Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0702780 | PNX89464.1 | 62.500 | 80 | 22 | 2 | 81 | 159 | 1 | 73 | 2.33e-21 | 95.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0702780 | sp|Q8VZU2|SY132_ARATH | 57.447 | 47 | 20 | 0 | 113 | 159 | 83 | 129 | 1.04e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0702780 | A0A2K3MFC2 | 62.500 | 80 | 22 | 2 | 81 | 159 | 1 | 73 | 1.11e-21 | 95.5 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0657730 | Msa0702780 | 0.910396 | 1.963913e-82 | -8.615850e-47 |
| Msa0702780 | Msa0828940 | 0.915621 | 4.737800e-85 | -8.615850e-47 |
| Msa0702780 | Msa0893130 | 0.842189 | 3.010562e-58 | -8.615850e-47 |
| Msa0702780 | Msa0953120 | 0.800523 | 1.384734e-48 | -8.615850e-47 |
| Msa0702780 | Msa1153410 | 0.808913 | 2.451766e-50 | -8.615850e-47 |
| Msa0223260 | Msa0702780 | 0.812593 | 3.920769e-51 | -8.615850e-47 |
| Msa0272830 | Msa0702780 | 0.814579 | 1.433996e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0702780 | MtrunA17_Chr2g0322801 | 93.617 | 47 | 3 | 0 | 113 | 159 | 88 | 134 | 5.81e-24 | 95.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0702780 | AT5G08080.5 | 57.447 | 47 | 20 | 0 | 113 | 159 | 83 | 129 | 8.08e-13 | 64.7 |
| Msa0702780 | AT5G08080.2 | 57.447 | 47 | 20 | 0 | 113 | 159 | 83 | 129 | 8.08e-13 | 64.7 |
| Msa0702780 | AT5G08080.1 | 57.447 | 47 | 20 | 0 | 113 | 159 | 83 | 129 | 1.06e-12 | 65.1 |
| Msa0702780 | AT5G08080.4 | 57.447 | 47 | 20 | 0 | 113 | 159 | 83 | 129 | 1.06e-12 | 65.1 |
| Msa0702780 | AT5G08080.3 | 57.447 | 47 | 20 | 0 | 113 | 159 | 94 | 140 | 1.08e-12 | 65.1 |
| Msa0702780 | AT3G03800.2 | 55.319 | 47 | 21 | 0 | 113 | 159 | 84 | 130 | 4.67e-12 | 63.5 |
| Msa0702780 | AT3G03800.1 | 55.319 | 47 | 21 | 0 | 113 | 159 | 84 | 130 | 4.67e-12 | 63.5 |
Find 43 sgRNAs with CRISPR-Local
Find 321 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTAATAGGTTTACACTTT+TGG | 0.189771 | 4_4:+74571212 | Msa0702780:intron |
| GATGGAGGAAGAAGGGAAAT+TGG | 0.296072 | 4_4:+74566514 | Msa0702780:CDS |
| TTAAGAAGCGCAAGTCTCTT+TGG | 0.358710 | 4_4:+74567639 | Msa0702780:CDS |
| GGGTTGAAACTGCTCAGTTC+AGG | 0.385105 | 4_4:+74571259 | Msa0702780:CDS |
| CGTCTATGTTTCTTAATCTC+AGG | 0.392267 | 4_4:+74567542 | Msa0702780:CDS |
| ATCTGTTAGCAGCCGCTGAT+TGG | 0.396087 | 4_4:-74571632 | None:intergenic |
| CTGTACAAAGTGCCAATGTT+TGG | 0.406462 | 4_4:+74571782 | Msa0702780:three_prime_UTR |
| AATGGAGGGAGAGGAGAAGA+AGG | 0.408209 | 4_4:+74566481 | Msa0702780:exon |
| AGAAGGGAAATTGGAGAAGA+AGG | 0.422017 | 4_4:+74566523 | Msa0702780:CDS |
| AAGAAGTCGATGGAGGAAGA+AGG | 0.446162 | 4_4:+74566506 | Msa0702780:CDS |
| CATTCTTGCTCCGTCAATAC+CGG | 0.466523 | 4_4:-74568383 | None:intergenic |
| TTATGAAGAGGATTTGAAGC+AGG | 0.468923 | 4_4:+74567378 | Msa0702780:CDS |
| GAAAAGGATATTGATGAGGT+TGG | 0.486934 | 4_4:+74568170 | Msa0702780:intron |
| AGCAGTTTCAACCCCGGCCA+TGG | 0.495635 | 4_4:-74571250 | None:intergenic |
| AGAAGTCGATGGAGGAAGAA+GGG | 0.498966 | 4_4:+74566507 | Msa0702780:CDS |
| CAAAAGCCTGGCTGTGAGAA+GGG | 0.499127 | 4_4:+74568358 | Msa0702780:CDS |
| CCGGTTCCCTTCTCACAGCC+AGG | 0.501105 | 4_4:-74568364 | None:intergenic |
| TTAGCAGCCGCTGATTGGTA+TGG | 0.505830 | 4_4:-74571627 | None:intergenic |
| CCTGGCTGTGAGAAGGGAAC+CGG | 0.506291 | 4_4:+74568364 | Msa0702780:CDS |
| TGCATAGCATAAAACTGCAT+TGG | 0.512421 | 4_4:+74571727 | Msa0702780:three_prime_UTR |
| GAACGAGAGAATGGAGGGAG+AGG | 0.515280 | 4_4:+74566472 | Msa0702780:exon |
| AAACAGAACGAGAGAATGGA+GGG | 0.517664 | 4_4:+74566467 | Msa0702780:exon |
| GAGAAGGGAACCGGTATTGA+CGG | 0.524006 | 4_4:+74568373 | Msa0702780:CDS |
| CTTTGGTTCATGCAGCTGCT+CGG | 0.524841 | 4_4:+74567181 | Msa0702780:CDS |
| TTGGTGCCTTAGCGATGGTA+AGG | 0.529609 | 4_4:+74567658 | Msa0702780:CDS |
| CTAAACAATAGACAAAAGCC+TGG | 0.535553 | 4_4:+74568346 | Msa0702780:CDS |
| AGCATAAAACTGCATTGGCT+CGG | 0.535889 | 4_4:+74571732 | Msa0702780:three_prime_UTR |
| GAAGAAGGAAAAGAAGTCGA+TGG | 0.536696 | 4_4:+74566496 | Msa0702780:CDS |
| ACAAAAGCCTGGCTGTGAGA+AGG | 0.542434 | 4_4:+74568357 | Msa0702780:CDS |
| CAACATTGAAGATTATGAAG+AGG | 0.549840 | 4_4:+74567366 | Msa0702780:CDS |
| TCAGCGGCTGCTAACAGATA+AGG | 0.565027 | 4_4:+74571636 | Msa0702780:three_prime_UTR |
| GAAGGAAAAGAAGTCGATGG+AGG | 0.566515 | 4_4:+74566499 | Msa0702780:CDS |
| TCTCTTTGGTGCCTTAGCGA+TGG | 0.574751 | 4_4:+74567653 | Msa0702780:CDS |
| AAAATACCTTACCATCGCTA+AGG | 0.592387 | 4_4:-74567664 | None:intergenic |
| AAAACAGAACGAGAGAATGG+AGG | 0.592760 | 4_4:+74566466 | Msa0702780:exon |
| AGAGCTGCAATTAAGTTCAG+AGG | 0.598621 | 4_4:+74567322 | Msa0702780:CDS |
