Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1380250 | AES93601.1 | 90.671 | 343 | 6 | 2 | 1 | 343 | 1 | 317 | 0.0 | 616 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1380250 | sp|Q9SUG3|ITPK3_ARATH | 68.060 | 335 | 82 | 2 | 12 | 346 | 38 | 347 | 6.06e-155 | 442 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1380250 | G7K0Z3 | 90.671 | 343 | 6 | 2 | 1 | 343 | 1 | 317 | 0.0 | 616 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0620420 | Msa1380250 | 0.903156 | 4.639078e-79 | -8.615850e-47 |
| Msa0711180 | Msa1380250 | 0.840292 | 9.493609e-58 | -8.615850e-47 |
| Msa0743680 | Msa1380250 | 0.804343 | 2.260780e-49 | -8.615850e-47 |
| Msa0802470 | Msa1380250 | -0.808874 | 2.499683e-50 | -8.615850e-47 |
| Msa0830270 | Msa1380250 | 0.972646 | 4.167071e-135 | -8.615850e-47 |
| Msa0190830 | Msa1380250 | 0.813744 | 2.192073e-51 | -8.615850e-47 |
| Msa0981820 | Msa1380250 | -0.805147 | 1.536104e-49 | -8.615850e-47 |
| Msa0272480 | Msa1380250 | -0.808160 | 3.550748e-50 | -8.615850e-47 |
| Msa0311580 | Msa1380250 | 0.805191 | 1.503812e-49 | -8.615850e-47 |
| Msa0312690 | Msa1380250 | -0.805147 | 1.536104e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1380250 | MtrunA17_Chr5g0393881 | 90.671 | 343 | 6 | 2 | 1 | 343 | 1 | 317 | 0.0 | 613 |
| Msa1380250 | MtrunA17_Chr1g0206731 | 74.251 | 334 | 63 | 1 | 13 | 346 | 29 | 339 | 5.21e-173 | 484 |
| Msa1380250 | MtrunA17_Chr8g0366491 | 39.377 | 353 | 169 | 8 | 11 | 348 | 3 | 325 | 1.49e-79 | 248 |
| Msa1380250 | MtrunA17_Chr4g0059021 | 37.082 | 329 | 177 | 4 | 17 | 340 | 10 | 313 | 5.20e-70 | 221 |
| Msa1380250 | MtrunA17_Chr3g0111511 | 26.349 | 315 | 187 | 11 | 15 | 297 | 161 | 462 | 9.12e-19 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1380250 | AT4G08170.2 | 68.060 | 335 | 82 | 2 | 12 | 346 | 38 | 347 | 6.16e-156 | 442 |
| Msa1380250 | AT4G33770.1 | 62.462 | 333 | 100 | 2 | 14 | 346 | 80 | 387 | 1.31e-138 | 399 |
| Msa1380250 | AT4G33770.2 | 60.377 | 318 | 97 | 3 | 29 | 346 | 6 | 294 | 1.31e-126 | 365 |
| Msa1380250 | AT4G08170.1 | 67.986 | 278 | 64 | 2 | 69 | 346 | 7 | 259 | 1.90e-125 | 361 |
| Msa1380250 | AT4G08170.3 | 67.901 | 243 | 53 | 2 | 104 | 346 | 1 | 218 | 4.55e-105 | 308 |
| Msa1380250 | AT4G08170.6 | 67.901 | 243 | 53 | 2 | 104 | 346 | 1 | 218 | 4.55e-105 | 308 |
| Msa1380250 | AT4G08170.5 | 67.901 | 243 | 53 | 2 | 104 | 346 | 1 | 218 | 4.55e-105 | 308 |
