Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0657730 | AFK46804.1 | 87.755 | 49 | 6 | 0 | 63 | 111 | 86 | 134 | 6.06e-21 | 92.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0657730 | sp|Q8VZU2|SY132_ARATH | 53.061 | 49 | 23 | 0 | 63 | 111 | 81 | 129 | 3.72e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0657730 | I3T2R2 | 87.755 | 49 | 6 | 0 | 63 | 111 | 86 | 134 | 2.89e-21 | 92.8 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0075880 | Msa0657730 | 0.803431 | 3.497777e-49 | -8.615850e-47 |
| Msa0657730 | Msa0663240 | 0.804874 | 1.751912e-49 | -8.615850e-47 |
| Msa0657730 | Msa0688480 | 0.809476 | 1.856678e-50 | -8.615850e-47 |
| Msa0657730 | Msa0702780 | 0.910396 | 1.963913e-82 | -8.615850e-47 |
| Msa0657730 | Msa0828940 | 0.894986 | 1.471023e-75 | -8.615850e-47 |
| Msa0657730 | Msa0885280 | 0.802709 | 4.932989e-49 | -8.615850e-47 |
| Msa0657730 | Msa0893130 | 0.849031 | 4.197873e-60 | -8.615850e-47 |
| Msa0657730 | Msa0893140 | 0.833336 | 5.655176e-56 | -8.615850e-47 |
| Msa0657730 | Msa0925250 | 0.813397 | 2.613174e-51 | -8.615850e-47 |
| Msa0657730 | Msa0925290 | 0.808214 | 3.456878e-50 | -8.615850e-47 |
| Msa0657730 | Msa0953120 | 0.813859 | 2.068012e-51 | -8.615850e-47 |
| Msa0657730 | Msa1014540 | 0.801055 | 1.078540e-48 | -8.615850e-47 |
| Msa0657730 | Msa1052830 | 0.808987 | 2.363655e-50 | -8.615850e-47 |
| Msa0657730 | Msa1075220 | -0.805089 | 1.579725e-49 | -8.615850e-47 |
| Msa0657730 | Msa1137570 | 0.801006 | 1.103545e-48 | -8.615850e-47 |
| Msa0657730 | Msa1153410 | 0.845866 | 3.108294e-59 | -8.615850e-47 |
| Msa0657730 | Msa1411020 | 0.804779 | 1.833428e-49 | -8.615850e-47 |
| Msa0657730 | Msa1424290 | 0.804274 | 2.336727e-49 | -8.615850e-47 |
| Msa0657730 | Msa1434350 | 0.802585 | 5.232162e-49 | -8.615850e-47 |
| Msa0657730 | Msa1439320 | 0.806580 | 7.676127e-50 | -8.615850e-47 |
| Msa0657730 | Msa1451620 | -0.800312 | 1.528567e-48 | -8.615850e-47 |
| Msa0223260 | Msa0657730 | 0.817421 | 3.326745e-52 | -8.615850e-47 |
| Msa0479340 | Msa0657730 | 0.805955 | 1.039847e-49 | -8.615850e-47 |
| Msa0258760 | Msa0657730 | 0.806036 | 9.996929e-50 | -8.615850e-47 |
| Msa0272830 | Msa0657730 | 0.817996 | 2.467447e-52 | -8.615850e-47 |
| Msa0323080 | Msa0657730 | 0.805139 | 1.542279e-49 | -8.615850e-47 |
| Msa0532350 | Msa0657730 | 0.804546 | 2.051351e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0657730 | MtrunA17_Chr2g0322801 | 87.755 | 49 | 6 | 0 | 63 | 111 | 86 | 134 | 5.99e-24 | 92.8 |
| Msa0657730 | MtrunA17_Chr3g0126151 | 82.759 | 29 | 5 | 0 | 37 | 65 | 47 | 75 | 6.41e-11 | 55.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0657730 | AT5G08080.5 | 53.061 | 49 | 23 | 0 | 63 | 111 | 81 | 129 | 3.26e-13 | 63.5 |
| Msa0657730 | AT5G08080.2 | 53.061 | 49 | 23 | 0 | 63 | 111 | 81 | 129 | 3.26e-13 | 63.5 |
| Msa0657730 | AT5G08080.1 | 53.061 | 49 | 23 | 0 | 63 | 111 | 81 | 129 | 3.78e-13 | 64.3 |
| Msa0657730 | AT5G08080.4 | 53.061 | 49 | 23 | 0 | 63 | 111 | 81 | 129 | 3.78e-13 | 64.3 |
| Msa0657730 | AT5G08080.3 | 53.061 | 49 | 23 | 0 | 63 | 111 | 92 | 140 | 4.32e-13 | 63.9 |
| Msa0657730 | AT3G03800.2 | 53.061 | 49 | 23 | 0 | 63 | 111 | 82 | 130 | 1.03e-12 | 62.8 |
| Msa0657730 | AT3G03800.1 | 53.061 | 49 | 23 | 0 | 63 | 111 | 82 | 130 | 1.03e-12 | 62.8 |
