Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705860 | XP_013446884.1 | 95.110 | 634 | 28 | 1 | 1 | 631 | 1 | 634 | 0.0 | 1254 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705860 | sp|Q9S745|PAD4_ARATH | 38.576 | 604 | 278 | 13 | 9 | 608 | 6 | 520 | 3.42e-120 | 370 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705860 | A0A072TUT8 | 95.110 | 634 | 28 | 1 | 1 | 631 | 1 | 634 | 0.0 | 1254 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046380 | Msa0705860 | 0.821016 | 5.052344e-53 | -8.615850e-47 |
| Msa0660870 | Msa0705860 | 0.814777 | 1.296337e-51 | -8.615850e-47 |
| Msa0705860 | Msa0716750 | 0.820865 | 5.471737e-53 | -8.615850e-47 |
| Msa0705860 | Msa0799280 | 0.818841 | 1.588025e-52 | -8.615850e-47 |
| Msa0705860 | Msa0976290 | 0.813302 | 2.742049e-51 | -8.615850e-47 |
| Msa0705860 | Msa1130390 | 0.818104 | 2.332663e-52 | -8.615850e-47 |
| Msa0131420 | Msa0705860 | 0.806503 | 7.968934e-50 | -8.615850e-47 |
| Msa0464710 | Msa0705860 | 0.815841 | 7.518430e-52 | -8.615850e-47 |
| Msa0342070 | Msa0705860 | 0.802283 | 6.038319e-49 | -8.615850e-47 |
| Msa0569490 | Msa0705860 | 0.911368 | 6.580321e-83 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705860 | MtrunA17_Chr8g0384621 | 95.110 | 634 | 28 | 1 | 1 | 631 | 1 | 634 | 0.0 | 1254 |
| Msa0705860 | MtrunA17_Chr3g0118541 | 30.435 | 506 | 283 | 22 | 127 | 597 | 132 | 603 | 1.28e-50 | 185 |
| Msa0705860 | MtrunA17_Chr3g0118251 | 26.087 | 575 | 325 | 22 | 72 | 600 | 78 | 598 | 1.92e-48 | 179 |
| Msa0705860 | MtrunA17_Chr6g0451561 | 26.157 | 497 | 293 | 16 | 116 | 608 | 120 | 546 | 6.06e-31 | 127 |
| Msa0705860 | MtrunA17_Chr6g0451541 | 24.172 | 513 | 300 | 17 | 106 | 605 | 110 | 546 | 5.48e-27 | 115 |
| Msa0705860 | MtrunA17_Chr6g0451511 | 26.501 | 483 | 287 | 17 | 129 | 608 | 130 | 547 | 1.96e-26 | 114 |
| Msa0705860 | MtrunA17_Chr6g0451531 | 25.000 | 356 | 229 | 12 | 271 | 608 | 213 | 548 | 3.32e-22 | 100 |
| Msa0705860 | MtrunA17_Chr6g0451531 | 42.342 | 111 | 52 | 5 | 106 | 209 | 110 | 215 | 1.08e-14 | 77.4 |
| Msa0705860 | MtrunA17_Chr3g0107671 | 23.810 | 357 | 232 | 11 | 271 | 608 | 211 | 546 | 1.60e-19 | 92.8 |
| Msa0705860 | MtrunA17_Chr3g0107671 | 45.882 | 85 | 40 | 3 | 129 | 212 | 130 | 209 | 9.96e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705860 | AT3G52430.1 | 38.576 | 604 | 278 | 13 | 9 | 608 | 6 | 520 | 3.48e-121 | 370 |
| Msa0705860 | AT3G48080.1 | 26.230 | 549 | 317 | 21 | 127 | 626 | 115 | 624 | 4.65e-43 | 164 |
| Msa0705860 | AT3G48090.2 | 28.074 | 488 | 279 | 15 | 127 | 570 | 7 | 466 | 8.36e-43 | 162 |
| Msa0705860 | AT3G48090.1 | 28.074 | 488 | 279 | 15 | 127 | 570 | 115 | 574 | 2.23e-42 | 162 |
| Msa0705860 | AT5G14930.2 | 25.215 | 349 | 205 | 12 | 270 | 608 | 212 | 514 | 5.78e-24 | 106 |
| Msa0705860 | AT5G14930.2 | 37.168 | 113 | 62 | 4 | 98 | 206 | 108 | 215 | 1.47e-11 | 67.8 |
| Msa0705860 | AT5G14930.3 | 35.833 | 120 | 68 | 4 | 91 | 206 | 101 | 215 | 2.67e-11 | 64.7 |
Find 150 sgRNAs with CRISPR-Local
Find 419 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACACAAGATTCATGTTTC+TGG | 0.130571 | 4_4:+78685319 | Msa0705860:CDS |
| CGCAGACCCATTTGGCTCTT+TGG | 0.187191 | 4_4:-78685104 | None:intergenic |
| CACTGCTGTATTGGATTCTT+TGG | 0.212736 | 4_4:+78683966 | Msa0705860:CDS |
| TTGTTCCTTAGTACTTAATT+TGG | 0.218158 | 4_4:+78685604 | Msa0705860:exon |
| CTCTGTGTGTTAAGGCCTTA+AGG | 0.227073 | 4_4:+78685741 | Msa0705860:three_prime_UTR |
| TGCTGACTTCAAACATTCTT+TGG | 0.237811 | 4_4:-78684818 | None:intergenic |
| TTGGAAACTGCAACACAAAA+TGG | 0.258094 | 4_4:+78683985 | Msa0705860:CDS |
| TTCACAATTCTATAAGCTTT+TGG | 0.268203 | 4_4:+78685128 | Msa0705860:CDS |
| GCTGCAAGCTTTCCATATTC+TGG | 0.269484 | 4_4:-78683910 | None:intergenic |
| GTTAGTTAATAAGCTGTCTT+TGG | 0.269951 | 4_4:+78684185 | Msa0705860:CDS |
| TAGCATCTCTCTGCACTCTT+TGG | 0.276065 | 4_4:+78683647 | Msa0705860:CDS |
| TAAATTTCCTGCTTCAGTTT+TGG | 0.280453 | 4_4:+78683869 | Msa0705860:CDS |
| GAATTGGCCATTCAATCTTC+TGG | 0.294919 | 4_4:+78684273 | Msa0705860:CDS |
| CATCGAGTTGATTCAAAATA+AGG | 0.297856 | 4_4:+78685449 | Msa0705860:CDS |
| CCAAAAGGATGAAACAAAAT+TGG | 0.300071 | 4_4:-78684030 | None:intergenic |
| ATCTTCTGGTTTAGCAAATC+AGG | 0.300186 | 4_4:+78684287 | Msa0705860:CDS |
| TCCATGAATTCACCAGAATA+TGG | 0.306371 | 4_4:+78683898 | Msa0705860:CDS |
| GTTACAAACTCGCTAGATTC+TGG | 0.311709 | 4_4:+78685031 | Msa0705860:CDS |
| TCTGTGTGTTAAGGCCTTAA+GGG | 0.322816 | 4_4:+78685742 | Msa0705860:three_prime_UTR |
| AATTATATTAAGTGTTTGTT+TGG | 0.333196 | 4_4:+78685779 | Msa0705860:three_prime_UTR |
| GATTTCTACGCCACTGTTGC+CGG | 0.333614 | 4_4:+78678691 | Msa0705860:CDS |
| TCCATATTCTGGTGAATTCA+TGG | 0.335110 | 4_4:-78683899 | None:intergenic |
| GAGGAAACTTGCATTTATAA+AGG | 0.338108 | 4_4:-78685721 | None:intergenic |
| GGAGGTGTCTATTGATGTTC+TGG | 0.338679 | 4_4:+78685470 | Msa0705860:CDS |
| CAGAGGTTTCCTCAACAGTT+TGG | 0.355585 | 4_4:+78685561 | Msa0705860:CDS |
| CCAGTAATGTGCATCACTTT+TGG | 0.357234 | 4_4:+78683706 | Msa0705860:CDS |
| CCAAAAGTGATGCACATTAC+TGG | 0.369715 | 4_4:-78683706 | None:intergenic |
| ATTGAGGAACATTTGAAGTA+TGG | 0.371973 | 4_4:+78684159 | Msa0705860:CDS |
| AACACAAGATTCATGTTTCT+GGG | 0.376704 | 4_4:+78685320 | Msa0705860:CDS |
| ATGTTACCATTTCAGGTGTT+GGG | 0.393313 | 4_4:+78683562 | Msa0705860:intron |
| ACAACCTTGGCTAAGGATAA+TGG | 0.399983 | 4_4:-78684883 | None:intergenic |
| GCAAGGGAAGCATTTAGAAA+AGG | 0.410838 | 4_4:+78685182 | Msa0705860:CDS |
| TGAGAAGTGTGAGGTGTAAT+AGG | 0.412303 | 4_4:-78683844 | None:intergenic |
| ATAGGTGCAAATAGCAATCT+TGG | 0.413192 | 4_4:-78683826 | None:intergenic |
| TGATAAACAAGATGATCAAA+TGG | 0.416330 | 4_4:+78684945 | Msa0705860:CDS |
| TTGAAGTCAGCAAGGAGAAT+TGG | 0.417825 | 4_4:+78684829 | Msa0705860:CDS |
| AATTAATGACAACACCCTTA+AGG | 0.420845 | 4_4:-78685756 | None:intergenic |
| AGCTTTCTCCGGCGTTCAAA+TGG | 0.431375 | 4_4:+78678802 | Msa0705860:CDS |
| GTGATCACTGGCCATTCCAT+TGG | 0.434181 | 4_4:+78683616 | Msa0705860:CDS |
| GACTTCAAACATTCTTTGGC+TGG | 0.437850 | 4_4:-78684814 | None:intergenic |
| AGTTTGGACGATTCCTTGAC+GGG | 0.438080 | 4_4:+78685577 | Msa0705860:CDS |
| CCGGCGTTCAAATGGCCGGC+GGG | 0.439468 | 4_4:+78678810 | Msa0705860:CDS |
| TGAATCCAAATTAAGTACTA+AGG | 0.440708 | 4_4:-78685609 | None:intergenic |
| TGTTCCTCAATACTATTAGT+TGG | 0.441607 | 4_4:-78684147 | None:intergenic |
| CTATGAGGCAGGGCTTGAAT+TGG | 0.443387 | 4_4:+78684257 | Msa0705860:CDS |
| TATTTGTTTGTTTCAGAAGA+AGG | 0.444677 | 4_4:+78684057 | Msa0705860:CDS |
| CCTGCCTCATAGCTTGAGTT+AGG | 0.446400 | 4_4:-78684246 | None:intergenic |
| CAAGTTTCCTCTGTGTGTTA+AGG | 0.447195 | 4_4:+78685733 | Msa0705860:three_prime_UTR |
| TGAAGTTTCGTTTGCAGCCA+TGG | 0.448391 | 4_4:-78678454 | None:intergenic |
