mRNA-1:exon:19949;Parent=Msa0618240-mRNA-1 |
chr4_2 | five_prime_UTR | 69137061 | 69137266 | 69137061 | ID=Msa0618240-mRNA-1:five_prime_utr;Parent=Msa0618240-mRNA-1 |
chr4_2 | CDS | 69137001 | 69137060 | 69137001 | ID=Msa0618240-mRNA-1:cds;Parent=Msa0618240-mRNA-1 |
chr4_2 | CDS | 69136535 | 69136657 | 69136535 | ID=Msa0618240-mRNA-1:cds;Parent=Msa0618240-mRNA-1 |
chr4_2 | CDS | 69135420 | 69135489 | 69135420 | ID=Msa0618240-mRNA-1:cds;Parent=Msa0618240-mRNA-1 |
chr4_2 | CDS | 69135158 | 69135303 | 69135158 | ID=Msa0618240-mRNA-1:cds;Parent=Msa0618240-mRNA-1 |
chr4_2 | CDS | 69133928 | 69134029 | 69133928 | ID=Msa0618240-mRNA-1:cds;Parent=Msa0618240-mRNA-1 |
chr4_2 | CDS | 69132891 | 69133088 | 69132891 | ID=Msa0618240-mRNA-1:cds;Parent=Msa0618240-mRNA-1 |
chr4_2 | CDS | 69132732 | 69132794 | 69132732 | ID=Msa0618240-mRNA-1:cds;Parent=Msa0618240-mRNA-1 |
chr4_2 | CDS | 69132485 | 69132574 | 69132485 | ID=Msa0618240-mRNA-1:cds;Parent=Msa0618240-mRNA-1 |
chr4_2 | CDS | 69131616 | 69131690 | 69131616 | ID=Msa0618240-mRNA-1:cds;Parent=Msa0618240-mRNA-1 |
chr4_2 | CDS | 69131365 | 69131484 | 69131365 | ID=Msa0618240-mRNA-1:cds;Parent=Msa0618240-mRNA-1 |
chr4_2 | three_prime_UTR | 69130771 | 69131364 | 69130771 | ID=Msa0618240-mRNA-1:three_prime_utr;Parent=Msa0618240-mRNA-1 |
Gene Sequence |
Protein sequence |