| AATTAAGTTCAGAGGAGTCG+AGG | 0.627825 | 4_4:+74567330 | Msa0702780:CDS |
| ATAAGCAACAGTCCAAACAT+TGG | 0.634133 | 4_4:-74571794 | None:intergenic |
| GATGGAAAAGGATATTGATG+AGG | 0.655016 | 4_4:+74568166 | Msa0702780:intron |
| GGTTGGAAAGATTGCACATG+TGG | 0.657598 | 4_4:+74568187 | Msa0702780:CDS |
| CGGCTGCTAACAGATAAGGA+TGG | 0.682111 | 4_4:+74571640 | Msa0702780:three_prime_UTR |
| GAACTGAGCAGTTTCAACCC+CGG | 0.704213 | 4_4:-74571256 | None:intergenic |
| ATTGAAGCCATACCAATCAG+CGG | 0.704257 | 4_4:+74571620 | Msa0702780:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAGCATATAATAAATTTT+TGG | + | chr4_4:74567273-74567292 | Msa0702780:intron | 10.0% |
| !!! | TCCAATAAAAATTTTAATAT+CGG | - | chr4_4:74571331-74571350 | None:intergenic | 10.0% |
| !! | AATTATATATGAAAACATTA+TGG | + | chr4_4:74571382-74571401 | Msa0702780:intron | 10.0% |
| !! | TTCATTAAGAAATTGAAATT+GGG | - | chr4_4:74566626-74566645 | None:intergenic | 15.0% |
| !! | AATTTCAATTTCTTAATGAA+GGG | + | chr4_4:74566626-74566645 | Msa0702780:intron | 15.0% |
| !! | AAATTGAATGTAAAAATTGT+AGG | + | chr4_4:74567050-74567069 | Msa0702780:intron | 15.0% |
| !! | AATTGAATGTAAAAATTGTA+GGG | + | chr4_4:74567051-74567070 | Msa0702780:intron | 15.0% |
| !! | AAAAATATTCTCAACATTAA+AGG | - | chr4_4:74567143-74567162 | None:intergenic | 15.0% |
| !!! | TAATGTTGAGAATATTTTTT+CGG | + | chr4_4:74567144-74567163 | Msa0702780:intron | 15.0% |
| !!! | AAATTTCATTCATTCTTTTA+TGG | + | chr4_4:74567231-74567250 | Msa0702780:intron | 15.0% |
| !! | AATAATTGATTGAAAACTAT+AGG | - | chr4_4:74567455-74567474 | None:intergenic | 15.0% |
| !!! | ATCAATTATTACCTTTTTTT+TGG | + | chr4_4:74567465-74567484 | Msa0702780:intron | 15.0% |
| !! | TGTTATATAGATTTCAAATA+TGG | + | chr4_4:74568285-74568304 | Msa0702780:intron | 15.0% |
| !!! | TTTACATTGATTGATTTTAT+TGG | + | chr4_4:74569041-74569060 | Msa0702780:intron | 15.0% |
| !!! | TTACATTGATTGATTTTATT+GGG | + | chr4_4:74569042-74569061 | Msa0702780:intron | 15.0% |
| !!! | CATTTGCATTTTTTTTTAAA+GGG | - | chr4_4:74570066-74570085 | None:intergenic | 15.0% |
| !!! | CTTTAAAAAAAAATGCAAAT+GGG | + | chr4_4:74570065-74570084 | Msa0702780:intron | 15.0% |
| !! | TTTAAAAAAAAATGCAAATG+GGG | + | chr4_4:74570066-74570085 | Msa0702780:intron | 15.0% |
| !!! | GTTTTTTCTGATTATTTTAA+AGG | + | chr4_4:74570308-74570327 | Msa0702780:intron | 15.0% |
| !!! | TATTGTTTTCAAAGATAATT+TGG | + | chr4_4:74570541-74570560 | Msa0702780:intron | 15.0% |
| !!! | AATTTTAATATCGGTTAAAA+TGG | - | chr4_4:74571322-74571341 | None:intergenic | 15.0% |
| !!! | ACCGATATTAAAATTTTTAT+TGG | + | chr4_4:74571327-74571346 | Msa0702780:intron | 15.0% |
| !! | TCATTAAGAAATTGAAATTG+GGG | - | chr4_4:74566625-74566644 | None:intergenic | 20.0% |
| !! | CTTCATTAAGAAATTGAAAT+TGG | - | chr4_4:74566627-74566646 | None:intergenic | 20.0% |
| !! | CAATTTCAATTTCTTAATGA+AGG | + | chr4_4:74566625-74566644 | Msa0702780:intron | 20.0% |
| !! | AATTAAGCTTTCTTTGAATA+AGG | - | chr4_4:74566679-74566698 | None:intergenic | 20.0% |
| !!! | TGTAATTGTTTTATGATGAA+TGG | + | chr4_4:74567089-74567108 | Msa0702780:intron | 20.0% |
| !!! | AATGTTGAGAATATTTTTTC+GGG | + | chr4_4:74567145-74567164 | Msa0702780:intron | 20.0% |
| !! | AATTCAAGATACCAAAAAAA+AGG | - | chr4_4:74567479-74567498 | None:intergenic | 20.0% |
| !!! | AATTTTAACTTCAATGTGAA+TGG | + | chr4_4:74567863-74567882 | Msa0702780:intron | 20.0% |
| !! | ATGGATAAAAAATAGTTAAC+CGG | + | chr4_4:74568304-74568323 | Msa0702780:intron | 20.0% |
| !!! | ACTTTGTATATCATGAATTT+TGG | - | chr4_4:74568775-74568794 | None:intergenic | 20.0% |
| !! | AAGTTTACATTTCAAAATAC+AGG | - | chr4_4:74568879-74568898 | None:intergenic | 20.0% |
| !! | AGAATTTAATACATAGAGAA+GGG | - | chr4_4:74569232-74569251 | None:intergenic | 20.0% |
| !! | TAGAATTTAATACATAGAGA+AGG | - | chr4_4:74569233-74569252 | None:intergenic | 20.0% |
| !! | CTTCTGTTTAATAATTTCAA+GGG | + | chr4_4:74569411-74569430 | Msa0702780:intron | 20.0% |
| !!! | TTCTTTTTCATTTTCTGTTA+TGG | + | chr4_4:74569768-74569787 | Msa0702780:intron | 20.0% |
| !!! | CCATTTGCATTTTTTTTTAA+AGG | - | chr4_4:74570067-74570086 | None:intergenic | 20.0% |
| !!! | CCTTTAAAAAAAAATGCAAA+TGG | + | chr4_4:74570064-74570083 | Msa0702780:intron | 20.0% |
| !!! | TCTGAATAATTGTTTTTGAT+CGG | + | chr4_4:74570267-74570286 | Msa0702780:intron | 20.0% |
| !! | AAACATAGATTTACATTCAA+AGG | - | chr4_4:74570432-74570451 | None:intergenic | 20.0% |
| !!! | ATCATTCATGATTTTTATAG+TGG | + | chr4_4:74570497-74570516 | Msa0702780:intron | 20.0% |
| !!! | TTCATGATTTGATTTAGTTA+TGG | + | chr4_4:74570577-74570596 | Msa0702780:intron | 20.0% |
