Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0711180 | AES93601.1 | 88.286 | 350 | 8 | 3 | 1 | 350 | 1 | 317 | 0.0 | 605 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0711180 | sp|Q9SUG3|ITPK3_ARATH | 67.155 | 341 | 81 | 3 | 13 | 353 | 38 | 347 | 4.68e-152 | 434 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0711180 | G7K0Z3 | 88.286 | 350 | 8 | 3 | 1 | 350 | 1 | 317 | 0.0 | 605 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0620420 | Msa0711180 | 0.815853 | 7.471387e-52 | -8.615850e-47 |
| Msa0711180 | Msa0756630 | -0.811953 | 5.409163e-51 | -8.615850e-47 |
| Msa0711180 | Msa0830270 | 0.821563 | 3.778565e-53 | -8.615850e-47 |
| Msa0711180 | Msa0894890 | 0.816463 | 5.459641e-52 | -8.615850e-47 |
| Msa0711180 | Msa1217860 | 0.800991 | 1.111628e-48 | -8.615850e-47 |
| Msa0711180 | Msa1319650 | 0.807515 | 4.867306e-50 | -8.615850e-47 |
| Msa0711180 | Msa1380250 | 0.840292 | 9.493609e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0711180 | MtrunA17_Chr5g0393881 | 88.286 | 350 | 8 | 3 | 1 | 350 | 1 | 317 | 0.0 | 602 |
| Msa0711180 | MtrunA17_Chr1g0206731 | 73.235 | 340 | 62 | 2 | 14 | 353 | 29 | 339 | 2.28e-170 | 478 |
| Msa0711180 | MtrunA17_Chr8g0366491 | 39.167 | 360 | 166 | 10 | 12 | 355 | 3 | 325 | 1.04e-76 | 241 |
| Msa0711180 | MtrunA17_Chr4g0059021 | 37.015 | 335 | 175 | 5 | 18 | 347 | 10 | 313 | 1.24e-67 | 215 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0711180 | AT4G08170.2 | 67.155 | 341 | 81 | 3 | 13 | 353 | 38 | 347 | 4.76e-153 | 434 |
| Msa0711180 | AT4G33770.1 | 61.765 | 340 | 99 | 3 | 15 | 354 | 80 | 388 | 1.47e-136 | 394 |
| Msa0711180 | AT4G33770.2 | 59.692 | 325 | 96 | 4 | 30 | 354 | 6 | 295 | 1.41e-124 | 360 |
| Msa0711180 | AT4G08170.1 | 66.901 | 284 | 63 | 3 | 70 | 353 | 7 | 259 | 1.80e-122 | 353 |
| Msa0711180 | AT4G08170.3 | 66.667 | 249 | 52 | 3 | 105 | 353 | 1 | 218 | 3.59e-102 | 300 |
| Msa0711180 | AT4G08170.6 | 66.667 | 249 | 52 | 3 | 105 | 353 | 1 | 218 | 3.59e-102 | 300 |
| Msa0711180 | AT4G08170.5 | 66.667 | 249 | 52 | 3 | 105 | 353 | 1 | 218 | 3.59e-102 | 300 |
| Msa0711180 | AT4G08170.7 | 66.667 | 249 | 52 | 3 | 105 | 353 | 1 | 218 | 3.59e-102 | 300 |
| Msa0711180 | AT4G08170.4 | 66.667 | 249 | 52 | 3 | 105 | 353 | 1 | 218 | 3.59e-102 | 300 |
| Msa0711180 | AT4G33770.3 | 57.200 | 250 | 76 | 3 | 105 | 354 | 1 | 219 | 4.94e-84 | 254 |
| Msa0711180 | AT5G16760.1 | 37.500 | 344 | 175 | 6 | 13 | 349 | 6 | 316 | 1.54e-70 | 223 |
Find 96 sgRNAs with CRISPR-Local
Find 297 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTTGAAAATGTGTTAAA+TGG | 0.142126 | 5_1:+3012462 | Msa0711180:three_prime_UTR |
| ACATCCACCAAAACCTTTAT+TGG | 0.171794 | 5_1:+3011858 | Msa0711180:CDS |
| CAAGCTTCACCCGCAATATT+TGG | 0.185898 | 5_1:-3011726 | None:intergenic |
| TCCAAGTTGTTTCAGTTTAT+AGG | 0.238870 | 5_1:-3008011 | None:intergenic |
| AATACACAAAATAGAATCTT+TGG | 0.254157 | 5_1:+3008039 | Msa0711180:five_prime_UTR |
| TCATGTGTACTGTAGGAATA+AGG | 0.297738 | 5_1:+3008924 | Msa0711180:intron |
| ATTTATAATATACTATAGTT+TGG | 0.301720 | 5_1:-3007983 | None:intergenic |
| GTTTATGTTTGAAGGATTAC+AGG | 0.302017 | 5_1:+3010691 | Msa0711180:intron |
| ATTGATATCAATTACTTTCC+AGG | 0.307544 | 5_1:+3012059 | Msa0711180:CDS |
| TATTGTTGGCGAAACTATAA+AGG | 0.308980 | 5_1:+3011584 | Msa0711180:CDS |
| TTCTGCAGATGAAGCTGATT+TGG | 0.315924 | 5_1:+3011701 | Msa0711180:CDS |
| CTTGCAAGGGCAATAAAGTT+TGG | 0.318995 | 5_1:-3008191 | None:intergenic |
| AGCCTCTCCAATAAAGGTTT+TGG | 0.327994 | 5_1:-3011865 | None:intergenic |
| CTTCAAGAGTTTGTCAATCA+TGG | 0.331239 | 5_1:+3011417 | Msa0711180:CDS |
| CTCTTTAAGATTTATATTGT+TGG | 0.331829 | 5_1:+3011570 | Msa0711180:CDS |
| CATGAATTGCTGGGTGTTGA+TGG | 0.353479 | 5_1:+3011642 | Msa0711180:CDS |
| AATCAGTAACATGTTAATTC+CGG | 0.360602 | 5_1:+3012407 | Msa0711180:three_prime_UTR |
| CTTGCAAGCCTCTCCAATAA+AGG | 0.363119 | 5_1:-3011871 | None:intergenic |
| TTTCTTCTTCTTTGATGTTA+AGG | 0.374426 | 5_1:-3008156 | None:intergenic |
| GCACTCCCATCCACAACTAA+TGG | 0.388274 | 5_1:-3011327 | None:intergenic |
| GTTTGATGTTGTCTTGCATA+AGG | 0.402731 | 5_1:+3008999 | Msa0711180:CDS |
| TAATATACTATAGTTTGGTT+TGG | 0.405324 | 5_1:-3007978 | None:intergenic |
| CACATGAAACTCTTGGAAAT+CGG | 0.406306 | 5_1:-3011671 | None:intergenic |
| CATGTGTACTGTAGGAATAA+GGG | 0.417116 | 5_1:+3008925 | Msa0711180:intron |
| GAAGAGGAGAAAGTGGTTGT+TGG | 0.424695 | 5_1:+3008128 | Msa0711180:CDS |
| AATTCATGTTTGCCGACATT+AGG | 0.424932 | 5_1:-3011627 | None:intergenic |
| TGACATAAGTTGTACTTGCC+TGG | 0.426212 | 5_1:-3012077 | None:intergenic |
| CTCTTGAAAATGTGTTAAAT+GGG | 0.430454 | 5_1:+3012463 | Msa0711180:three_prime_UTR |
| AGAAGAAGAAGAGGAGAAAG+TGG | 0.430959 | 5_1:+3008121 | Msa0711180:CDS |
| TATTCTTCACAAGGCTAAGT+AGG | 0.437233 | 5_1:-3012292 | None:intergenic |
| TGTTCAACATTGATATGATA+CGG | 0.438246 | 5_1:+3012006 | Msa0711180:CDS |
