AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1130390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1130390 MtrunA17_Chr7g0275581 93.593 718 17 1 1 689 1 718 0.0 1384
Msa1130390 MtrunA17_Chr8g0347121 62.219 757 189 8 1 689 1 728 0.0 915
Msa1130390 MtrunA17_Chr3g0126541 63.636 715 220 8 7 689 7 713 0.0 911
Msa1130390 MtrunA17_Chr1g0158861 62.204 717 221 9 7 685 8 712 0.0 875
Msa1130390 MtrunA17_Chr4g0073941 51.412 708 289 11 16 686 38 727 0.0 694
Msa1130390 MtrunA17_Chr4g0001481 51.298 655 269 9 74 686 92 738 0.0 658
Msa1130390 MtrunA17_Chr2g0305771 49.640 695 278 11 54 687 4 687 0.0 655
Msa1130390 MtrunA17_Chr2g0326871 50.935 642 263 10 83 687 77 703 0.0 637
Msa1130390 MtrunA17_Chr3g0139071 49.472 663 270 10 80 687 70 722 0.0 636
Msa1130390 MtrunA17_Chr7g0228181 48.018 681 296 10 52 685 9 678 0.0 631
Msa1130390 MtrunA17_Chr4g0028861 53.054 573 220 9 80 615 121 681 0.0 611
Msa1130390 MtrunA17_Chr1g0181121 46.647 671 299 11 60 684 21 678 0.0 604
Msa1130390 MtrunA17_Chr3g0125651 47.964 663 276 11 82 685 35 687 0.0 603
Msa1130390 MtrunA17_Chr6g0481021 37.241 580 305 11 83 615 123 690 7.64e-113 355
Msa1130390 MtrunA17_Chr6g0480671 35.959 584 312 10 82 619 192 759 1.53e-106 341
Msa1130390 MtrunA17_Chr6g0480851 35.726 585 310 13 83 619 184 750 1.46e-105 338
Msa1130390 MtrunA17_Chr8g0360821 33.276 577 321 10 84 611 63 624 5.13e-105 334
Msa1130390 MtrunA17_Chr6g0480781 33.627 568 324 13 83 608 169 725 7.78e-101 326
Msa1130390 MtrunA17_Chr7g0218341 34.423 581 314 13 82 611 108 672 3.56e-97 315
Msa1130390 MtrunA17_Chr2g0318561 36.054 441 251 7 188 611 21 447 1.84e-89 288
Msa1130390 MtrunA17_Chr6g0480741 32.162 569 330 10 82 608 114 668 2.32e-89 293
Msa1130390 MtrunA17_Chr6g0480681 30.744 605 329 13 83 616 115 700 1.96e-83 279
Msa1130390 MtrunA17_Chr5g0395421 37.954 303 166 6 302 592 63 355 4.59e-51 182
Msa1130390 MtrunA17_Chr6g0480771 35.714 252 140 6 374 613 12 253 1.70e-38 144
Msa1130390 MtrunA17_Chr2g0326861 37.561 205 85 5 158 326 14 211 1.52e-33 128
Msa1130390 MtrunA17_Chr6g0480841 38.889 198 102 4 428 613 2 192 5.09e-33 126
Msa1130390 MtrunA17_Chr5g0395411 33.495 206 91 4 83 258 172 361 1.36e-32 129
Msa1130390 MtrunA17_Chr2g0326851 47.692 130 62 3 557 685 7 131 9.08e-27 105
Msa1130390 MtrunA17_Chr6g0480751 31.319 182 104 3 23 199 49 214 1.19e-20 91.7
Msa1130390 MtrunA17_Chr6g0480791 35.593 118 75 1 83 199 172 289 1.36e-20 92.8
Msa1130390 MtrunA17_Chr2g0277651 22.011 527 324 16 78 586 60 517 9.47e-18 87.8
Msa1130390 MtrunA17_Chr4g0063141 21.245 466 280 14 83 531 46 441 3.08e-17 86.3
Msa1130390 MtrunA17_Chr3g0138671 26.471 204 145 3 329 531 243 442 7.13e-16 81.6
Msa1130390 MtrunA17_Chr2g0318551 31.250 128 76 4 78 201 58 177 3.87e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1130390 AT5G53130.1 62.517 723 225 11 1 686 1 714 0.0 880
Msa1130390 AT4G01010.1 58.873 710 233 8 9 685 9 692 0.0 847
Msa1130390 AT4G01010.2 58.873 710 233 8 9 685 9 692 0.0 847
Msa1130390 AT1G01340.2 58.357 694 239 6 31 687 26 706 0.0 822
Msa1130390 AT1G01340.1 58.357 694 239 6 31 687 21 701 0.0 821
Msa1130390 AT2G46430.1 56.625 717 261 11 1 684 2 701 0.0 796
Msa1130390 AT2G46430.2 56.625 717 261 11 1 684 2 701 0.0 796
Msa1130390 AT4G30560.1 51.240 726 292 13 7 686 20 729 0.0 714
Msa1130390 AT4G30560.4 51.240 726 292 13 7 686 20 729 0.0 714
Msa1130390 AT4G30560.5 52.993 685 267 10 45 686 31 703 0.0 712
Msa1130390 AT4G30560.2 52.993 685 267 10 45 686 31 703 0.0 712
Msa1130390 AT4G30560.3 52.993 685 267 10 45 686 31 703 0.0 712
Msa1130390 AT5G57940.1 51.236 728 301 11 1 686 1 716 0.0 712
Msa1130390 AT5G57940.2 51.236 728 301 11 1 686 1 716 0.0 712
Msa1130390 AT5G57940.3 50.897 725 301 11 1 686 1 709 0.0 706
Msa1130390 AT2G23980.9 50.134 744 291 14 8 689 22 747 0.0 704
Msa1130390 AT2G23980.10 50.134 744 291 14 8 689 22 747 0.0 704
Msa1130390 AT2G23980.1 50.134 744 291 14 8 689 22 747 0.0 704
Msa1130390 AT2G23980.4 50.134 744 291 14 8 689 22 747 0.0 704
Msa1130390 AT2G23980.5 50.134 744 291 14 8 689 22 747 0.0 704
Msa1130390 AT2G23980.6 50.204 735 288 13 17 689 2 720 0.0 702
Msa1130390 AT2G23980.3 48.761 767 290 15 8 689 22 770 0.0 692
Msa1130390 AT2G23980.2 48.761 767 290 15 8 689 22 770 0.0 692
Msa1130390 AT2G23980.8 48.761 767 290 15 8 689 22 770 0.0 692
Msa1130390 AT2G23980.7 48.761 767 290 15 8 689 22 770 0.0 692
Msa1130390 AT1G19780.1 48.226 761 286 15 7 686 13 746 0.0 677
Msa1130390 AT1G15990.1 48.800 750 291 17 7 687 13 738 0.0 668
Msa1130390 AT2G24610.1 50.299 668 257 12 80 685 69 723 0.0 648
Msa1130390 AT2G24610.2 50.224 669 258 12 80 686 84 739 0.0 646
Msa1130390 AT2G28260.1 50.230 651 258 11 73 687 58 678 0.0 625
Msa1130390 AT2G28260.2 50.384 651 257 11 73 687 18 638 0.0 624
Msa1130390 AT4G30360.1 49.017 661 271 12 81 687 69 717 0.0 622
Msa1130390 AT5G14870.1 47.710 677 276 12 80 688 37 703 0.0 620