| !! | ATAATGAATTACTACCTAAA+TGG | - | chr4_4:74570665-74570684 | None:intergenic | 20.0% |
| !! | ATATTTCACATATTATACTC+TGG | - | chr4_4:74570963-74570982 | None:intergenic | 20.0% |
| !!! | AGTTTTGAGTTTAGTTTTAT+TGG | + | chr4_4:74571145-74571164 | Msa0702780:intron | 20.0% |
| !!! | ATTGATCCATTTTCTTTAAT+AGG | + | chr4_4:74571199-74571218 | Msa0702780:intron | 20.0% |
| !! | TGTAAACCTATTAAAGAAAA+TGG | - | chr4_4:74571208-74571227 | None:intergenic | 20.0% |
| !! | TAGTATAACAATCTGTTATT+TGG | + | chr4_4:74571405-74571424 | Msa0702780:intron | 20.0% |
| ! | GTTTGGATGAAATTGAAATT+GGG | - | chr4_4:74566587-74566606 | None:intergenic | 25.0% |
| ! | AGAAAGCTTAATTGAAAGTA+TGG | + | chr4_4:74566686-74566705 | Msa0702780:intron | 25.0% |
| !! | GAAAGCTTAATTGAAAGTAT+GGG | + | chr4_4:74566687-74566706 | Msa0702780:intron | 25.0% |
| !! | AAAGCTTAATTGAAAGTATG+GGG | + | chr4_4:74566688-74566707 | Msa0702780:intron | 25.0% |
| ! | AAAAAGCTATTTGACAATAC+TGG | - | chr4_4:74566876-74566895 | None:intergenic | 25.0% |
| ! | TATGATAATTTCATCCCATA+AGG | + | chr4_4:74567003-74567022 | Msa0702780:intron | 25.0% |
| ! | TTACATAGAACATACCTTAT+GGG | - | chr4_4:74567020-74567039 | None:intergenic | 25.0% |
| ! | TTTACATAGAACATACCTTA+TGG | - | chr4_4:74567021-74567040 | None:intergenic | 25.0% |
| !! | TCTGAAAATCAATTTGTTTC+AGG | + | chr4_4:74567112-74567131 | Msa0702780:intron | 25.0% |
| !!! | ATGTTGAGAATATTTTTTCG+GGG | + | chr4_4:74567146-74567165 | Msa0702780:intron | 25.0% |
| ! | TGTTGTGATTTAAATGAGTT+TGG | + | chr4_4:74567498-74567517 | Msa0702780:intron | 25.0% |
| !! | TAATGCTCATAAGATTTTAC+TGG | + | chr4_4:74568112-74568131 | Msa0702780:intron | 25.0% |
| ! | TGGATAAAAAATAGTTAACC+GGG | + | chr4_4:74568305-74568324 | Msa0702780:intron | 25.0% |
| !!! | GAAAAACAACTTCTAGTTTT+AGG | - | chr4_4:74568564-74568583 | None:intergenic | 25.0% |
| ! | AACACAGTTAACTTTATCAA+GGG | - | chr4_4:74568703-74568722 | None:intergenic | 25.0% |
| ! | TAAAATTCATGATATGCACA+AGG | + | chr4_4:74568824-74568843 | Msa0702780:intron | 25.0% |
| !! | TGAAATGTAAACTTTGAGAA+AGG | + | chr4_4:74568885-74568904 | Msa0702780:intron | 25.0% |
| !! | AAGGTTTGAACATGTAATTT+TGG | + | chr4_4:74569003-74569022 | Msa0702780:intron | 25.0% |
| ! | AGTAGAAGTTCGATAAATAA+TGG | + | chr4_4:74569144-74569163 | Msa0702780:intron | 25.0% |
| ! | GCTTCTGTTTAATAATTTCA+AGG | + | chr4_4:74569410-74569429 | Msa0702780:intron | 25.0% |
| ! | TTTAATAATTTCAAGGGATG+TGG | + | chr4_4:74569417-74569436 | Msa0702780:intron | 25.0% |
| ! | GAAACAAAAGACTCAAAAAA+CGG | - | chr4_4:74570198-74570217 | None:intergenic | 25.0% |
| !!! | AAAGGTTTGATTTTCCTTTT+TGG | + | chr4_4:74570326-74570345 | Msa0702780:intron | 25.0% |
| ! | AGCAAAAAAACAAACCAAAA+AGG | - | chr4_4:74570343-74570362 | None:intergenic | 25.0% |
| !!! | ATGATTTTTATAGTGGACAA+AGG | + | chr4_4:74570504-74570523 | Msa0702780:intron | 25.0% |
| ! | TAAATCAAATCATGAAACCA+AGG | - | chr4_4:74570573-74570592 | None:intergenic | 25.0% |
| ! | AAAAATGTAATCAGCCATTT+AGG | + | chr4_4:74570648-74570667 | Msa0702780:intron | 25.0% |
| ! | ATCTCTAATGTGTATCTATT+CGG | - | chr4_4:74570718-74570737 | None:intergenic | 25.0% |
| ! | CAATGACTTAAAAGATGTTT+AGG | + | chr4_4:74570937-74570956 | Msa0702780:intron | 25.0% |
| !! | CTTTAATAGGTTTACACTTT+TGG | + | chr4_4:74571212-74571231 | Msa0702780:intron | 25.0% |
| !! | TGTTATTTGGCATTGTAATA+TGG | + | chr4_4:74571418-74571437 | Msa0702780:intron | 25.0% |
| ! | AGACAATAATACTTCCTTTA+AGG | + | chr4_4:74571443-74571462 | Msa0702780:intron | 25.0% |
| ! | GACAATAATACTTCCTTTAA+GGG | + | chr4_4:74571444-74571463 | Msa0702780:intron | 25.0% |
| GGTTTGGATGAAATTGAAAT+TGG | - | chr4_4:74566588-74566607 | None:intergenic | 30.0% | |
| ! | AAGCTTAATTGAAAGTATGG+GGG | + | chr4_4:74566689-74566708 | Msa0702780:intron | 30.0% |
| TCATTTCTGTTTGATCTGAA+TGG | + | chr4_4:74566779-74566798 | Msa0702780:intron | 30.0% | |
| AGATCAGATACAAAGGAAAA+TGG | - | chr4_4:74566841-74566860 | None:intergenic | 30.0% | |
| ! | ATTTTCCTTTGTATCTGATC+TGG | + | chr4_4:74566840-74566859 | Msa0702780:intron | 30.0% |
| ! | TTTTACCAGATCAGATACAA+AGG | - | chr4_4:74566848-74566867 | None:intergenic | 30.0% |
| TATTCTCAACATTAAAGGAC+AGG | - | chr4_4:74567138-74567157 | None:intergenic | 30.0% | |
| !!! | TGTTGAGAATATTTTTTCGG+GGG | + | chr4_4:74567147-74567166 | Msa0702780:intron | 30.0% |
| CAACATTGAAGATTATGAAG+AGG | + | chr4_4:74567366-74567385 | Msa0702780:CDS | 30.0% | |
| TGTGATTTAAATGAGTTTGG+AGG | + | chr4_4:74567501-74567520 | Msa0702780:intron | 30.0% | |
| AGTTTGGAGGAATTAATTTC+AGG | + | chr4_4:74567514-74567533 | Msa0702780:intron | 30.0% | |