Find 26 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGGAGGAAGAAGGGAAAT+TGG | 0.330889 | 4_3:-67600352 | Msa0657730:CDS |
| AATGGAGGGAGAGGAGAAGA+AGG | 0.408209 | 4_3:-67600385 | Msa0657730:CDS |
| AGAAGGGAAATTGGAGAAGA+AGG | 0.422017 | 4_3:-67600343 | Msa0657730:CDS |
| AATTTCCCTTCTTCCTCCAT+CGG | 0.440960 | 4_3:+67600354 | None:intergenic |
| CATTCTTGCTCCGTCAATAC+CGG | 0.466523 | 4_3:+67598482 | None:intergenic |
| TTATGAAGAGGATTTGAAGC+AGG | 0.468923 | 4_3:-67599488 | Msa0657730:intron |
| GAAAAGGATATTGATGAGGT+TGG | 0.486934 | 4_3:-67598695 | Msa0657730:intron |
| AAGAAGCCGATGGAGGAAGA+AGG | 0.492336 | 4_3:-67600360 | Msa0657730:CDS |
| CAAAAGCCTGGCTGTGAGAA+GGG | 0.499127 | 4_3:-67598507 | Msa0657730:CDS |
| CCGGTTCCCTTCTCACAGCC+AGG | 0.501105 | 4_3:+67598501 | None:intergenic |
| CCTGGCTGTGAGAAGGGAAC+CGG | 0.506291 | 4_3:-67598501 | Msa0657730:CDS |
| GAACGAGAGAATGGAGGGAG+AGG | 0.515280 | 4_3:-67600394 | Msa0657730:exon |
| AAACAGAACGAGAGAATGGA+GGG | 0.517664 | 4_3:-67600399 | Msa0657730:exon |
| GAGAAGGGAACCGGTATTGA+CGG | 0.524006 | 4_3:-67598492 | Msa0657730:CDS |
| CTTTGGTTCATGCAGCTGCT+CGG | 0.524841 | 4_3:-67599685 | Msa0657730:intron |
| CTAAACAATAGACAAAAGCC+TGG | 0.535553 | 4_3:-67598519 | Msa0657730:CDS |
| ACAAAAGCCTGGCTGTGAGA+AGG | 0.542434 | 4_3:-67598508 | Msa0657730:CDS |
| CAACATTGAAGATTATGAAG+AGG | 0.549840 | 4_3:-67599500 | Msa0657730:CDS |
| GAAGAAGGAAAAGAAGCCGA+TGG | 0.563967 | 4_3:-67600370 | Msa0657730:CDS |
| AGAAGCCGATGGAGGAAGAA+GGG | 0.579655 | 4_3:-67600359 | Msa0657730:CDS |
| AAAACAGAACGAGAGAATGG+AGG | 0.592760 | 4_3:-67600400 | Msa0657730:exon |
| AGAGCTGCAATTAAGTTCAG+AGG | 0.598621 | 4_3:-67599544 | Msa0657730:CDS |
| AATTAAGTTCAGAGGAGTCG+AGG | 0.627825 | 4_3:-67599536 | Msa0657730:CDS |
| GAAGGAAAAGAAGCCGATGG+AGG | 0.645079 | 4_3:-67600367 | Msa0657730:CDS |
| GATGGAAAAGGATATTGATG+AGG | 0.655016 | 4_3:-67598699 | Msa0657730:intron |
| GGTTGGAAAGATTGCACATG+TGG | 0.657598 | 4_3:-67598678 | Msa0657730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAGCATATAATAAATTTT+TGG | - | chr4_3:67599287-67599306 | Msa0657730:intron | 10.0% |
| !!! | TTTAGCATATAATAAATTTT+TGG | - | chr4_3:67599287-67599306 | Msa0657730:intron | 10.0% |
| !! | TTCATTAAGAAATTGAAATT+GGG | + | chr4_3:67598640-67598659 | None:intergenic | 15.0% |
| !! | AATTTCAATTTCTTAATGAA+GGG | - | chr4_3:67598640-67598659 | Msa0657730:intron | 15.0% |
| !! | AAATTGAATGTAAAAATTGT+AGG | - | chr4_3:67599064-67599083 | Msa0657730:intron | 15.0% |
| !! | AATTGAATGTAAAAATTGTA+GGG | - | chr4_3:67599065-67599084 | Msa0657730:intron | 15.0% |
| !! | AAAAATATTCTCAACATTAA+AGG | + | chr4_3:67599157-67599176 | None:intergenic | 15.0% |
| !!! | TAATGTTGAGAATATTTTTT+CGG | - | chr4_3:67599158-67599177 | Msa0657730:intron | 15.0% |
| !!! | AAATTTCATTCATTCTTTTA+TGG | - | chr4_3:67599245-67599264 | Msa0657730:intron | 15.0% |
| !! | AATAATTGATTGAAAACTAT+AGG | + | chr4_3:67599469-67599488 | None:intergenic | 15.0% |
| !! | ATTCAAGATACAAAAAAAAA+AGG | + | chr4_3:67599493-67599512 | None:intergenic | 15.0% |
| !! | TGTTATATAGATTTCAAATA+TGG | - | chr4_3:67600300-67600319 | Msa0657730:intron | 15.0% |
| !! | TTCATTAAGAAATTGAAATT+GGG | + | chr4_3:67598640-67598659 | None:intergenic | 15.0% |
| !! | AATTTCAATTTCTTAATGAA+GGG | - | chr4_3:67598640-67598659 | Msa0657730:intron | 15.0% |
| !! | AAATTGAATGTAAAAATTGT+AGG | - | chr4_3:67599064-67599083 | Msa0657730:intron | 15.0% |