| TGTCGGCAAACATGAATTGC+TGG | 0.445133 | 5_1:+3011632 | Msa0711180:CDS |
| GATTTGGATCCAAATATTGC+GGG | 0.452610 | 5_1:+3011717 | Msa0711180:CDS |
| TCCAGCCTTAGTGACTTCAT+AGG | 0.454427 | 5_1:-3010981 | None:intergenic |
| CCCTATGAAGTCACTAAGGC+TGG | 0.457123 | 5_1:+3010980 | Msa0711180:CDS |
| AGTTGGCGAGTGAGTTAGAA+AGG | 0.461691 | 5_1:-3012509 | None:intergenic |
| AGCAAGTGCTGAATTGCATC+TGG | 0.465232 | 5_1:-3010747 | None:intergenic |
| ATTTGTCATTCCCAGTTGCC+AGG | 0.467034 | 5_1:+3009127 | Msa0711180:intron |
| GCTGCTGCACATGAAACTCT+TGG | 0.473192 | 5_1:-3011678 | None:intergenic |
| GGGTCAAGGATGGTTACTTC+GGG | 0.473925 | 5_1:-3010723 | None:intergenic |
| CCAGCCTTAGTGACTTCATA+GGG | 0.480109 | 5_1:-3010980 | None:intergenic |
| AATAAGTGTAAGAAGAAGAA+TGG | 0.482097 | 5_1:+3012311 | Msa0711180:CDS |
| ATAAATATGTGTTCATACTC+TGG | 0.483448 | 5_1:-3012263 | None:intergenic |
| GGAGGTGGGGTTTACACTGC+AGG | 0.484575 | 5_1:+3011540 | Msa0711180:intron |
| GCAAAACCATTAGTTGTGGA+TGG | 0.496864 | 5_1:+3011321 | Msa0711180:CDS |
| TCCTATAAACTGAAACAACT+TGG | 0.501471 | 5_1:+3008010 | Msa0711180:five_prime_UTR |
| AGGGTCAAGGATGGTTACTT+CGG | 0.504894 | 5_1:-3010724 | None:intergenic |
| GCCAAGGATAAAATGCTGAA+TGG | 0.505219 | 5_1:-3012365 | None:intergenic |
| GTTCAACATTGATATGATAC+GGG | 0.516800 | 5_1:+3012007 | Msa0711180:CDS |
| CTTTATTGGAGAGGCTTGCA+AGG | 0.518978 | 5_1:+3011872 | Msa0711180:CDS |
| GAATGAATGAATACCTTGCA+AGG | 0.528628 | 5_1:-3008205 | None:intergenic |
| ATGTGTTAAATGGGTTCTCA+AGG | 0.529853 | 5_1:+3012472 | Msa0711180:three_prime_UTR |
| AAGGGACCTCCGTCTTAGAC+TGG | 0.530240 | 5_1:+3011891 | Msa0711180:CDS |
| CACCAAAACCTTTATTGGAG+AGG | 0.533281 | 5_1:+3011863 | Msa0711180:CDS |
| AGTTGCAAAACCATTAGTTG+TGG | 0.542877 | 5_1:+3011317 | Msa0711180:intron |
| GGTTGGTGTTCCACAACAGT+TGG | 0.544219 | 5_1:+3010925 | Msa0711180:CDS |
| CAAACTTTATTGCCCTTGCA+AGG | 0.546012 | 5_1:+3008192 | Msa0711180:CDS |
| TATAAACTGAAACAACTTGG+AGG | 0.553180 | 5_1:+3008013 | Msa0711180:five_prime_UTR |
| CAAAACCATTAGTTGTGGAT+GGG | 0.553222 | 5_1:+3011322 | Msa0711180:CDS |
| TCATATCAATGTTGAACAAG+TGG | 0.556715 | 5_1:-3012001 | None:intergenic |
| TAACTTACAAGTTGCAACAA+AGG | 0.557019 | 5_1:-3012542 | None:intergenic |
| TTATGCAAGACAACATCAAA+CGG | 0.561000 | 5_1:-3008997 | None:intergenic |
| TATCCCCTATGAAGTCACTA+AGG | 0.566391 | 5_1:+3010976 | Msa0711180:CDS |
| ATTGATATGATACGGGAACA+TGG | 0.571666 | 5_1:+3012014 | Msa0711180:CDS |
| GCTGGACTGAAGTTACCGTT+AGG | 0.573505 | 5_1:+3010998 | Msa0711180:CDS |
| TGATTTGGATCCAAATATTG+CGG | 0.580725 | 5_1:+3011716 | Msa0711180:CDS |
| AACTCTTGAAGAACAAGTGG+TGG | 0.581060 | 5_1:-3011405 | None:intergenic |
| ATGTGTACTGTAGGAATAAG+GGG | 0.584925 | 5_1:+3008926 | Msa0711180:intron |
| GTTGGCGAGTGAGTTAGAAA+GGG | 0.588719 | 5_1:-3012508 | None:intergenic |
| AACGGACCTTGTTCTAACAT+CGG | 0.598617 | 5_1:-3008979 | None:intergenic |
| GGTAAGAAAATGAAGTTGAA+CGG | 0.598618 | 5_1:+3008086 | Msa0711180:exon |
| TTGATATGATACGGGAACAT+GGG | 0.599312 | 5_1:+3012015 | Msa0711180:CDS |
| ACAAACTCTTGAAGAACAAG+TGG | 0.601930 | 5_1:-3011408 | None:intergenic |
| TTTATTGGAGAGGCTTGCAA+GGG | 0.603132 | 5_1:+3011873 | Msa0711180:CDS |
| CGTTTCTCTCTACCTAATGT+CGG | 0.605707 | 5_1:+3011615 | Msa0711180:CDS |
| TGCATCTGGAGGGTCAAGGA+TGG | 0.607944 | 5_1:-3010733 | None:intergenic |
| TCTTACACTTATTCTTCACA+AGG | 0.608848 | 5_1:-3012301 | None:intergenic |
| AAGAAACCACTGCTAAGCCA+AGG | 0.617574 | 5_1:-3012381 | None:intergenic |
| AAGTGCTGAATTGCATCTGG+AGG | 0.621643 | 5_1:-3010744 | None:intergenic |
| GGTGGGGTTTACACTGCAGG+TGG | 0.624170 | 5_1:+3011543 | Msa0711180:intron |
| AATGAATGAATACCTTGCAA+GGG | 0.624486 | 5_1:-3008204 | None:intergenic |
| GATACGGGAACATGGGACAA+AGG | 0.626816 | 5_1:+3012022 | Msa0711180:CDS |
| ACAATCGATGCTACAAAATG+TGG | 0.627393 | 5_1:+3010776 | Msa0711180:CDS |
| TTTGAATTAGGGTTTGTGAG+AGG | 0.631319 | 5_1:+3008065 | Msa0711180:five_prime_UTR |
| CCCAGTTGCCAGGAAAAGAG+TGG | 0.634726 | 5_1:+3009137 | Msa0711180:intron |
| GTAAGCATACCAGTCTAAGA+CGG | 0.635402 | 5_1:-3011900 | None:intergenic |
| CTAAACTTATCTGACTGCCA+TGG | 0.643124 | 5_1:+3010804 | Msa0711180:CDS |
| AGCATACCAGTCTAAGACGG+AGG | 0.643723 | 5_1:-3011897 | None:intergenic |
| GTCGGCAAACATGAATTGCT+GGG | 0.643901 | 5_1:+3011633 | Msa0711180:CDS |
| AGTGCTGAATTGCATCTGGA+GGG | 0.651268 | 5_1:-3010743 | None:intergenic |
| TTAGTGATAACCAACTGTTG+TGG | 0.664885 | 5_1:-3010935 | None:intergenic |
| GCGAAACTATAAAGGTTGTG+AGG | 0.674225 | 5_1:+3011592 | Msa0711180:CDS |
| AGAGTGGTGTGAGATTATCG+AGG | 0.676364 | 5_1:+3009153 | Msa0711180:CDS |
| AACAAGCCGATGTTAGAACA+AGG | 0.679946 | 5_1:+3008973 | Msa0711180:CDS |
| GAATTGCATCTGGAGGGTCA+AGG | 0.694453 | 5_1:-3010737 | None:intergenic |