Msa1130390 AT3G48010.1 44.950 703 310 13 52 684 9 704 0.0 600
Msa1130390 AT2G46440.1 49.346 612 274 8 69 647 13 621 0.0 576
Msa1130390 AT2G46450.4 43.994 666 317 12 52 684 2 644 0.0 546
Msa1130390 AT2G46450.1 43.994 666 317 12 52 684 2 644 0.0 546
Msa1130390 AT1G19780.2 53.935 521 199 10 195 686 27 535 0.0 538
Msa1130390 AT2G46450.2 42.429 667 305 13 52 685 2 622 4.87e-174 511
Msa1130390 AT2G46450.3 42.901 648 297 12 71 685 2 609 1.77e-173 509
Msa1130390 AT2G46440.2 55.180 444 191 6 209 647 3 443 4.10e-162 474
Msa1130390 AT3G17690.1 33.559 590 338 10 71 618 142 719 2.52e-112 355
Msa1130390 AT5G15410.1 34.110 601 334 12 62 608 85 677 3.00e-104 334
Msa1130390 AT5G15410.2 34.110 601 334 12 62 608 84 676 3.57e-104 334
Msa1130390 AT5G54250.2 33.675 585 316 12 82 611 78 645 1.90e-102 328
Msa1130390 AT5G54250.1 33.675 585 316 12 82 611 78 645 1.90e-102 328
Msa1130390 AT5G54250.4 33.675 585 316 12 82 611 78 645 1.90e-102 328
Msa1130390 AT3G17700.1 33.904 584 328 10 70 608 175 745 1.37e-101 328
Msa1130390 AT5G54250.3 33.162 585 314 13 82 611 78 640 6.21e-97 313
Msa1130390 AT3G17690.2 33.267 502 290 6 71 538 142 632 1.71e-96 311
Msa1130390 AT3G17700.2 33.658 514 281 8 70 542 175 669 6.33e-89 292
Msa1130390 AT3G17690.3 29.815 379 228 4 71 415 142 516 1.03e-59 209
Msa1130390 AT4G22200.2 21.675 406 275 10 127 531 100 463 6.51e-16 82.0
Msa1130390 AT4G22200.1 21.675 406 275 10 127 531 100 463 1.02e-15 81.6
Msa1130390 AT4G32650.3 23.153 203 153 2 329 531 276 475 2.14e-12 70.9
Msa1130390 AT4G32650.1 23.153 203 153 2 329 531 276 475 2.30e-12 70.9
Msa1130390 AT4G32650.2 23.153 203 153 2 329 531 276 475 2.81e-12 70.5

Find 126 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAAACTACTGCATGTTTA+AGG 0.112494 7_3:+82548703 Msa1130390:five_prime_UTR
TTTGTCTGTCCTTCATTTAC+AGG 0.139208 7_3:-82549563 None:intergenic
GACACAAAGACCTTCAATTT+TGG 0.153222 7_3:+82550732 Msa1130390:CDS
ATGTCTCTTCTGAGATCTTT+AGG 0.165544 7_3:-82551604 None:intergenic
TGTTGATAAGACGTCTAAAT+TGG 0.175315 7_3:-82552121 None:intergenic
AACATTGTCACAGAAATATT+TGG 0.196110 7_3:+82551411 Msa1130390:intron
AACAACTCCAACACACTTTC+AGG 0.217196 7_3:+82552147 Msa1130390:CDS
GGTGGGGTTTGCGAAATTTA+AGG 0.232956 7_3:+82550832 Msa1130390:CDS
AGAAGTTCTTCTACTGCTTT+TGG 0.250588 7_3:+82550811 Msa1130390:CDS
GATCTTTCATGATTCATTCT+TGG 0.252507 7_3:+82550632 Msa1130390:CDS
GGTGCCAATGTTTGAGAAAA+TGG 0.252844 7_3:+82551770 Msa1130390:intron
ATTCTTTGCTTCAAGTTATC+AGG 0.254362 7_3:-82551511 None:intergenic
GCTTTATTCTACATGCAAAA+TGG 0.276870 7_3:-82552666 None:intergenic
TGTCTCTTCTGAGATCTTTA+GGG 0.282650 7_3:-82551603 None:intergenic
ATCTTTCATGATTCATTCTT+GGG 0.294155 7_3:+82550633 Msa1130390:CDS
TTTGTGTCCTTGATTTCATC+AGG 0.318413 7_3:-82550717 None:intergenic
ATTTGGAATCTACAACTGTT+AGG 0.325785 7_3:+82551428 Msa1130390:CDS
GGTAGATTCGAGGAGGAGTT+TGG 0.326898 7_3:-82552017 None:intergenic
TTGTTAAAATTTGCAGCATT+AGG 0.339108 7_3:-82548636 None:intergenic
CATGATTCATTCTTGGGTTG+TGG 0.339182 7_3:+82550639 Msa1130390:CDS
AAATCAGGCTCAGCTGGCTT+TGG 0.369096 7_3:-82552502 None:intergenic
AGCTAACTGGTATCTGCTTT+CGG 0.371915 7_3:+82550563 Msa1130390:CDS
GTCATTCCAGGTTTGATGAT+TGG 0.372248 7_3:+82549384 Msa1130390:intron
GTGCTCCGTTATTAATTTGT+AGG 0.372691 7_3:+82548371 Msa1130390:five_prime_UTR
ATGAAAAGCATCTCATCAAC+TGG 0.403707 7_3:-82551876 None:intergenic
ACAACAAATGGTGGAAGAAC+TGG 0.406941 7_3:+82551924 Msa1130390:CDS
AACTCATTATTTCTAATGCC+TGG 0.409859 7_3:+82551954 Msa1130390:CDS
ATCATCTTTCAGTTCAGAAC+CGG 0.410694 7_3:+82549812 Msa1130390:CDS
TGTAGAATAAAGCACTTTGT+TGG 0.410781 7_3:+82552676 Msa1130390:three_prime_UTR
TCAGGCTCAGCTGGCTTTGG+AGG 0.411708 7_3:-82552499 None:intergenic
ATAAAGAGAGATATGATTGA+TGG 0.412373 7_3:-82548608 None:intergenic
GGACGAATTCGCAGTAGTCT+TGG 0.426942 7_3:-82550333 None:intergenic
CTCTTCTCTGTATACAGAAC+TGG 0.432902 7_3:-82551831 None:intergenic
ATCAGGTGGTTGGAGCTAAC+TGG 0.435899 7_3:+82550550 Msa1130390:intron
AGAAGAAGGCGCAATAAATC+CGG 0.441145 7_3:-82549831 None:intergenic
ATCAATTATTCCACTTCCAC+AGG 0.444563 7_3:+82549940 Msa1130390:CDS
TTCTCCCTACAAATTAATAA+CGG 0.444916 7_3:-82548376 None:intergenic
AAAACTTAAAATTCTTAGCT+AGG 0.446530 7_3:-82552545 None:intergenic
TCTCAACAATACTTGTAGTT+CGG 0.447827 7_3:+82550689 Msa1130390:CDS
GTAGAAATAGAAATAGAAAG+TGG 0.450710 7_3:-82548564 None:intergenic
GTTGATAAGACGTCTAAATT+GGG 0.453470 7_3:-82552120 None:intergenic
AGACAAGCTACAAGATGCTT+TGG 0.455256 7_3:+82552345 Msa1130390:CDS
TAGAAAGTGGAAGGAAATTG+AGG 0.456437 7_3:-82548551 None:intergenic
TCTTCCACCATTTGTTGTCA+TGG 0.459499 7_3:-82551919 None:intergenic
GAAAATGGATGCGCAATTGT+TGG 0.462399 7_3:+82551785 Msa1130390:CDS
AGGGGCCTATGCTTCAGAAA+TGG 0.463837 7_3:+82549624 Msa1130390:CDS
ATTCAGAAGACCCTCTTCAA+TGG 0.464748 7_3:+82549535 Msa1130390:CDS
AAAGAAGTAACTAGAACTTC+AGG 0.467604 7_3:+82550363 Msa1130390:CDS
GCAGTGAAATCAGGCTCAGC+TGG 0.470966 7_3:-82552508 None:intergenic