| TGCTAAACCAGAAGATTGAA+TGG | 0.450222 | 4_4:-78684280 | None:intergenic |
| AATAAGAAGAACACTATGCT+TGG | 0.452445 | 4_4:+78684216 | Msa0705860:CDS |
| TTACAAACTCGCTAGATTCT+GGG | 0.453899 | 4_4:+78685032 | Msa0705860:CDS |
| CGCCACTGTTGCCGGAGTCA+TGG | 0.457450 | 4_4:+78678699 | Msa0705860:CDS |
| CTTTGACCAAAGAGCCAAAT+GGG | 0.467650 | 4_4:+78685098 | Msa0705860:CDS |
| CAAGGGAAGCATTTAGAAAA+GGG | 0.469125 | 4_4:+78685183 | Msa0705860:CDS |
| GAGGTTGACGGCTGAGGCGT+TGG | 0.469518 | 4_4:-78678738 | None:intergenic |
| GGCGTTCAAATGGCCGGCGG+GGG | 0.470945 | 4_4:+78678812 | Msa0705860:CDS |
| GAAGCAAGGGATTGGTTGAA+TGG | 0.473961 | 4_4:+78685354 | Msa0705860:CDS |
| GTTTGAGAGCAGTGAGATGC+TGG | 0.474417 | 4_4:+78678658 | Msa0705860:CDS |
| GTGGAGAAGAAGAACGAGTA+AGG | 0.474768 | 4_4:-78678399 | None:intergenic |
| CACAAAACTGCGGAGGTTGA+CGG | 0.478645 | 4_4:-78678750 | None:intergenic |
| TTGTGAAGCGCAGACCCATT+TGG | 0.479246 | 4_4:-78685112 | None:intergenic |
| TGAGTTGTTCACTGCTGTAT+TGG | 0.481450 | 4_4:+78683957 | Msa0705860:CDS |
| TTCTCCGGCGTTCAAATGGC+CGG | 0.487074 | 4_4:+78678806 | Msa0705860:CDS |
| AAATAGAATTGTACAAAAGT+TGG | 0.490647 | 4_4:+78684920 | Msa0705860:CDS |
| CCTAACTCAAGCTATGAGGC+AGG | 0.491877 | 4_4:+78684246 | Msa0705860:CDS |
| AGGATGAAGAGATGGATTTG+AGG | 0.493288 | 4_4:-78683681 | None:intergenic |
| AATGATTTGTTACCAAGTAA+TGG | 0.494546 | 4_4:-78683733 | None:intergenic |
| CAGTTTGGACGATTCCTTGA+CGG | 0.494983 | 4_4:+78685576 | Msa0705860:CDS |
| ATCCCGGAGTGAACCTTCAC+CGG | 0.500741 | 4_4:-78678917 | None:intergenic |
| GTTGACTTCCATGTGTACTT+TGG | 0.507093 | 4_4:-78685001 | None:intergenic |
| GGAATTCGAGTTACAGTACA+TGG | 0.507318 | 4_4:+78685496 | Msa0705860:CDS |
| AAATTGGGGTCTTTGTCTTG+TGG | 0.510453 | 4_4:-78678418 | None:intergenic |
| TTAGAAAAGGGTCATTACAT+AGG | 0.510656 | 4_4:+78685195 | Msa0705860:CDS |
| ACTGCGGAGGTTGACGGCTG+AGG | 0.515153 | 4_4:-78678744 | None:intergenic |
| TAACAAGTTGGATACATTGT+GGG | 0.518232 | 4_4:+78685398 | Msa0705860:CDS |
| ACAAACAAATAGCTTCCAAA+AGG | 0.522218 | 4_4:-78684045 | None:intergenic |
| ATAAGAAGAACACTATGCTT+GGG | 0.524144 | 4_4:+78684217 | Msa0705860:CDS |
| GAAAGGTACAACCTTGGCTA+AGG | 0.525581 | 4_4:-78684890 | None:intergenic |
| AGTGATGCACATTACTGGTA+AGG | 0.527882 | 4_4:-78683701 | None:intergenic |
| AAAATGAGTTATTTAGCAGA+AGG | 0.529404 | 4_4:-78685677 | None:intergenic |
| GATAAACAAGATGATCAAAT+GGG | 0.529969 | 4_4:+78684946 | Msa0705860:CDS |
| ATCACTGGCCATTCCATTGG+AGG | 0.534637 | 4_4:+78683619 | Msa0705860:CDS |
| CTTTCCAACGTTCTCCAACT+CGG | 0.535262 | 4_4:-78678842 | None:intergenic |
| ACAAAATCTCTTGTGATCAC+TGG | 0.538265 | 4_4:+78683604 | Msa0705860:CDS |
| AAGAATAGAGAAGTTACTAT+TGG | 0.539104 | 4_4:+78685261 | Msa0705860:CDS |
| GTCGTGTATGTAGCTTTCTC+CGG | 0.540805 | 4_4:+78678791 | Msa0705860:CDS |
| GAATAAGGAAGAGGAGGAGC+CGG | 0.542802 | 4_4:+78678898 | Msa0705860:CDS |
| AGCCGGTGAAGGTTCACTCC+GGG | 0.543118 | 4_4:+78678915 | Msa0705860:CDS |
| AGAAGCGCCAAAACTGAAGC+AGG | 0.545207 | 4_4:-78683876 | None:intergenic |
| TTCTCCAACTAATAGTATTG+AGG | 0.547084 | 4_4:+78684143 | Msa0705860:CDS |
| CATTCCTAACTCAAGCTATG+AGG | 0.547551 | 4_4:+78684242 | Msa0705860:CDS |
| TGAAAGAGACACTAACAAGT+TGG | 0.548762 | 4_4:+78685386 | Msa0705860:CDS |
| GGAAGAGGAGGAGCCGGTGA+AGG | 0.549163 | 4_4:+78678904 | Msa0705860:CDS |
| ATAGCTGACTATTATAAGCA+AGG | 0.553105 | 4_4:+78685165 | Msa0705860:CDS |
| ACTTTGACCAAAGAGCCAAA+TGG | 0.553587 | 4_4:+78685097 | Msa0705860:CDS |
| CTCCATGACTCCGGCAACAG+TGG | 0.554285 | 4_4:-78678701 | None:intergenic |
| GGGCTAAAGTTGAAGAAGCA+AGG | 0.559451 | 4_4:+78685340 | Msa0705860:CDS |
| CGGCGTTCAAATGGCCGGCG+GGG | 0.560031 | 4_4:+78678811 | Msa0705860:CDS |
| TACTGGTAAGGATGAAGAGA+TGG | 0.560874 | 4_4:-78683689 | None:intergenic |
| GACGCGTCGGAATAAGGAAG+AGG | 0.563109 | 4_4:+78678889 | Msa0705860:CDS |
| TATGACACATTCAAAACAAG+AGG | 0.563778 | 4_4:+78684973 | Msa0705860:CDS |
| AAGTTGAAGAAGCAAGGGAT+TGG | 0.565472 | 4_4:+78685346 | Msa0705860:CDS |
| ATTTAAGAAAATTAAAACCA+TGG | 0.565642 | 4_4:+78678437 | Msa0705860:exon |
| AATTCTATTTGGGCTCTGAA+AGG | 0.568089 | 4_4:-78684907 | None:intergenic |
| GGCTAAAGTTGAAGAAGCAA+GGG | 0.572028 | 4_4:+78685341 | Msa0705860:CDS |
| TAGCTGACTATTATAAGCAA+GGG | 0.576347 | 4_4:+78685166 | Msa0705860:CDS |
| GGCTCTGAAAGGTACAACCT+TGG | 0.576657 | 4_4:-78684896 | None:intergenic |
| TCCGGCGTTCAAATGGCCGG+CGG | 0.577280 | 4_4:+78678809 | Msa0705860:CDS |
| TTTCAACTCAATCCAAAACC+AGG | 0.577607 | 4_4:+78678961 | Msa0705860:CDS |
| TGTCTATTGATGTTCTGGCT+AGG | 0.577873 | 4_4:+78685475 | Msa0705860:CDS |
| CTATAGCTCCTCCAATGGAA+TGG | 0.580997 | 4_4:-78683627 | None:intergenic |
| AGAAGAAGGTGCTTTATGTG+TGG | 0.588828 | 4_4:+78684071 | Msa0705860:CDS |
| AGAATCTAGCGAGTTTGTAA+CGG | 0.599056 | 4_4:-78685029 | None:intergenic |
| GAGCCGGTGAAGGTTCACTC+CGG | 0.599232 | 4_4:+78678914 | Msa0705860:CDS |
| TGGAGAACGTTGGAAAGCAT+CGG | 0.600726 | 4_4:+78678848 | Msa0705860:CDS |
| CCCGCCGGCCATTTGAACGC+CGG | 0.603974 | 4_4:-78678810 | None:intergenic |
| AGGAATCGTCCAAACTGTTG+AGG | 0.608499 | 4_4:-78685570 | None:intergenic |
| GCTCTTTGGTCAAAGTCATG+TGG | 0.609036 | 4_4:-78685090 | None:intergenic |
| CCTACCATTATCCTTAGCCA+AGG | 0.611121 | 4_4:+78684879 | Msa0705860:CDS |
| CTGCACATCCTCCATGACTC+CGG | 0.611145 | 4_4:-78678710 | None:intergenic |
| TAATAGTCAGCTATATCAAG+TGG | 0.612422 | 4_4:-78685156 | None:intergenic |
| AGAAAAGAGATTCAACATCC+CGG | 0.615019 | 4_4:-78678933 | None:intergenic |
| AAGGAACAACTTCCCCGTCA+AGG | 0.619923 | 4_4:-78685590 | None:intergenic |
| AACAAGTTGGATACATTGTG+GGG | 0.621080 | 4_4:+78685399 | Msa0705860:CDS |
| GCGTCGGAATAAGGAAGAGG+AGG | 0.625973 | 4_4:+78678892 | Msa0705860:CDS |
| GTCATGGAGGATGTGCAGCA+AGG | 0.626129 | 4_4:+78678715 | Msa0705860:CDS |
| CGAGTTGATTCAAAATAAGG+AGG | 0.626279 | 4_4:+78685452 | Msa0705860:CDS |
| CTAACAAGTTGGATACATTG+TGG | 0.627756 | 4_4:+78685397 | Msa0705860:CDS |
| CTAACTCAAGCTATGAGGCA+GGG | 0.629931 | 4_4:+78684247 | Msa0705860:CDS |
| AGATGCTATAGCTCCTCCAA+TGG | 0.633855 | 4_4:-78683632 | None:intergenic |
| AAGAATGTTTGAAGTCAGCA+AGG | 0.636050 | 4_4:+78684821 | Msa0705860:CDS |
| AGGATCTGCCAAAGTACACA+TGG | 0.636828 | 4_4:+78684993 | Msa0705860:CDS |
| CCTTGGCTAAGGATAATGGT+AGG | 0.638007 | 4_4:-78684879 | None:intergenic |
| AGAACGTTGGAAAGCATCGG+TGG | 0.638822 | 4_4:+78678851 | Msa0705860:CDS |
| AATTGAGAGCAAATGTGCAG+AGG | 0.648949 | 4_4:+78685544 | Msa0705860:CDS |
| CACTGTTGCCGGAGTCATGG+AGG | 0.649979 | 4_4:+78678702 | Msa0705860:CDS |
| TAGGACATGGTAGAGCGAGA+AGG | 0.658016 | 4_4:+78685214 | Msa0705860:CDS |
| AAGGGTCATTACATAGGACA+TGG | 0.658297 | 4_4:+78685201 | Msa0705860:CDS |