| CAGCCTTAGTGACTTCATAG+GGG | 0.732161 | 5_1:-3010979 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATAATATACTATAGTT+TGG | - | chr5_1:3007986-3008005 | None:intergenic | 10.0% |
| !!! | TTATCAACTTTTTAATTTTT+AGG | + | chr5_1:3010899-3010918 | Msa0711180:intron | 10.0% |
| !!! | TATCAACTTTTTAATTTTTA+GGG | + | chr5_1:3010900-3010919 | Msa0711180:intron | 10.0% |
| !! | AAAATAAAATAAATACCTAA+CGG | - | chr5_1:3011016-3011035 | None:intergenic | 10.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr5_1:3010162-3010181 | Msa0711180:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr5_1:3010162-3010181 | Msa0711180:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr5_1:3010162-3010181 | Msa0711180:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr5_1:3010162-3010181 | Msa0711180:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr5_1:3010162-3010181 | Msa0711180:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr5_1:3010162-3010181 | Msa0711180:intron | 100.0% |
| !! | AACTATTATTGATAGATTAA+GGG | - | chr5_1:3008276-3008295 | None:intergenic | 15.0% |
| !! | TAACTATTATTGATAGATTA+AGG | - | chr5_1:3008277-3008296 | None:intergenic | 15.0% |
| !!! | GAACAAATTATTTTTTAGTT+TGG | + | chr5_1:3008777-3008796 | Msa0711180:intron | 15.0% |
| !!! | AGAATTAGCTTTTTATTTTA+TGG | + | chr5_1:3009325-3009344 | Msa0711180:intron | 15.0% |
| !! | TTAATCTAAATAACATCAAT+AGG | + | chr5_1:3009438-3009457 | Msa0711180:intron | 15.0% |
| !!! | CCATAATATTTTAGTAAATA+TGG | - | chr5_1:3010066-3010085 | None:intergenic | 15.0% |
| !! | CCATATTTACTAAAATATTA+TGG | + | chr5_1:3010063-3010082 | Msa0711180:intron | 15.0% |
| !! | CTATATCTGAAAATTAAATT+GGG | - | chr5_1:3011235-3011254 | None:intergenic | 15.0% |
| !! | ACTATATCTGAAAATTAAAT+TGG | - | chr5_1:3011236-3011255 | None:intergenic | 15.0% |
| !!! | TTTTGTTTTTTAATCTGTTT+GGG | + | chr5_1:3011517-3011536 | Msa0711180:intron | 15.0% |
| !! | TAATATACTATAGTTTGGTT+TGG | - | chr5_1:3007981-3008000 | None:intergenic | 20.0% |
| !! | AATACACAAAATAGAATCTT+TGG | + | chr5_1:3008039-3008058 | Msa0711180:five_prime_UTR | 20.0% |
| !!! | AATCTTTGGATTTTTGAATT+AGG | + | chr5_1:3008053-3008072 | Msa0711180:five_prime_UTR | 20.0% |
| !!! | ATCTTTGGATTTTTGAATTA+GGG | + | chr5_1:3008054-3008073 | Msa0711180:five_prime_UTR | 20.0% |
| !! | GATATGATATATTAGAAAGA+AGG | - | chr5_1:3008344-3008363 | None:intergenic | 20.0% |
| !!! | TGTTTTTACAGAAAGTAAAA+AGG | - | chr5_1:3008660-3008679 | None:intergenic | 20.0% |
| !! | AATTGAAAACAATTGTAATG+AGG | - | chr5_1:3008698-3008717 | None:intergenic | 20.0% |
| !!! | CATTACAATTGTTTTCAATT+TGG | + | chr5_1:3008698-3008717 | Msa0711180:intron | 20.0% |
| !!! | TGGAAAAGTTATAATTCTTT+TGG | + | chr5_1:3010083-3010102 | Msa0711180:intron | 20.0% |
| !! | CTGATTTCATTATATCTATT+AGG | - | chr5_1:3010375-3010394 | None:intergenic | 20.0% |
| !!! | TAATGTTGGTAAATTGAATT+AGG | - | chr5_1:3010847-3010866 | None:intergenic | 20.0% |
| !! | TAATTCAATTTACCAACATT+AGG | + | chr5_1:3010846-3010865 | Msa0711180:intron | 20.0% |
| !!! | AAGTTGATAAATAACACAAA+TGG | - | chr5_1:3010889-3010908 | None:intergenic | 20.0% |
| !!! | AACTTTTTAATTTTTAGGGA+AGG | + | chr5_1:3010904-3010923 | Msa0711180:intron | 20.0% |
| !! | TTATCTGACAAATATATAAC+AGG | - | chr5_1:3011147-3011166 | None:intergenic | 20.0% |
| !! | AGAAGAATACAAAAAGATTA+AGG | - | chr5_1:3011491-3011510 | None:intergenic | 20.0% |
| !!! | CTTTTGTTTTTTAATCTGTT+TGG | + | chr5_1:3011516-3011535 | Msa0711180:intron | 20.0% |
| !!! | TTTGTTTTTTAATCTGTTTG+GGG | + | chr5_1:3011518-3011537 | Msa0711180:intron | 20.0% |
| !!! | CTCTTTAAGATTTATATTGT+TGG | + | chr5_1:3011570-3011589 | Msa0711180:CDS | 20.0% |
| !!! | ACCAATTTTTTTTTTCTTTC+CGG | - | chr5_1:3012429-3012448 | None:intergenic | 20.0% |
| !!! | TTATATATTTTCGACATTAG+TGG | + | chr5_1:3012562-3012581 | Msa0711180:three_prime_UTR | 20.0% |
| ! | TTTCTTCTTCTTTGATGTTA+AGG | - | chr5_1:3008159-3008178 | None:intergenic | 25.0% |
| ! | AAGAATGTAAATTGACATTC+CGG | - | chr5_1:3008592-3008611 | None:intergenic | 25.0% |
| !! | TTTAATCCCTATATTTTGCA+AGG | - | chr5_1:3008725-3008744 | None:intergenic | 25.0% |
| ! | TCAGTGAATTAAGTTTGAAA+CGG | + | chr5_1:3009265-3009284 | Msa0711180:intron | 25.0% |
| !!! | TTTTATTTTATGGCGTAACT+TGG | + | chr5_1:3009335-3009354 | Msa0711180:intron | 25.0% |
| ! | TTAATCATGCTTCTATTACT+TGG | + | chr5_1:3009725-3009744 | Msa0711180:intron | 25.0% |
| !! | TATTAGAGAGTTCTGATAAA+TGG | + | chr5_1:3010410-3010429 | Msa0711180:intron | 25.0% |
| !! | TGAAATATGTGAGAAGTTTT+TGG | + | chr5_1:3010441-3010460 | Msa0711180:intron | 25.0% |
| !! | TAGTCTATGAATTTTGTAAC+TGG | + | chr5_1:3010600-3010619 | Msa0711180:intron | 25.0% |
| ! | ATGTAGTAAATAAGTTACCA+TGG | - | chr5_1:3010824-3010843 | None:intergenic | 25.0% |
| ! | AGTAATGAAAAACCTAATGT+TGG | - | chr5_1:3010861-3010880 | None:intergenic | 25.0% |
| !!! | TTTTAATTTTTAGGGAAGGT+TGG | + | chr5_1:3010908-3010927 | Msa0711180:intron | 25.0% |