| !!! | CAACTCTTTCAAGTTTTTCA+TGG | + | chr4_4:74567568-74567587 | Msa0702780:CDS | 30.0% |
| ! | AAGTTTTTCATGGCATACAA+AGG | + | chr4_4:74567578-74567597 | Msa0702780:CDS | 30.0% |
| !!! | GGCATACAAAGGATTTTTTA+TGG | + | chr4_4:74567589-74567608 | Msa0702780:CDS | 30.0% |
| !! | TAGTTCTGATTATTGTGATC+TGG | + | chr4_4:74567743-74567762 | Msa0702780:intron | 30.0% |
| ! | TCATAAGATTTTACTGGTAC+TGG | + | chr4_4:74568118-74568137 | Msa0702780:intron | 30.0% |
| CTGAATCATAACAATTGTCT+TGG | + | chr4_4:74568144-74568163 | Msa0702780:intron | 30.0% | |
| ATCATAACAATTGTCTTGGA+TGG | + | chr4_4:74568148-74568167 | Msa0702780:intron | 30.0% | |
| ATTCTGCATAAAACATATCC+CGG | - | chr4_4:74568326-74568345 | None:intergenic | 30.0% | |
| AGTTCCTTGACTAAAAAGTT+CGG | + | chr4_4:74568500-74568519 | Msa0702780:intron | 30.0% | |
| TGAGAAGATAGACATAAACT+TGG | - | chr4_4:74568586-74568605 | None:intergenic | 30.0% | |
| AATACAAGATGAATATCGTG+AGG | + | chr4_4:74568637-74568656 | Msa0702780:intron | 30.0% | |
| ACACAGTTAACTTTATCAAG+GGG | - | chr4_4:74568702-74568721 | None:intergenic | 30.0% | |
| CAACACAGTTAACTTTATCA+AGG | - | chr4_4:74568704-74568723 | None:intergenic | 30.0% | |
| ! | GTAGTACTTTAGAAATTTGC+TGG | + | chr4_4:74568731-74568750 | Msa0702780:intron | 30.0% |
| CATTTCAAAATACAGGCAAA+TGG | - | chr4_4:74568872-74568891 | None:intergenic | 30.0% | |
| ! | AATGAAAGTTGAGATCCTTT+TGG | + | chr4_4:74568910-74568929 | Msa0702780:intron | 30.0% |
| ATCTACTTTGATATGACTCA+TGG | + | chr4_4:74568957-74568976 | Msa0702780:intron | 30.0% | |
| ATTACATGTTCAAACCTTTG+TGG | - | chr4_4:74569001-74569020 | None:intergenic | 30.0% | |
| TGCACTTAGTAACAACAAAA+GGG | - | chr4_4:74569079-74569098 | None:intergenic | 30.0% | |
| !! | CAAAGTATATTGATGATGAG+TGG | + | chr4_4:74569169-74569188 | Msa0702780:intron | 30.0% |
| TTCTAAACACCCAAACAAAT+AGG | + | chr4_4:74569204-74569223 | Msa0702780:intron | 30.0% | |
| GTTTCAGTTACTTGCATAAT+AGG | + | chr4_4:74569320-74569339 | Msa0702780:intron | 30.0% | |
| !! | TTTGTGATTAGTTTGAGCTA+TGG | + | chr4_4:74569853-74569872 | Msa0702780:intron | 30.0% |
| !!! | TTTAGCTTTTGCTTCTGTTA+TGG | + | chr4_4:74569951-74569970 | Msa0702780:intron | 30.0% |
| !! | TTAGCTTTTGCTTCTGTTAT+GGG | + | chr4_4:74569952-74569971 | Msa0702780:intron | 30.0% |
| ACCATTGATAAGCTAGAAAA+CGG | - | chr4_4:74570119-74570138 | None:intergenic | 30.0% | |
| !!! | TTTTTGATCGGTGTTGATAT+TGG | + | chr4_4:74570279-74570298 | Msa0702780:intron | 30.0% |
| !!! | GTTTGTTTTTTTGCTGATTC+TGG | + | chr4_4:74570348-74570367 | Msa0702780:intron | 30.0% |
| AGATAATTTGGATCATACCT+TGG | + | chr4_4:74570553-74570572 | Msa0702780:intron | 30.0% | |
| !! | GAATAACCAACCACTTTTAT+TGG | - | chr4_4:74570618-74570637 | None:intergenic | 30.0% |
| ! | ATTAGAGATTCATGTCGATT+GGG | + | chr4_4:74570729-74570748 | Msa0702780:intron | 30.0% |
| ATTTAATGTGTCTGATACTC+TGG | - | chr4_4:74570991-74571010 | None:intergenic | 30.0% | |
| !!! | GTTTGTTTTTGCGCAATTTT+TGG | + | chr4_4:74571036-74571055 | Msa0702780:intron | 30.0% |
| ! | TTTGGTTTATGATGTTGACT+TGG | + | chr4_4:74571054-74571073 | Msa0702780:intron | 30.0% |
| !! | TTGGTTTATGATGTTGACTT+GGG | + | chr4_4:74571055-74571074 | Msa0702780:intron | 30.0% |
| ATAGTACATGACAACAACAT+AGG | - | chr4_4:74571115-74571134 | None:intergenic | 30.0% | |
| AACTGTCTATTGTTGCTATA+AGG | - | chr4_4:74571517-74571536 | None:intergenic | 30.0% | |
| AGAAAAACAGAACGAGAGAA+TGG | + | chr4_4:74566463-74566482 | Msa0702780:exon | 35.0% | |
| ! | GAAGGCAAGCTTCAATTTTA+AGG | + | chr4_4:74566541-74566560 | Msa0702780:CDS | 35.0% |
| TGAAATTGGGCTGATAGAAA+GGG | - | chr4_4:74566574-74566593 | None:intergenic | 35.0% | |
| TTGAAATTGGGCTGATAGAA+AGG | - | chr4_4:74566575-74566594 | None:intergenic | 35.0% | |
| ATTGAAATTGGGGCTGAAAA+GGG | - | chr4_4:74566615-74566634 | None:intergenic | 35.0% | |
| AATTGAAATTGGGGCTGAAA+AGG | - | chr4_4:74566616-74566635 | None:intergenic | 35.0% | |
| ! | TTAATTGAAAGTATGGGGGT+TGG | + | chr4_4:74566693-74566712 | Msa0702780:intron | 35.0% |
| ! | TAATTGAAAGTATGGGGGTT+GGG | + | chr4_4:74566694-74566713 | Msa0702780:intron | 35.0% |
| GAGGAAGAAACAAGAAGAAT+TGG | + | chr4_4:74566727-74566746 | Msa0702780:intron | 35.0% | |
| ! | TTATGAAGAGGATTTGAAGC+AGG | + | chr4_4:74567378-74567397 | Msa0702780:CDS | 35.0% |
| ! | ATTTGAAGCAGGTGAGTTAT+GGG | + | chr4_4:74567389-74567408 | Msa0702780:intron | 35.0% |
| CGTCTATGTTTCTTAATCTC+AGG | + | chr4_4:74567542-74567561 | Msa0702780:CDS | 35.0% | |
| AAAATACCTTACCATCGCTA+AGG | - | chr4_4:74567667-74567686 | None:intergenic | 35.0% | |
| ! | CAAGTTTCAGTATTTTCGCA+TGG | + | chr4_4:74567945-74567964 | Msa0702780:intron | 35.0% |