| GGATCCGAGTTGGAGAACGT+TGG | 0.659368 | 4_4:+78678838 | Msa0705860:CDS |
| TTCGAGTTACAGTACATGGG+TGG | 0.663897 | 4_4:+78685500 | Msa0705860:CDS |
| TTCCGACGCGTCGAAAACAG+CGG | 0.681767 | 4_4:-78678878 | None:intergenic |
| GCTCCACCACAAAACTGCGG+AGG | 0.686039 | 4_4:-78678757 | None:intergenic |
| GAATTCGAGTTACAGTACAT+GGG | 0.701923 | 4_4:+78685497 | Msa0705860:CDS |
| AAATTTAGCTGAGAAGTGTG+AGG | 0.704372 | 4_4:-78683853 | None:intergenic |
| ACAAGTTGGATACATTGTGG+GGG | 0.704955 | 4_4:+78685400 | Msa0705860:CDS |
| ATCATCTTAATAATTGTGTG+TGG | 0.707897 | 4_4:-78684099 | None:intergenic |
| CTTAAGGCCTTAACACACAG+AGG | 0.709701 | 4_4:-78685740 | None:intergenic |
| CATGCTCCACCACAAAACTG+CGG | 0.743961 | 4_4:-78678760 | None:intergenic |
| GTTTGGACGATTCCTTGACG+GGG | 0.758706 | 4_4:+78685578 | Msa0705860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATTTTAAATGAATTGAA+AGG | - | chr4_4:78679046-78679065 | None:intergenic | 10.0% |
| !!! | AAATGTCTTTTATTTTTATT+AGG | + | chr4_4:78679687-78679706 | Msa0705860:intron | 10.0% |
| !!! | TTTCTTTTATCAATTATTAA+GGG | - | chr4_4:78680405-78680424 | None:intergenic | 10.0% |
| !!! | TTTTCTTTTATCAATTATTA+AGG | - | chr4_4:78680406-78680425 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTTAAGGAT+AGG | + | chr4_4:78680469-78680488 | Msa0705860:intron | 10.0% |
| !! | ATTTATGATTTAATCTATTA+TGG | + | chr4_4:78680906-78680925 | Msa0705860:intron | 10.0% |
| !! | GAATATATTTAAAAATTATG+CGG | + | chr4_4:78680928-78680947 | Msa0705860:intron | 10.0% |
| !! | AATATATTTAAAAATTATGC+GGG | + | chr4_4:78680929-78680948 | Msa0705860:intron | 10.0% |
| !! | TAGAATTAAAAAATAAATGT+TGG | + | chr4_4:78681267-78681286 | Msa0705860:intron | 10.0% |
| !!! | TTTTAATGTTATTTATATAC+TGG | + | chr4_4:78681411-78681430 | Msa0705860:intron | 10.0% |
| !! | AATATAAAACATTAAACTTA+AGG | - | chr4_4:78681462-78681481 | None:intergenic | 10.0% |
| !! | TTTATTATGAAATAGTAAAA+CGG | - | chr4_4:78681959-78681978 | None:intergenic | 10.0% |
| !!! | TTCTTTTTTTCTTTTTTTTA+AGG | - | chr4_4:78682210-78682229 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTGTTTTTGTA+AGG | - | chr4_4:78682531-78682550 | None:intergenic | 10.0% |
| !!! | CAAAATTAGTTTAAAATATT+TGG | - | chr4_4:78683169-78683188 | None:intergenic | 10.0% |
| !!! | TTTTAAAATCACTTTTTTTT+TGG | + | chr4_4:78683192-78683211 | Msa0705860:intron | 10.0% |
| !!! | GTTTTAATTTTCTTAAATTG+GGG | - | chr4_4:78678435-78678454 | None:intergenic | 15.0% |
| !!! | GGTTTTAATTTTCTTAAATT+GGG | - | chr4_4:78678436-78678455 | None:intergenic | 15.0% |
| !!! | TGGTTTTAATTTTCTTAAAT+TGG | - | chr4_4:78678437-78678456 | None:intergenic | 15.0% |
| !! | ATTTAAGAAAATTAAAACCA+TGG | + | chr4_4:78678437-78678456 | Msa0705860:exon | 15.0% |
| !!! | TTTCATTTTATATTATTTGG+AGG | + | chr4_4:78679003-78679022 | Msa0705860:intron | 15.0% |
| !!! | TTATTTTATATTAAGAGAAG+AGG | - | chr4_4:78679144-78679163 | None:intergenic | 15.0% |
| !!! | GACATGTTAAATTTTAAATT+TGG | + | chr4_4:78679367-78679386 | Msa0705860:intron | 15.0% |
| !! | AAAAATAGAAAAAGATTCAT+AGG | - | chr4_4:78679429-78679448 | None:intergenic | 15.0% |
| !! | TCTAAATGTTACTAAAATAT+AGG | + | chr4_4:78679471-78679490 | Msa0705860:intron | 15.0% |
| !! | TAATTCACTTGATTAAATTA+GGG | - | chr4_4:78679600-78679619 | None:intergenic | 15.0% |
| !!! | CTTTTATTTTTATTAGGAAT+CGG | + | chr4_4:78679693-78679712 | Msa0705860:intron | 15.0% |
| !!! | TTTTCTTGGATATTTTTTTT+GGG | + | chr4_4:78679836-78679855 | Msa0705860:intron | 15.0% |
| !! | TAAACAAAATGATTTATGTT+TGG | + | chr4_4:78680045-78680064 | Msa0705860:intron | 15.0% |
| !!! | AACATGATTGTAAATTTTAT+AGG | + | chr4_4:78680439-78680458 | Msa0705860:intron | 15.0% |
| !!! | TTTTTTGCATTTTTAAAAGT+TGG | + | chr4_4:78680574-78680593 | Msa0705860:intron | 15.0% |
| !!! | CAATTTTCTTAAAAAAATAG+CGG | - | chr4_4:78680984-78681003 | None:intergenic | 15.0% |
| !! | ACTCTATAAAATAAACATAA+AGG | - | chr4_4:78681586-78681605 | None:intergenic | 15.0% |
| !!! | GTTACTAGTATAATATATTT+TGG | - | chr4_4:78682314-78682333 | None:intergenic | 15.0% |
| !! | AAAAAAGATACTTCTATTAA+GGG | - | chr4_4:78682503-78682522 | None:intergenic | 15.0% |
| !! | CTTTAAATTAGAATATTCTT+TGG | + | chr4_4:78683115-78683134 | Msa0705860:intron | 15.0% |
| !!! | TTTTTTCATTACATTCAAAT+TGG | + | chr4_4:78684394-78684413 | Msa0705860:intron | 15.0% |
| !!! | TTTTTCATTACATTCAAATT+GGG | + | chr4_4:78684395-78684414 | Msa0705860:intron | 15.0% |
| !! | TATTCACAATATTAATTAAG+TGG | - | chr4_4:78684482-78684501 | None:intergenic | 15.0% |
| !! | AATTATATTAAGTGTTTGTT+TGG | + | chr4_4:78685779-78685798 | Msa0705860:three_prime_UTR | 15.0% |
| !! | AAAAATGAAAAAAACAAACC+TGG | - | chr4_4:78678982-78679001 | None:intergenic | 20.0% |
| !!! | ATTGTTTGTCATTTTGTTTT+TGG | + | chr4_4:78679223-78679242 | Msa0705860:intron | 20.0% |
| !! | TTAGTAACATTTAGATTCAT+AGG | - | chr4_4:78679466-78679485 | None:intergenic | 20.0% |
| !! | ATGTACGATAATATACATTT+AGG | - | chr4_4:78679507-78679526 | None:intergenic | 20.0% |
| !! | CTAATTCACTTGATTAAATT+AGG | - | chr4_4:78679601-78679620 | None:intergenic | 20.0% |
| !! | AAAAAAATATCCAAGAAAAG+AGG | - | chr4_4:78679835-78679854 | None:intergenic | 20.0% |
| !!! | CTTTTCTTGGATATTTTTTT+TGG | + | chr4_4:78679835-78679854 | Msa0705860:intron | 20.0% |
| !! | TAAAGAATGAGAATTGATAA+AGG | + | chr4_4:78680135-78680154 | Msa0705860:intron | 20.0% |
| !! | AAAGAATGAGAATTGATAAA+GGG | + | chr4_4:78680136-78680155 | Msa0705860:intron | 20.0% |
| !! | TTGATAAAAGAAAACACTAA+TGG | + | chr4_4:78680412-78680431 | Msa0705860:intron | 20.0% |
| !! | GTATGTAGTTATAAAGAAAA+GGG | - | chr4_4:78681101-78681120 | None:intergenic | 20.0% |
| !! | TGTATGTAGTTATAAAGAAA+AGG | - | chr4_4:78681102-78681121 | None:intergenic | 20.0% |
| !!! | TGAAACTATCTTTCTTTTTT+AGG | + | chr4_4:78681164-78681183 | Msa0705860:intron | 20.0% |
| !!! | GAAACTATCTTTCTTTTTTA+GGG | + | chr4_4:78681165-78681184 | Msa0705860:intron | 20.0% |
| !!! | TCAGATAGTACATTATTTTA+AGG | + | chr4_4:78681198-78681217 | Msa0705860:intron | 20.0% |
| !! | ATAAAACATTAAACTTAAGG+TGG | - | chr4_4:78681459-78681478 | None:intergenic | 20.0% |
| !! | TAGCAAATTAAACATATATG+TGG | + | chr4_4:78681605-78681624 | Msa0705860:intron | 20.0% |
| !! | ATTATCTAATATCTACTTGA+TGG | - | chr4_4:78682180-78682199 | None:intergenic | 20.0% |
| !!! | TGATATGATAAATAGTTTTC+AGG | + | chr4_4:78682474-78682493 | Msa0705860:intron | 20.0% |
| !! | CAAAAAAGATACTTCTATTA+AGG | - | chr4_4:78682504-78682523 | None:intergenic | 20.0% |
| !! | ATTTGTATTTCTCCATATAT+GGG | - | chr4_4:78682828-78682847 | None:intergenic | 20.0% |
| !! | TATTTGTATTTCTCCATATA+TGG | - | chr4_4:78682829-78682848 | None:intergenic | 20.0% |
| !! | TAGGTTATTATTAACATTCT+AGG | - | chr4_4:78683507-78683526 | None:intergenic | 20.0% |