| !! | GCTATAATCGTAAATTTTCA+TGG | + | chr5_1:3011196-3011215 | Msa0711180:intron | 25.0% |
| ! | AGAAGAACACAAAAAGATTA+AGG | - | chr5_1:3011463-3011482 | None:intergenic | 25.0% |
| !!! | TTGTTTTTTAATCTGTTTGG+GGG | + | chr5_1:3011519-3011538 | Msa0711180:intron | 25.0% |
| ! | TGTTCAACATTGATATGATA+CGG | + | chr5_1:3012006-3012025 | Msa0711180:CDS | 25.0% |
| ! | ATTGATATCAATTACTTTCC+AGG | + | chr5_1:3012059-3012078 | Msa0711180:CDS | 25.0% |
| ! | ATAAATATGTGTTCATACTC+TGG | - | chr5_1:3012266-3012285 | None:intergenic | 25.0% |
| ! | AATAAGTGTAAGAAGAAGAA+TGG | + | chr5_1:3012311-3012330 | Msa0711180:CDS | 25.0% |
| ! | AATCAGTAACATGTTAATTC+CGG | + | chr5_1:3012407-3012426 | Msa0711180:three_prime_UTR | 25.0% |
| ! | TCCGGAAAGAAAAAAAAAAT+TGG | + | chr5_1:3012425-3012444 | Msa0711180:three_prime_UTR | 25.0% |
| ! | CTCTTGAAAATGTGTTAAAT+GGG | + | chr5_1:3012463-3012482 | Msa0711180:three_prime_UTR | 25.0% |
| TCCTATAAACTGAAACAACT+TGG | + | chr5_1:3008010-3008029 | Msa0711180:five_prime_UTR | 30.0% | |
| ! | TCCAAGTTGTTTCAGTTTAT+AGG | - | chr5_1:3008014-3008033 | None:intergenic | 30.0% |
| TATAAACTGAAACAACTTGG+AGG | + | chr5_1:3008013-3008032 | Msa0711180:five_prime_UTR | 30.0% | |
| GGTAAGAAAATGAAGTTGAA+CGG | + | chr5_1:3008086-3008105 | Msa0711180:exon | 30.0% | |
| AATGAATGAATACCTTGCAA+GGG | - | chr5_1:3008207-3008226 | None:intergenic | 30.0% | |
| ACCTTGAATTATCAAGCAAA+GGG | - | chr5_1:3008495-3008514 | None:intergenic | 30.0% | |
| AAAGGAAAGAGGAAAATGTA+TGG | - | chr5_1:3008617-3008636 | None:intergenic | 30.0% | |
| ! | ACATTTTCCTCTTTCCTTTT+TGG | + | chr5_1:3008618-3008637 | Msa0711180:intron | 30.0% |
| AAAACATCCAAAAAGGAAAG+AGG | - | chr5_1:3008628-3008647 | None:intergenic | 30.0% | |
| ! | TTTCCTTTTTGGATGTTTTC+TGG | + | chr5_1:3008629-3008648 | Msa0711180:intron | 30.0% |
| AATCCAGAAAACATCCAAAA+AGG | - | chr5_1:3008635-3008654 | None:intergenic | 30.0% | |
| ATTTGGTCCTTGCAAAATAT+AGG | + | chr5_1:3008715-3008734 | Msa0711180:intron | 30.0% | |
| TTTGGTCCTTGCAAAATATA+GGG | + | chr5_1:3008716-3008735 | Msa0711180:intron | 30.0% | |
| !! | CTCTGTTGATGAACTATTTT+AGG | + | chr5_1:3008874-3008893 | Msa0711180:intron | 30.0% |
| ! | CACTTAAGAATCAGTATTGA+AGG | - | chr5_1:3008901-3008920 | None:intergenic | 30.0% |
| TTATGCAAGACAACATCAAA+CGG | - | chr5_1:3009000-3009019 | None:intergenic | 30.0% | |
| TTCTAGTACAATCAGAAAGT+GGG | - | chr5_1:3009208-3009227 | None:intergenic | 30.0% | |
| ! | TTTCTAGTACAATCAGAAAG+TGG | - | chr5_1:3009209-3009228 | None:intergenic | 30.0% |
| GATTAATAATCCTCAGTTGT+TGG | - | chr5_1:3009424-3009443 | None:intergenic | 30.0% | |
| TAAATAACATCAATAGGCTG+TGG | + | chr5_1:3009444-3009463 | Msa0711180:intron | 30.0% | |
| GAAATATCAACCTATGGAAT+CGG | - | chr5_1:3009539-3009558 | None:intergenic | 30.0% | |
| AGCATAAAGGAAAGAAAATC+AGG | + | chr5_1:3009615-3009634 | Msa0711180:intron | 30.0% | |
| !!! | AACACTGCGTCATATTTTTT+TGG | - | chr5_1:3009793-3009812 | None:intergenic | 30.0% |
| GACAACTGTAATATTGACAA+TGG | + | chr5_1:3009978-3009997 | Msa0711180:intron | 30.0% | |
| AATATTGACAATGGCAAACT+TGG | + | chr5_1:3009987-3010006 | Msa0711180:intron | 30.0% | |
| TGTTCTCAATATTGAGACAA+TGG | - | chr5_1:3010014-3010033 | None:intergenic | 30.0% | |
| TGCTTACATAGATCTACAAT+GGG | - | chr5_1:3010198-3010217 | None:intergenic | 30.0% | |
| TATAATGAAATCAGCCTGAA+AGG | + | chr5_1:3010381-3010400 | Msa0711180:intron | 30.0% | |
| CTCTAATATTTGTTCCTTTC+AGG | - | chr5_1:3010398-3010417 | None:intergenic | 30.0% | |
| !!! | TTATTTTTTTGCCTCGTGAA+AGG | - | chr5_1:3010511-3010530 | None:intergenic | 30.0% |
| ! | TAGTCTGTGAATTTTGCATT+TGG | + | chr5_1:3010635-3010654 | Msa0711180:intron | 30.0% |
| ! | TGTGAATTTTGCATTTGGAT+GGG | + | chr5_1:3010640-3010659 | Msa0711180:intron | 30.0% |
| AAGTTTGTAGGTAAAATTGC+TGG | - | chr5_1:3010667-3010686 | None:intergenic | 30.0% | |
| ACATAAACAGACAAGTTTGT+AGG | - | chr5_1:3010679-3010698 | None:intergenic | 30.0% | |
| ACTTGTCTGTTTATGTTTGA+AGG | + | chr5_1:3010683-3010702 | Msa0711180:intron | 30.0% | |
| GTTTATGTTTGAAGGATTAC+AGG | + | chr5_1:3010691-3010710 | Msa0711180:intron | 30.0% | |
| TAGAGGAATAGATCTGATAT+CGG | + | chr5_1:3011062-3011081 | Msa0711180:intron | 30.0% | |
| AAATGCACTCAGATGATATA+TGG | - | chr5_1:3011104-3011123 | None:intergenic | 30.0% | |
| TATTGTTGGCGAAACTATAA+AGG | + | chr5_1:3011584-3011603 | Msa0711180:CDS | 30.0% | |
| ! | TGATTTGGATCCAAATATTG+CGG | + | chr5_1:3011716-3011735 | Msa0711180:CDS | 30.0% |
| !! | AAGTAGTCTTCATTTTTGTC+TGG | - | chr5_1:3011782-3011801 | None:intergenic | 30.0% |
| ! | ATAATGTCTGTCTTGATTTG+AGG | - | chr5_1:3011944-3011963 | None:intergenic | 30.0% |
| TCATATCAATGTTGAACAAG+TGG | - | chr5_1:3012004-3012023 | None:intergenic | 30.0% | |
| GTTCAACATTGATATGATAC+GGG | + | chr5_1:3012007-3012026 | Msa0711180:CDS | 30.0% | |