| CGCATGGAGTATAAGAAAAT+TGG | + | chr4_4:74567961-74567980 | Msa0702780:intron | 35.0% | |
| ! | ATAGCAATAGCAATTTTCGC+AGG | + | chr4_4:74567988-74568007 | Msa0702780:intron | 35.0% |
| !! | ACAAAAGCATTTGCCATGAA+AGG | + | chr4_4:74568037-74568056 | Msa0702780:intron | 35.0% |
| CCTTGTAACAATACCTTTCA+TGG | - | chr4_4:74568053-74568072 | None:intergenic | 35.0% | |
| !! | CCATGAAAGGTATTGTTACA+AGG | + | chr4_4:74568050-74568069 | Msa0702780:intron | 35.0% |
| ! | GGCAATGTCTGTAATTCTTT+TGG | + | chr4_4:74568071-74568090 | Msa0702780:intron | 35.0% |
| ACAATTGTCTTGGATGGAAA+AGG | + | chr4_4:74568154-74568173 | Msa0702780:intron | 35.0% | |
| GATGGAAAAGGATATTGATG+AGG | + | chr4_4:74568166-74568185 | Msa0702780:intron | 35.0% | |
| GAAAAGGATATTGATGAGGT+TGG | + | chr4_4:74568170-74568189 | Msa0702780:intron | 35.0% | |
| CTAAACAATAGACAAAAGCC+TGG | + | chr4_4:74568346-74568365 | Msa0702780:CDS | 35.0% | |
| GTTCCTTGACTAAAAAGTTC+GGG | + | chr4_4:74568501-74568520 | Msa0702780:intron | 35.0% | |
| TTCCTTGACTAAAAAGTTCG+GGG | + | chr4_4:74568502-74568521 | Msa0702780:intron | 35.0% | |
| AAGTTAACTGTGTTGCACTA+CGG | + | chr4_4:74568709-74568728 | Msa0702780:intron | 35.0% | |
| ! | CATGGAATGAGATAGCTTTT+TGG | + | chr4_4:74568975-74568994 | Msa0702780:intron | 35.0% |
| CTGCACTTAGTAACAACAAA+AGG | - | chr4_4:74569080-74569099 | None:intergenic | 35.0% | |
| !!! | CTTTTGTTGTTACTAAGTGC+AGG | + | chr4_4:74569078-74569097 | Msa0702780:intron | 35.0% |
| AGAAGGGATCCTATTTGTTT+GGG | - | chr4_4:74569216-74569235 | None:intergenic | 35.0% | |
| ! | ATGATATCAACGTTTTGTCG+TGG | + | chr4_4:74569507-74569526 | Msa0702780:intron | 35.0% |
| ! | GTCTGTTTTACTAATGGTGT+TGG | + | chr4_4:74569564-74569583 | Msa0702780:intron | 35.0% |
| ACAGCAAAAAACATTCCCTA+GGG | - | chr4_4:74569592-74569611 | None:intergenic | 35.0% | |
| AACAGCAAAAAACATTCCCT+AGG | - | chr4_4:74569593-74569612 | None:intergenic | 35.0% | |
| !!! | TAGGGAATGTTTTTTGCTGT+TGG | + | chr4_4:74569592-74569611 | Msa0702780:intron | 35.0% |
| !! | CTGTTGGTTTAACTGTTTAG+AGG | + | chr4_4:74569608-74569627 | Msa0702780:intron | 35.0% |
| TTAACTGTTTAGAGGTTGTC+TGG | + | chr4_4:74569616-74569635 | Msa0702780:intron | 35.0% | |
| ! | TCATTTTCTGTTATGGACTC+TGG | + | chr4_4:74569775-74569794 | Msa0702780:intron | 35.0% |
| ! | CATTTTCTGTTATGGACTCT+GGG | + | chr4_4:74569776-74569795 | Msa0702780:intron | 35.0% |
| ! | TTTTGCTTCTGTTATGGGTT+GGG | + | chr4_4:74569957-74569976 | Msa0702780:intron | 35.0% |
| ! | GGACGAAAGAAAAGTACAAT+AGG | - | chr4_4:74570003-74570022 | None:intergenic | 35.0% |
| !!! | TCCGTTTTCTAGCTTATCAA+TGG | + | chr4_4:74570115-74570134 | Msa0702780:intron | 35.0% |
| !!! | TTTCTCTGTTTCTGCGATTT+TGG | + | chr4_4:74570214-74570233 | Msa0702780:intron | 35.0% |
| TTGGCGATAGATTTCATGTT+AGG | + | chr4_4:74570233-74570252 | Msa0702780:intron | 35.0% | |
| TGGCGATAGATTTCATGTTA+GGG | + | chr4_4:74570234-74570253 | Msa0702780:intron | 35.0% | |
| ACATTCAAAGGACTCAAGTT+AGG | - | chr4_4:74570420-74570439 | None:intergenic | 35.0% | |
| TGTAACACTGCCAATAAAAG+TGG | + | chr4_4:74570605-74570624 | Msa0702780:intron | 35.0% | |
| CATTAGAGATTCATGTCGAT+TGG | + | chr4_4:74570728-74570747 | Msa0702780:intron | 35.0% | |
| CTTGATATATTGCAGATGCA+TGG | + | chr4_4:74570808-74570827 | Msa0702780:intron | 35.0% | |
| AAGATGAGAACAACTCAACT+GGG | + | chr4_4:74570840-74570859 | Msa0702780:intron | 35.0% | |
| !! | CATTGATGGACTTGAGATAT+GGG | + | chr4_4:74570895-74570914 | Msa0702780:intron | 35.0% |
| TATGGGTTTCCATCAAATCA+TGG | + | chr4_4:74570912-74570931 | Msa0702780:intron | 35.0% | |
| ATGGGTTTCCATCAAATCAT+GGG | + | chr4_4:74570913-74570932 | Msa0702780:intron | 35.0% | |
| TGCGCAAAAACAAACAAACA+TGG | - | chr4_4:74571031-74571050 | None:intergenic | 35.0% | |
| ! | ATACTTCCTTTAAGGGAGAA+AGG | + | chr4_4:74571451-74571470 | Msa0702780:intron | 35.0% |
| GTATTGTTCTACCAGAGATA+TGG | + | chr4_4:74571549-74571568 | Msa0702780:intron | 35.0% | |
| AATGTCTTGCTTTACACTTC+AGG | + | chr4_4:74571592-74571611 | Msa0702780:intron | 35.0% | |
| !! | TGCAGTTTTATGCTATGCAA+AGG | - | chr4_4:74571726-74571745 | None:intergenic | 35.0% |
| TGCATAGCATAAAACTGCAT+TGG | + | chr4_4:74571727-74571746 | Msa0702780:three_prime_UTR | 35.0% | |
| ATAAGCAACAGTCCAAACAT+TGG | - | chr4_4:74571797-74571816 | None:intergenic | 35.0% | |
| AAAACAGAACGAGAGAATGG+AGG | + | chr4_4:74566466-74566485 | Msa0702780:exon | 40.0% | |
| AAACAGAACGAGAGAATGGA+GGG | + | chr4_4:74566467-74566486 | Msa0702780:exon | 40.0% | |
| GAAGAAGGAAAAGAAGTCGA+TGG | + | chr4_4:74566496-74566515 | Msa0702780:CDS | 40.0% | |