| !! | AAAATTTATGTTACCATTTC+AGG | + | chr4_4:78683555-78683574 | Msa0705860:intron | 20.0% |
| !!! | ACAATTATGATTTAAAACCT+TGG | - | chr4_4:78684439-78684458 | None:intergenic | 20.0% |
| !!! | AAGGTTTTAAATCATAATTG+TGG | + | chr4_4:78684438-78684457 | Msa0705860:intron | 20.0% |
| !!! | ACTTTTGTACAATTCTATTT+GGG | - | chr4_4:78684920-78684939 | None:intergenic | 20.0% |
| !!! | AACTTTTGTACAATTCTATT+TGG | - | chr4_4:78684921-78684940 | None:intergenic | 20.0% |
| !! | AAATAGAATTGTACAAAAGT+TGG | + | chr4_4:78684920-78684939 | Msa0705860:CDS | 20.0% |
| ! | TTTGAAAATTAGTTAGTGAG+TGG | - | chr4_4:78678504-78678523 | None:intergenic | 25.0% |
| !!! | TTTTTGAAGCATTCTGAATT+AGG | + | chr4_4:78679198-78679217 | Msa0705860:intron | 25.0% |
| ! | AATTCACACACTCAAATTAT+TGG | + | chr4_4:78679324-78679343 | Msa0705860:intron | 25.0% |
| ! | TAAGTTAATTCGTCTTTAAG+CGG | - | chr4_4:78679643-78679662 | None:intergenic | 25.0% |
| !! | GACATTTAGAATTCGAAATT+CGG | - | chr4_4:78679674-78679693 | None:intergenic | 25.0% |
| !! | TGAGAGAATTGATTTATGTT+TGG | + | chr4_4:78680001-78680020 | Msa0705860:intron | 25.0% |
| ! | ACTAAAATAGACATAGCTAA+AGG | + | chr4_4:78680104-78680123 | Msa0705860:intron | 25.0% |
| ! | TAAACATAAAGGACAACTTA+AGG | - | chr4_4:78681575-78681594 | None:intergenic | 25.0% |
| ! | TATATGTGGTAGACATTTAA+TGG | + | chr4_4:78681619-78681638 | Msa0705860:intron | 25.0% |
| !!! | AGTTTAAGTCCTTTTAAAGA+TGG | + | chr4_4:78681673-78681692 | Msa0705860:intron | 25.0% |
| !! | ATGGGTTTGAATTTTTATTG+GGG | - | chr4_4:78682035-78682054 | None:intergenic | 25.0% |
| !!! | GATGGGTTTGAATTTTTATT+GGG | - | chr4_4:78682036-78682055 | None:intergenic | 25.0% |
| !!! | TGATGGGTTTGAATTTTTAT+TGG | - | chr4_4:78682037-78682056 | None:intergenic | 25.0% |
| ! | TGTGGAAAGAAAAAAATGAT+GGG | - | chr4_4:78682053-78682072 | None:intergenic | 25.0% |
| ! | TTGTGGAAAGAAAAAAATGA+TGG | - | chr4_4:78682054-78682073 | None:intergenic | 25.0% |
| !!! | TCATTTTGATAATGGAATCT+AGG | - | chr4_4:78682145-78682164 | None:intergenic | 25.0% |
| !!! | AACTGCTATCATTTTGATAA+TGG | - | chr4_4:78682153-78682172 | None:intergenic | 25.0% |
| ! | CTCTTGAATCATTGAATATA+AGG | - | chr4_4:78682671-78682690 | None:intergenic | 25.0% |
| ! | TTTGTATTTCTCCATATATG+GGG | - | chr4_4:78682827-78682846 | None:intergenic | 25.0% |
| !! | TATGGTTGATGTATGTATAT+GGG | - | chr4_4:78682895-78682914 | None:intergenic | 25.0% |
| !! | GTTGATTCAAAATGAATTCT+CGG | - | chr4_4:78682959-78682978 | None:intergenic | 25.0% |
| !! | ATTCTAATTTAAAGCTGAGA+TGG | - | chr4_4:78683109-78683128 | None:intergenic | 25.0% |
| !! | TTATTTATGTGTTGGTCAAT+AGG | - | chr4_4:78683288-78683307 | None:intergenic | 25.0% |
| ! | TTTCCTGTTTATTTATGTGT+TGG | - | chr4_4:78683296-78683315 | None:intergenic | 25.0% |
| ! | ACATAAATAAACAGGAAAGA+TGG | + | chr4_4:78683298-78683317 | Msa0705860:intron | 25.0% |
| ! | ACTAACAAATGAAAAACTAG+TGG | - | chr4_4:78683436-78683455 | None:intergenic | 25.0% |
| !!! | AATGATTTGTTACCAAGTAA+TGG | - | chr4_4:78683736-78683755 | None:intergenic | 25.0% |
| ! | TATTTGTTTGTTTCAGAAGA+AGG | + | chr4_4:78684057-78684076 | Msa0705860:CDS | 25.0% |
| ! | ATCATCTTAATAATTGTGTG+TGG | - | chr4_4:78684102-78684121 | None:intergenic | 25.0% |
| ! | TGATAAACAAGATGATCAAA+TGG | + | chr4_4:78684945-78684964 | Msa0705860:CDS | 25.0% |
| ! | GATAAACAAGATGATCAAAT+GGG | + | chr4_4:78684946-78684965 | Msa0705860:CDS | 25.0% |
| !! | TTCACAATTCTATAAGCTTT+TGG | + | chr4_4:78685128-78685147 | Msa0705860:CDS | 25.0% |
| ! | AAGAATAGAGAAGTTACTAT+TGG | + | chr4_4:78685261-78685280 | Msa0705860:CDS | 25.0% |
| ! | TTGTTCCTTAGTACTTAATT+TGG | + | chr4_4:78685604-78685623 | Msa0705860:exon | 25.0% |
| ! | TGAATCCAAATTAAGTACTA+AGG | - | chr4_4:78685612-78685631 | None:intergenic | 25.0% |
| ! | AAAATGAGTTATTTAGCAGA+AGG | - | chr4_4:78685680-78685699 | None:intergenic | 25.0% |
| AATGAATGAGTGAGTACTTA+CGG | - | chr4_4:78678480-78678499 | None:intergenic | 30.0% | |
| ! | TTGTCTTTTTGACAAAGCTA+AGG | + | chr4_4:78678577-78678596 | Msa0705860:intron | 30.0% |
| !!! | ATGTTGTTTTTTCTTGTGTC+AGG | + | chr4_4:78678636-78678655 | Msa0705860:intron | 30.0% |
| !!! | GTTTTGGATTGAGTTGAAAA+GGG | - | chr4_4:78678960-78678979 | None:intergenic | 30.0% |
| ! | GAAAAAAACAAACCTGGTTT+TGG | - | chr4_4:78678976-78678995 | None:intergenic | 30.0% |
| TAATTTGAGTGTGTGAATTC+AGG | - | chr4_4:78679323-78679342 | None:intergenic | 30.0% | |
| ACTCAAATTATTGGAAACAG+TGG | + | chr4_4:78679333-78679352 | Msa0705860:intron | 30.0% | |
| AATGTTTAAGTACGAGATAG+AGG | + | chr4_4:78679553-78679572 | Msa0705860:intron | 30.0% | |
| ! | TGTTAATTGTCCTCTTTTCT+TGG | + | chr4_4:78679822-78679841 | Msa0705860:intron | 30.0% |
| ATATTCAAAGCTGAACCAAA+CGG | - | chr4_4:78679927-78679946 | None:intergenic | 30.0% | |
| GCAATTATGTAGAATTGCTT+TGG | + | chr4_4:78680070-78680089 | Msa0705860:intron | 30.0% | |
| !!! | TTTTTGGCTAGAATTGCTTT+TGG | + | chr4_4:78680322-78680341 | Msa0705860:intron | 30.0% |
| !! | CACTGTAGAGAATTGATTTT+GGG | + | chr4_4:78680345-78680364 | Msa0705860:intron | 30.0% |
| TCAATTATTAAGGGTCTGTT+TGG | - | chr4_4:78680396-78680415 | None:intergenic | 30.0% | |
| AACTAATGCTCCTATCTTAA+CGG | - | chr4_4:78680510-78680529 | None:intergenic | 30.0% | |
| ! | ATAAAAAAGTGTGAGTGTGA+CGG | - | chr4_4:78680767-78680786 | None:intergenic | 30.0% |
| !!! | TCACACTTTTTTATCAGTGT+TGG | + | chr4_4:78680773-78680792 | Msa0705860:intron | 30.0% |
| ATTATGTTAAACCTCACCAA+TGG | - | chr4_4:78681077-78681096 | None:intergenic | 30.0% | |
| TTCATGACATGTTAATGAAC+CGG | - | chr4_4:78681148-78681167 | None:intergenic | 30.0% | |
| TTTCTTATCTTGTGCTCTTA+AGG | + | chr4_4:78681363-78681382 | Msa0705860:intron | 30.0% | |
| ! | TGTATTGTGTTTTGTCATGA+TGG | - | chr4_4:78681515-78681534 | None:intergenic | 30.0% |
| !!! | TTGGATTTTAGTTGAGCTAA+TGG | - | chr4_4:78681550-78681569 | None:intergenic | 30.0% |
| CTCTTACAACCATCTTTAAA+AGG | - | chr4_4:78681685-78681704 | None:intergenic | 30.0% | |
| TTTGAACACACGTACATAAA+TGG | - | chr4_4:78681820-78681839 | None:intergenic | 30.0% | |
| ATATATTAGCAGTGTGAACA+TGG | + | chr4_4:78682008-78682027 | Msa0705860:intron | 30.0% | |
| ! | ATTGATTGTTAGCACTTTTG+TGG | - | chr4_4:78682071-78682090 | None:intergenic | 30.0% |
| ! | CATGTTTTATGCACTAATCA+AGG | - | chr4_4:78682100-78682119 | None:intergenic | 30.0% |
| ATCTAATATCTACTTGATGG+AGG | - | chr4_4:78682177-78682196 | None:intergenic | 30.0% | |
| ATAATGCCACAAACAAAGAT+GGG | + | chr4_4:78682248-78682267 | Msa0705860:intron | 30.0% | |
| TGAGAAGTAAACATAAGACT+TGG | + | chr4_4:78682774-78682793 | Msa0705860:intron | 30.0% | |
| TAAACATAAGACTTGGACAT+GGG | + | chr4_4:78682781-78682800 | Msa0705860:intron | 30.0% | |