| Msa1380250 | AT4G08170.7 | 67.901 | 243 | 53 | 2 | 104 | 346 | 1 | 218 | 4.55e-105 | 308 |
| Msa1380250 | AT4G08170.4 | 67.901 | 243 | 53 | 2 | 104 | 346 | 1 | 218 | 4.55e-105 | 308 |
| Msa1380250 | AT4G33770.3 | 58.025 | 243 | 77 | 2 | 104 | 346 | 1 | 218 | 3.69e-86 | 259 |
| Msa1380250 | AT5G16760.1 | 37.574 | 338 | 177 | 5 | 12 | 342 | 6 | 316 | 9.39e-73 | 229 |
| Msa1380250 | AT2G43980.1 | 27.119 | 236 | 137 | 7 | 73 | 297 | 248 | 459 | 2.31e-14 | 74.3 |
Find 95 sgRNAs with CRISPR-Local
Find 280 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTTGAAAATGTGTTAAA+TGG | 0.120172 | tig0020341:+68862 | Msa1380250:three_prime_UTR |
| ACATCCACCAAAACCTTTAT+TGG | 0.171794 | tig0020341:+68258 | Msa1380250:CDS |
| CAAGCTTCACCCGCAATATT+TGG | 0.185898 | tig0020341:-68126 | None:intergenic |
| TCCAAGTTGTTTCAGTTTAT+AGG | 0.238870 | tig0020341:-64421 | None:intergenic |
| TCATGTGTACTGTAGGAATA+AGG | 0.297738 | tig0020341:+65324 | Msa1380250:intron |
| ATTTATAATATACTATAGTT+TGG | 0.301720 | tig0020341:-64393 | None:intergenic |
| GTTTATGTTTGAAGGATTAC+AGG | 0.302017 | tig0020341:+67091 | Msa1380250:intron |
| ATTGATATCAATTACTTTCC+AGG | 0.307544 | tig0020341:+68459 | Msa1380250:CDS |
| TATTGTTGGCGAAACTATAA+AGG | 0.308980 | tig0020341:+67984 | Msa1380250:CDS |
| TTCTGCAGATGAAGCTGATT+TGG | 0.315924 | tig0020341:+68101 | Msa1380250:CDS |
| CTTGCAAGGGCAATAAAGTT+TGG | 0.318995 | tig0020341:-64598 | None:intergenic |
| AGCCTCTCCAATAAAGGTTT+TGG | 0.327994 | tig0020341:-68265 | None:intergenic |
| CTTCAAGAGTTTGTCAATCA+TGG | 0.331239 | tig0020341:+67817 | Msa1380250:CDS |
| CTCTTTAAGATTTATATTGT+TGG | 0.331829 | tig0020341:+67970 | Msa1380250:CDS |
| CATGAATTGCTGGGTGTTGA+TGG | 0.353479 | tig0020341:+68042 | Msa1380250:CDS |
| AATCAGTAACATGTTAATTC+CGG | 0.360602 | tig0020341:+68807 | Msa1380250:three_prime_UTR |
| CTTGCAAGCCTCTCCAATAA+AGG | 0.363119 | tig0020341:-68271 | None:intergenic |
| TTTCTTCTTCTTTGATGTTA+AGG | 0.374426 | tig0020341:-64563 | None:intergenic |
| GCACTCCCATCCACAACTAA+TGG | 0.388274 | tig0020341:-67727 | None:intergenic |
| GTTTGATGTTGTCTTGCATA+AGG | 0.402731 | tig0020341:+65399 | Msa1380250:CDS |
| TCCAGCCTTAGTGACTTCAT+AGG | 0.405099 | tig0020341:-67381 | None:intergenic |
| TAATATACTATAGTTTGGTT+TGG | 0.405324 | tig0020341:-64388 | None:intergenic |
| CACATGAAACTCTTGGAAAT+CGG | 0.406306 | tig0020341:-68071 | None:intergenic |
| AATACACAAAATAGAATCTC+TGG | 0.413683 | tig0020341:+64449 | Msa1380250:five_prime_UTR |