TTTGGAATCTACAACTGTTA+GGG 0.471097 7_3:+82551429 Msa1130390:CDS
TGCTCCGTTATTAATTTGTA+GGG 0.473396 7_3:+82548372 Msa1130390:five_prime_UTR
TTCATAATTAAAACTACTTG+TGG 0.474112 7_3:-82549228 None:intergenic
ATGTAAGATACCTGTGGAAG+TGG 0.474345 7_3:-82549950 None:intergenic
GTCGCTACCATGACAACAAA+TGG 0.479163 7_3:+82551912 Msa1130390:CDS
GCGCAAAATTCTTGATCCAC+AGG 0.484054 7_3:+82549604 Msa1130390:CDS
AACAAGAATAGCTACCTCCT+TGG 0.484697 7_3:+82548654 Msa1130390:five_prime_UTR
TGAAGGACAGACAAAGAAGT+TGG 0.488740 7_3:+82549571 Msa1130390:CDS
TCTACTGTTCTAGTTGAAGT+AGG 0.489534 7_3:-82552038 None:intergenic
TAGAATCACAGGTGCGGTGT+TGG 0.493114 7_3:+82550586 Msa1130390:CDS
TTGTTCCATTTCTGAAGCAT+AGG 0.493360 7_3:-82549629 None:intergenic
CGCAAAATTCTTGATCCACA+GGG 0.496850 7_3:+82549605 Msa1130390:CDS
GTAAAATATTCCAAAATTGA+AGG 0.500942 7_3:-82550742 None:intergenic
TTGTCTGTCCTTCATTTACA+GGG 0.501508 7_3:-82549562 None:intergenic
AAGAGATGAGAGTGAAGAGG+AGG 0.503300 7_3:+82551455 Msa1130390:CDS
AGAGATGAGAGTGAAGAGGA+GGG 0.512738 7_3:+82551456 Msa1130390:CDS
GTGCAACAATATATGCATCA+AGG 0.513200 7_3:+82552398 Msa1130390:CDS
GAAGGTATGAACAATACAAA+TGG 0.513283 7_3:+82551536 Msa1130390:CDS
ACAAGATGCTTTGGCAAATG+AGG 0.517602 7_3:+82552354 Msa1130390:CDS
GCTGGCTTTGGAGGCAAAAG+AGG 0.520461 7_3:-82552490 None:intergenic
TTGACAGAGACAGCATGGGC+TGG 0.520818 7_3:+82550390 Msa1130390:CDS
AGAAAGTGGAAGGAAATTGA+GGG 0.521052 7_3:-82548550 None:intergenic
AGTTGAAGCATTTGCACTCA+AGG 0.523020 7_3:+82552073 Msa1130390:CDS
TACAAATGGCAAGAAAATAG+AGG 0.529141 7_3:+82551550 Msa1130390:CDS
CGTGTTTCATACAAGCAGCT+TGG 0.529225 7_3:+82552275 Msa1130390:CDS
ATTACTTATTGGAAACATGC+AGG 0.534257 7_3:+82551082 Msa1130390:CDS
CTCTTCTGAGATCTTTAGGG+AGG 0.539483 7_3:-82551600 None:intergenic
ATGGTTCACCCTGTAAATGA+AGG 0.544076 7_3:+82549554 Msa1130390:CDS
TTGTTGTATAAGTATGCAGT+AGG 0.547340 7_3:+82552632 Msa1130390:three_prime_UTR
TCTGCTTTCGGTAGAATCAC+AGG 0.550889 7_3:+82550575 Msa1130390:CDS
TGACATAAGTAGTTGTCTTG+AGG 0.551121 7_3:-82551007 None:intergenic
AGTTGAAGTAGGTAGATTCG+AGG 0.551450 7_3:-82552027 None:intergenic
GAAGGATCAACTATAAGCCT+TGG 0.552180 7_3:+82552376 Msa1130390:CDS
AAATAGAAATAGAAAGTGGA+AGG 0.554942 7_3:-82548560 None:intergenic
AGGAAGAGATGAGAGTGAAG+AGG 0.555226 7_3:+82551452 Msa1130390:CDS
ATTCGCCGCAATGGAAGACA+TGG 0.558436 7_3:+82552248 Msa1130390:CDS
AGCAACAAACTTCAAGTCAT+CGG 0.560042 7_3:-82552096 None:intergenic
GGTTGACCCTGATGAAATCA+AGG 0.563314 7_3:+82550710 Msa1130390:CDS
TTGTGTCCTTGATTTCATCA+GGG 0.564618 7_3:-82550716 None:intergenic
TTCAAAACAGCACTTACACT+TGG 0.564904 7_3:-82549467 None:intergenic
CTTTGTAATCACATGTGTGC+TGG 0.566586 7_3:+82549655 Msa1130390:CDS
CTAGTTACTTCTTTGAATAG+CGG 0.567096 7_3:-82550354 None:intergenic
GCATATTGACAGAGACAGCA+TGG 0.567615 7_3:+82550385 Msa1130390:CDS
AAGTGGAAGGAAATTGAGGG+AGG 0.567987 7_3:-82548547 None:intergenic
CGATGCTCTACAATCACTTG+TGG 0.568191 7_3:+82550764 Msa1130390:CDS
GCTGTGGCATATCAGGTGGT+TGG 0.570471 7_3:+82550540 Msa1130390:intron
CATGACTTGCTAGCATGTAG+AGG 0.576581 7_3:-82550431 None:intergenic
AGCCATACCTGAAAGTGTGT+TGG 0.577823 7_3:-82552154 None:intergenic
TAGTATGACTTAGTAAGAGT+TGG 0.578658 7_3:-82548517 None:intergenic
AGTGGAAGGAAATTGAGGGA+GGG 0.582392 7_3:-82548546 None:intergenic
CAAAGGGACTTAAATTTGTG+AGG 0.583675 7_3:+82549253 Msa1130390:CDS
ATGTGTGCTGGCAATTTCTG+TGG 0.584670 7_3:+82549667 Msa1130390:CDS
TTCTGAAGCATAGGCCCCTG+TGG 0.593264 7_3:-82549620 None:intergenic
GATGCTTTGGCAAATGAGGA+AGG 0.599672 7_3:+82552358 Msa1130390:CDS
TGAAGTAGGTAGATTCGAGG+AGG 0.612728 7_3:-82552024 None:intergenic
GAAGGTCATATTCGCCGCAA+TGG 0.616822 7_3:+82552239 Msa1130390:intron
CAAGACAACTACTTATGTCA+CGG 0.621549 7_3:+82551010 Msa1130390:CDS
GGAATCTACAACTGTTAGGG+AGG 0.622363 7_3:+82551432 Msa1130390:CDS
TACAGGGTGAACCATTGAAG+AGG 0.623504 7_3:-82549546 None:intergenic
AAGCAGTAGAAGAACTTCTG+AGG 0.632929 7_3:-82550807 None:intergenic
ACAGGGTGAACCATTGAAGA+GGG 0.633047 7_3:-82549545 None:intergenic
TTGTGTTGTGTTGAGTACAG+TGG 0.634899 7_3:+82549203 Msa1130390:five_prime_UTR
ACTTGAAGCAAAGAATTCGA+AGG 0.635824 7_3:+82551518 Msa1130390:CDS
GTATATGCATATAAATACAA+TGG 0.644039 7_3:-82552592 None:intergenic
AGAGGAGGGATGCAGAACGA+TGG 0.648495 7_3:+82551470 Msa1130390:CDS
TTCGCCGCAATGGAAGACAT+GGG 0.649271 7_3:+82552249 Msa1130390:CDS
ATTGGAAGAAGATTTGTGAG+TGG 0.657972 7_3:+82549494 Msa1130390:CDS
CATATTGACAGAGACAGCAT+GGG 0.658548 7_3:+82550386 Msa1130390:CDS
ATGCATATATTGTTGCACCA+AGG 0.658649 7_3:-82552393 None:intergenic
GAACTTCTGAGGAAAATCTG+TGG 0.660686 7_3:-82550796 None:intergenic
AATGGCAATGAAAATCGCAA+AGG 0.663936 7_3:-82551039 None:intergenic
GCTACCATGACAACAAATGG+TGG 0.669524 7_3:+82551915 Msa1130390:CDS
TCGCCGCAATGGAAGACATG+GGG 0.689004 7_3:+82552250 Msa1130390:CDS
GCACCCCATGTCTTCCATTG+CGG 0.689623 7_3:-82552253 None:intergenic
TTTCGGTAGAATCACAGGTG+CGG 0.705875 7_3:+82550580 Msa1130390:CDS