| ! | ATGGTTGATGTATGTATATG+GGG | - | chr4_4:78682894-78682913 | None:intergenic | 30.0% |
| ! | GTATGGTTGATGTATGTATA+TGG | - | chr4_4:78682896-78682915 | None:intergenic | 30.0% |
| AAACTAGTATTCCTCACAAA+GGG | + | chr4_4:78682916-78682935 | Msa0705860:intron | 30.0% | |
| ! | ATATCACAATTTGAGACCTA+AGG | + | chr4_4:78683081-78683100 | Msa0705860:intron | 30.0% |
| TGACCAACACATAAATAAAC+AGG | + | chr4_4:78683290-78683309 | Msa0705860:intron | 30.0% | |
| ! | TAAATTTCCTGCTTCAGTTT+TGG | + | chr4_4:78683869-78683888 | Msa0705860:CDS | 30.0% |
| CCAAAAGGATGAAACAAAAT+TGG | - | chr4_4:78684033-78684052 | None:intergenic | 30.0% | |
| !! | CCAATTTTGTTTCATCCTTT+TGG | + | chr4_4:78684030-78684049 | Msa0705860:CDS | 30.0% |
| ACAAACAAATAGCTTCCAAA+AGG | - | chr4_4:78684048-78684067 | None:intergenic | 30.0% | |
| TTCTCCAACTAATAGTATTG+AGG | + | chr4_4:78684143-78684162 | Msa0705860:CDS | 30.0% | |
| TGTTCCTCAATACTATTAGT+TGG | - | chr4_4:78684150-78684169 | None:intergenic | 30.0% | |
| ! | ATTGAGGAACATTTGAAGTA+TGG | + | chr4_4:78684159-78684178 | Msa0705860:CDS | 30.0% |
| GTTAGTTAATAAGCTGTCTT+TGG | + | chr4_4:78684185-78684204 | Msa0705860:CDS | 30.0% | |
| AATAAGAAGAACACTATGCT+TGG | + | chr4_4:78684216-78684235 | Msa0705860:CDS | 30.0% | |
| ATAAGAAGAACACTATGCTT+GGG | + | chr4_4:78684217-78684236 | Msa0705860:CDS | 30.0% | |
| AAGCTATCTTGAGAAGAATA+TGG | - | chr4_4:78684568-78684587 | None:intergenic | 30.0% | |
| ACTAAGCGTTTATAGCATAA+GGG | - | chr4_4:78684687-78684706 | None:intergenic | 30.0% | |
| AACTAAGCGTTTATAGCATA+AGG | - | chr4_4:78684688-78684707 | None:intergenic | 30.0% | |
| CCTTCTTATAATTGAAGCTA+AGG | - | chr4_4:78684737-78684756 | None:intergenic | 30.0% | |
| CCTTAGCTTCAATTATAAGA+AGG | + | chr4_4:78684734-78684753 | Msa0705860:intron | 30.0% | |
| TATGACACATTCAAAACAAG+AGG | + | chr4_4:78684973-78684992 | Msa0705860:CDS | 30.0% | |
| TAATAGTCAGCTATATCAAG+TGG | - | chr4_4:78685159-78685178 | None:intergenic | 30.0% | |
| ATAGCTGACTATTATAAGCA+AGG | + | chr4_4:78685165-78685184 | Msa0705860:CDS | 30.0% | |
| TAGCTGACTATTATAAGCAA+GGG | + | chr4_4:78685166-78685185 | Msa0705860:CDS | 30.0% | |
| TTAGAAAAGGGTCATTACAT+AGG | + | chr4_4:78685195-78685214 | Msa0705860:CDS | 30.0% | |
| !! | GAAGGTATGAGATTTTTGAT+AGG | + | chr4_4:78685232-78685251 | Msa0705860:CDS | 30.0% |
| AACACAAGATTCATGTTTCT+GGG | + | chr4_4:78685320-78685339 | Msa0705860:CDS | 30.0% | |
| ! | TAACAAGTTGGATACATTGT+GGG | + | chr4_4:78685398-78685417 | Msa0705860:CDS | 30.0% |
| !!! | CTTATTTTGAATCAACTCGA+TGG | - | chr4_4:78685451-78685470 | None:intergenic | 30.0% |
| !! | CATCGAGTTGATTCAAAATA+AGG | + | chr4_4:78685449-78685468 | Msa0705860:CDS | 30.0% |
| GAGGAAACTTGCATTTATAA+AGG | - | chr4_4:78685724-78685743 | None:intergenic | 30.0% | |
| AATTAATGACAACACCCTTA+AGG | - | chr4_4:78685759-78685778 | None:intergenic | 30.0% | |
| AGAAAAGAGATTCAACATCC+CGG | - | chr4_4:78678936-78678955 | None:intergenic | 35.0% | |
| !!! | GGTTTTGGATTGAGTTGAAA+AGG | - | chr4_4:78678961-78678980 | None:intergenic | 35.0% |
| TTTCAACTCAATCCAAAACC+AGG | + | chr4_4:78678961-78678980 | Msa0705860:CDS | 35.0% | |
| ATCAAGTGAATTAGCTCAAC+TGG | + | chr4_4:78679607-78679626 | Msa0705860:intron | 35.0% | |
| !! | TGTCCACTTTTACCTGAAAT+AGG | + | chr4_4:78679739-78679758 | Msa0705860:intron | 35.0% |
| ! | TCTCCTATTTCAGGTAAAAG+TGG | - | chr4_4:78679745-78679764 | None:intergenic | 35.0% |
| TGTGTTAACTCTCCTATTTC+AGG | - | chr4_4:78679754-78679773 | None:intergenic | 35.0% | |
| CACTAACATCATCGTCATTA+TGG | + | chr4_4:78679783-78679802 | Msa0705860:intron | 35.0% | |
| ATTCTCTCATATGCTTGAGA+CGG | + | chr4_4:78679861-78679880 | Msa0705860:intron | 35.0% | |
| AAACCTATACACGTTGTTCA+AGG | + | chr4_4:78680198-78680217 | Msa0705860:intron | 35.0% | |
| ! | TTCTAGAAAAGCTAGAAGCT+AGG | + | chr4_4:78680229-78680248 | Msa0705860:intron | 35.0% |
| !! | TGAACCAAACACGTTGTTTT+TGG | + | chr4_4:78680306-78680325 | Msa0705860:intron | 35.0% |
| !! | GCACTGTAGAGAATTGATTT+TGG | + | chr4_4:78680344-78680363 | Msa0705860:intron | 35.0% |
| TATTAAGGGTCTGTTTGGTT+TGG | - | chr4_4:78680391-78680410 | None:intergenic | 35.0% | |
| ! | TTAACTAGTGCCGTTAAGAT+AGG | + | chr4_4:78680497-78680516 | Msa0705860:intron | 35.0% |
| TGCACGAACCTATCAAATTA+TGG | + | chr4_4:78680796-78680815 | Msa0705860:intron | 35.0% | |
| CCTGATCTCCATAATTTGAT+AGG | - | chr4_4:78680807-78680826 | None:intergenic | 35.0% | |
| CCTATCAAATTATGGAGATC+AGG | + | chr4_4:78680804-78680823 | Msa0705860:intron | 35.0% | |
| AGTAAGTAGAGATTGTCCAT+TGG | + | chr4_4:78681058-78681077 | Msa0705860:intron | 35.0% | |
| TTGCAAACTCCTCTAAATGT+CGG | + | chr4_4:78681483-78681502 | Msa0705860:intron | 35.0% | |
| TAAAGGACAACTTAAGGCAT+TGG | - | chr4_4:78681569-78681588 | None:intergenic | 35.0% | |
| ! | GTTTTATGCACTAATCAAGG+TGG | - | chr4_4:78682097-78682116 | None:intergenic | 35.0% |
| GATAATGCCACAAACAAAGA+TGG | + | chr4_4:78682247-78682266 | Msa0705860:intron | 35.0% | |
| ! | TGTCATTTCAAATCCCTATC+AGG | - | chr4_4:78682446-78682465 | None:intergenic | 35.0% |
| GTAAACATAAGACTTGGACA+TGG | + | chr4_4:78682780-78682799 | Msa0705860:intron | 35.0% | |
| TGCACAATTTACCCCATATA+TGG | + | chr4_4:78682813-78682832 | Msa0705860:intron | 35.0% | |
| ! | TGGTTGATGTATGTATATGG+GGG | - | chr4_4:78682893-78682912 | None:intergenic | 35.0% |
| ! | GTGAGGAATACTAGTTTGTA+TGG | - | chr4_4:78682913-78682932 | None:intergenic | 35.0% |
| CAAACTAGTATTCCTCACAA+AGG | + | chr4_4:78682915-78682934 | Msa0705860:intron | 35.0% | |
| ! | TATGTTACCATTTCAGGTGT+TGG | + | chr4_4:78683561-78683580 | Msa0705860:intron | 35.0% |
| ! | ATGTTACCATTTCAGGTGTT+GGG | + | chr4_4:78683562-78683581 | Msa0705860:intron | 35.0% |
| AATATACCCAACACCTGAAA+TGG | - | chr4_4:78683571-78683590 | None:intergenic | 35.0% | |
| ACAAAATCTCTTGTGATCAC+TGG | + | chr4_4:78683604-78683623 | Msa0705860:CDS | 35.0% | |
| !!! | ACTTTTGGTTCACCATTACT+TGG | + | chr4_4:78683721-78683740 | Msa0705860:CDS | 35.0% |
| !! | TTTTTCTCTGGAAATGGCTT+GGG | - | chr4_4:78683761-78683780 | None:intergenic | 35.0% |
| !! | ATTTTTCTCTGGAAATGGCT+TGG | - | chr4_4:78683762-78683781 | None:intergenic | 35.0% |
| AAGCCATTTCCAGAGAAAAA+TGG | + | chr4_4:78683761-78683780 | Msa0705860:CDS | 35.0% | |
| AGCCATTTCCAGAGAAAAAT+GGG | + | chr4_4:78683762-78683781 | Msa0705860:CDS | 35.0% | |
| ATAGGTGCAAATAGCAATCT+TGG | - | chr4_4:78683829-78683848 | None:intergenic | 35.0% | |
| ! | AAATTTAGCTGAGAAGTGTG+AGG | - | chr4_4:78683856-78683875 | None:intergenic | 35.0% |
| TCCATGAATTCACCAGAATA+TGG | + | chr4_4:78683898-78683917 | Msa0705860:CDS | 35.0% | |
| TCCATATTCTGGTGAATTCA+TGG | - | chr4_4:78683902-78683921 | None:intergenic | 35.0% | |