| CATGTGTACTGTAGGAATAA+GGG | 0.417116 | tig0020341:+65325 | Msa1380250:intron |
| GAAGAGGAGAAAGTGGTTGT+TGG | 0.424695 | tig0020341:+64535 | Msa1380250:CDS |
| AATTCATGTTTGCCGACATT+AGG | 0.424932 | tig0020341:-68027 | None:intergenic |
| TGACATAAGTTGTACTTGCC+TGG | 0.426212 | tig0020341:-68477 | None:intergenic |
| CTCTTGAAAATGTGTTAAAT+GGG | 0.428516 | tig0020341:+68863 | Msa1380250:three_prime_UTR |
| AGAAGAAGAAGAGGAGAAAG+TGG | 0.430959 | tig0020341:+64528 | Msa1380250:CDS |
| CCCTATGAAGTCACTAAGGC+TGG | 0.436744 | tig0020341:+67380 | Msa1380250:CDS |
| TATTCTTCACAAGGCTAAGT+AGG | 0.437233 | tig0020341:-68692 | None:intergenic |
| TGTTCAACATTGATATGATA+CGG | 0.438246 | tig0020341:+68406 | Msa1380250:CDS |
| TGTCGGCAAACATGAATTGC+TGG | 0.445133 | tig0020341:+68032 | Msa1380250:CDS |
| GATTTGGATCCAAATATTGC+GGG | 0.452610 | tig0020341:+68117 | Msa1380250:CDS |
| CCAGCCTTAGTGACTTCATA+GGG | 0.458632 | tig0020341:-67380 | None:intergenic |
| AGTTGGCGAGTGAGTTAGAA+AGG | 0.461691 | tig0020341:-68909 | None:intergenic |
| AGCAAGTGCTGAATTGCATC+TGG | 0.465232 | tig0020341:-67147 | None:intergenic |
| ATTTGTCATTCCCAGTTGCC+AGG | 0.467034 | tig0020341:+65527 | Msa1380250:intron |
| GCTGCTGCACATGAAACTCT+TGG | 0.473192 | tig0020341:-68078 | None:intergenic |
| GGGTCAAGGATGGTTACTTC+GGG | 0.473925 | tig0020341:-67123 | None:intergenic |
| ATAAATATGTGTTCATACTC+TGG | 0.483448 | tig0020341:-68663 | None:intergenic |
| GCAAAACCATTAGTTGTGGA+TGG | 0.496864 | tig0020341:+67721 | Msa1380250:CDS |
| GAAGAATAAGTGTAAGAAGA+AGG | 0.501173 | tig0020341:+68707 | Msa1380250:CDS |
| TCCTATAAACTGAAACAACT+TGG | 0.501471 | tig0020341:+64420 | Msa1380250:five_prime_UTR |
| AGGGTCAAGGATGGTTACTT+CGG | 0.504894 | tig0020341:-67124 | None:intergenic |
| GCCAAGGATAAAATGCTGAA+TGG | 0.505219 | tig0020341:-68765 | None:intergenic |
| AAGGGACCTCCGTCGTAGAC+TGG | 0.506046 | tig0020341:+68291 | Msa1380250:CDS |
| AATAAGTGTAAGAAGAAGGA+TGG | 0.508168 | tig0020341:+68711 | Msa1380250:CDS |
| GTTCAACATTGATATGATAC+GGG | 0.516800 | tig0020341:+68407 | Msa1380250:CDS |
| CTTTATTGGAGAGGCTTGCA+AGG | 0.518978 | tig0020341:+68272 | Msa1380250:CDS |
| GAATGAATGAATACCTTGCA+AGG | 0.528628 | tig0020341:-64612 | None:intergenic |
| ATGTGTTAAATGGGTTCTCA+AGG | 0.529853 | tig0020341:+68872 | Msa1380250:three_prime_UTR |
| CACCAAAACCTTTATTGGAG+AGG | 0.533281 | tig0020341:+68263 | Msa1380250:CDS |