| ATAAAGCTGTTCAACCAATT+TGG | - | chr5_1:3012213-3012232 | None:intergenic | 30.0% | |
| TCTTACACTTATTCTTCACA+AGG | - | chr5_1:3012304-3012323 | None:intergenic | 30.0% | |
| !! | CCATTTAACACATTTTCAAG+AGG | - | chr5_1:3012465-3012484 | None:intergenic | 30.0% |
| CCTCTTGAAAATGTGTTAAA+TGG | + | chr5_1:3012462-3012481 | Msa0711180:three_prime_UTR | 30.0% | |
| TAACTTACAAGTTGCAACAA+AGG | - | chr5_1:3012545-3012564 | None:intergenic | 30.0% | |
| TTTGAATTAGGGTTTGTGAG+AGG | + | chr5_1:3008065-3008084 | Msa0711180:five_prime_UTR | 35.0% | |
| AGAAGAAGAAGAAGAAGAAG+AGG | + | chr5_1:3008112-3008131 | Msa0711180:CDS | 35.0% | |
| GAATGAATGAATACCTTGCA+AGG | - | chr5_1:3008208-3008227 | None:intergenic | 35.0% | |
| GCATATAAGGTGGAATATTC+TGG | - | chr5_1:3008473-3008492 | None:intergenic | 35.0% | |
| ! | TATCAAGCAAAGGGCATATA+AGG | - | chr5_1:3008486-3008505 | None:intergenic | 35.0% |
| GACCTTGAATTATCAAGCAA+AGG | - | chr5_1:3008496-3008515 | None:intergenic | 35.0% | |
| TTAATCCATCCATGCTTATC+CGG | + | chr5_1:3008570-3008589 | Msa0711180:intron | 35.0% | |
| TCATGTGTACTGTAGGAATA+AGG | + | chr5_1:3008924-3008943 | Msa0711180:intron | 35.0% | |
| CATGTGTACTGTAGGAATAA+GGG | + | chr5_1:3008925-3008944 | Msa0711180:intron | 35.0% | |
| ATGTGTACTGTAGGAATAAG+GGG | + | chr5_1:3008926-3008945 | Msa0711180:intron | 35.0% | |
| GTTTGATGTTGTCTTGCATA+AGG | + | chr5_1:3008999-3009018 | Msa0711180:CDS | 35.0% | |
| ! | GTGAATTAAGTTTGAAACGG+TGG | + | chr5_1:3009268-3009287 | Msa0711180:intron | 35.0% |
| TTCAAGTATTCCAACAACTG+AGG | + | chr5_1:3009411-3009430 | Msa0711180:intron | 35.0% | |
| AGTCTTCTCTGATAAGTCTA+AGG | - | chr5_1:3009501-3009520 | None:intergenic | 35.0% | |
| ATCAGGGAAATATCAACCTA+TGG | - | chr5_1:3009545-3009564 | None:intergenic | 35.0% | |
| ! | GGTTGATATTTCCCTGATTT+AGG | + | chr5_1:3009547-3009566 | Msa0711180:intron | 35.0% |
| AGTCAGATAGTCCTAAATCA+GGG | - | chr5_1:3009561-3009580 | None:intergenic | 35.0% | |
| AAGTCAGATAGTCCTAAATC+AGG | - | chr5_1:3009562-3009581 | None:intergenic | 35.0% | |
| ! | TGATTTAGGACTATCTGACT+TGG | + | chr5_1:3009561-3009580 | Msa0711180:intron | 35.0% |
| GAAGTATAAGCACAGCATAA+AGG | + | chr5_1:3009602-3009621 | Msa0711180:intron | 35.0% | |
| !! | GACGCAGTGTTTTTAAATAG+CGG | + | chr5_1:3009802-3009821 | Msa0711180:intron | 35.0% |
| CTGCTTACATAGATCTACAA+TGG | - | chr5_1:3010199-3010218 | None:intergenic | 35.0% | |
| AGGGCTGTTCAAATATAGAA+CGG | + | chr5_1:3010273-3010292 | Msa0711180:intron | 35.0% | |
| ACCAAGTTTCTTGAAGTACA+TGG | + | chr5_1:3010306-3010325 | Msa0711180:intron | 35.0% | |
| ! | GTCATATTTTTCCTTTCACG+AGG | + | chr5_1:3010497-3010516 | Msa0711180:intron | 35.0% |
| AGATTACAGCTTTGCCATAT+TGG | + | chr5_1:3010555-3010574 | Msa0711180:intron | 35.0% | |
| ! | CTGTGAATTTTGCATTTGGA+TGG | + | chr5_1:3010639-3010658 | Msa0711180:intron | 35.0% |
| ! | GTGAATTTTGCATTTGGATG+GGG | + | chr5_1:3010641-3010660 | Msa0711180:intron | 35.0% |
| ACAATCGATGCTACAAAATG+TGG | + | chr5_1:3010776-3010795 | Msa0711180:CDS | 35.0% | |
| TTAGTGATAACCAACTGTTG+TGG | - | chr5_1:3010938-3010957 | None:intergenic | 35.0% | |
| TCTAGTGAAAGTAAGGATCT+CGG | - | chr5_1:3011046-3011065 | None:intergenic | 35.0% | |
| CTATTCCTCTAGTGAAAGTA+AGG | - | chr5_1:3011053-3011072 | None:intergenic | 35.0% | |
| ATATAGTAGCATCTCTCTTG+TGG | + | chr5_1:3011249-3011268 | Msa0711180:intron | 35.0% | |
| AGTTGCAAAACCATTAGTTG+TGG | + | chr5_1:3011317-3011336 | Msa0711180:intron | 35.0% | |
| CAAAACCATTAGTTGTGGAT+GGG | + | chr5_1:3011322-3011341 | Msa0711180:CDS | 35.0% | |
| ACAAACTCTTGAAGAACAAG+TGG | - | chr5_1:3011411-3011430 | None:intergenic | 35.0% | |
| CTTCAAGAGTTTGTCAATCA+TGG | + | chr5_1:3011417-3011436 | Msa0711180:CDS | 35.0% | |
| !!! | TTTTTTAATCTGTTTGGGGG+AGG | + | chr5_1:3011522-3011541 | Msa0711180:intron | 35.0% |
| AATTCATGTTTGCCGACATT+AGG | - | chr5_1:3011630-3011649 | None:intergenic | 35.0% | |
| CACATGAAACTCTTGGAAAT+CGG | - | chr5_1:3011674-3011693 | None:intergenic | 35.0% | |
| GATTTGGATCCAAATATTGC+GGG | + | chr5_1:3011717-3011736 | Msa0711180:CDS | 35.0% | |
| ACATCCACCAAAACCTTTAT+TGG | + | chr5_1:3011858-3011877 | Msa0711180:CDS | 35.0% | |
| TTATATTCCATCACACCTCT+AGG | + | chr5_1:3011974-3011993 | Msa0711180:intron | 35.0% | |
| TATATTCCATCACACCTCTA+GGG | + | chr5_1:3011975-3011994 | Msa0711180:intron | 35.0% | |
| ATTGATATGATACGGGAACA+TGG | + | chr5_1:3012014-3012033 | Msa0711180:CDS | 35.0% | |
| TTGATATGATACGGGAACAT+GGG | + | chr5_1:3012015-3012034 | Msa0711180:CDS | 35.0% | |
| ACATACGCAATGCTCATAAA+TGG | - | chr5_1:3012174-3012193 | None:intergenic | 35.0% | |
| TTTATCTTTAACCCTCTGCA+GGG | + | chr5_1:3012228-3012247 | Msa0711180:intron | 35.0% | |
| TATTCTTCACAAGGCTAAGT+AGG | - | chr5_1:3012295-3012314 | None:intergenic | 35.0% | |
| ! | TCCATTCAGCATTTTATCCT+TGG | + | chr5_1:3012364-3012383 | Msa0711180:three_prime_UTR | 35.0% |