AAAAGAGGTAGTAGTCTCTG+CGG 0.729813 7_3:-82552475 None:intergenic
GCAAAATTCTTGATCCACAG+GGG 0.734232 7_3:+82549606 Msa1130390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTCTCATATATTTTATA+GGG + chr7_3:82551147-82551166 Msa1130390:intron 10.0%
!! AAAATAATTAAGAGAAAATA+TGG - chr7_3:82552187-82552206 None:intergenic 10.0%
!!! AAATTTATACTATTTTTTGA+AGG + chr7_3:82552221-82552240 Msa1130390:intron 10.0%
!!! TTAAACAAATTAATTTGACT+TGG - chr7_3:82548874-82548893 None:intergenic 15.0%
!! TATATTATATTAGTATATGC+AGG - chr7_3:82549293-82549312 None:intergenic 15.0%
!! TTCAAATTAATAACAAGATT+TGG + chr7_3:82549346-82549365 Msa1130390:intron 15.0%
!!! TTTTTTTTTTTCAGTTAAGT+TGG + chr7_3:82550129-82550148 Msa1130390:intron 15.0%
!!! GTTTTTCTCATATATTTTAT+AGG + chr7_3:82551146-82551165 Msa1130390:intron 15.0%
!!! TAAGAATTTTAAGTTTTGAT+AGG + chr7_3:82552551-82552570 Msa1130390:three_prime_UTR 15.0%
!! GTACTATTACAAAAATCAAT+AGG - chr7_3:82548980-82548999 None:intergenic 20.0%
!! TTCATAATTAAAACTACTTG+TGG - chr7_3:82549231-82549250 None:intergenic 20.0%
!!! AGTTTTAATTATGAATGCAA+AGG + chr7_3:82549236-82549255 Msa1130390:exon 20.0%
!!! GTTTTAATTATGAATGCAAA+GGG + chr7_3:82549237-82549256 Msa1130390:exon 20.0%
!! TAAACAAAAATGTCTTGATT+TGG + chr7_3:82549724-82549743 Msa1130390:CDS 20.0%
!!! ACATAATTTTGTTGTTGTTT+TGG + chr7_3:82550209-82550228 Msa1130390:intron 20.0%
!! GTAAAATATTCCAAAATTGA+AGG - chr7_3:82550745-82550764 None:intergenic 20.0%
!!! AATTTTCCATTGAAAAAACT+GGG - chr7_3:82550928-82550947 None:intergenic 20.0%
!!! AAATTTTCCATTGAAAAAAC+TGG - chr7_3:82550929-82550948 None:intergenic 20.0%
!! TTTCATATCAATGATCTAAT+AGG - chr7_3:82551125-82551144 None:intergenic 20.0%
!! TATTAGATCATTGATATGAA+AGG + chr7_3:82551124-82551143 Msa1130390:intron 20.0%
!! TTATTTAAATCACTTGGATT+AGG - chr7_3:82551243-82551262 None:intergenic 20.0%
!! TTATGCTTATTTAAATCACT+TGG - chr7_3:82551249-82551268 None:intergenic 20.0%
!! AGCTCATTAATTAATAAAAG+AGG - chr7_3:82551377-82551396 None:intergenic 20.0%
!! ACGAAAAATGATTTAATTGT+GGG - chr7_3:82551685-82551704 None:intergenic 20.0%
!!! ATGTTCTTTAATTTTGCATT+AGG + chr7_3:82551749-82551768 Msa1130390:intron 20.0%
!! ATTGTAAAAAGAAAATTGAG+AGG + chr7_3:82552305-82552324 Msa1130390:CDS 20.0%
!! AAAACTTAAAATTCTTAGCT+AGG - chr7_3:82552548-82552567 None:intergenic 20.0%
!! GTATATGCATATAAATACAA+TGG - chr7_3:82552595-82552614 None:intergenic 20.0%
! TTCTCCCTACAAATTAATAA+CGG - chr7_3:82548379-82548398 None:intergenic 25.0%
! AAATAGAAATAGAAAGTGGA+AGG - chr7_3:82548563-82548582 None:intergenic 25.0%
! GTAGAAATAGAAATAGAAAG+TGG - chr7_3:82548567-82548586 None:intergenic 25.0%
! ATAAAGAGAGATATGATTGA+TGG - chr7_3:82548611-82548630 None:intergenic 25.0%
! TTGTTAAAATTTGCAGCATT+AGG - chr7_3:82548639-82548658 None:intergenic 25.0%
! AGAACATGAAAAAAGTAGAA+AGG - chr7_3:82548786-82548805 None:intergenic 25.0%
!!! TTAAATATCCAACTTGTTGA+TGG + chr7_3:82549075-82549094 Msa1130390:intron 25.0%
!!! ATTCACAATAGTTTGACTTT+TGG + chr7_3:82549133-82549152 Msa1130390:intron 25.0%
! ACAAGTTTCTAATTTGATGT+TGG + chr7_3:82549162-82549181 Msa1130390:intron 25.0%
!! AATTTGATGTTGGATTTTAC+AGG + chr7_3:82549172-82549191 Msa1130390:intron 25.0%
!!! TAATCTTAGTTTTCCTAAGT+TGG + chr7_3:82549311-82549330 Msa1130390:intron 25.0%
! AATTTCTAACTATCCAACTT+AGG - chr7_3:82549327-82549346 None:intergenic 25.0%
! CTGGAATGTAAAAGAAAAAA+GGG - chr7_3:82549694-82549713 None:intergenic 25.0%
! ACTGGAATGTAAAAGAAAAA+AGG - chr7_3:82549695-82549714 None:intergenic 25.0%
!! ACTCAAGTATCTTTTCATTA+TGG - chr7_3:82549897-82549916 None:intergenic 25.0%
! TATGACAAATGAGTTTACTT+TGG - chr7_3:82550090-82550109 None:intergenic 25.0%
!!! TTTTTTTCAGTTAAGTTGGA+AGG + chr7_3:82550133-82550152 Msa1130390:intron 25.0%
!!! TTTTTTCAGTTAAGTTGGAA+GGG + chr7_3:82550134-82550153 Msa1130390:intron 25.0%
!! GGTATTTCAGATTATTGTTT+TGG + chr7_3:82550230-82550249 Msa1130390:intron 25.0%
! AACAAATCCTTTGCTAAAAA+TGG - chr7_3:82550285-82550304 None:intergenic 25.0%
! ATCTTTCATGATTCATTCTT+GGG + chr7_3:82550633-82550652 Msa1130390:CDS 25.0%
! GAATAAAACCAATCCAAAAA+TGG - chr7_3:82551060-82551079 None:intergenic 25.0%
!!! GTTTTATTCGCATTACTTAT+TGG + chr7_3:82551071-82551090 Msa1130390:CDS 25.0%
!!! GTCCATTTTTGCTTAATTTT+CGG + chr7_3:82551323-82551342 Msa1130390:intron 25.0%
! AACATTGTCACAGAAATATT+TGG + chr7_3:82551411-82551430 Msa1130390:intron 25.0%
! AAAATGATTTAATTGTGGGA+TGG - chr7_3:82551681-82551700 None:intergenic 25.0%
! GACGAAAAATGATTTAATTG+TGG - chr7_3:82551686-82551705 None:intergenic 25.0%
! CAATATATTATGTAAACACG+TGG - chr7_3:82551708-82551727 None:intergenic 25.0%
!! TGCTCCGTTATTAATTTGTA+GGG + chr7_3:82548372-82548391 Msa1130390:five_prime_UTR 30.0%
TAGTATGACTTAGTAAGAGT+TGG - chr7_3:82548520-82548539 None:intergenic 30.0%
!!! TGATGTTTGTTTTGTTTCCA+AGG - chr7_3:82548674-82548693 None:intergenic 30.0%