| TTGGAAACTGCAACACAAAA+TGG | + | chr4_4:78683985-78684004 | Msa0705860:CDS | 35.0% | |
| TGCTAAACCAGAAGATTGAA+TGG | - | chr4_4:78684283-78684302 | None:intergenic | 35.0% | |
| !! | ATCTTCTGGTTTAGCAAATC+AGG | + | chr4_4:78684287-78684306 | Msa0705860:CDS | 35.0% |
| GCTCTCACTAATATAATCCA+AGG | + | chr4_4:78684419-78684438 | Msa0705860:intron | 35.0% | |
| TATCAAATGTGCCTCAATTG+TGG | + | chr4_4:78684507-78684526 | Msa0705860:intron | 35.0% | |
| TACTGTATGATGTAACCAAC+AGG | + | chr4_4:78684777-78684796 | Msa0705860:intron | 35.0% | |
| !! | TGCTGACTTCAAACATTCTT+TGG | - | chr4_4:78684821-78684840 | None:intergenic | 35.0% |
| ! | AAGAATGTTTGAAGTCAGCA+AGG | + | chr4_4:78684821-78684840 | Msa0705860:CDS | 35.0% |
| !! | AATTCTATTTGGGCTCTGAA+AGG | - | chr4_4:78684910-78684929 | None:intergenic | 35.0% |
| AGAATCTAGCGAGTTTGTAA+CGG | - | chr4_4:78685032-78685051 | None:intergenic | 35.0% | |
| TTACAAACTCGCTAGATTCT+GGG | + | chr4_4:78685032-78685051 | Msa0705860:CDS | 35.0% | |
| !! | CAAGGGAAGCATTTAGAAAA+GGG | + | chr4_4:78685183-78685202 | Msa0705860:CDS | 35.0% |
| ! | GGTATGAGATTTTTGATAGG+TGG | + | chr4_4:78685235-78685254 | Msa0705860:CDS | 35.0% |
| ! | ATGAGATTTTTGATAGGTGG+TGG | + | chr4_4:78685238-78685257 | Msa0705860:CDS | 35.0% |
| CAACACAAGATTCATGTTTC+TGG | + | chr4_4:78685319-78685338 | Msa0705860:CDS | 35.0% | |
| TGAAAGAGACACTAACAAGT+TGG | + | chr4_4:78685386-78685405 | Msa0705860:CDS | 35.0% | |
| ! | CTAACAAGTTGGATACATTG+TGG | + | chr4_4:78685397-78685416 | Msa0705860:CDS | 35.0% |
| ! | AACAAGTTGGATACATTGTG+GGG | + | chr4_4:78685399-78685418 | Msa0705860:CDS | 35.0% |
| !! | CGAGTTGATTCAAAATAAGG+AGG | + | chr4_4:78685452-78685471 | Msa0705860:CDS | 35.0% |
| ! | GAATTCGAGTTACAGTACAT+GGG | + | chr4_4:78685497-78685516 | Msa0705860:CDS | 35.0% |
| AAATTGGGGTCTTTGTCTTG+TGG | - | chr4_4:78678421-78678440 | None:intergenic | 40.0% | |
| CAATTTCCACGAAAACTCTG+AGG | + | chr4_4:78678551-78678570 | Msa0705860:intron | 40.0% | |
| CATTCGTTATGTGAACATGC+TGG | + | chr4_4:78679277-78679296 | Msa0705860:intron | 40.0% | |
| AGGACAAAGCACGTAAAAAC+AGG | - | chr4_4:78679303-78679322 | None:intergenic | 40.0% | |
| GGAAACAGTGGAATCAAGAT+TGG | + | chr4_4:78679345-78679364 | Msa0705860:intron | 40.0% | |
| TCTCCTTGAACAACGTGTAT+AGG | - | chr4_4:78680204-78680223 | None:intergenic | 40.0% | |
| AGCTAGGATTTGTAGCTTCA+TGG | + | chr4_4:78680245-78680264 | Msa0705860:intron | 40.0% | |
| ! | GCTTCATGGAGAATTGCTTT+TGG | + | chr4_4:78680259-78680278 | Msa0705860:intron | 40.0% |
| !! | TCATGGAGAATTGCTTTTGG+AGG | + | chr4_4:78680262-78680281 | Msa0705860:intron | 40.0% |
| CTAGCCAAAAACAACGTGTT+TGG | - | chr4_4:78680313-78680332 | None:intergenic | 40.0% | |
| CTTAACGGCACTAGTTAACA+TGG | - | chr4_4:78680495-78680514 | None:intergenic | 40.0% | |
| ATGGAGATCAGGTGAAGAAA+AGG | + | chr4_4:78680815-78680834 | Msa0705860:intron | 40.0% | |
| CATGTTAATGAACCGGATCA+GGG | - | chr4_4:78681141-78681160 | None:intergenic | 40.0% | |
| ACATGTTAATGAACCGGATC+AGG | - | chr4_4:78681142-78681161 | None:intergenic | 40.0% | |
| AAACTTAAGGTGGTCCAGAT+GGG | - | chr4_4:78681449-78681468 | None:intergenic | 40.0% | |
| TAAACTTAAGGTGGTCCAGA+TGG | - | chr4_4:78681450-78681469 | None:intergenic | 40.0% | |
| TAGTGCATAAAACATGCCGT+TGG | + | chr4_4:78682104-78682123 | Msa0705860:intron | 40.0% | |
| AGTGCATAAAACATGCCGTT+GGG | + | chr4_4:78682105-78682124 | Msa0705860:intron | 40.0% | |
| CTAGTAACATCACTGAGTGA+TGG | + | chr4_4:78682326-78682345 | Msa0705860:intron | 40.0% | |
| TTTCAAATCCCTATCAGGTC+AGG | - | chr4_4:78682441-78682460 | None:intergenic | 40.0% | |
| TTAACGTGATGTGAGTCATG+TGG | - | chr4_4:78682582-78682601 | None:intergenic | 40.0% | |
| CAGCTGGTTAAGACAAAGTT+GGG | + | chr4_4:78682628-78682647 | Msa0705860:intron | 40.0% | |
| AGCTGGTTAAGACAAAGTTG+GGG | + | chr4_4:78682629-78682648 | Msa0705860:intron | 40.0% | |
| GTTAAGACAAAGTTGGGGAT+AGG | + | chr4_4:78682634-78682653 | Msa0705860:intron | 40.0% | |
| AAGGTTGTTGAAGCGGTAAA+GGG | - | chr4_4:78682866-78682885 | None:intergenic | 40.0% | |
| AAAGGTTGTTGAAGCGGTAA+AGG | - | chr4_4:78682867-78682886 | None:intergenic | 40.0% | |
| GTATGTATATGGGGGAGAAA+AGG | - | chr4_4:78682885-78682904 | None:intergenic | 40.0% | |
| !! | TATTCCTCACAAAGGGTGTT+TGG | + | chr4_4:78682923-78682942 | Msa0705860:intron | 40.0% |
| TAAAGCTGAGATGGTACCTT+AGG | - | chr4_4:78683100-78683119 | None:intergenic | 40.0% | |
| ! | AGGATGAAGAGATGGATTTG+AGG | - | chr4_4:78683684-78683703 | None:intergenic | 40.0% |
| TACTGGTAAGGATGAAGAGA+TGG | - | chr4_4:78683692-78683711 | None:intergenic | 40.0% | |
| AGTGATGCACATTACTGGTA+AGG | - | chr4_4:78683704-78683723 | None:intergenic | 40.0% | |
| CCAAAAGTGATGCACATTAC+TGG | - | chr4_4:78683709-78683728 | None:intergenic | 40.0% | |
| ! | CCAGTAATGTGCATCACTTT+TGG | + | chr4_4:78683706-78683725 | Msa0705860:CDS | 40.0% |
| GCCATTTCCAGAGAAAAATG+GGG | + | chr4_4:78683763-78683782 | Msa0705860:CDS | 40.0% | |
| !! | ACCCCATTTTTCTCTGGAAA+TGG | - | chr4_4:78683767-78683786 | None:intergenic | 40.0% |
| ATTTCCAGAGAAAAATGGGG+TGG | + | chr4_4:78683766-78683785 | Msa0705860:CDS | 40.0% | |
| !! | ATTTCCACCCCATTTTTCTC+TGG | - | chr4_4:78683773-78683792 | None:intergenic | 40.0% |
| ! | TGAGAAGTGTGAGGTGTAAT+AGG | - | chr4_4:78683847-78683866 | None:intergenic | 40.0% |
| TGAGTTGTTCACTGCTGTAT+TGG | + | chr4_4:78683957-78683976 | Msa0705860:CDS | 40.0% | |
| CACTGCTGTATTGGATTCTT+TGG | + | chr4_4:78683966-78683985 | Msa0705860:CDS | 40.0% | |
| !! | AGAAGAAGGTGCTTTATGTG+TGG | + | chr4_4:78684071-78684090 | Msa0705860:CDS | 40.0% |
| CATTCCTAACTCAAGCTATG+AGG | + | chr4_4:78684242-78684261 | Msa0705860:CDS | 40.0% | |
| GAATTGGCCATTCAATCTTC+TGG | + | chr4_4:78684273-78684292 | Msa0705860:CDS | 40.0% | |
| TTACAACACGACCACAATTG+AGG | - | chr4_4:78684521-78684540 | None:intergenic | 40.0% | |
| GACTTCAAACATTCTTTGGC+TGG | - | chr4_4:78684817-78684836 | None:intergenic | 40.0% | |
| TTGAAGTCAGCAAGGAGAAT+TGG | + | chr4_4:78684829-78684848 | Msa0705860:CDS | 40.0% | |
| ACAACCTTGGCTAAGGATAA+TGG | - | chr4_4:78684886-78684905 | None:intergenic | 40.0% | |
| ! | GTTGACTTCCATGTGTACTT+TGG | - | chr4_4:78685004-78685023 | None:intergenic | 40.0% |
| GTTACAAACTCGCTAGATTC+TGG | + | chr4_4:78685031-78685050 | Msa0705860:CDS | 40.0% | |
| ACTTTGACCAAAGAGCCAAA+TGG | + | chr4_4:78685097-78685116 | Msa0705860:CDS | 40.0% | |
| CTTTGACCAAAGAGCCAAAT+GGG | + | chr4_4:78685098-78685117 | Msa0705860:CDS | 40.0% | |
| !! | GCAAGGGAAGCATTTAGAAA+AGG | + | chr4_4:78685182-78685201 | Msa0705860:CDS | 40.0% |
| AAGGGTCATTACATAGGACA+TGG | + | chr4_4:78685201-78685220 | Msa0705860:CDS | 40.0% | |
| GGCTAAAGTTGAAGAAGCAA+GGG | + | chr4_4:78685341-78685360 | Msa0705860:CDS | 40.0% | |