| ! | ATGTGTTAAATGGGTTCTCA+AGG | + | chr5_1:3012472-3012491 | Msa0711180:three_prime_UTR | 35.0% |
| !!! | ACAAAGGCATTTTGATCAGT+TGG | - | chr5_1:3012529-3012548 | None:intergenic | 35.0% |
| AGAAGAAGAAGAGGAGAAAG+TGG | + | chr5_1:3008121-3008140 | Msa0711180:CDS | 40.0% | |
| CTTGCAAGGGCAATAAAGTT+TGG | - | chr5_1:3008194-3008213 | None:intergenic | 40.0% | |
| CAAACTTTATTGCCCTTGCA+AGG | + | chr5_1:3008192-3008211 | Msa0711180:CDS | 40.0% | |
| ! | GCCCTTTGCTTGATAATTCA+AGG | + | chr5_1:3008491-3008510 | Msa0711180:intron | 40.0% |
| ATTGACATTCCGGATAAGCA+TGG | - | chr5_1:3008582-3008601 | None:intergenic | 40.0% | |
| CACTCACTGTGATGTTAAAG+TGG | - | chr5_1:3008804-3008823 | None:intergenic | 40.0% | |
| AGTGTTGTCATGTGTACTGT+AGG | + | chr5_1:3008917-3008936 | Msa0711180:intron | 40.0% | |
| AACAAGCCGATGTTAGAACA+AGG | + | chr5_1:3008973-3008992 | Msa0711180:CDS | 40.0% | |
| AACGGACCTTGTTCTAACAT+CGG | - | chr5_1:3008982-3009001 | None:intergenic | 40.0% | |
| TAGTACAATCAGAAAGTGGG+TGG | - | chr5_1:3009205-3009224 | None:intergenic | 40.0% | |
| ! | AAGTTTGAAACGGTGGTGAA+TGG | + | chr5_1:3009275-3009294 | Msa0711180:intron | 40.0% |
| CCGATCATGATTCATGATGA+GGG | - | chr5_1:3009374-3009393 | None:intergenic | 40.0% | |
| CCCTCATCATGAATCATGAT+CGG | + | chr5_1:3009371-3009390 | Msa0711180:intron | 40.0% | |
| TCCGATCATGATTCATGATG+AGG | - | chr5_1:3009375-3009394 | None:intergenic | 40.0% | |
| GAGACATTCTTGATCTCATC+AGG | + | chr5_1:3009653-3009672 | Msa0711180:intron | 40.0% | |
| CCAGTTGAAGTTTCTGTTGT+GGG | - | chr5_1:3010247-3010266 | None:intergenic | 40.0% | |
| ACCAGTTGAAGTTTCTGTTG+TGG | - | chr5_1:3010248-3010267 | None:intergenic | 40.0% | |
| GTTCTATATTTGAACAGCCC+TGG | - | chr5_1:3010274-3010293 | None:intergenic | 40.0% | |
| GCCATGTACTTCAAGAAACT+TGG | - | chr5_1:3010310-3010329 | None:intergenic | 40.0% | |
| TGGCAAAGCTGTAATCTCAA+AGG | - | chr5_1:3010552-3010571 | None:intergenic | 40.0% | |
| TACAGCTTTGCCATATTGGA+TGG | + | chr5_1:3010559-3010578 | Msa0711180:intron | 40.0% | |
| ACAGCTTTGCCATATTGGAT+GGG | + | chr5_1:3010560-3010579 | Msa0711180:intron | 40.0% | |
| CTAAACTTATCTGACTGCCA+TGG | + | chr5_1:3010804-3010823 | Msa0711180:CDS | 40.0% | |
| TATCCCCTATGAAGTCACTA+AGG | + | chr5_1:3010976-3010995 | Msa0711180:CDS | 40.0% | |
| GAGATCCTTACTTTCACTAG+AGG | + | chr5_1:3011045-3011064 | Msa0711180:intron | 40.0% | |
| GCAAAACCATTAGTTGTGGA+TGG | + | chr5_1:3011321-3011340 | Msa0711180:CDS | 40.0% | |
| AACTCTTGAAGAACAAGTGG+TGG | - | chr5_1:3011408-3011427 | None:intergenic | 40.0% | |
| GCGAAACTATAAAGGTTGTG+AGG | + | chr5_1:3011592-3011611 | Msa0711180:CDS | 40.0% | |
| CGTTTCTCTCTACCTAATGT+CGG | + | chr5_1:3011615-3011634 | Msa0711180:CDS | 40.0% | |
| TTCTGCAGATGAAGCTGATT+TGG | + | chr5_1:3011701-3011720 | Msa0711180:CDS | 40.0% | |
| TGTAACAACAGTGTCACAGT+AGG | - | chr5_1:3011836-3011855 | None:intergenic | 40.0% | |
| !! | CTCTCCAATAAAGGTTTTGG+TGG | - | chr5_1:3011865-3011884 | None:intergenic | 40.0% |
| CACCAAAACCTTTATTGGAG+AGG | + | chr5_1:3011863-3011882 | Msa0711180:CDS | 40.0% | |
| ! | AGCCTCTCCAATAAAGGTTT+TGG | - | chr5_1:3011868-3011887 | None:intergenic | 40.0% |
| TTTATTGGAGAGGCTTGCAA+GGG | + | chr5_1:3011873-3011892 | Msa0711180:CDS | 40.0% | |
| GTAAGCATACCAGTCTAAGA+CGG | - | chr5_1:3011903-3011922 | None:intergenic | 40.0% | |
| TGACATAAGTTGTACTTGCC+TGG | - | chr5_1:3012080-3012099 | None:intergenic | 40.0% | |
| AATTTGCCGTTGTGCCAAAT+TGG | + | chr5_1:3012196-3012215 | Msa0711180:intron | 40.0% | |
| GTTCAACCAATTTGGCACAA+CGG | - | chr5_1:3012205-3012224 | None:intergenic | 40.0% | |
| CTTTATCTTTAACCCTCTGC+AGG | + | chr5_1:3012227-3012246 | Msa0711180:intron | 40.0% | |
| ! | ATTTTTCCATACCCTGCAGA+GGG | - | chr5_1:3012242-3012261 | None:intergenic | 40.0% |
| GCCAAGGATAAAATGCTGAA+TGG | - | chr5_1:3012368-3012387 | None:intergenic | 40.0% | |
| ! | TTTTATCCTTGGCTTAGCAG+TGG | + | chr5_1:3012375-3012394 | Msa0711180:three_prime_UTR | 40.0% |
| GAAGAGGAGAAAGTGGTTGT+TGG | + | chr5_1:3008128-3008147 | Msa0711180:CDS | 45.0% | |
| ! | CAAGCAAAGGGCATATAAGG+TGG | - | chr5_1:3008483-3008502 | None:intergenic | 45.0% |
| ACATTCCGGATAAGCATGGA+TGG | - | chr5_1:3008578-3008597 | None:intergenic | 45.0% | |
| ! | TGTTTTCTCGCTGTCATCGA+TGG | + | chr5_1:3009041-3009060 | Msa0711180:intron | 45.0% |
| ATTTGTCATTCCCAGTTGCC+AGG | + | chr5_1:3009127-3009146 | Msa0711180:intron | 45.0% | |
| ! | ATCTCACACCACTCTTTTCC+TGG | - | chr5_1:3009148-3009167 | None:intergenic | 45.0% |
| AGAGTGGTGTGAGATTATCG+AGG | + | chr5_1:3009153-3009172 | Msa0711180:CDS | 45.0% | |
| TACAATCAGAAAGTGGGTGG+AGG | - | chr5_1:3009202-3009221 | None:intergenic | 45.0% | |
| ! | GGCTGGATAATCTAGTTTGC+TGG | + | chr5_1:3009296-3009315 | Msa0711180:intron | 45.0% |
| GTTTCTGTTGTGGGACAAAG+AGG | - | chr5_1:3010238-3010257 | None:intergenic | 45.0% | |