AACAAACTACTGCATGTTTA+AGG + chr7_3:82548703-82548722 Msa1130390:five_prime_UTR 30.0%
ATGTTTGTTTCCTACATATG+TGG + chr7_3:82548944-82548963 Msa1130390:intron 30.0%
!!! TAGTACTTTTTCATCCATTG+TGG + chr7_3:82548994-82549013 Msa1130390:intron 30.0%
AAATATAGCCATCAACAAGT+TGG - chr7_3:82549086-82549105 None:intergenic 30.0%
! TTTTACATTCCAGTGATTGT+CGG + chr7_3:82549701-82549720 Msa1130390:CDS 30.0%
!! CAAAAATGTCTTGATTTGGA+TGG + chr7_3:82549728-82549747 Msa1130390:CDS 30.0%
GTTAAAATGTAAGATACCTG+TGG - chr7_3:82549959-82549978 None:intergenic 30.0%
AATTCCAAACTTGAAAAGCT+CGG + chr7_3:82550257-82550276 Msa1130390:intron 30.0%
CTAGTTACTTCTTTGAATAG+CGG - chr7_3:82550357-82550376 None:intergenic 30.0%
AAAGAAGTAACTAGAACTTC+AGG + chr7_3:82550363-82550382 Msa1130390:CDS 30.0%
! AACATTTTGTCATGGTAAGT+AGG - chr7_3:82550496-82550515 None:intergenic 30.0%
! GTGATCAAAACATTTTGTCA+TGG - chr7_3:82550504-82550523 None:intergenic 30.0%
GATCTTTCATGATTCATTCT+TGG + chr7_3:82550632-82550651 Msa1130390:CDS 30.0%
TCTCAACAATACTTGTAGTT+CGG + chr7_3:82550689-82550708 Msa1130390:CDS 30.0%
! GTCATATTTTACAGTTCTCT+TGG + chr7_3:82550978-82550997 Msa1130390:intron 30.0%
!!! TTTCATTGCCATTTTTGGAT+TGG + chr7_3:82551049-82551068 Msa1130390:CDS 30.0%
ATTACTTATTGGAAACATGC+AGG + chr7_3:82551082-82551101 Msa1130390:CDS 30.0%
! AACAGAAACGACATTTTCTA+TGG + chr7_3:82551192-82551211 Msa1130390:intron 30.0%
!!! ATCAGTGGTTTTGGATTTTT+GGG - chr7_3:82551282-82551301 None:intergenic 30.0%
!!! AATCAGTGGTTTTGGATTTT+TGG - chr7_3:82551283-82551302 None:intergenic 30.0%
CTCCGAAAATTAAGCAAAAA+TGG - chr7_3:82551328-82551347 None:intergenic 30.0%
! ATTTGGAATCTACAACTGTT+AGG + chr7_3:82551428-82551447 Msa1130390:CDS 30.0%
! TTTGGAATCTACAACTGTTA+GGG + chr7_3:82551429-82551448 Msa1130390:CDS 30.0%
! ATTCTTTGCTTCAAGTTATC+AGG - chr7_3:82551514-82551533 None:intergenic 30.0%
! GAAGGTATGAACAATACAAA+TGG + chr7_3:82551536-82551555 Msa1130390:CDS 30.0%
TACAAATGGCAAGAAAATAG+AGG + chr7_3:82551550-82551569 Msa1130390:CDS 30.0%
ATTTAATTGTGGGATGGTTA+TGG - chr7_3:82551675-82551694 None:intergenic 30.0%
!! AACTCATTATTTCTAATGCC+TGG + chr7_3:82551954-82551973 Msa1130390:CDS 30.0%
! GTTGATAAGACGTCTAAATT+GGG - chr7_3:82552123-82552142 None:intergenic 30.0%
! TGTTGATAAGACGTCTAAAT+TGG - chr7_3:82552124-82552143 None:intergenic 30.0%
TTGTTGTATAAGTATGCAGT+AGG + chr7_3:82552632-82552651 Msa1130390:three_prime_UTR 30.0%
! GCTTTATTCTACATGCAAAA+TGG - chr7_3:82552669-82552688 None:intergenic 30.0%
! TGTAGAATAAAGCACTTTGT+TGG + chr7_3:82552676-82552695 Msa1130390:three_prime_UTR 30.0%
!! GTGCTCCGTTATTAATTTGT+AGG + chr7_3:82548371-82548390 Msa1130390:five_prime_UTR 35.0%
AGAAAGTGGAAGGAAATTGA+GGG - chr7_3:82548553-82548572 None:intergenic 35.0%
TAGAAAGTGGAAGGAAATTG+AGG - chr7_3:82548554-82548573 None:intergenic 35.0%
!!! TGTTTGTTTTGTTTCCAAGG+AGG - chr7_3:82548671-82548690 None:intergenic 35.0%
TCTCCAAAAGTCAATTACAC+AGG - chr7_3:82549041-82549060 None:intergenic 35.0%
CAAAGGGACTTAAATTTGTG+AGG + chr7_3:82549253-82549272 Msa1130390:CDS 35.0%
ATATGTCTCTTTGTCATTCC+AGG + chr7_3:82549372-82549391 Msa1130390:intron 35.0%
! GTCATCTTTTAGTATAGAGC+AGG + chr7_3:82549415-82549434 Msa1130390:CDS 35.0%
TTCAAAACAGCACTTACACT+TGG - chr7_3:82549470-82549489 None:intergenic 35.0%
!!! AGTGCTGTTTTGAACAGTAT+TGG + chr7_3:82549476-82549495 Msa1130390:CDS 35.0%
ATTGGAAGAAGATTTGTGAG+TGG + chr7_3:82549494-82549513 Msa1130390:CDS 35.0%
TTGTCTGTCCTTCATTTACA+GGG - chr7_3:82549565-82549584 None:intergenic 35.0%
TTTGTCTGTCCTTCATTTAC+AGG - chr7_3:82549566-82549585 None:intergenic 35.0%
!! TTGTTCCATTTCTGAAGCAT+AGG - chr7_3:82549632-82549651 None:intergenic 35.0%
!! TTTTGTTTACCGACAATCAC+TGG - chr7_3:82549713-82549732 None:intergenic 35.0%
ATCATCTTTCAGTTCAGAAC+CGG + chr7_3:82549812-82549831 Msa1130390:CDS 35.0%
! TATCTTTTCATTATGGCGAC+AGG - chr7_3:82549890-82549909 None:intergenic 35.0%
ATCAATTATTCCACTTCCAC+AGG + chr7_3:82549940-82549959 Msa1130390:CDS 35.0%
TAGAGGATCAGAATGAGTAT+TGG - chr7_3:82550019-82550038 None:intergenic 35.0%
GATGTAAAGGATCCATGTTA+TGG + chr7_3:82550061-82550080 Msa1130390:intron 35.0%
TTACTTTGGCTACCATAACA+TGG - chr7_3:82550076-82550095 None:intergenic 35.0%
ATTCCAAACTTGAAAAGCTC+GGG + chr7_3:82550258-82550277 Msa1130390:intron 35.0%
! GATCACCAAATTCTTGTTTG+TGG + chr7_3:82550518-82550537 Msa1130390:intron 35.0%
TTGTGTCCTTGATTTCATCA+GGG - chr7_3:82550719-82550738 None:intergenic 35.0%
TTTGTGTCCTTGATTTCATC+AGG - chr7_3:82550720-82550739 None:intergenic 35.0%
! GACACAAAGACCTTCAATTT+TGG + chr7_3:82550732-82550751 Msa1130390:CDS 35.0%
! AGAAGTTCTTCTACTGCTTT+TGG + chr7_3:82550811-82550830 Msa1130390:CDS 35.0%
!!! TTGCATCCCAGTTTTTTCAA+TGG + chr7_3:82550919-82550938 Msa1130390:intron 35.0%
TGACATAAGTAGTTGTCTTG+AGG - chr7_3:82551010-82551029 None:intergenic 35.0%
CAAGACAACTACTTATGTCA+CGG + chr7_3:82551010-82551029 Msa1130390:CDS 35.0%