| !! | AATTGAATGTAAAAATTGTA+GGG | - | chr4_3:67599065-67599084 | Msa0657730:intron | 15.0% |
| !! | AAAAATATTCTCAACATTAA+AGG | + | chr4_3:67599157-67599176 | None:intergenic | 15.0% |
| !!! | TAATGTTGAGAATATTTTTT+CGG | - | chr4_3:67599158-67599177 | Msa0657730:intron | 15.0% |
| !!! | AAATTTCATTCATTCTTTTA+TGG | - | chr4_3:67599245-67599264 | Msa0657730:intron | 15.0% |
| !! | AATAATTGATTGAAAACTAT+AGG | + | chr4_3:67599469-67599488 | None:intergenic | 15.0% |
| !! | ATTCAAGATACAAAAAAAAA+AGG | + | chr4_3:67599493-67599512 | None:intergenic | 15.0% |
| !! | TGTTATATAGATTTCAAATA+TGG | - | chr4_3:67600300-67600319 | Msa0657730:intron | 15.0% |
| !! | TCATTAAGAAATTGAAATTG+GGG | + | chr4_3:67598639-67598658 | None:intergenic | 20.0% |
| !! | CTTCATTAAGAAATTGAAAT+TGG | + | chr4_3:67598641-67598660 | None:intergenic | 20.0% |
| !! | CAATTTCAATTTCTTAATGA+AGG | - | chr4_3:67598639-67598658 | Msa0657730:intron | 20.0% |
| !! | AATTAAGCTTTCTTTGAATA+AGG | + | chr4_3:67598693-67598712 | None:intergenic | 20.0% |
| !!! | TGTAATTGTTTTATGATGAA+TGG | - | chr4_3:67599103-67599122 | Msa0657730:intron | 20.0% |
| !!! | AATGTTGAGAATATTTTTTC+GGG | - | chr4_3:67599159-67599178 | Msa0657730:intron | 20.0% |
| !!! | AATTTTAACTTCAATGTGAA+TGG | - | chr4_3:67599878-67599897 | Msa0657730:intron | 20.0% |
| !! | ATGGATAAAAAATAGTTAAC+CGG | - | chr4_3:67600319-67600338 | Msa0657730:intron | 20.0% |
| !! | TCATTAAGAAATTGAAATTG+GGG | + | chr4_3:67598639-67598658 | None:intergenic | 20.0% |
| !! | CTTCATTAAGAAATTGAAAT+TGG | + | chr4_3:67598641-67598660 | None:intergenic | 20.0% |
| !! | CAATTTCAATTTCTTAATGA+AGG | - | chr4_3:67598639-67598658 | Msa0657730:intron | 20.0% |
| !! | AATTAAGCTTTCTTTGAATA+AGG | + | chr4_3:67598693-67598712 | None:intergenic | 20.0% |
| !!! | TGTAATTGTTTTATGATGAA+TGG | - | chr4_3:67599103-67599122 | Msa0657730:intron | 20.0% |
| !!! | AATGTTGAGAATATTTTTTC+GGG | - | chr4_3:67599159-67599178 | Msa0657730:intron | 20.0% |
| !!! | AATTTTAACTTCAATGTGAA+TGG | - | chr4_3:67599878-67599897 | Msa0657730:intron | 20.0% |
| !! | ATGGATAAAAAATAGTTAAC+CGG | - | chr4_3:67600319-67600338 | Msa0657730:intron | 20.0% |
| ! | GTTTGGATGAAATTGAAATT+GGG | + | chr4_3:67598601-67598620 | None:intergenic | 25.0% |
| ! | AGAAAGCTTAATTGAAAGTA+TGG | - | chr4_3:67598700-67598719 | Msa0657730:intron | 25.0% |
| !! | GAAAGCTTAATTGAAAGTAT+GGG | - | chr4_3:67598701-67598720 | Msa0657730:intron | 25.0% |
| !! | AAAGCTTAATTGAAAGTATG+GGG | - | chr4_3:67598702-67598721 | Msa0657730:intron | 25.0% |
| ! | AAAAAGCTATTTGACAATAC+TGG | + | chr4_3:67598890-67598909 | None:intergenic | 25.0% |
| ! | TATGATAATTTCATCCCATA+AGG | - | chr4_3:67599017-67599036 | Msa0657730:intron | 25.0% |
| ! | TTACATAGAACATACCTTAT+GGG | + | chr4_3:67599034-67599053 | None:intergenic | 25.0% |
| ! | TTTACATAGAACATACCTTA+TGG | + | chr4_3:67599035-67599054 | None:intergenic | 25.0% |
| !! | TCTGAAAATCAATTTGTTTC+AGG | - | chr4_3:67599126-67599145 | Msa0657730:intron | 25.0% |
| !!! | ATGTTGAGAATATTTTTTCG+GGG | - | chr4_3:67599160-67599179 | Msa0657730:intron | 25.0% |
| ! | TGTTGTGATTTAAATGAGTT+TGG | - | chr4_3:67599513-67599532 | Msa0657730:CDS | 25.0% |
| !! | TAATGCTCATAAGATTTTAC+TGG | - | chr4_3:67600127-67600146 | Msa0657730:intron | 25.0% |
| ! | TGGATAAAAAATAGTTAACC+GGG | - | chr4_3:67600320-67600339 | Msa0657730:intron | 25.0% |