| AGTTGCAAAACCATTAGTTG+TGG | 0.542877 | tig0020341:+67717 | Msa1380250:intron |
| GGTTGGTGTTCCACAACAGT+TGG | 0.544219 | tig0020341:+67325 | Msa1380250:CDS |
| CAAACTTTATTGCCCTTGCA+AGG | 0.546012 | tig0020341:+64599 | Msa1380250:CDS |
| GCTGGAATGAAGTTACCGTT+AGG | 0.547992 | tig0020341:+67398 | Msa1380250:CDS |
| TATAAACTGAAACAACTTGG+AGG | 0.553180 | tig0020341:+64423 | Msa1380250:five_prime_UTR |
| CAAAACCATTAGTTGTGGAT+GGG | 0.553222 | tig0020341:+67722 | Msa1380250:CDS |
| TCATATCAATGTTGAACAAG+TGG | 0.556715 | tig0020341:-68401 | None:intergenic |
| TAACTTACAAGTTGCAACAA+AGG | 0.557019 | tig0020341:-68942 | None:intergenic |
| TTATGCAAGACAACATCAAA+CGG | 0.561000 | tig0020341:-65397 | None:intergenic |
| TATCCCCTATGAAGTCACTA+AGG | 0.566391 | tig0020341:+67376 | Msa1380250:CDS |
| ATTGATATGATACGGGAACA+TGG | 0.571666 | tig0020341:+68414 | Msa1380250:CDS |
| TGATTTGGATCCAAATATTG+CGG | 0.580725 | tig0020341:+68116 | Msa1380250:CDS |
| AACTCTTGAAGAACAAGTGG+TGG | 0.581060 | tig0020341:-67805 | None:intergenic |
| ATGTGTACTGTAGGAATAAG+GGG | 0.584925 | tig0020341:+65326 | Msa1380250:intron |
| GTTGGCGAGTGAGTTAGAAA+GGG | 0.588719 | tig0020341:-68908 | None:intergenic |
| AACGGACCTTGTTCTAACAT+CGG | 0.598617 | tig0020341:-65379 | None:intergenic |
| GGTAAGAAAATGAAGTTGAA+CGG | 0.598618 | tig0020341:+64496 | Msa1380250:exon |
| TTGATATGATACGGGAACAT+GGG | 0.599312 | tig0020341:+68415 | Msa1380250:CDS |
| ACAAACTCTTGAAGAACAAG+TGG | 0.601930 | tig0020341:-67808 | None:intergenic |
| TTTATTGGAGAGGCTTGCAA+GGG | 0.603132 | tig0020341:+68273 | Msa1380250:CDS |
| CGTTTCTCTCTACCTAATGT+CGG | 0.605707 | tig0020341:+68015 | Msa1380250:CDS |
| TGCATCTGGAGGGTCAAGGA+TGG | 0.607944 | tig0020341:-67133 | None:intergenic |
| TCTTACACTTATTCTTCACA+AGG | 0.608848 | tig0020341:-68701 | None:intergenic |
| AAGAAACCACTGCTAAGCCA+AGG | 0.617574 | tig0020341:-68781 | None:intergenic |
| AAGTGCTGAATTGCATCTGG+AGG | 0.621643 | tig0020341:-67144 | None:intergenic |
| AATGAATGAATACCTTGCAA+GGG | 0.624486 | tig0020341:-64611 | None:intergenic |
| GATACGGGAACATGGGACAA+AGG | 0.626816 | tig0020341:+68422 | Msa1380250:CDS |
| ACAATCGATGCTACAAAATG+TGG | 0.627393 | tig0020341:+67176 | Msa1380250:CDS |
| TTTGAATTAGGGTTTGTGAG+AGG | 0.631319 | tig0020341:+64475 | Msa1380250:five_prime_UTR |
| CCCAGTTGCCAGGAAAAGAG+TGG | 0.634726 | tig0020341:+65537 | Msa1380250:intron |
| CTAAACTTATCTGACTGCCA+TGG | 0.643124 | tig0020341:+67204 | Msa1380250:CDS |