AATGGCAATGAAAATCGCAA+AGG - chr7_3:82551042-82551061 None:intergenic 35.0%
!!! GCGATTTTCATTGCCATTTT+TGG + chr7_3:82551044-82551063 Msa1130390:CDS 35.0%
! TGCAGGTAAGTGCTATTAAT+AGG + chr7_3:82551099-82551118 Msa1130390:intron 35.0%
! CGACATTTTCTATGGACAAT+TGG + chr7_3:82551200-82551219 Msa1130390:intron 35.0%
!!! TCAGTGGTTTTGGATTTTTG+GGG - chr7_3:82551281-82551300 None:intergenic 35.0%
!! TAAGCAAAAATGGACTGCAA+TGG - chr7_3:82551318-82551337 None:intergenic 35.0%
ACTTGAAGCAAAGAATTCGA+AGG + chr7_3:82551518-82551537 Msa1130390:CDS 35.0%
!! TGTCTCTTCTGAGATCTTTA+GGG - chr7_3:82551606-82551625 None:intergenic 35.0%
!! ATGTCTCTTCTGAGATCTTT+AGG - chr7_3:82551607-82551626 None:intergenic 35.0%
! GCATCCATTTTCTCAAACAT+TGG - chr7_3:82551777-82551796 None:intergenic 35.0%
!! ATGAAAAGCATCTCATCAAC+TGG - chr7_3:82551879-82551898 None:intergenic 35.0%
! TCTACTGTTCTAGTTGAAGT+AGG - chr7_3:82552041-82552060 None:intergenic 35.0%
AGCAACAAACTTCAAGTCAT+CGG - chr7_3:82552099-82552118 None:intergenic 35.0%
ATGCATATATTGTTGCACCA+AGG - chr7_3:82552396-82552415 None:intergenic 35.0%
GTGCAACAATATATGCATCA+AGG + chr7_3:82552398-82552417 Msa1130390:CDS 35.0%
!! TGTTTTTGAGCAGTGAAATC+AGG - chr7_3:82552520-82552539 None:intergenic 35.0%
AACAAGAATAGCTACCTCCT+TGG + chr7_3:82548654-82548673 Msa1130390:five_prime_UTR 40.0%
!! CTCTGAAACCTGAAAGTACA+TGG + chr7_3:82548821-82548840 Msa1130390:intron 40.0%
CTACATGACCATGTACTTTC+AGG - chr7_3:82548832-82548851 None:intergenic 40.0%
TTCCTACATATGTGGACATG+TGG + chr7_3:82548952-82548971 Msa1130390:intron 40.0%
AACCACATGTCCACATATGT+AGG - chr7_3:82548957-82548976 None:intergenic 40.0%
!! GTGCCTGTGTAATTGACTTT+TGG + chr7_3:82549035-82549054 Msa1130390:intron 40.0%
TTGTGTTGTGTTGAGTACAG+TGG + chr7_3:82549203-82549222 Msa1130390:five_prime_UTR 40.0%
GGACTTAAATTTGTGAGGTG+AGG + chr7_3:82549258-82549277 Msa1130390:intron 40.0%
! GTCATTCCAGGTTTGATGAT+TGG + chr7_3:82549384-82549403 Msa1130390:intron 40.0%
TGATCTCCAATCATCAAACC+TGG - chr7_3:82549393-82549412 None:intergenic 40.0%
ATTCAGAAGACCCTCTTCAA+TGG + chr7_3:82549535-82549554 Msa1130390:CDS 40.0%
ATGGTTCACCCTGTAAATGA+AGG + chr7_3:82549554-82549573 Msa1130390:CDS 40.0%
TGAAGGACAGACAAAGAAGT+TGG + chr7_3:82549571-82549590 Msa1130390:CDS 40.0%
CGCAAAATTCTTGATCCACA+GGG + chr7_3:82549605-82549624 Msa1130390:CDS 40.0%
GCAAAATTCTTGATCCACAG+GGG + chr7_3:82549606-82549625 Msa1130390:CDS 40.0%
CTTTGTAATCACATGTGTGC+TGG + chr7_3:82549655-82549674 Msa1130390:CDS 40.0%
! AGAAGAAGGCGCAATAAATC+CGG - chr7_3:82549834-82549853 None:intergenic 40.0%
CTTCCAAAAACACGAGAAGA+AGG - chr7_3:82549848-82549867 None:intergenic 40.0%
!!! TCTTCTCGTGTTTTTGGAAG+AGG + chr7_3:82549848-82549867 Msa1130390:CDS 40.0%
ATGTAAGATACCTGTGGAAG+TGG - chr7_3:82549953-82549972 None:intergenic 40.0%
ACATGGATCCTTTACATCCA+TGG - chr7_3:82550059-82550078 None:intergenic 40.0%
CATATTGACAGAGACAGCAT+GGG + chr7_3:82550386-82550405 Msa1130390:CDS 40.0%
CACAGCCACAAACAAGAATT+TGG - chr7_3:82550526-82550545 None:intergenic 40.0%
! CAAATTCTTGTTTGTGGCTG+TGG + chr7_3:82550524-82550543 Msa1130390:intron 40.0%
AGCTAACTGGTATCTGCTTT+CGG + chr7_3:82550563-82550582 Msa1130390:CDS 40.0%
! CATGATTCATTCTTGGGTTG+TGG + chr7_3:82550639-82550658 Msa1130390:CDS 40.0%
! GAACTTCTGAGGAAAATCTG+TGG - chr7_3:82550799-82550818 None:intergenic 40.0%
AAGCAGTAGAAGAACTTCTG+AGG - chr7_3:82550810-82550829 None:intergenic 40.0%
!! AGTTCTTCTACTGCTTTTGG+TGG + chr7_3:82550814-82550833 Msa1130390:CDS 40.0%
!! GTTCTTCTACTGCTTTTGGT+GGG + chr7_3:82550815-82550834 Msa1130390:CDS 40.0%
!! TTCTTCTACTGCTTTTGGTG+GGG + chr7_3:82550816-82550835 Msa1130390:CDS 40.0%
! GGGTTTGCGAAATTTAAGGT+TGG + chr7_3:82550836-82550855 Msa1130390:intron 40.0%
! TAGTGTGGAATCAGTGGTTT+TGG - chr7_3:82551291-82551310 None:intergenic 40.0%
GGTGCCAATGTTTGAGAAAA+TGG + chr7_3:82551770-82551789 Msa1130390:intron 40.0%
GAAAATGGATGCGCAATTGT+TGG + chr7_3:82551785-82551804 Msa1130390:CDS 40.0%
CTCTTCTCTGTATACAGAAC+TGG - chr7_3:82551834-82551853 None:intergenic 40.0%
! GAGATGCTTTTCATTATGCG+AGG + chr7_3:82551885-82551904 Msa1130390:CDS 40.0%
!! TCTTCCACCATTTGTTGTCA+TGG - chr7_3:82551922-82551941 None:intergenic 40.0%
! ACAACAAATGGTGGAAGAAC+TGG + chr7_3:82551924-82551943 Msa1130390:CDS 40.0%
! CTAATGCCTGGTGATTTTTG+TGG + chr7_3:82551966-82551985 Msa1130390:CDS 40.0%
! TGGAGAGGAGCTTTTAACAT+GGG + chr7_3:82551986-82552005 Msa1130390:CDS 40.0%
AGTTGAAGTAGGTAGATTCG+AGG - chr7_3:82552030-82552049 None:intergenic 40.0%
! AGTTGAAGCATTTGCACTCA+AGG + chr7_3:82552073-82552092 Msa1130390:CDS 40.0%
AACAACTCCAACACACTTTC+AGG + chr7_3:82552147-82552166 Msa1130390:CDS 40.0%
AGACAAGCTACAAGATGCTT+TGG + chr7_3:82552345-82552364 Msa1130390:CDS 40.0%
ACAAGATGCTTTGGCAAATG+AGG + chr7_3:82552354-82552373 Msa1130390:CDS 40.0%
GAAGGATCAACTATAAGCCT+TGG + chr7_3:82552376-82552395 Msa1130390:CDS 40.0%
AAAAGAGGTAGTAGTCTCTG+CGG - chr7_3:82552478-82552497 None:intergenic 40.0%