| ! | GTTTGGATGAAATTGAAATT+GGG | + | chr4_3:67598601-67598620 | None:intergenic | 25.0% |
| ! | AGAAAGCTTAATTGAAAGTA+TGG | - | chr4_3:67598700-67598719 | Msa0657730:intron | 25.0% |
| !! | GAAAGCTTAATTGAAAGTAT+GGG | - | chr4_3:67598701-67598720 | Msa0657730:intron | 25.0% |
| !! | AAAGCTTAATTGAAAGTATG+GGG | - | chr4_3:67598702-67598721 | Msa0657730:intron | 25.0% |
| ! | AAAAAGCTATTTGACAATAC+TGG | + | chr4_3:67598890-67598909 | None:intergenic | 25.0% |
| ! | TATGATAATTTCATCCCATA+AGG | - | chr4_3:67599017-67599036 | Msa0657730:intron | 25.0% |
| ! | TTACATAGAACATACCTTAT+GGG | + | chr4_3:67599034-67599053 | None:intergenic | 25.0% |
| ! | TTTACATAGAACATACCTTA+TGG | + | chr4_3:67599035-67599054 | None:intergenic | 25.0% |
| !! | TCTGAAAATCAATTTGTTTC+AGG | - | chr4_3:67599126-67599145 | Msa0657730:intron | 25.0% |
| !!! | ATGTTGAGAATATTTTTTCG+GGG | - | chr4_3:67599160-67599179 | Msa0657730:intron | 25.0% |
| ! | TGTTGTGATTTAAATGAGTT+TGG | - | chr4_3:67599513-67599532 | Msa0657730:CDS | 25.0% |
| !! | TAATGCTCATAAGATTTTAC+TGG | - | chr4_3:67600127-67600146 | Msa0657730:intron | 25.0% |
| ! | TGGATAAAAAATAGTTAACC+GGG | - | chr4_3:67600320-67600339 | Msa0657730:intron | 25.0% |
| GGTTTGGATGAAATTGAAAT+TGG | + | chr4_3:67598602-67598621 | None:intergenic | 30.0% | |
| ! | AAGCTTAATTGAAAGTATGG+GGG | - | chr4_3:67598703-67598722 | Msa0657730:intron | 30.0% |
| TCATTTCTGTTTGATCTGAA+TGG | - | chr4_3:67598793-67598812 | Msa0657730:intron | 30.0% | |
| AGATCAGATACAAAGGAAAA+TGG | + | chr4_3:67598855-67598874 | None:intergenic | 30.0% | |
| ! | ATTTTCCTTTGTATCTGATC+TGG | - | chr4_3:67598854-67598873 | Msa0657730:intron | 30.0% |
| ! | TTTTACCAGATCAGATACAA+AGG | + | chr4_3:67598862-67598881 | None:intergenic | 30.0% |
| TATTCTCAACATTAAAGGAC+AGG | + | chr4_3:67599152-67599171 | None:intergenic | 30.0% | |
| !!! | TGTTGAGAATATTTTTTCGG+GGG | - | chr4_3:67599161-67599180 | Msa0657730:intron | 30.0% |
| CAACATTGAAGATTATGAAG+AGG | - | chr4_3:67599380-67599399 | Msa0657730:intron | 30.0% | |
| TGTGATTTAAATGAGTTTGG+AGG | - | chr4_3:67599516-67599535 | Msa0657730:CDS | 30.0% | |
| AGTTTGGAGGAATTAATTTC+AGG | - | chr4_3:67599529-67599548 | Msa0657730:CDS | 30.0% | |
| !!! | CAACTCTTTCAAGTTTTTCA+TGG | - | chr4_3:67599583-67599602 | Msa0657730:intron | 30.0% |
| ! | AAGTTTTTCATGGCATACAA+AGG | - | chr4_3:67599593-67599612 | Msa0657730:intron | 30.0% |
| !!! | GGCATACAAAGGATTTTTTA+TGG | - | chr4_3:67599604-67599623 | Msa0657730:intron | 30.0% |
| !! | TAGTTCTGATTATTGTGATC+TGG | - | chr4_3:67599758-67599777 | Msa0657730:intron | 30.0% |
| ! | TCATAAGATTTTACTGGTAC+TGG | - | chr4_3:67600133-67600152 | Msa0657730:intron | 30.0% |
| CTGAATCATAACAATTGTCT+TGG | - | chr4_3:67600159-67600178 | Msa0657730:intron | 30.0% | |
| ATCATAACAATTGTCTTGGA+TGG | - | chr4_3:67600163-67600182 | Msa0657730:intron | 30.0% | |
| ATTCTGCATAAAACATATCC+CGG | + | chr4_3:67600341-67600360 | None:intergenic | 30.0% | |
| GGTTTGGATGAAATTGAAAT+TGG | + | chr4_3:67598602-67598621 | None:intergenic | 30.0% | |
| ! | AAGCTTAATTGAAAGTATGG+GGG | - | chr4_3:67598703-67598722 | Msa0657730:intron | 30.0% |
| TCATTTCTGTTTGATCTGAA+TGG | - | chr4_3:67598793-67598812 | Msa0657730:intron | 30.0% | |
| AGATCAGATACAAAGGAAAA+TGG | + | chr4_3:67598855-67598874 | None:intergenic | 30.0% | |