| AGAAGGGAAATTGGAGAAGA+AGG | + | chr4_4:74566523-74566542 | Msa0702780:CDS | 40.0% | |
| ! | TTGATCTGAATGGTGCTGAA+TGG | + | chr4_4:74566789-74566808 | Msa0702780:intron | 40.0% |
| AGAGCTGCAATTAAGTTCAG+AGG | + | chr4_4:74567322-74567341 | Msa0702780:CDS | 40.0% | |
| AATTAAGTTCAGAGGAGTCG+AGG | + | chr4_4:74567330-74567349 | Msa0702780:CDS | 40.0% | |
| ! | GATTTGAAGCAGGTGAGTTA+TGG | + | chr4_4:74567388-74567407 | Msa0702780:intron | 40.0% |
| ! | TTTGAAGCAGGTGAGTTATG+GGG | + | chr4_4:74567390-74567409 | Msa0702780:intron | 40.0% |
| ! | TTAAGAAGCGCAAGTCTCTT+TGG | + | chr4_4:74567639-74567658 | Msa0702780:CDS | 40.0% |
| ! | ATTTTCGCAGGAAGCTAATG+AGG | + | chr4_4:74568000-74568019 | Msa0702780:intron | 40.0% |
| GTCAAGGAACTGCAATTTCA+AGG | - | chr4_4:74568491-74568510 | None:intergenic | 40.0% | |
| !! | ATCCCCGAACTTTTTAGTCA+AGG | - | chr4_4:74568507-74568526 | None:intergenic | 40.0% |
| GTGTTTCAGAACAACATACC+TGG | - | chr4_4:74568542-74568561 | None:intergenic | 40.0% | |
| AGATGAATATCGTGAGGTTG+TGG | + | chr4_4:74568643-74568662 | Msa0702780:intron | 40.0% | |
| GTGGAGAGAAGAGTTATTAC+AGG | + | chr4_4:74568662-74568681 | Msa0702780:intron | 40.0% | |
| GCAGAATAAGTGTGACCAAA+AGG | - | chr4_4:74568928-74568947 | None:intergenic | 40.0% | |
| !! | AGATAGCTTTTTGGCCACAA+AGG | + | chr4_4:74568984-74569003 | Msa0702780:intron | 40.0% |
| !! | ATTGATGATGAGTGGTGAAG+AGG | + | chr4_4:74569177-74569196 | Msa0702780:intron | 40.0% |
| GAGAAGGGATCCTATTTGTT+TGG | - | chr4_4:74569217-74569236 | None:intergenic | 40.0% | |
| ! | TCTTTTCCAAGCTGAGATCA+AGG | + | chr4_4:74569376-74569395 | Msa0702780:intron | 40.0% |
| ! | CTTTTCCAAGCTGAGATCAA+GGG | + | chr4_4:74569377-74569396 | Msa0702780:intron | 40.0% |
| TTATTCCCTTGATCTCAGCT+TGG | - | chr4_4:74569385-74569404 | None:intergenic | 40.0% | |
| AGTGTTTAATAGCCACAACC+CGG | + | chr4_4:74569466-74569485 | Msa0702780:intron | 40.0% | |
| TCCACAATTTAGTCGAGATC+CGG | - | chr4_4:74569488-74569507 | None:intergenic | 40.0% | |
| CATTAGTAAAACAGACGCAG+AGG | - | chr4_4:74569560-74569579 | None:intergenic | 40.0% | |
| ! | CTCTGCGTCTGTTTTACTAA+TGG | + | chr4_4:74569558-74569577 | Msa0702780:intron | 40.0% |
| GAAAAACAGCTGCTGCTAAT+TGG | - | chr4_4:74569672-74569691 | None:intergenic | 40.0% | |
| GTGTATTTGAGGGTGGTTTA+TGG | + | chr4_4:74569798-74569817 | Msa0702780:intron | 40.0% | |
| TATTTGAGGGTGGTTTATGG+AGG | + | chr4_4:74569801-74569820 | Msa0702780:intron | 40.0% | |
| TTAGGGTCTTTCGGTTGTTT+GGG | + | chr4_4:74569826-74569845 | Msa0702780:intron | 40.0% | |
| !! | TGCACATAACTTGCTTCTGT+CGG | + | chr4_4:74569910-74569929 | Msa0702780:intron | 40.0% |
| !! | AACTTGCTTCTGTCGGATTT+TGG | + | chr4_4:74569917-74569936 | Msa0702780:intron | 40.0% |
| ! | ACTTGCTTCTGTCGGATTTT+GGG | + | chr4_4:74569918-74569937 | Msa0702780:intron | 40.0% |
| ! | CTTTTGCTTCTGTTATGGGT+TGG | + | chr4_4:74569956-74569975 | Msa0702780:intron | 40.0% |
| GGCGATAGATTTCATGTTAG+GGG | + | chr4_4:74570235-74570254 | Msa0702780:intron | 40.0% | |
| ! | GCTGATTCTGGTCTGTTATT+TGG | + | chr4_4:74570360-74570379 | Msa0702780:intron | 40.0% |
| TCAAAGGACTCAAGTTAGGT+TGG | - | chr4_4:74570416-74570435 | None:intergenic | 40.0% | |
| ACACTGCCAATAAAAGTGGT+TGG | + | chr4_4:74570609-74570628 | Msa0702780:intron | 40.0% | |
| ! | CAGTTGAGTTGTTCTCATCT+TGG | - | chr4_4:74570841-74570860 | None:intergenic | 40.0% |
| CAAGATGAGAACAACTCAAC+TGG | + | chr4_4:74570839-74570858 | Msa0702780:intron | 40.0% | |
| CCATATCTCAAGTCCATCAA+TGG | - | chr4_4:74570897-74570916 | None:intergenic | 40.0% | |
| !! | CCATTGATGGACTTGAGATA+TGG | + | chr4_4:74570894-74570913 | Msa0702780:intron | 40.0% |
| GTCATTGACCCATGATTTGA+TGG | - | chr4_4:74570924-74570943 | None:intergenic | 40.0% | |
| !! | TTATGATGTTGACTTGGGAC+AGG | + | chr4_4:74571060-74571079 | Msa0702780:intron | 40.0% |
| ! | GGTTCTCTTTTATCTTGCCA+TGG | + | chr4_4:74571233-74571252 | Msa0702780:CDS | 40.0% |
| TCAGTTCCTTTCTCCCTTAA+AGG | - | chr4_4:74571460-74571479 | None:intergenic | 40.0% | |
| TTCTACCAGAGATATGGTCA+TGG | + | chr4_4:74571555-74571574 | Msa0702780:intron | 40.0% | |
| TATGACCATGACCATATCTC+TGG | - | chr4_4:74571563-74571582 | None:intergenic | 40.0% | |
| ATTGAAGCCATACCAATCAG+CGG | + | chr4_4:74571620-74571639 | Msa0702780:three_prime_UTR | 40.0% | |
| !! | AGCATAAAACTGCATTGGCT+CGG | + | chr4_4:74571732-74571751 | Msa0702780:three_prime_UTR | 40.0% |
| ! | CTGTACAAAGTGCCAATGTT+TGG | + | chr4_4:74571782-74571801 | Msa0702780:three_prime_UTR | 40.0% |
| GAAGGAAAAGAAGTCGATGG+AGG | + | chr4_4:74566499-74566518 | Msa0702780:CDS | 45.0% | |
| AAGAAGTCGATGGAGGAAGA+AGG | + | chr4_4:74566506-74566525 | Msa0702780:CDS | 45.0% | |