| GTCGGCAAACATGAATTGCT+GGG | 0.643901 | tig0020341:+68033 | Msa1380250:CDS |
| AGTGCTGAATTGCATCTGGA+GGG | 0.651268 | tig0020341:-67143 | None:intergenic |
| AGCATACCAGTCTACGACGG+AGG | 0.652405 | tig0020341:-68297 | None:intergenic |
| TTAGTGATAACCAACTGTTG+TGG | 0.664885 | tig0020341:-67335 | None:intergenic |
| GCGAAACTATAAAGGTTGTG+AGG | 0.674225 | tig0020341:+67992 | Msa1380250:CDS |
| AGAGTGGTGTGAGATTATCG+AGG | 0.676364 | tig0020341:+65553 | Msa1380250:CDS |
| AACAAGCCGATGTTAGAACA+AGG | 0.679946 | tig0020341:+65373 | Msa1380250:CDS |
| CAGCCTTAGTGACTTCATAG+GGG | 0.686617 | tig0020341:-67379 | None:intergenic |
| GAATTGCATCTGGAGGGTCA+AGG | 0.694453 | tig0020341:-67137 | None:intergenic |
| GTAAGCATACCAGTCTACGA+CGG | 0.728858 | tig0020341:-68300 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATAATATACTATAGTT+TGG | - | tig0020341:64396-64415 | None:intergenic | 10.0% |
| !! | TATTATTATTGATAGATTAA+GGG | - | tig0020341:64683-64702 | None:intergenic | 10.0% |
| !!! | TTATCAACTTTTTAATTTTT+AGG | + | tig0020341:67299-67318 | Msa1380250:intron | 10.0% |
| !!! | TATCAACTTTTTAATTTTTA+GGG | + | tig0020341:67300-67319 | Msa1380250:intron | 10.0% |
| !! | AAAATAAAATAAATACCTAA+CGG | - | tig0020341:67416-67435 | None:intergenic | 10.0% |
| !! | CTATTATTATTGATAGATTA+AGG | - | tig0020341:64684-64703 | None:intergenic | 15.0% |
| !!! | GAACAAATTATTTTTTAGTT+TGG | + | tig0020341:65177-65196 | Msa1380250:intron | 15.0% |
| !!! | AGAATTAGCTTTTTATTTTA+TGG | + | tig0020341:65743-65762 | Msa1380250:intron | 15.0% |
| !! | TTAATCTAAATAACATCAAT+AGG | + | tig0020341:65856-65875 | Msa1380250:intron | 15.0% |
| !!! | CCATAATATTTTAGTAAATA+TGG | - | tig0020341:66484-66503 | None:intergenic | 15.0% |
| !! | CCATATTTACTAAAATATTA+TGG | + | tig0020341:66481-66500 | Msa1380250:intron | 15.0% |
| !! | CTATATCTGAAAATTAAATT+GGG | - | tig0020341:67635-67654 | None:intergenic | 15.0% |
| !! | ACTATATCTGAAAATTAAAT+TGG | - | tig0020341:67636-67655 | None:intergenic | 15.0% |
| !!! | TTTTGTTTTTTAATCTGTTT+GGG | + | tig0020341:67917-67936 | Msa1380250:intron | 15.0% |
| !! | TAATATACTATAGTTTGGTT+TGG | - | tig0020341:64391-64410 | None:intergenic | 20.0% |
| !! | GATATGATATATTAGAAAGA+AGG | - | tig0020341:64754-64773 | None:intergenic | 20.0% |
| !!! | TGTTTTTACAGAAAGTAAAA+AGG | - | tig0020341:65060-65079 | None:intergenic | 20.0% |
| !! | AATTGAAAACAATTGTAATG+AGG | - | tig0020341:65098-65117 | None:intergenic | 20.0% |