| ! | ATTTTCCTTTGTATCTGATC+TGG | - | chr4_3:67598854-67598873 | Msa0657730:intron | 30.0% |
| ! | TTTTACCAGATCAGATACAA+AGG | + | chr4_3:67598862-67598881 | None:intergenic | 30.0% |
| TATTCTCAACATTAAAGGAC+AGG | + | chr4_3:67599152-67599171 | None:intergenic | 30.0% | |
| !!! | TGTTGAGAATATTTTTTCGG+GGG | - | chr4_3:67599161-67599180 | Msa0657730:intron | 30.0% |
| CAACATTGAAGATTATGAAG+AGG | - | chr4_3:67599380-67599399 | Msa0657730:intron | 30.0% | |
| TGTGATTTAAATGAGTTTGG+AGG | - | chr4_3:67599516-67599535 | Msa0657730:CDS | 30.0% | |
| AGTTTGGAGGAATTAATTTC+AGG | - | chr4_3:67599529-67599548 | Msa0657730:CDS | 30.0% | |
| !!! | CAACTCTTTCAAGTTTTTCA+TGG | - | chr4_3:67599583-67599602 | Msa0657730:intron | 30.0% |
| ! | AAGTTTTTCATGGCATACAA+AGG | - | chr4_3:67599593-67599612 | Msa0657730:intron | 30.0% |
| !!! | GGCATACAAAGGATTTTTTA+TGG | - | chr4_3:67599604-67599623 | Msa0657730:intron | 30.0% |
| !! | TAGTTCTGATTATTGTGATC+TGG | - | chr4_3:67599758-67599777 | Msa0657730:intron | 30.0% |
| ! | TCATAAGATTTTACTGGTAC+TGG | - | chr4_3:67600133-67600152 | Msa0657730:intron | 30.0% |
| CTGAATCATAACAATTGTCT+TGG | - | chr4_3:67600159-67600178 | Msa0657730:intron | 30.0% | |
| ATCATAACAATTGTCTTGGA+TGG | - | chr4_3:67600163-67600182 | Msa0657730:intron | 30.0% | |
| ATTCTGCATAAAACATATCC+CGG | + | chr4_3:67600341-67600360 | None:intergenic | 30.0% | |
| AGAAAAACAGAACGAGAGAA+TGG | - | chr4_3:67598477-67598496 | Msa0657730:CDS | 35.0% | |
| ! | GAAGGCAAGCTTCAATTTTA+AGG | - | chr4_3:67598555-67598574 | Msa0657730:intron | 35.0% |
| TGAAATTGGGCTGATAGAAA+GGG | + | chr4_3:67598588-67598607 | None:intergenic | 35.0% | |
| TTGAAATTGGGCTGATAGAA+AGG | + | chr4_3:67598589-67598608 | None:intergenic | 35.0% | |
| ATTGAAATTGGGGCTGAAAA+GGG | + | chr4_3:67598629-67598648 | None:intergenic | 35.0% | |
| AATTGAAATTGGGGCTGAAA+AGG | + | chr4_3:67598630-67598649 | None:intergenic | 35.0% | |
| ! | TTAATTGAAAGTATGGGGGT+TGG | - | chr4_3:67598707-67598726 | Msa0657730:intron | 35.0% |
| ! | TAATTGAAAGTATGGGGGTT+GGG | - | chr4_3:67598708-67598727 | Msa0657730:intron | 35.0% |
| GAGGAAGAAACAAGAAGAAT+TGG | - | chr4_3:67598741-67598760 | Msa0657730:intron | 35.0% | |
| ! | TTATGAAGAGGATTTGAAGC+AGG | - | chr4_3:67599392-67599411 | Msa0657730:intron | 35.0% |
| ! | ATTTGAAGCAGGTGAGTTAT+GGG | - | chr4_3:67599403-67599422 | Msa0657730:intron | 35.0% |
| CGTCTATGTTTCTTAATCTC+AGG | - | chr4_3:67599557-67599576 | Msa0657730:CDS | 35.0% | |
| AAAAAACCTTACCATCGCTA+AGG | + | chr4_3:67599682-67599701 | None:intergenic | 35.0% | |
| ! | CAAGTTTCAGTATTTTCGCA+TGG | - | chr4_3:67599960-67599979 | Msa0657730:intron | 35.0% |
| CGCATGGAGTATAAGAAAAT+TGG | - | chr4_3:67599976-67599995 | Msa0657730:intron | 35.0% | |
| ! | ATAGCAATAGCAATTTTCGC+AGG | - | chr4_3:67600003-67600022 | Msa0657730:intron | 35.0% |
| !! | ACAAAAGCATTTGCCATGAA+AGG | - | chr4_3:67600052-67600071 | Msa0657730:intron | 35.0% |
| CCTTGTAACAATACCTTTCA+TGG | + | chr4_3:67600068-67600087 | None:intergenic | 35.0% | |
| !! | CCATGAAAGGTATTGTTACA+AGG | - | chr4_3:67600065-67600084 | Msa0657730:intron | 35.0% |
| ! | GGCAATGTCTGTAATTCTTT+TGG | - | chr4_3:67600086-67600105 | Msa0657730:intron | 35.0% |
| ACAATTGTCTTGGATGGAAA+AGG | - | chr4_3:67600169-67600188 | Msa0657730:intron | 35.0% | |
| GATGGAAAAGGATATTGATG+AGG | - | chr4_3:67600181-67600200 | Msa0657730:intron | 35.0% | |