| CCCACAACAGAAACTTCAAC+TGG | + | chr5_1:3010244-3010263 | Msa0711180:intron | 45.0% | |
| AAACTTCAACTGGTACGCCA+GGG | + | chr5_1:3010254-3010273 | Msa0711180:intron | 45.0% | |
| CAGCTTTGCCATATTGGATG+GGG | + | chr5_1:3010561-3010580 | Msa0711180:intron | 45.0% | |
| AGGGTCAAGGATGGTTACTT+CGG | - | chr5_1:3010727-3010746 | None:intergenic | 45.0% | |
| ! | AGTGCTGAATTGCATCTGGA+GGG | - | chr5_1:3010746-3010765 | None:intergenic | 45.0% |
| !! | AAGTGCTGAATTGCATCTGG+AGG | - | chr5_1:3010747-3010766 | None:intergenic | 45.0% |
| !! | AGCAAGTGCTGAATTGCATC+TGG | - | chr5_1:3010750-3010769 | None:intergenic | 45.0% |
| CAGCCTTAGTGACTTCATAG+GGG | - | chr5_1:3010982-3011001 | None:intergenic | 45.0% | |
| CCAGCCTTAGTGACTTCATA+GGG | - | chr5_1:3010983-3011002 | None:intergenic | 45.0% | |
| TCCAGCCTTAGTGACTTCAT+AGG | - | chr5_1:3010984-3011003 | None:intergenic | 45.0% | |
| TTTAATCTGTTTGGGGGAGG+TGG | + | chr5_1:3011525-3011544 | Msa0711180:intron | 45.0% | |
| TTAATCTGTTTGGGGGAGGT+GGG | + | chr5_1:3011526-3011545 | Msa0711180:intron | 45.0% | |
| TGTCGGCAAACATGAATTGC+TGG | + | chr5_1:3011632-3011651 | Msa0711180:CDS | 45.0% | |
| GTCGGCAAACATGAATTGCT+GGG | + | chr5_1:3011633-3011652 | Msa0711180:CDS | 45.0% | |
| !! | CATGAATTGCTGGGTGTTGA+TGG | + | chr5_1:3011642-3011661 | Msa0711180:CDS | 45.0% |
| CAAGCTTCACCCGCAATATT+TGG | - | chr5_1:3011729-3011748 | None:intergenic | 45.0% | |
| CTTGCAAGCCTCTCCAATAA+AGG | - | chr5_1:3011874-3011893 | None:intergenic | 45.0% | |
| CTTTATTGGAGAGGCTTGCA+AGG | + | chr5_1:3011872-3011891 | Msa0711180:CDS | 45.0% | |
| ! | CATTTTTCCATACCCTGCAG+AGG | - | chr5_1:3012243-3012262 | None:intergenic | 45.0% |
| AAGAAACCACTGCTAAGCCA+AGG | - | chr5_1:3012384-3012403 | None:intergenic | 45.0% | |
| GTTGGCGAGTGAGTTAGAAA+GGG | - | chr5_1:3012511-3012530 | None:intergenic | 45.0% | |
| AGTTGGCGAGTGAGTTAGAA+AGG | - | chr5_1:3012512-3012531 | None:intergenic | 45.0% | |
| ! | CCACTCTTTTCCTGGCAACT+GGG | - | chr5_1:3009140-3009159 | None:intergenic | 50.0% |
| ! | ACCACTCTTTTCCTGGCAAC+TGG | - | chr5_1:3009141-3009160 | None:intergenic | 50.0% |
| AATCAGAAAGTGGGTGGAGG+TGG | - | chr5_1:3009199-3009218 | None:intergenic | 50.0% | |
| TTGAAACGGTGGTGAATGGC+TGG | + | chr5_1:3009279-3009298 | Msa0711180:intron | 50.0% | |
| !! | AGCAATGCTGCCGATTCCAT+AGG | + | chr5_1:3009526-3009545 | Msa0711180:intron | 50.0% |
| TCGTGAATCGCAGAAAGTGG+TGG | - | chr5_1:3009939-3009958 | None:intergenic | 50.0% | |
| CAGTCGTGAATCGCAGAAAG+TGG | - | chr5_1:3009942-3009961 | None:intergenic | 50.0% | |
| GAACACTGGACAGCTTATGG+AGG | - | chr5_1:3010134-3010153 | None:intergenic | 50.0% | |
| TGTCCAGTGTTCGCCATGAT+GGG | + | chr5_1:3010142-3010161 | Msa0711180:intron | 50.0% | |
| GAAACTTCAACTGGTACGCC+AGG | + | chr5_1:3010253-3010272 | Msa0711180:intron | 50.0% | |
| TTTGCCATATTGGATGGGGC+TGG | + | chr5_1:3010565-3010584 | Msa0711180:intron | 50.0% | |
| ATCACCAGCCCCATCCAATA+TGG | - | chr5_1:3010572-3010591 | None:intergenic | 50.0% | |
| GGGTCAAGGATGGTTACTTC+GGG | - | chr5_1:3010726-3010745 | None:intergenic | 50.0% | |
| GAATTGCATCTGGAGGGTCA+AGG | - | chr5_1:3010740-3010759 | None:intergenic | 50.0% | |
| ! | GGTTGGTGTTCCACAACAGT+TGG | + | chr5_1:3010925-3010944 | Msa0711180:CDS | 50.0% |
| CCCTATGAAGTCACTAAGGC+TGG | + | chr5_1:3010980-3010999 | Msa0711180:CDS | 50.0% | |
| GCTGGACTGAAGTTACCGTT+AGG | + | chr5_1:3010998-3011017 | Msa0711180:CDS | 50.0% | |
| GCACTCCCATCCACAACTAA+TGG | - | chr5_1:3011330-3011349 | None:intergenic | 50.0% | |
| TAATCTGTTTGGGGGAGGTG+GGG | + | chr5_1:3011527-3011546 | Msa0711180:intron | 50.0% | |
| GCTGCTGCACATGAAACTCT+TGG | - | chr5_1:3011681-3011700 | None:intergenic | 50.0% | |
| ! | AGCATACCAGTCTAAGACGG+AGG | - | chr5_1:3011900-3011919 | None:intergenic | 50.0% |
| TGAACAAGTGGAGTCCCTAG+AGG | - | chr5_1:3011992-3012011 | None:intergenic | 50.0% | |
| GATACGGGAACATGGGACAA+AGG | + | chr5_1:3012022-3012041 | Msa0711180:CDS | 50.0% | |
| CTTTAACCCTCTGCAGGGTA+TGG | + | chr5_1:3012233-3012252 | Msa0711180:intron | 50.0% | |
| CCCAGTTGCCAGGAAAAGAG+TGG | + | chr5_1:3009137-3009156 | Msa0711180:intron | 55.0% | |
| AGCTTATGGAGGCAGGACTG+CGG | - | chr5_1:3010123-3010142 | None:intergenic | 55.0% | |
| ACTGGACAGCTTATGGAGGC+AGG | - | chr5_1:3010130-3010149 | None:intergenic | 55.0% | |
| GGCGAACACTGGACAGCTTA+TGG | - | chr5_1:3010137-3010156 | None:intergenic | 55.0% | |
| CTGTCCAGTGTTCGCCATGA+TGG | + | chr5_1:3010141-3010160 | Msa0711180:intron | 55.0% | |
| GTCCAGTGTTCGCCATGATG+GGG | + | chr5_1:3010143-3010162 | Msa0711180:intron | 55.0% | |
| TCCAGTGTTCGCCATGATGG+GGG | + | chr5_1:3010144-3010163 | Msa0711180:intron | 55.0% | |
| TGCATCTGGAGGGTCAAGGA+TGG | - | chr5_1:3010736-3010755 | None:intergenic | 55.0% | |
| AAGGGACCTCCGTCTTAGAC+TGG | + | chr5_1:3011891-3011910 | Msa0711180:CDS | 55.0% | |