| AAGTTGAAGAAGCAAGGGAT+TGG | + | chr4_4:78685346-78685365 | Msa0705860:CDS | 40.0% | |
| ! | ACAAGTTGGATACATTGTGG+GGG | + | chr4_4:78685400-78685419 | Msa0705860:CDS | 40.0% |
| ! | TGTCTATTGATGTTCTGGCT+AGG | + | chr4_4:78685475-78685494 | Msa0705860:CDS | 40.0% |
| ! | GGAATTCGAGTTACAGTACA+TGG | + | chr4_4:78685496-78685515 | Msa0705860:CDS | 40.0% |
| AATTGAGAGCAAATGTGCAG+AGG | + | chr4_4:78685544-78685563 | Msa0705860:CDS | 40.0% | |
| CAAGTTTCCTCTGTGTGTTA+AGG | + | chr4_4:78685733-78685752 | Msa0705860:three_prime_UTR | 40.0% | |
| TCTGTGTGTTAAGGCCTTAA+GGG | + | chr4_4:78685742-78685761 | Msa0705860:three_prime_UTR | 40.0% | |
| GTGGAGAAGAAGAACGAGTA+AGG | - | chr4_4:78678402-78678421 | None:intergenic | 45.0% | |
| TGAAGTTTCGTTTGCAGCCA+TGG | - | chr4_4:78678457-78678476 | None:intergenic | 45.0% | |
| ! | CAACAACCTCAGAGTTTTCG+TGG | - | chr4_4:78678560-78678579 | None:intergenic | 45.0% |
| !! | AGTTTTGTGGTGGAGCATGT+TGG | + | chr4_4:78678764-78678783 | Msa0705860:CDS | 45.0% |
| GTCGTGTATGTAGCTTTCTC+CGG | + | chr4_4:78678791-78678810 | Msa0705860:CDS | 45.0% | |
| CTTTCCAACGTTCTCCAACT+CGG | - | chr4_4:78678845-78678864 | None:intergenic | 45.0% | |
| ! | TGGAGAACGTTGGAAAGCAT+CGG | + | chr4_4:78678848-78678867 | Msa0705860:CDS | 45.0% |
| !! | CGTGCTACTTTGGTACTTAG+TGG | + | chr4_4:78679901-78679920 | Msa0705860:intron | 45.0% |
| TTTGGTACTTAGTGGCCGTT+TGG | + | chr4_4:78679909-78679928 | Msa0705860:intron | 45.0% | |
| AATGGATCATGGAGGAGATG+GGG | - | chr4_4:78680736-78680755 | None:intergenic | 45.0% | |
| GAATGGATCATGGAGGAGAT+GGG | - | chr4_4:78680737-78680756 | None:intergenic | 45.0% | |
| TGAAAGGGAATGGATCATGG+AGG | - | chr4_4:78680744-78680763 | None:intergenic | 45.0% | |
| GTAGAGATTGTCCATTGGTG+AGG | + | chr4_4:78681063-78681082 | Msa0705860:intron | 45.0% | |
| GGTACAATAGAATCCCCATC+TGG | + | chr4_4:78681432-78681451 | Msa0705860:intron | 45.0% | |
| AACTTAAGGTGGTCCAGATG+GGG | - | chr4_4:78681448-78681467 | None:intergenic | 45.0% | |
| TGGAGTTTGCCGACATTTAG+AGG | - | chr4_4:78681495-78681514 | None:intergenic | 45.0% | |
| ! | TCCACTCCCATCTTTGTTTG+TGG | - | chr4_4:78682257-78682276 | None:intergenic | 45.0% |
| !! | AGTCAACTAGTGCTGGTCAA+TGG | - | chr4_4:78682352-78682371 | None:intergenic | 45.0% |
| GTCATTGAGTGCGTGTGAAA+GGG | + | chr4_4:78682385-78682404 | Msa0705860:intron | 45.0% | |
| AAATCCCTATCAGGTCAGGT+GGG | - | chr4_4:78682437-78682456 | None:intergenic | 45.0% | |
| GCTGGTGTGAACATTGAACA+AGG | - | chr4_4:78682612-78682631 | None:intergenic | 45.0% | |
| TGTTCAATGTTCACACCAGC+TGG | + | chr4_4:78682612-78682631 | Msa0705860:intron | 45.0% | |
| CCAACTTTGTCTTAACCAGC+TGG | - | chr4_4:78682630-78682649 | None:intergenic | 45.0% | |
| CCAGCTGGTTAAGACAAAGT+TGG | + | chr4_4:78682627-78682646 | Msa0705860:intron | 45.0% | |
| AGGTTGTTGAAGCGGTAAAG+GGG | - | chr4_4:78682865-78682884 | None:intergenic | 45.0% | |
| GGGAGAAAAGGTTGTTGAAG+CGG | - | chr4_4:78682873-78682892 | None:intergenic | 45.0% | |
| AAAGCCAAACACCCTTTGTG+AGG | - | chr4_4:78682930-78682949 | None:intergenic | 45.0% | |
| !! | CACAAAGGGTGTTTGGCTTT+AGG | + | chr4_4:78682930-78682949 | Msa0705860:intron | 45.0% |
| ACCACTAGGTTGTAACAACG+AGG | + | chr4_4:78683379-78683398 | Msa0705860:intron | 45.0% | |
| TCCTCGTTGTTACAACCTAG+TGG | - | chr4_4:78683383-78683402 | None:intergenic | 45.0% | |
| CTATAGCTCCTCCAATGGAA+TGG | - | chr4_4:78683630-78683649 | None:intergenic | 45.0% | |
| AGATGCTATAGCTCCTCCAA+TGG | - | chr4_4:78683635-78683654 | None:intergenic | 45.0% | |
| TAGCATCTCTCTGCACTCTT+TGG | + | chr4_4:78683647-78683666 | Msa0705860:CDS | 45.0% | |
| GCTGCAAGCTTTCCATATTC+TGG | - | chr4_4:78683913-78683932 | None:intergenic | 45.0% | |
| CTAACTCAAGCTATGAGGCA+GGG | + | chr4_4:78684247-78684266 | Msa0705860:CDS | 45.0% | |
| !!! | AGGTTTGCAGCTTTTAGAGC+TGG | - | chr4_4:78684862-78684881 | None:intergenic | 45.0% |
| ! | CCTTGGCTAAGGATAATGGT+AGG | - | chr4_4:78684882-78684901 | None:intergenic | 45.0% |
| CCTACCATTATCCTTAGCCA+AGG | + | chr4_4:78684879-78684898 | Msa0705860:CDS | 45.0% | |
| ! | GAAAGGTACAACCTTGGCTA+AGG | - | chr4_4:78684893-78684912 | None:intergenic | 45.0% |
| AGGATCTGCCAAAGTACACA+TGG | + | chr4_4:78684993-78685012 | Msa0705860:CDS | 45.0% | |
| GCTCTTTGGTCAAAGTCATG+TGG | - | chr4_4:78685093-78685112 | None:intergenic | 45.0% | |
| GGGCTAAAGTTGAAGAAGCA+AGG | + | chr4_4:78685340-78685359 | Msa0705860:CDS | 45.0% | |
| !! | GAAGCAAGGGATTGGTTGAA+TGG | + | chr4_4:78685354-78685373 | Msa0705860:CDS | 45.0% |
| !! | GGAGGTGTCTATTGATGTTC+TGG | + | chr4_4:78685470-78685489 | Msa0705860:CDS | 45.0% |
| ! | TTCGAGTTACAGTACATGGG+TGG | + | chr4_4:78685500-78685519 | Msa0705860:CDS | 45.0% |
| CAGAGGTTTCCTCAACAGTT+TGG | + | chr4_4:78685561-78685580 | Msa0705860:CDS | 45.0% | |
| AGGAATCGTCCAAACTGTTG+AGG | - | chr4_4:78685573-78685592 | None:intergenic | 45.0% | |
| CAGTTTGGACGATTCCTTGA+CGG | + | chr4_4:78685576-78685595 | Msa0705860:CDS | 45.0% | |
| AGTTTGGACGATTCCTTGAC+GGG | + | chr4_4:78685577-78685596 | Msa0705860:CDS | 45.0% | |
| CTTAAGGCCTTAACACACAG+AGG | - | chr4_4:78685743-78685762 | None:intergenic | 45.0% | |
| CTCTGTGTGTTAAGGCCTTA+AGG | + | chr4_4:78685741-78685760 | Msa0705860:three_prime_UTR | 45.0% | |
| !!! | TTTTTTCATTTTATATTATT+TGG | + | chr4_4:78679000-78679019 | Msa0705860:intron | 5.0% |
| !!! | ATGTTTTTTTTTTTTTTTTA+AGG | + | chr4_4:78680464-78680483 | Msa0705860:intron | 5.0% |
| !! | GTTATTAATAATAATATTAT+AGG | - | chr4_4:78683526-78683545 | None:intergenic | 5.0% |
| GTTTGAGAGCAGTGAGATGC+TGG | + | chr4_4:78678658-78678677 | Msa0705860:CDS | 50.0% | |
| GATTTCTACGCCACTGTTGC+CGG | + | chr4_4:78678691-78678710 | Msa0705860:CDS | 50.0% | |
| CACAAAACTGCGGAGGTTGA+CGG | - | chr4_4:78678753-78678772 | None:intergenic | 50.0% | |
| CATGCTCCACCACAAAACTG+CGG | - | chr4_4:78678763-78678782 | None:intergenic | 50.0% | |
| AGCTTTCTCCGGCGTTCAAA+TGG | + | chr4_4:78678802-78678821 | Msa0705860:CDS | 50.0% | |
| !! | AGAACGTTGGAAAGCATCGG+TGG | + | chr4_4:78678851-78678870 | Msa0705860:CDS | 50.0% |
| ! | GTTTTCGACGCGTCGGAATA+AGG | + | chr4_4:78678883-78678902 | Msa0705860:CDS | 50.0% |
| GAATAAGGAAGAGGAGGAGC+CGG | + | chr4_4:78678898-78678917 | Msa0705860:CDS | 50.0% | |
| GGAATCGGAGAGTTGAACTC+TGG | + | chr4_4:78679708-78679727 | Msa0705860:intron | 50.0% | |
| AGACGGCGATGTTGTTAGTG+AGG | + | chr4_4:78679878-78679897 | Msa0705860:intron | 50.0% | |
| !! | GTTAGTGAGGCGTGCTACTT+TGG | + | chr4_4:78679891-78679910 | Msa0705860:intron | 50.0% |
| GGAATGGATCATGGAGGAGA+TGG | - | chr4_4:78680738-78680757 | None:intergenic | 50.0% | |
| CGGTGAAAGGGAATGGATCA+TGG | - | chr4_4:78680747-78680766 | None:intergenic | 50.0% | |
| AGTGTGACGGTGAAAGGGAA+TGG | - | chr4_4:78680754-78680773 | None:intergenic | 50.0% | |