| GAAAAGGATATTGATGAGGT+TGG | - | chr4_3:67600185-67600204 | Msa0657730:intron | 35.0% | |
| CTAAACAATAGACAAAAGCC+TGG | - | chr4_3:67600361-67600380 | Msa0657730:CDS | 35.0% | |
| AGAAAAACAGAACGAGAGAA+TGG | - | chr4_3:67598477-67598496 | Msa0657730:CDS | 35.0% | |
| ! | GAAGGCAAGCTTCAATTTTA+AGG | - | chr4_3:67598555-67598574 | Msa0657730:intron | 35.0% |
| TGAAATTGGGCTGATAGAAA+GGG | + | chr4_3:67598588-67598607 | None:intergenic | 35.0% | |
| TTGAAATTGGGCTGATAGAA+AGG | + | chr4_3:67598589-67598608 | None:intergenic | 35.0% | |
| ATTGAAATTGGGGCTGAAAA+GGG | + | chr4_3:67598629-67598648 | None:intergenic | 35.0% | |
| AATTGAAATTGGGGCTGAAA+AGG | + | chr4_3:67598630-67598649 | None:intergenic | 35.0% | |
| ! | TTAATTGAAAGTATGGGGGT+TGG | - | chr4_3:67598707-67598726 | Msa0657730:intron | 35.0% |
| ! | TAATTGAAAGTATGGGGGTT+GGG | - | chr4_3:67598708-67598727 | Msa0657730:intron | 35.0% |
| GAGGAAGAAACAAGAAGAAT+TGG | - | chr4_3:67598741-67598760 | Msa0657730:intron | 35.0% | |
| ! | TTATGAAGAGGATTTGAAGC+AGG | - | chr4_3:67599392-67599411 | Msa0657730:intron | 35.0% |
| ! | ATTTGAAGCAGGTGAGTTAT+GGG | - | chr4_3:67599403-67599422 | Msa0657730:intron | 35.0% |
| CGTCTATGTTTCTTAATCTC+AGG | - | chr4_3:67599557-67599576 | Msa0657730:CDS | 35.0% | |
| AAAAAACCTTACCATCGCTA+AGG | + | chr4_3:67599682-67599701 | None:intergenic | 35.0% | |
| ! | CAAGTTTCAGTATTTTCGCA+TGG | - | chr4_3:67599960-67599979 | Msa0657730:intron | 35.0% |
| CGCATGGAGTATAAGAAAAT+TGG | - | chr4_3:67599976-67599995 | Msa0657730:intron | 35.0% | |
| ! | ATAGCAATAGCAATTTTCGC+AGG | - | chr4_3:67600003-67600022 | Msa0657730:intron | 35.0% |
| !! | ACAAAAGCATTTGCCATGAA+AGG | - | chr4_3:67600052-67600071 | Msa0657730:intron | 35.0% |
| CCTTGTAACAATACCTTTCA+TGG | + | chr4_3:67600068-67600087 | None:intergenic | 35.0% | |
| !! | CCATGAAAGGTATTGTTACA+AGG | - | chr4_3:67600065-67600084 | Msa0657730:intron | 35.0% |
| ! | GGCAATGTCTGTAATTCTTT+TGG | - | chr4_3:67600086-67600105 | Msa0657730:intron | 35.0% |
| ACAATTGTCTTGGATGGAAA+AGG | - | chr4_3:67600169-67600188 | Msa0657730:intron | 35.0% | |
| GATGGAAAAGGATATTGATG+AGG | - | chr4_3:67600181-67600200 | Msa0657730:intron | 35.0% | |
| GAAAAGGATATTGATGAGGT+TGG | - | chr4_3:67600185-67600204 | Msa0657730:intron | 35.0% | |
| CTAAACAATAGACAAAAGCC+TGG | - | chr4_3:67600361-67600380 | Msa0657730:CDS | 35.0% | |
| AAAACAGAACGAGAGAATGG+AGG | - | chr4_3:67598480-67598499 | Msa0657730:CDS | 40.0% | |
| AAACAGAACGAGAGAATGGA+GGG | - | chr4_3:67598481-67598500 | Msa0657730:CDS | 40.0% | |
| AATTTCCCTTCTTCCTCCAT+CGG | + | chr4_3:67598529-67598548 | None:intergenic | 40.0% | |
| AGAAGGGAAATTGGAGAAGA+AGG | - | chr4_3:67598537-67598556 | Msa0657730:intron | 40.0% | |
| ! | TTGATCTGAATGGTGCTGAA+TGG | - | chr4_3:67598803-67598822 | Msa0657730:intron | 40.0% |
| AGAGCTGCAATTAAGTTCAG+AGG | - | chr4_3:67599336-67599355 | Msa0657730:intron | 40.0% | |
| AATTAAGTTCAGAGGAGTCG+AGG | - | chr4_3:67599344-67599363 | Msa0657730:intron | 40.0% | |
| ! | GATTTGAAGCAGGTGAGTTA+TGG | - | chr4_3:67599402-67599421 | Msa0657730:intron | 40.0% |
| ! | TTTGAAGCAGGTGAGTTATG+GGG | - | chr4_3:67599404-67599423 | Msa0657730:intron | 40.0% |
| ! | TTAAGAAGCGCAAGTCTCTT+TGG | - | chr4_3:67599654-67599673 | Msa0657730:intron | 40.0% |