| !!! | CATTACAATTGTTTTCAATT+TGG | + | tig0020341:65098-65117 | Msa1380250:intron | 20.0% |
| !!! | TGGAAAAGTTATAATTCTTT+TGG | + | tig0020341:66501-66520 | Msa1380250:intron | 20.0% |
| !! | CTGATTTCATTATATCTATT+AGG | - | tig0020341:66775-66794 | None:intergenic | 20.0% |
| !!! | TAATGTTGGTAAATTGAATT+AGG | - | tig0020341:67247-67266 | None:intergenic | 20.0% |
| !! | TAATTCAATTTACCAACATT+AGG | + | tig0020341:67246-67265 | Msa1380250:intron | 20.0% |
| !!! | AAGTTGATAAATAACACAAA+TGG | - | tig0020341:67289-67308 | None:intergenic | 20.0% |
| !!! | AACTTTTTAATTTTTAGGGA+AGG | + | tig0020341:67304-67323 | Msa1380250:intron | 20.0% |
| !! | TTATCTGACAAATATATAAC+AGG | - | tig0020341:67547-67566 | None:intergenic | 20.0% |
| !! | AGAAGAATACAAAAAGATTA+AGG | - | tig0020341:67891-67910 | None:intergenic | 20.0% |
| !!! | CTTTTGTTTTTTAATCTGTT+TGG | + | tig0020341:67916-67935 | Msa1380250:intron | 20.0% |
| !!! | TTTGTTTTTTAATCTGTTTG+GGG | + | tig0020341:67918-67937 | Msa1380250:intron | 20.0% |
| !!! | CTCTTTAAGATTTATATTGT+TGG | + | tig0020341:67970-67989 | Msa1380250:CDS | 20.0% |
| !!! | ACCAATTTTTTTTTTCTTTC+CGG | - | tig0020341:68829-68848 | None:intergenic | 20.0% |
| !!! | TTATATATTTTCGACATTAG+TGG | + | tig0020341:68962-68981 | Msa1380250:three_prime_UTR | 20.0% |
| ! | AATACACAAAATAGAATCTC+TGG | + | tig0020341:64449-64468 | Msa1380250:five_prime_UTR | 25.0% |
| !! | AATCTCTGGATTTTTGAATT+AGG | + | tig0020341:64463-64482 | Msa1380250:five_prime_UTR | 25.0% |
| !! | ATCTCTGGATTTTTGAATTA+GGG | + | tig0020341:64464-64483 | Msa1380250:five_prime_UTR | 25.0% |
| ! | TTTCTTCTTCTTTGATGTTA+AGG | - | tig0020341:64566-64585 | None:intergenic | 25.0% |
| ! | AAGAATGTAAATTGACATTC+CGG | - | tig0020341:64992-65011 | None:intergenic | 25.0% |
| !! | TTTAATCCCTATATTTTGCA+AGG | - | tig0020341:65125-65144 | None:intergenic | 25.0% |
| !!! | TTTTTTATGCATCAAATCAG+TGG | + | tig0020341:65649-65668 | Msa1380250:intron | 25.0% |
| !!! | TTTTATTTTATGGCGTAACT+TGG | + | tig0020341:65753-65772 | Msa1380250:intron | 25.0% |
| ! | TTAATCATGCTTCTATTACT+TGG | + | tig0020341:66143-66162 | Msa1380250:intron | 25.0% |
| !! | TATTAGAGAGTTCTGATAAA+TGG | + | tig0020341:66810-66829 | Msa1380250:intron | 25.0% |
| !! | TGAAATATGTGAGAAGTTTT+TGG | + | tig0020341:66841-66860 | Msa1380250:intron | 25.0% |
| !! | TAGTCTATGAATTTTGTAAC+TGG | + | tig0020341:67000-67019 | Msa1380250:intron | 25.0% |