| AGAAGTCGATGGAGGAAGAA+GGG | + | chr4_4:74566507-74566526 | Msa0702780:CDS | 45.0% | |
| GATGGAGGAAGAAGGGAAAT+TGG | + | chr4_4:74566514-74566533 | Msa0702780:CDS | 45.0% | |
| ATTGGGGCTGAAAAGGGTTA+GGG | - | chr4_4:74566609-74566628 | None:intergenic | 45.0% | |
| AATTGGGGCTGAAAAGGGTT+AGG | - | chr4_4:74566610-74566629 | None:intergenic | 45.0% | |
| GGTTGGAAAGATTGCACATG+TGG | + | chr4_4:74568187-74568206 | Msa0702780:CDS | 45.0% | |
| CATTCTTGCTCCGTCAATAC+CGG | - | chr4_4:74568386-74568405 | None:intergenic | 45.0% | |
| !! | TGTGGATGTTGTGACTTGCT+AGG | + | chr4_4:74569435-74569454 | Msa0702780:intron | 45.0% |
| CCACAATTTAGTCGAGATCC+GGG | - | chr4_4:74569487-74569506 | None:intergenic | 45.0% | |
| TTTAGAGGTTGTCTGGCGTA+AGG | + | chr4_4:74569623-74569642 | Msa0702780:intron | 45.0% | |
| TTAGAGGTTGTCTGGCGTAA+GGG | + | chr4_4:74569624-74569643 | Msa0702780:intron | 45.0% | |
| ACAACAACACAACAGGTCCA+CGG | - | chr4_4:74569708-74569727 | None:intergenic | 45.0% | |
| TACGGACACAACAACACAAC+AGG | - | chr4_4:74569715-74569734 | None:intergenic | 45.0% | |
| ATGGACTCTGGGTGTATTTG+AGG | + | chr4_4:74569787-74569806 | Msa0702780:intron | 45.0% | |
| TGGACTCTGGGTGTATTTGA+GGG | + | chr4_4:74569788-74569807 | Msa0702780:intron | 45.0% | |
| GGTGGTTTATGGAGGTCTTA+GGG | + | chr4_4:74569809-74569828 | Msa0702780:intron | 45.0% | |
| ATGGAGGTCTTAGGGTCTTT+CGG | + | chr4_4:74569817-74569836 | Msa0702780:intron | 45.0% | |
| CTTAGGGTCTTTCGGTTGTT+TGG | + | chr4_4:74569825-74569844 | Msa0702780:intron | 45.0% | |
| ! | CTTGCTTCTGTCGGATTTTG+GGG | + | chr4_4:74569919-74569938 | Msa0702780:intron | 45.0% |
| ! | TTGCTTCTGTCGGATTTTGG+GGG | + | chr4_4:74569920-74569939 | Msa0702780:intron | 45.0% |
| TTGGGTGTACCGTCTATATG+CGG | + | chr4_4:74569975-74569994 | Msa0702780:intron | 45.0% | |
| ! | CAATAGGTGCCGCATATAGA+CGG | - | chr4_4:74569987-74570006 | None:intergenic | 45.0% |
| TGGGACTCAACATCTCATGT+TGG | + | chr4_4:74570859-74570878 | Msa0702780:intron | 45.0% | |
| TCTCATGTTGGACTCTCCAA+AGG | + | chr4_4:74570871-74570890 | Msa0702780:intron | 45.0% | |
| TCAAGTCCATCAATGGCCTT+TGG | - | chr4_4:74570890-74570909 | None:intergenic | 45.0% | |
| ! | CTCTTTTATCTTGCCATGGC+CGG | + | chr4_4:74571237-74571256 | Msa0702780:CDS | 45.0% |
| ! | TCTTTTATCTTGCCATGGCC+GGG | + | chr4_4:74571238-74571257 | Msa0702780:CDS | 45.0% |
| AATGGAGGGAGAGGAGAAGA+AGG | + | chr4_4:74566481-74566500 | Msa0702780:exon | 50.0% | |
| GGCTGAAAAGGGTTAGGGTT+TGG | - | chr4_4:74566604-74566623 | None:intergenic | 50.0% | |
| ATGGGGGTTGGGTTTGCAAT+TGG | + | chr4_4:74566705-74566724 | Msa0702780:intron | 50.0% | |
| CGGGGGTTATCAGTACTCTT+TGG | + | chr4_4:74567164-74567183 | Msa0702780:intron | 50.0% | |
| ! | CTTTGGTTCATGCAGCTGCT+CGG | + | chr4_4:74567181-74567200 | Msa0702780:CDS | 50.0% |
| !! | TCTCTTTGGTGCCTTAGCGA+TGG | + | chr4_4:74567653-74567672 | Msa0702780:CDS | 50.0% |
| ! | TTGGTGCCTTAGCGATGGTA+AGG | + | chr4_4:74567658-74567677 | Msa0702780:CDS | 50.0% |
| ACAAAAGCCTGGCTGTGAGA+AGG | + | chr4_4:74568357-74568376 | Msa0702780:CDS | 50.0% | |
| CAAAAGCCTGGCTGTGAGAA+GGG | + | chr4_4:74568358-74568377 | Msa0702780:CDS | 50.0% | |
| ! | GAGAAGGGAACCGGTATTGA+CGG | + | chr4_4:74568373-74568392 | Msa0702780:CDS | 50.0% |
| TTTAGTCGAGATCCGGGTTG+TGG | - | chr4_4:74569481-74569500 | None:intergenic | 50.0% | |
| CCCGGATCTCGACTAAATTG+TGG | + | chr4_4:74569484-74569503 | Msa0702780:intron | 50.0% | |
| ! | TCAACGTTTTGTCGTGGCGA+TGG | + | chr4_4:74569513-74569532 | Msa0702780:intron | 50.0% |
| TTTGTCGTGGCGATGGTCTT+TGG | + | chr4_4:74569520-74569539 | Msa0702780:intron | 50.0% | |
| !! | ACTAATGGTGTTGGTGCCCT+AGG | + | chr4_4:74569573-74569592 | Msa0702780:intron | 50.0% |
| !! | CTAATGGTGTTGGTGCCCTA+GGG | + | chr4_4:74569574-74569593 | Msa0702780:intron | 50.0% |
| TTGTGTCCGTATAGCTGCTG+AGG | + | chr4_4:74569724-74569743 | Msa0702780:intron | 50.0% | |
| TGTGTCCGTATAGCTGCTGA+GGG | + | chr4_4:74569725-74569744 | Msa0702780:intron | 50.0% | |
| ACTCTGGGTGTATTTGAGGG+TGG | + | chr4_4:74569791-74569810 | Msa0702780:intron | 50.0% | |
| GGGTGGTTTATGGAGGTCTT+AGG | + | chr4_4:74569808-74569827 | Msa0702780:intron | 50.0% | |
| !! | TCTGTCGGATTTTGGGGGTT+TGG | + | chr4_4:74569925-74569944 | Msa0702780:intron | 50.0% |
| TCCATTCCTTGTGTCTTGCG+AGG | + | chr4_4:74570020-74570039 | Msa0702780:intron | 50.0% | |
| CCATTCCTTGTGTCTTGCGA+GGG | + | chr4_4:74570021-74570040 | Msa0702780:intron | 50.0% | |
| GACTCTCCAAAGGCCATTGA+TGG | + | chr4_4:74570881-74570900 | Msa0702780:intron | 50.0% | |
| ! | CTTTTATCTTGCCATGGCCG+GGG | + | chr4_4:74571239-74571258 | Msa0702780:CDS | 50.0% |