AGTGGAAGGAAATTGAGGGA+GGG - chr7_3:82548549-82548568 None:intergenic 45.0%
AAGTGGAAGGAAATTGAGGG+AGG - chr7_3:82548550-82548569 None:intergenic 45.0%
TCATCCATTGTGGTTGAGCT+TGG + chr7_3:82549004-82549023 Msa1130390:intron 45.0%
CAAACCAAGCTCAACCACAA+TGG - chr7_3:82549011-82549030 None:intergenic 45.0%
ACAGGGTGAACCATTGAAGA+GGG - chr7_3:82549548-82549567 None:intergenic 45.0%
TACAGGGTGAACCATTGAAG+AGG - chr7_3:82549549-82549568 None:intergenic 45.0%
GCGCAAAATTCTTGATCCAC+AGG + chr7_3:82549604-82549623 Msa1130390:CDS 45.0%
! ATGTGTGCTGGCAATTTCTG+TGG + chr7_3:82549667-82549686 Msa1130390:CDS 45.0%
CTTTACATCCATGGAGAGAG+CGG - chr7_3:82550050-82550069 None:intergenic 45.0%
!!! CTCGGGTCCATTTTTAGCAA+AGG + chr7_3:82550275-82550294 Msa1130390:intron 45.0%
GCATATTGACAGAGACAGCA+TGG + chr7_3:82550385-82550404 Msa1130390:CDS 45.0%
!! CATGACTTGCTAGCATGTAG+AGG - chr7_3:82550434-82550453 None:intergenic 45.0%
TCTGCTTTCGGTAGAATCAC+AGG + chr7_3:82550575-82550594 Msa1130390:CDS 45.0%
TTTCGGTAGAATCACAGGTG+CGG + chr7_3:82550580-82550599 Msa1130390:CDS 45.0%
GGTTGACCCTGATGAAATCA+AGG + chr7_3:82550710-82550729 Msa1130390:CDS 45.0%
CGATGCTCTACAATCACTTG+TGG + chr7_3:82550764-82550783 Msa1130390:CDS 45.0%
GGTGGGGTTTGCGAAATTTA+AGG + chr7_3:82550832-82550851 Msa1130390:CDS 45.0%
GGAAGTTAGTGTGGAATCAG+TGG - chr7_3:82551297-82551316 None:intergenic 45.0%
GACTGCAATGGAAGTTAGTG+TGG - chr7_3:82551306-82551325 None:intergenic 45.0%
GGAATCTACAACTGTTAGGG+AGG + chr7_3:82551432-82551451 Msa1130390:CDS 45.0%
AGGAAGAGATGAGAGTGAAG+AGG + chr7_3:82551452-82551471 Msa1130390:CDS 45.0%
AAGAGATGAGAGTGAAGAGG+AGG + chr7_3:82551455-82551474 Msa1130390:CDS 45.0%
AGAGATGAGAGTGAAGAGGA+GGG + chr7_3:82551456-82551475 Msa1130390:CDS 45.0%
!! CTCTTCTGAGATCTTTAGGG+AGG - chr7_3:82551603-82551622 None:intergenic 45.0%
GTCGCTACCATGACAACAAA+TGG + chr7_3:82551912-82551931 Msa1130390:CDS 45.0%
GCTACCATGACAACAAATGG+TGG + chr7_3:82551915-82551934 Msa1130390:CDS 45.0%
TCCTCTCCACAAAAATCACC+AGG - chr7_3:82551975-82551994 None:intergenic 45.0%
! GTGGAGAGGAGCTTTTAACA+TGG + chr7_3:82551985-82552004 Msa1130390:CDS 45.0%
! GGAGCTTTTAACATGGGCTT+TGG + chr7_3:82551992-82552011 Msa1130390:CDS 45.0%
TGAAGTAGGTAGATTCGAGG+AGG - chr7_3:82552027-82552046 None:intergenic 45.0%
! CTCCAACACACTTTCAGGTA+TGG + chr7_3:82552152-82552171 Msa1130390:intron 45.0%
! AGCCATACCTGAAAGTGTGT+TGG - chr7_3:82552157-82552176 None:intergenic 45.0%
CGTGTTTCATACAAGCAGCT+TGG + chr7_3:82552275-82552294 Msa1130390:CDS 45.0%
GATGCTTTGGCAAATGAGGA+AGG + chr7_3:82552358-82552377 Msa1130390:CDS 45.0%
AGGGGCCTATGCTTCAGAAA+TGG + chr7_3:82549624-82549643 Msa1130390:CDS 50.0%
! GCGCCTTCTTCTCGTGTTTT+TGG + chr7_3:82549842-82549861 Msa1130390:CDS 50.0%
CGCTCTCTCCATGGATGTAA+AGG + chr7_3:82550048-82550067 Msa1130390:intron 50.0%
!!! GGACCCGAGCTTTTCAAGTT+TGG - chr7_3:82550264-82550283 None:intergenic 50.0%
GGACGAATTCGCAGTAGTCT+TGG - chr7_3:82550336-82550355 None:intergenic 50.0%
GTTTGTGGCTGTGGCATATC+AGG + chr7_3:82550533-82550552 Msa1130390:intron 50.0%
ATCAGGTGGTTGGAGCTAAC+TGG + chr7_3:82550550-82550569 Msa1130390:intron 50.0%
TAGAATCACAGGTGCGGTGT+TGG + chr7_3:82550586-82550605 Msa1130390:CDS 50.0%
! GCCTGGTGATTTTTGTGGAG+AGG + chr7_3:82551971-82551990 Msa1130390:CDS 50.0%
GGTAGATTCGAGGAGGAGTT+TGG - chr7_3:82552020-82552039 None:intergenic 50.0%
GAAGGTCATATTCGCCGCAA+TGG + chr7_3:82552239-82552258 Msa1130390:intron 50.0%
ATTCGCCGCAATGGAAGACA+TGG + chr7_3:82552248-82552267 Msa1130390:CDS 50.0%
TTCGCCGCAATGGAAGACAT+GGG + chr7_3:82552249-82552268 Msa1130390:CDS 50.0%
! AAATCAGGCTCAGCTGGCTT+TGG - chr7_3:82552505-82552524 None:intergenic 50.0%
!! GTGGTTGAGCTTGGTTTGCG+TGG + chr7_3:82549013-82549032 Msa1130390:intron 55.0%
!! TTCTGAAGCATAGGCCCCTG+TGG - chr7_3:82549623-82549642 None:intergenic 55.0%
AGAGAGCGGCAAGGTTGTAG+AGG - chr7_3:82550036-82550055 None:intergenic 55.0%
TTGACAGAGACAGCATGGGC+TGG + chr7_3:82550390-82550409 Msa1130390:CDS 55.0%
TGTGGCTGTGGCATATCAGG+TGG + chr7_3:82550536-82550555 Msa1130390:intron 55.0%
GCTGTGGCATATCAGGTGGT+TGG + chr7_3:82550540-82550559 Msa1130390:intron 55.0%
AGAGGAGGGATGCAGAACGA+TGG + chr7_3:82551470-82551489 Msa1130390:CDS 55.0%
TCGCCGCAATGGAAGACATG+GGG + chr7_3:82552250-82552269 Msa1130390:CDS 55.0%
GCACCCCATGTCTTCCATTG+CGG - chr7_3:82552256-82552275 None:intergenic 55.0%
!! GCTGGCTTTGGAGGCAAAAG+AGG - chr7_3:82552493-82552512 None:intergenic 55.0%
GCAGTGAAATCAGGCTCAGC+TGG - chr7_3:82552511-82552530 None:intergenic 55.0%
CAACCTTGCCGCTCTCTCCA+TGG + chr7_3:82550039-82550058 Msa1130390:intron 60.0%
CATCCATGGAGAGAGCGGCA+AGG - chr7_3:82550045-82550064 None:intergenic 60.0%
!! TCAGGCTCAGCTGGCTTTGG+AGG - chr7_3:82552502-82552521 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 82548342 82552735 82548342 ID=Msa1130390;Name=Msa1130390
chr7_3 mRNA 82548342 82552735 82548342 ID=Msa1130390-mRNA-1;Parent=Msa1130390;Name=Msa1130390-mRNA-1;_AED=0.08;_eAED=0.08;_QI=435|0.87|0.88|1|0.87|1|9|192|689