| ! | TGGAGTCCCTAGAGGTGTGA+TGG | - | chr5_1:3011984-3012003 | None:intergenic | 55.0% |
| CAGAAAGTGGGTGGAGGTGG+AGG | - | chr5_1:3009196-3009215 | None:intergenic | 60.0% | |
| GCTTATGGAGGCAGGACTGC+GGG | - | chr5_1:3010122-3010141 | None:intergenic | 60.0% | |
| ! | CCAGTGTTCGCCATGATGGG+GGG | + | chr5_1:3010145-3010164 | Msa0711180:intron | 60.0% |
| ! | CAGTGTTCGCCATGATGGGG+GGG | + | chr5_1:3010146-3010165 | Msa0711180:intron | 60.0% |
| ! | AGTGTTCGCCATGATGGGGG+GGG | + | chr5_1:3010147-3010166 | Msa0711180:intron | 60.0% |
| GGAGGTGGGGTTTACACTGC+AGG | + | chr5_1:3011540-3011559 | Msa0711180:intron | 60.0% | |
| GGTGGGGTTTACACTGCAGG+TGG | + | chr5_1:3011543-3011562 | Msa0711180:intron | 60.0% | |
| CCCCCCATCATGGCGAACAC+TGG | - | chr5_1:3010148-3010167 | None:intergenic | 65.0% | |
| ! | GTGTTCGCCATGATGGGGGG+GGG | + | chr5_1:3010148-3010167 | Msa0711180:intron | 65.0% |
| ! | TGTTCGCCATGATGGGGGGG+GGG | + | chr5_1:3010149-3010168 | Msa0711180:intron | 65.0% |
| ! | GTTCGCCATGATGGGGGGGG+GGG | + | chr5_1:3010150-3010169 | Msa0711180:intron | 70.0% |
| ! | TTCGCCATGATGGGGGGGGG+GGG | + | chr5_1:3010151-3010170 | Msa0711180:intron | 70.0% |
| ! | TCGCCATGATGGGGGGGGGG+GGG | + | chr5_1:3010152-3010171 | Msa0711180:intron | 75.0% |
| !! | CGCCATGATGGGGGGGGGGG+GGG | + | chr5_1:3010153-3010172 | Msa0711180:intron | 80.0% |
| !! | GCCATGATGGGGGGGGGGGG+GGG | + | chr5_1:3010154-3010173 | Msa0711180:intron | 80.0% |
| !! | CCATGATGGGGGGGGGGGGG+GGG | + | chr5_1:3010155-3010174 | Msa0711180:intron | 80.0% |
| !! | CATGATGGGGGGGGGGGGGG+GGG | + | chr5_1:3010156-3010175 | Msa0711180:intron | 80.0% |
| !! | ATGATGGGGGGGGGGGGGGG+GGG | + | chr5_1:3010157-3010176 | Msa0711180:intron | 80.0% |
| ! | CCCCCCCCCCCCCCCCATCA+TGG | - | chr5_1:3010158-3010177 | None:intergenic | 85.0% |
| ! | TGATGGGGGGGGGGGGGGGG+GGG | + | chr5_1:3010158-3010177 | Msa0711180:intron | 85.0% |
| ! | GATGGGGGGGGGGGGGGGGG+GGG | + | chr5_1:3010159-3010178 | Msa0711180:intron | 90.0% |
| ! | ATGGGGGGGGGGGGGGGGGG+GGG | + | chr5_1:3010160-3010179 | Msa0711180:intron | 90.0% |
| ! | TGGGGGGGGGGGGGGGGGGG+GGG | + | chr5_1:3010161-3010180 | Msa0711180:intron | 95.0% |
| ! | GGGGGGGGGGGGGGGGGGGT+CGG | + | chr5_1:3010171-3010190 | Msa0711180:intron | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 3007847 | 3012608 | 3007847 | ID=Msa0711180;Name=Msa0711180 |
| chr5_1 | mRNA | 3007847 | 3012608 | 3007847 | ID=Msa0711180-mRNA-1;Parent=Msa0711180;Name=Msa0711180-mRNA-1;_AED=0.15;_eAED=0.16;_QI=248|0.77|0.8|1|1|1|10|268|356 |
| chr5_1 | exon | 3007847 | 3008213 | 3007847 | ID=Msa0711180-mRNA-1:exon:1050;Parent=Msa0711180-mRNA-1 |
| chr5_1 | exon | 3008939 | 3009020 | 3008939 | ID=Msa0711180-mRNA-1:exon:1051;Parent=Msa0711180-mRNA-1 |
| chr5_1 | exon | 3009142 | 3009174 | 3009142 | ID=Msa0711180-mRNA-1:exon:1052;Parent=Msa0711180-mRNA-1 |
| chr5_1 | exon | 3010705 | 3010825 | 3010705 | ID=Msa0711180-mRNA-1:exon:1053;Parent=Msa0711180-mRNA-1 |
| chr5_1 | exon | 3010921 | 3011019 | 3010921 | ID=Msa0711180-mRNA-1:exon:1054;Parent=Msa0711180-mRNA-1 |
| chr5_1 | exon | 3011319 | 3011438 | 3011319 | ID=Msa0711180-mRNA-1:exon:1055;Parent=Msa0711180-mRNA-1 |
| chr5_1 | exon | 3011544 | 3011738 | 3011544 | ID=Msa0711180-mRNA-1:exon:1056;Parent=Msa0711180-mRNA-1 |
| chr5_1 | exon | 3011857 | 3011912 | 3011857 | ID=Msa0711180-mRNA-1:exon:1057;Parent=Msa0711180-mRNA-1 |
| chr5_1 | exon | 3011996 | 3012149 | 3011996 | ID=Msa0711180-mRNA-1:exon:1058;Parent=Msa0711180-mRNA-1 |
| chr5_1 | exon | 3012249 | 3012608 | 3012249 | ID=Msa0711180-mRNA-1:exon:1059;Parent=Msa0711180-mRNA-1 |
| chr5_1 | five_prime_UTR | 3007847 | 3008094 | 3007847 | ID=Msa0711180-mRNA-1:five_prime_utr;Parent=Msa0711180-mRNA-1 |
| chr5_1 | CDS | 3008095 | 3008213 | 3008095 | ID=Msa0711180-mRNA-1:cds;Parent=Msa0711180-mRNA-1 |
| chr5_1 | CDS | 3008939 | 3009020 | 3008939 | ID=Msa0711180-mRNA-1:cds;Parent=Msa0711180-mRNA-1 |
| chr5_1 | CDS | 3009142 | 3009174 | 3009142 | ID=Msa0711180-mRNA-1:cds;Parent=Msa0711180-mRNA-1 |
| chr5_1 | CDS | 3010705 | 3010825 | 3010705 | ID=Msa0711180-mRNA-1:cds;Parent=Msa0711180-mRNA-1 |
| chr5_1 | CDS | 3010921 | 3011019 | 3010921 | ID=Msa0711180-mRNA-1:cds;Parent=Msa0711180-mRNA-1 |
| chr5_1 | CDS | 3011319 | 3011438 | 3011319 | ID=Msa0711180-mRNA-1:cds;Parent=Msa0711180-mRNA-1 |
| chr5_1 | CDS | 3011544 | 3011738 | 3011544 | ID=Msa0711180-mRNA-1:cds;Parent=Msa0711180-mRNA-1 |
| chr5_1 | CDS | 3011857 | 3011912 | 3011857 | ID=Msa0711180-mRNA-1:cds;Parent=Msa0711180-mRNA-1 |
| chr5_1 | CDS | 3011996 | 3012149 | 3011996 | ID=Msa0711180-mRNA-1:cds;Parent=Msa0711180-mRNA-1 |
| chr5_1 | CDS | 3012249 | 3012340 | 3012249 | ID=Msa0711180-mRNA-1:cds;Parent=Msa0711180-mRNA-1 |
| chr5_1 | three_prime_UTR | 3012341 | 3012608 | 3012341 | ID=Msa0711180-mRNA-1:three_prime_utr;Parent=Msa0711180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