| GTGTGAGTGTGACGGTGAAA+GGG | - | chr4_4:78680759-78680778 | None:intergenic | 50.0% | |
| AGTGTGAGTGTGACGGTGAA+AGG | - | chr4_4:78680760-78680779 | None:intergenic | 50.0% | |
| CCATCAATACGACCCTGATC+CGG | + | chr4_4:78681126-78681145 | Msa0705860:intron | 50.0% | |
| ATGCCGTTGGGCACATTGAA+AGG | + | chr4_4:78682117-78682136 | Msa0705860:intron | 50.0% | |
| TGCCGTTGGGCACATTGAAA+GGG | + | chr4_4:78682118-78682137 | Msa0705860:intron | 50.0% | |
| GACCCTTTCAATGTGCCCAA+CGG | - | chr4_4:78682123-78682142 | None:intergenic | 50.0% | |
| GCCACAAACAAAGATGGGAG+TGG | + | chr4_4:78682253-78682272 | Msa0705860:intron | 50.0% | |
| TGACCAGCACTAGTTGACTG+AGG | + | chr4_4:78682353-78682372 | Msa0705860:intron | 50.0% | |
| GACCAGCACTAGTTGACTGA+GGG | + | chr4_4:78682354-78682373 | Msa0705860:intron | 50.0% | |
| ACCAGCACTAGTTGACTGAG+GGG | + | chr4_4:78682355-78682374 | Msa0705860:intron | 50.0% | |
| CGTCATTGAGTGCGTGTGAA+AGG | + | chr4_4:78682384-78682403 | Msa0705860:intron | 50.0% | |
| TTTGTCCCACCTGACCTGAT+AGG | + | chr4_4:78682429-78682448 | Msa0705860:intron | 50.0% | |
| TTGTCCCACCTGACCTGATA+GGG | + | chr4_4:78682430-78682449 | Msa0705860:intron | 50.0% | |
| CAAATCCCTATCAGGTCAGG+TGG | - | chr4_4:78682438-78682457 | None:intergenic | 50.0% | |
| GGTTGTTGAAGCGGTAAAGG+GGG | - | chr4_4:78682864-78682883 | None:intergenic | 50.0% | |
| GTCATCACGGTCAAACCACT+AGG | + | chr4_4:78683365-78683384 | Msa0705860:intron | 50.0% | |
| GTGATCACTGGCCATTCCAT+TGG | + | chr4_4:78683616-78683635 | Msa0705860:CDS | 50.0% | |
| ATCACTGGCCATTCCATTGG+AGG | + | chr4_4:78683619-78683638 | Msa0705860:CDS | 50.0% | |
| !! | AGAAGCGCCAAAACTGAAGC+AGG | - | chr4_4:78683879-78683898 | None:intergenic | 50.0% |
| CCTGCCTCATAGCTTGAGTT+AGG | - | chr4_4:78684249-78684268 | None:intergenic | 50.0% | |
| CCTAACTCAAGCTATGAGGC+AGG | + | chr4_4:78684246-78684265 | Msa0705860:CDS | 50.0% | |
| CTATGAGGCAGGGCTTGAAT+TGG | + | chr4_4:78684257-78684276 | Msa0705860:CDS | 50.0% | |
| GTATCGCTGCAGATTCCTGT+TGG | - | chr4_4:78684795-78684814 | None:intergenic | 50.0% | |
| !! | GGCTCTGAAAGGTACAACCT+TGG | - | chr4_4:78684899-78684918 | None:intergenic | 50.0% |
| TTGTGAAGCGCAGACCCATT+TGG | - | chr4_4:78685115-78685134 | None:intergenic | 50.0% | |
| TAGGACATGGTAGAGCGAGA+AGG | + | chr4_4:78685214-78685233 | Msa0705860:CDS | 50.0% | |
| GTTTGGACGATTCCTTGACG+GGG | + | chr4_4:78685578-78685597 | Msa0705860:CDS | 50.0% | |
| AAGGAACAACTTCCCCGTCA+AGG | - | chr4_4:78685593-78685612 | None:intergenic | 50.0% | |
| CTGCACATCCTCCATGACTC+CGG | - | chr4_4:78678713-78678732 | None:intergenic | 55.0% | |
| GTCATGGAGGATGTGCAGCA+AGG | + | chr4_4:78678715-78678734 | Msa0705860:CDS | 55.0% | |
| ! | CGTCAACCTCCGCAGTTTTG+TGG | + | chr4_4:78678751-78678770 | Msa0705860:CDS | 55.0% |
| !! | CAACCTCCGCAGTTTTGTGG+TGG | + | chr4_4:78678754-78678773 | Msa0705860:CDS | 55.0% |
| TTCTCCGGCGTTCAAATGGC+CGG | + | chr4_4:78678806-78678825 | Msa0705860:CDS | 55.0% | |
| ! | GGATCCGAGTTGGAGAACGT+TGG | + | chr4_4:78678838-78678857 | Msa0705860:CDS | 55.0% |
| TTCCGACGCGTCGAAAACAG+CGG | - | chr4_4:78678881-78678900 | None:intergenic | 55.0% | |
| GACGCGTCGGAATAAGGAAG+AGG | + | chr4_4:78678889-78678908 | Msa0705860:CDS | 55.0% | |
| GCGTCGGAATAAGGAAGAGG+AGG | + | chr4_4:78678892-78678911 | Msa0705860:CDS | 55.0% | |
| ATCCCGGAGTGAACCTTCAC+CGG | - | chr4_4:78678920-78678939 | None:intergenic | 55.0% | |
| CCGGATCAGGGTCGTATTGA+TGG | - | chr4_4:78681129-78681148 | None:intergenic | 55.0% | |
| !! | CGCAGACCCATTTGGCTCTT+TGG | - | chr4_4:78685107-78685126 | None:intergenic | 55.0% |
| CTCCATGACTCCGGCAACAG+TGG | - | chr4_4:78678704-78678723 | None:intergenic | 60.0% | |
| CACTGTTGCCGGAGTCATGG+AGG | + | chr4_4:78678702-78678721 | Msa0705860:CDS | 60.0% | |
| GCTCCACCACAAAACTGCGG+AGG | - | chr4_4:78678760-78678779 | None:intergenic | 60.0% | |
| !! | TGCCGCTGTTTTCGACGCGT+CGG | + | chr4_4:78678876-78678895 | Msa0705860:CDS | 60.0% |
| GAGCCGGTGAAGGTTCACTC+CGG | + | chr4_4:78678914-78678933 | Msa0705860:CDS | 60.0% | |
| AGCCGGTGAAGGTTCACTCC+GGG | + | chr4_4:78678915-78678934 | Msa0705860:CDS | 60.0% | |
| GCCCCTCAGTCAACTAGTGC+TGG | - | chr4_4:78682359-78682378 | None:intergenic | 60.0% | |
| CGCCACTGTTGCCGGAGTCA+TGG | + | chr4_4:78678699-78678718 | Msa0705860:CDS | 65.0% | |
| GAGGTTGACGGCTGAGGCGT+TGG | - | chr4_4:78678741-78678760 | None:intergenic | 65.0% | |
| ACTGCGGAGGTTGACGGCTG+AGG | - | chr4_4:78678747-78678766 | None:intergenic | 65.0% | |
| TCCGGCGTTCAAATGGCCGG+CGG | + | chr4_4:78678809-78678828 | Msa0705860:CDS | 65.0% | |
| TCAAATGGCCGGCGGGGGAT+CGG | + | chr4_4:78678817-78678836 | Msa0705860:CDS | 65.0% | |
| GGAAGAGGAGGAGCCGGTGA+AGG | + | chr4_4:78678904-78678923 | Msa0705860:CDS | 65.0% | |
| CCCGCCGGCCATTTGAACGC+CGG | - | chr4_4:78678813-78678832 | None:intergenic | 70.0% | |
| CCGGCGTTCAAATGGCCGGC+GGG | + | chr4_4:78678810-78678829 | Msa0705860:CDS | 70.0% | |
| CGGCGTTCAAATGGCCGGCG+GGG | + | chr4_4:78678811-78678830 | Msa0705860:CDS | 70.0% | |
| GGCGTTCAAATGGCCGGCGG+GGG | + | chr4_4:78678812-78678831 | Msa0705860:CDS | 70.0% | |
| ACTCGGATCCGATCCCCCGC+CGG | - | chr4_4:78678828-78678847 | None:intergenic | 70.0% | |
| GCGGGGGATCGGATCCGAGT+TGG | + | chr4_4:78678828-78678847 | Msa0705860:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 78678362 | 78685803 | 78678362 | ID=Msa0705860;Name=Msa0705860 |
| chr4_4 | mRNA | 78678362 | 78685803 | 78678362 | ID=Msa0705860-mRNA-1;Parent=Msa0705860;Name=Msa0705860-mRNA-1;_AED=0.03;_eAED=0.03;_QI=94|1|1|1|1|1|4|189|631 |
| chr4_4 | exon | 78678362 | 78678478 | 78678362 | ID=Msa0705860-mRNA-1:exon:25099;Parent=Msa0705860-mRNA-1 |
| chr4_4 | exon | 78678658 | 78678982 | 78678658 | ID=Msa0705860-mRNA-1:exon:25100;Parent=Msa0705860-mRNA-1 |
| chr4_4 | exon | 78683577 | 78684308 | 78683577 | ID=Msa0705860-mRNA-1:exon:25101;Parent=Msa0705860-mRNA-1 |
| chr4_4 | exon | 78684799 | 78685803 | 78684799 | ID=Msa0705860-mRNA-1:exon:25102;Parent=Msa0705860-mRNA-1 |
| chr4_4 | five_prime_UTR | 78678362 | 78678455 | 78678362 | ID=Msa0705860-mRNA-1:five_prime_utr;Parent=Msa0705860-mRNA-1 |
| chr4_4 | CDS | 78678456 | 78678478 | 78678456 | ID=Msa0705860-mRNA-1:cds;Parent=Msa0705860-mRNA-1 |
| chr4_4 | CDS | 78678658 | 78678982 | 78678658 | ID=Msa0705860-mRNA-1:cds;Parent=Msa0705860-mRNA-1 |
| chr4_4 | CDS | 78683577 | 78684308 | 78683577 | ID=Msa0705860-mRNA-1:cds;Parent=Msa0705860-mRNA-1 |
| chr4_4 | CDS | 78684799 | 78685614 | 78684799 | ID=Msa0705860-mRNA-1:cds;Parent=Msa0705860-mRNA-1 |
| chr4_4 | three_prime_UTR | 78685615 | 78685803 | 78685615 | ID=Msa0705860-mRNA-1:three_prime_utr;Parent=Msa0705860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