chr7_3 exon 82548342 82548724 82548342 ID=Msa1130390-mRNA-1:exon:24327;Parent=Msa1130390-mRNA-1
chr7_3 exon 82549194 82549274 82549194 ID=Msa1130390-mRNA-1:exon:24328;Parent=Msa1130390-mRNA-1
chr7_3 exon 82549394 82549961 82549394 ID=Msa1130390-mRNA-1:exon:24329;Parent=Msa1130390-mRNA-1
chr7_3 exon 82550327 82550452 82550327 ID=Msa1130390-mRNA-1:exon:24330;Parent=Msa1130390-mRNA-1
chr7_3 exon 82550555 82550853 82550555 ID=Msa1130390-mRNA-1:exon:24331;Parent=Msa1130390-mRNA-1
chr7_3 exon 82550992 82551103 82550992 ID=Msa1130390-mRNA-1:exon:24332;Parent=Msa1130390-mRNA-1
chr7_3 exon 82551424 82551660 82551424 ID=Msa1130390-mRNA-1:exon:24333;Parent=Msa1130390-mRNA-1
chr7_3 exon 82551771 82552168 82551771 ID=Msa1130390-mRNA-1:exon:24334;Parent=Msa1130390-mRNA-1
chr7_3 exon 82552243 82552735 82552243 ID=Msa1130390-mRNA-1:exon:24335;Parent=Msa1130390-mRNA-1
chr7_3 five_prime_UTR 82548342 82548724 82548342 ID=Msa1130390-mRNA-1:five_prime_utr;Parent=Msa1130390-mRNA-1
chr7_3 five_prime_UTR 82549194 82549245 82549194 ID=Msa1130390-mRNA-1:five_prime_utr;Parent=Msa1130390-mRNA-1
chr7_3 CDS 82549246 82549274 82549246 ID=Msa1130390-mRNA-1:cds;Parent=Msa1130390-mRNA-1
chr7_3 CDS 82549394 82549961 82549394 ID=Msa1130390-mRNA-1:cds;Parent=Msa1130390-mRNA-1
chr7_3 CDS 82550327 82550452 82550327 ID=Msa1130390-mRNA-1:cds;Parent=Msa1130390-mRNA-1
chr7_3 CDS 82550555 82550853 82550555 ID=Msa1130390-mRNA-1:cds;Parent=Msa1130390-mRNA-1
chr7_3 CDS 82550992 82551103 82550992 ID=Msa1130390-mRNA-1:cds;Parent=Msa1130390-mRNA-1
chr7_3 CDS 82551424 82551660 82551424 ID=Msa1130390-mRNA-1:cds;Parent=Msa1130390-mRNA-1
chr7_3 CDS 82551771 82552168 82551771 ID=Msa1130390-mRNA-1:cds;Parent=Msa1130390-mRNA-1
chr7_3 CDS 82552243 82552543 82552243 ID=Msa1130390-mRNA-1:cds;Parent=Msa1130390-mRNA-1
chr7_3 three_prime_UTR 82552544 82552735 82552544 ID=Msa1130390-mRNA-1:three_prime_utr;Parent=Msa1130390-mRNA-1
Gene Sequence

>Msa1130390

ATGAATGCAAAGGGACTTAAATTTGTGAGGTTTGATGATTGGAGATCAGAGTCATCTTTTAGTATAGAGCAGGAAAACACTGTAAACAAAAGAAAAGAGAGACCAAGTGTAAGTGCTGTTTTGAACAGTATTGGAAGAAGATTTGTGAGTGGATCAGAGAAGATGAAGAAATTCAGAAGACCCTCTTCAATGGTTCACCCTGTAAATGAAGGACAGACAAAGAAGTTGGATTCTTCTAAGCGCAAAATTCTTGATCCACAGGGGCCTATGCTTCAGAAATGGAACAAAATCTTTGTAATCACATGTGTGCTGGCAATTTCTGTGGACCCTTTTTTCTTTTACATTCCAGTGATTGTCGGTAAACAAAAATGTCTTGATTTGGATGGAACATTGCAGACTACTATCAGTGTTCTTCGCACGTTCTTCGATCTTTTCTACATTCTTCGCATCATCTTTCAGTTCAGAACCGGATTTATTGCGCCTTCTTCTCGTGTTTTTGGAAGAGGTGAACTCATTGACGATCCTGTCGCCATAATGAAAAGATACTTGAGTTCTCATTTCATAGTTGACATTCTATCAATTATTCCACTTCCACAGTATGTGCCAAGACTACTGCGAATTCGTCCGCTATTCAAAGAAGTAACTAGAACTTCAGGCATATTGACAGAGACAGCATGGGCTGGAGCTGTTTACAATCTTTTCCTCTACATGCTAGCAAGTCATGTGGTTGGAGCTAACTGGTATCTGCTTTCGGTAGAATCACAGGTGCGGTGTTGGCGCAGAGTGATGAACAATGCTTCGATCTTTCATGATTCATTCTTGGGTTGTGGACTGCGAAATGCAACAGTATTCTCACTTCTCAACAATACTTGTAGTTCGGTTGACCCTGATGAAATCAAGGACACAAAGACCTTCAATTTTGGAATATTTTACGATGCTCTACAATCACTTGTGGTTGATTCAACCACAGATTTTCCTCAGAAGTTCTTCTACTGCTTTTGGTGGGGTTTGCGAAATTTAAGTTCTCTTGGACAAAACCTCAAGACAACTACTTATGTCACGGAGATAGCCTTTGCGATTTTCATTGCCATTTTTGGATTGGTTTTATTCGCATTACTTATTGGAAACATGCAGAAATATTTGGAATCTACAACTGTTAGGGAGGAAGAGATGAGAGTGAAGAGGAGGGATGCAGAACGATGGATGTCTCATCGTATGTTACCTGATAACTTGAAGCAAAGAATTCGAAGGTATGAACAATACAAATGGCAAGAAAATAGAGGTGTTGAAGAAGAAACTTTAATTCACAACCTCCCTAAAGATCTCAGAAGAGACATAAAGCGTCATCTTTGCTTAGCTTTAGTGAAAAAAGTGCCAATGTTTGAGAAAATGGATGCGCAATTGTTGGATGCAATGTGTGATAGACTGAAGCCAGTTCTGTATACAGAGAAGAGCTGCATTGTTCGCGAAGAAGATCCAGTTGATGAGATGCTTTTCATTATGCGAGGAAAAGTCGCTACCATGACAACAAATGGTGGAAGAACTGGTTTCTTCAACTCATTATTTCTAATGCCTGGTGATTTTTGTGGAGAGGAGCTTTTAACATGGGCTTTGGATCCAAACTCCTCCTCGAATCTACCTACTTCAACTAGAACAGTAGAAACTATATCAGAAGTTGAAGCATTTGCACTCAAGGCCGATGACTTGAAGTTTGTTGCTTCCCAATTTAGACGTCTTATCAACAGCAAACAACTCCAACACACTTTCAGGTCATATTCGCCGCAATGGAAGACATGGGGTGCGTGTTTCATACAAGCAGCTTGGCGTCGATATTGTAAAAAGAAAATTGAGAGGACATTGCGTGAAGCAGAAGACAAGCTACAAGATGCTTTGGCAAATGAGGAAGGATCAACTATAAGCCTTGGTGCAACAATATATGCATCAAGGTTTGCTGCAAATGCATTAAAAAACTTGCGAGAAAATAACAGACAAAACAGAATGCCGCAGAGACTACTACCTCTTTTGCCTCCAAAGCCAGCTGAGCCTGATTTCACTGCTCAAAAACACTAG
Protein sequence

>Msa1130390

MNAKGLKFVRFDDWRSESSFSIEQENTVNKRKERPSVSAVLNSIGRRFVSGSEKMKKFRRPSSMVHPVNEGQTKKLDSSKRKILDPQGPMLQKWNKIFVITCVLAISVDPFFFYIPVIVGKQKCLDLDGTLQTTISVLRTFFDLFYILRIIFQFRTGFIAPSSRVFGRGELIDDPVAIMKRYLSSHFIVDILSIIPLPQYVPRLLRIRPLFKEVTRTSGILTETAWAGAVYNLFLYMLASHVVGANWYLLSVESQVRCWRRVMNNASIFHDSFLGCGLRNATVFSLLNNTCSSVDPDEIKDTKTFNFGIFYDALQSLVVDSTTDFPQKFFYCFWWGLRNLSSLGQNLKTTTYVTEIAFAIFIAIFGLVLFALLIGNMQKYLESTTVREEEMRVKRRDAERWMSHRMLPDNLKQRIRRYEQYKWQENRGVEEETLIHNLPKDLRRDIKRHLCLALVKKVPMFEKMDAQLLDAMCDRLKPVLYTEKSCIVREEDPVDEMLFIMRGKVATMTTNGGRTGFFNSLFLMPGDFCGEELLTWALDPNSSSNLPTSTRTVETISEVEAFALKADDLKFVASQFRRLINSKQLQHTFRSYSPQWKTWGACFIQAAWRRYCKKKIERTLREAEDKLQDALANEEGSTISLGATIYASRFAANALKNLRENNRQNRMPQRLLPLLPPKPAEPDFTAQKH*