| ! | ATTTTCGCAGGAAGCTAATG+AGG | - | chr4_3:67600015-67600034 | Msa0657730:intron | 40.0% |
| AAAACAGAACGAGAGAATGG+AGG | - | chr4_3:67598480-67598499 | Msa0657730:CDS | 40.0% | |
| AAACAGAACGAGAGAATGGA+GGG | - | chr4_3:67598481-67598500 | Msa0657730:CDS | 40.0% | |
| AATTTCCCTTCTTCCTCCAT+CGG | + | chr4_3:67598529-67598548 | None:intergenic | 40.0% | |
| AGAAGGGAAATTGGAGAAGA+AGG | - | chr4_3:67598537-67598556 | Msa0657730:intron | 40.0% | |
| ! | TTGATCTGAATGGTGCTGAA+TGG | - | chr4_3:67598803-67598822 | Msa0657730:intron | 40.0% |
| AGAGCTGCAATTAAGTTCAG+AGG | - | chr4_3:67599336-67599355 | Msa0657730:intron | 40.0% | |
| AATTAAGTTCAGAGGAGTCG+AGG | - | chr4_3:67599344-67599363 | Msa0657730:intron | 40.0% | |
| ! | GATTTGAAGCAGGTGAGTTA+TGG | - | chr4_3:67599402-67599421 | Msa0657730:intron | 40.0% |
| ! | TTTGAAGCAGGTGAGTTATG+GGG | - | chr4_3:67599404-67599423 | Msa0657730:intron | 40.0% |
| ! | TTAAGAAGCGCAAGTCTCTT+TGG | - | chr4_3:67599654-67599673 | Msa0657730:intron | 40.0% |
| ! | ATTTTCGCAGGAAGCTAATG+AGG | - | chr4_3:67600015-67600034 | Msa0657730:intron | 40.0% |
| GAAGAAGGAAAAGAAGCCGA+TGG | - | chr4_3:67598510-67598529 | Msa0657730:CDS | 45.0% | |
| GATGGAGGAAGAAGGGAAAT+TGG | - | chr4_3:67598528-67598547 | Msa0657730:intron | 45.0% | |
| ATTGGGGCTGAAAAGGGTTA+GGG | + | chr4_3:67598623-67598642 | None:intergenic | 45.0% | |
| AATTGGGGCTGAAAAGGGTT+AGG | + | chr4_3:67598624-67598643 | None:intergenic | 45.0% | |
| GGTTGGAAAGATTGCACATG+TGG | - | chr4_3:67600202-67600221 | Msa0657730:intron | 45.0% | |
| CATTCTTGCTCCGTCAATAC+CGG | + | chr4_3:67600401-67600420 | None:intergenic | 45.0% | |
| GAAGAAGGAAAAGAAGCCGA+TGG | - | chr4_3:67598510-67598529 | Msa0657730:CDS | 45.0% | |
| GATGGAGGAAGAAGGGAAAT+TGG | - | chr4_3:67598528-67598547 | Msa0657730:intron | 45.0% | |
| ATTGGGGCTGAAAAGGGTTA+GGG | + | chr4_3:67598623-67598642 | None:intergenic | 45.0% | |
| AATTGGGGCTGAAAAGGGTT+AGG | + | chr4_3:67598624-67598643 | None:intergenic | 45.0% | |
| GGTTGGAAAGATTGCACATG+TGG | - | chr4_3:67600202-67600221 | Msa0657730:intron | 45.0% | |
| CATTCTTGCTCCGTCAATAC+CGG | + | chr4_3:67600401-67600420 | None:intergenic | 45.0% | |
| AATGGAGGGAGAGGAGAAGA+AGG | - | chr4_3:67598495-67598514 | Msa0657730:CDS | 50.0% | |
| GAAGGAAAAGAAGCCGATGG+AGG | - | chr4_3:67598513-67598532 | Msa0657730:CDS | 50.0% | |
| AAGAAGCCGATGGAGGAAGA+AGG | - | chr4_3:67598520-67598539 | Msa0657730:CDS | 50.0% | |
| AGAAGCCGATGGAGGAAGAA+GGG | - | chr4_3:67598521-67598540 | Msa0657730:CDS | 50.0% | |
| GGCTGAAAAGGGTTAGGGTT+TGG | + | chr4_3:67598618-67598637 | None:intergenic | 50.0% | |
| ATGGGGGTTGGGTTTGCAAT+TGG | - | chr4_3:67598719-67598738 | Msa0657730:intron | 50.0% | |
| CGGGGGTTATCAGTACTCTT+TGG | - | chr4_3:67599178-67599197 | Msa0657730:intron | 50.0% | |
| ! | CTTTGGTTCATGCAGCTGCT+CGG | - | chr4_3:67599195-67599214 | Msa0657730:intron | 50.0% |
| !! | TCTCTTTGGTGCCTTAGCGA+TGG | - | chr4_3:67599668-67599687 | Msa0657730:intron | 50.0% |
| ! | TTGGTGCCTTAGCGATGGTA+AGG | - | chr4_3:67599673-67599692 | Msa0657730:intron | 50.0% |
| ACAAAAGCCTGGCTGTGAGA+AGG | - | chr4_3:67600372-67600391 | Msa0657730:CDS | 50.0% | |
| CAAAAGCCTGGCTGTGAGAA+GGG | - | chr4_3:67600373-67600392 | Msa0657730:CDS | 50.0% | |
| ! | GAGAAGGGAACCGGTATTGA+CGG | - | chr4_3:67600388-67600407 | Msa0657730:exon | 50.0% |