| GAACTGAGCAGTTTCAACCC+CGG | - | chr4_4:74571259-74571278 | None:intergenic | 50.0% | |
| GGGTTGAAACTGCTCAGTTC+AGG | + | chr4_4:74571259-74571278 | Msa0702780:CDS | 50.0% | |
| ! | TTAGCAGCCGCTGATTGGTA+TGG | - | chr4_4:74571630-74571649 | None:intergenic | 50.0% |
| ATCTGTTAGCAGCCGCTGAT+TGG | - | chr4_4:74571635-74571654 | None:intergenic | 50.0% | |
| TCAGCGGCTGCTAACAGATA+AGG | + | chr4_4:74571636-74571655 | Msa0702780:three_prime_UTR | 50.0% | |
| CGGCTGCTAACAGATAAGGA+TGG | + | chr4_4:74571640-74571659 | Msa0702780:three_prime_UTR | 50.0% | |
| GAACGAGAGAATGGAGGGAG+AGG | + | chr4_4:74566472-74566491 | Msa0702780:exon | 55.0% | |
| GGGGTTGGGTTTGCAATTGG+AGG | + | chr4_4:74566708-74566727 | Msa0702780:intron | 55.0% | |
| GGGGATCTTGACAGAGTTCC+AGG | + | chr4_4:74568521-74568540 | Msa0702780:intron | 55.0% | |
| GTTGTCTGGCGTAAGGGAGA+GGG | + | chr4_4:74569630-74569649 | Msa0702780:intron | 55.0% | |
| TTGTCTGGCGTAAGGGAGAG+GGG | + | chr4_4:74569631-74569650 | Msa0702780:intron | 55.0% | |
| TTTCTCTGCTGCTGTGACCG+TGG | + | chr4_4:74569688-74569707 | Msa0702780:intron | 55.0% | |
| GTGTCCGTATAGCTGCTGAG+GGG | + | chr4_4:74569726-74569745 | Msa0702780:intron | 55.0% | |
| !! | GTCGGATTTTGGGGGTTTGG+AGG | + | chr4_4:74569928-74569947 | Msa0702780:intron | 55.0% |
| CCCTCGCAAGACACAAGGAA+TGG | - | chr4_4:74570024-74570043 | None:intergenic | 55.0% | |
| !! | GTTGACTTGGGACAGGACAG+TGG | + | chr4_4:74571067-74571086 | Msa0702780:intron | 55.0% |
| CCTGGCTGTGAGAAGGGAAC+CGG | + | chr4_4:74568364-74568383 | Msa0702780:CDS | 60.0% | |
| GGTTGTCTGGCGTAAGGGAG+AGG | + | chr4_4:74569629-74569648 | Msa0702780:intron | 60.0% | |
| TGTCTGGCGTAAGGGAGAGG+GGG | + | chr4_4:74569632-74569651 | Msa0702780:intron | 60.0% | |
| GCTGCCCCTCAGCAGCTATA+CGG | - | chr4_4:74569733-74569752 | None:intergenic | 60.0% | |
| CGACACCCTCGCAAGACACA+AGG | - | chr4_4:74570029-74570048 | None:intergenic | 60.0% | |
| AGCAGTTTCAACCCCGGCCA+TGG | - | chr4_4:74571253-74571272 | None:intergenic | 60.0% | |
| CCGGTTCCCTTCTCACAGCC+AGG | - | chr4_4:74568367-74568386 | None:intergenic | 65.0% | |
| GTCTGGCGTAAGGGAGAGGG+GGG | + | chr4_4:74569633-74569652 | Msa0702780:intron | 65.0% | |
| !! | AGGGAGAGGGGGGCTGCTTT+TGG | + | chr4_4:74569643-74569662 | Msa0702780:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 74566453 | 74571821 | 74566453 | ID=Msa0702780;Name=Msa0702780 |
| chr4_4 | mRNA | 74566453 | 74571821 | 74566453 | ID=Msa0702780-mRNA-1;Parent=Msa0702780;Name=Msa0702780-mRNA-1;_AED=0.41;_eAED=0.50;_QI=29|0.42|0.62|1|0.85|0.87|8|204|180 |
| chr4_4 | exon | 74566453 | 74566562 | 74566453 | ID=Msa0702780-mRNA-1:exon:23247;Parent=Msa0702780-mRNA-1 |
| chr4_4 | exon | 74567177 | 74567202 | 74567177 | ID=Msa0702780-mRNA-1:exon:23248;Parent=Msa0702780-mRNA-1 |
| chr4_4 | exon | 74567312 | 74567399 | 74567312 | ID=Msa0702780-mRNA-1:exon:23249;Parent=Msa0702780-mRNA-1 |
| chr4_4 | exon | 74567536 | 74567679 | 74567536 | ID=Msa0702780-mRNA-1:exon:23250;Parent=Msa0702780-mRNA-1 |
| chr4_4 | exon | 74568176 | 74568241 | 74568176 | ID=Msa0702780-mRNA-1:exon:23251;Parent=Msa0702780-mRNA-1 |
| chr4_4 | exon | 74568343 | 74568416 | 74568343 | ID=Msa0702780-mRNA-1:exon:23252;Parent=Msa0702780-mRNA-1 |
| chr4_4 | exon | 74571221 | 74571280 | 74571221 | ID=Msa0702780-mRNA-1:exon:23253;Parent=Msa0702780-mRNA-1 |
| chr4_4 | exon | 74571614 | 74571821 | 74571614 | ID=Msa0702780-mRNA-1:exon:23254;Parent=Msa0702780-mRNA-1 |
| chr4_4 | five_prime_UTR | 74566453 | 74566481 | 74566453 | ID=Msa0702780-mRNA-1:five_prime_utr;Parent=Msa0702780-mRNA-1 |
| chr4_4 | CDS | 74566482 | 74566562 | 74566482 | ID=Msa0702780-mRNA-1:cds;Parent=Msa0702780-mRNA-1 |
| chr4_4 | CDS | 74567177 | 74567202 | 74567177 | ID=Msa0702780-mRNA-1:cds;Parent=Msa0702780-mRNA-1 |
| chr4_4 | CDS | 74567312 | 74567399 | 74567312 | ID=Msa0702780-mRNA-1:cds;Parent=Msa0702780-mRNA-1 |
| chr4_4 | CDS | 74567536 | 74567679 | 74567536 | ID=Msa0702780-mRNA-1:cds;Parent=Msa0702780-mRNA-1 |
| chr4_4 | CDS | 74568176 | 74568241 | 74568176 | ID=Msa0702780-mRNA-1:cds;Parent=Msa0702780-mRNA-1 |
| chr4_4 | CDS | 74568343 | 74568416 | 74568343 | ID=Msa0702780-mRNA-1:cds;Parent=Msa0702780-mRNA-1 |
| chr4_4 | CDS | 74571221 | 74571280 | 74571221 | ID=Msa0702780-mRNA-1:cds;Parent=Msa0702780-mRNA-1 |
| chr4_4 | CDS | 74571614 | 74571617 | 74571614 | ID=Msa0702780-mRNA-1:cds;Parent=Msa0702780-mRNA-1 |
| chr4_4 | three_prime_UTR | 74571618 | 74571821 | 74571618 | ID=Msa0702780-mRNA-1:three_prime_utr;Parent=Msa0702780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