| AATGGAGGGAGAGGAGAAGA+AGG | - | chr4_3:67598495-67598514 | Msa0657730:CDS | 50.0% | |
| GAAGGAAAAGAAGCCGATGG+AGG | - | chr4_3:67598513-67598532 | Msa0657730:CDS | 50.0% | |
| AAGAAGCCGATGGAGGAAGA+AGG | - | chr4_3:67598520-67598539 | Msa0657730:CDS | 50.0% | |
| AGAAGCCGATGGAGGAAGAA+GGG | - | chr4_3:67598521-67598540 | Msa0657730:CDS | 50.0% | |
| GGCTGAAAAGGGTTAGGGTT+TGG | + | chr4_3:67598618-67598637 | None:intergenic | 50.0% | |
| ATGGGGGTTGGGTTTGCAAT+TGG | - | chr4_3:67598719-67598738 | Msa0657730:intron | 50.0% | |
| CGGGGGTTATCAGTACTCTT+TGG | - | chr4_3:67599178-67599197 | Msa0657730:intron | 50.0% | |
| ! | CTTTGGTTCATGCAGCTGCT+CGG | - | chr4_3:67599195-67599214 | Msa0657730:intron | 50.0% |
| !! | TCTCTTTGGTGCCTTAGCGA+TGG | - | chr4_3:67599668-67599687 | Msa0657730:intron | 50.0% |
| ! | TTGGTGCCTTAGCGATGGTA+AGG | - | chr4_3:67599673-67599692 | Msa0657730:intron | 50.0% |
| ACAAAAGCCTGGCTGTGAGA+AGG | - | chr4_3:67600372-67600391 | Msa0657730:CDS | 50.0% | |
| CAAAAGCCTGGCTGTGAGAA+GGG | - | chr4_3:67600373-67600392 | Msa0657730:CDS | 50.0% | |
| ! | GAGAAGGGAACCGGTATTGA+CGG | - | chr4_3:67600388-67600407 | Msa0657730:exon | 50.0% |
| GAACGAGAGAATGGAGGGAG+AGG | - | chr4_3:67598486-67598505 | Msa0657730:CDS | 55.0% | |
| GGGGTTGGGTTTGCAATTGG+AGG | - | chr4_3:67598722-67598741 | Msa0657730:intron | 55.0% | |
| GAACGAGAGAATGGAGGGAG+AGG | - | chr4_3:67598486-67598505 | Msa0657730:CDS | 55.0% | |
| GGGGTTGGGTTTGCAATTGG+AGG | - | chr4_3:67598722-67598741 | Msa0657730:intron | 55.0% | |
| CCTGGCTGTGAGAAGGGAAC+CGG | - | chr4_3:67600379-67600398 | Msa0657730:CDS | 60.0% | |
| CCTGGCTGTGAGAAGGGAAC+CGG | - | chr4_3:67600379-67600398 | Msa0657730:CDS | 60.0% | |
| CCGGTTCCCTTCTCACAGCC+AGG | + | chr4_3:67600382-67600401 | None:intergenic | 65.0% | |
| CCGGTTCCCTTCTCACAGCC+AGG | + | chr4_3:67600382-67600401 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 67598467 | 67600435 | 67598467 | ID=Msa0657730;Name=Msa0657730 |
| chr4_3 | mRNA | 67598467 | 67600435 | 67598467 | ID=Msa0657730-mRNA-1;Parent=Msa0657730;Name=Msa0657730-mRNA-1;_AED=0.45;_eAED=0.45;_QI=29|0.5|0.6|1|0.75|1|5|0|112 |
| chr4_3 | exon | 67598467 | 67598544 | 67598467 | ID=Msa0657730-mRNA-1:exon:19508;Parent=Msa0657730-mRNA-1 |
| chr4_3 | exon | 67598646 | 67598711 | 67598646 | ID=Msa0657730-mRNA-1:exon:19507;Parent=Msa0657730-mRNA-1 |
| chr4_3 | exon | 67599489 | 67599576 | 67599489 | ID=Msa0657730-mRNA-1:exon:19506;Parent=Msa0657730-mRNA-1 |
| chr4_3 | exon | 67599686 | 67599711 | 67599686 | ID=Msa0657730-mRNA-1:exon:19505;Parent=Msa0657730-mRNA-1 |
| chr4_3 | exon | 67600326 | 67600435 | 67600326 | ID=Msa0657730-mRNA-1:exon:19504;Parent=Msa0657730-mRNA-1 |
| chr4_3 | five_prime_UTR | 67600407 | 67600435 | 67600407 | ID=Msa0657730-mRNA-1:five_prime_utr;Parent=Msa0657730-mRNA-1 |
| chr4_3 | CDS | 67600326 | 67600406 | 67600326 | ID=Msa0657730-mRNA-1:cds;Parent=Msa0657730-mRNA-1 |
| chr4_3 | CDS | 67599686 | 67599711 | 67599686 | ID=Msa0657730-mRNA-1:cds;Parent=Msa0657730-mRNA-1 |
| chr4_3 | CDS | 67599489 | 67599576 | 67599489 | ID=Msa0657730-mRNA-1:cds;Parent=Msa0657730-mRNA-1 |
| chr4_3 | CDS | 67598646 | 67598711 | 67598646 | ID=Msa0657730-mRNA-1:cds;Parent=Msa0657730-mRNA-1 |
| chr4_3 | CDS | 67598467 | 67598544 | 67598467 | ID=Msa0657730-mRNA-1:cds;Parent=Msa0657730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