| ! | ATGTAGTAAATAAGTTACCA+TGG | - | tig0020341:67224-67243 | None:intergenic | 25.0% |
| ! | AGTAATGAAAAACCTAATGT+TGG | - | tig0020341:67261-67280 | None:intergenic | 25.0% |
| !!! | TTTTAATTTTTAGGGAAGGT+TGG | + | tig0020341:67308-67327 | Msa1380250:intron | 25.0% |
| ! | AGAAGAACACAAAAAGATTA+AGG | - | tig0020341:67863-67882 | None:intergenic | 25.0% |
| !!! | TTGTTTTTTAATCTGTTTGG+GGG | + | tig0020341:67919-67938 | Msa1380250:intron | 25.0% |
| ! | TGTTCAACATTGATATGATA+CGG | + | tig0020341:68406-68425 | Msa1380250:CDS | 25.0% |
| ! | ATTGATATCAATTACTTTCC+AGG | + | tig0020341:68459-68478 | Msa1380250:CDS | 25.0% |
| ! | ATAAATATGTGTTCATACTC+TGG | - | tig0020341:68666-68685 | None:intergenic | 25.0% |
| ! | AATCAGTAACATGTTAATTC+CGG | + | tig0020341:68807-68826 | Msa1380250:three_prime_UTR | 25.0% |
| ! | TCCGGAAAGAAAAAAAAAAT+TGG | + | tig0020341:68825-68844 | Msa1380250:three_prime_UTR | 25.0% |
| ! | CTCTTGAAAATGTGTTAAAT+GGG | + | tig0020341:68863-68882 | Msa1380250:three_prime_UTR | 25.0% |
| TCCTATAAACTGAAACAACT+TGG | + | tig0020341:64420-64439 | Msa1380250:five_prime_UTR | 30.0% | |
| ! | TCCAAGTTGTTTCAGTTTAT+AGG | - | tig0020341:64424-64443 | None:intergenic | 30.0% |
| TATAAACTGAAACAACTTGG+AGG | + | tig0020341:64423-64442 | Msa1380250:five_prime_UTR | 30.0% | |
| GGTAAGAAAATGAAGTTGAA+CGG | + | tig0020341:64496-64515 | Msa1380250:exon | 30.0% | |
| AATGAATGAATACCTTGCAA+GGG | - | tig0020341:64614-64633 | None:intergenic | 30.0% | |
| ACCTTGAATTATCAAGCAAA+GGG | - | tig0020341:64895-64914 | None:intergenic | 30.0% | |
| AAAGGAAAGAGGAAAATGTA+TGG | - | tig0020341:65017-65036 | None:intergenic | 30.0% | |
| ! | ACATTTTCCTCTTTCCTTTT+TGG | + | tig0020341:65018-65037 | Msa1380250:intron | 30.0% |
| AAAACATCCAAAAAGGAAAG+AGG | - | tig0020341:65028-65047 | None:intergenic | 30.0% | |
| ! | TTTCCTTTTTGGATGTTTTC+TGG | + | tig0020341:65029-65048 | Msa1380250:intron | 30.0% |
| AATCCAGAAAACATCCAAAA+AGG | - | tig0020341:65035-65054 | None:intergenic | 30.0% | |
| ATTTGGTCCTTGCAAAATAT+AGG | + | tig0020341:65115-65134 | Msa1380250:intron | 30.0% | |
| TTTGGTCCTTGCAAAATATA+GGG | + | tig0020341:65116-65135 | Msa1380250:intron | 30.0% | |
| !! | CTCTGTTGATGAACTATTTT+AGG | + | tig0020341:65274-65293 | Msa1380250:intron | 30.0% |
| ! | CACTTAAGAATCAGTATTGA+AGG | - | tig0020341:65301-65320 | None:intergenic | 30.0% |
| TTATGCAAGACAACATCAAA+CGG | - | tig0020341:65400-65419 | None:intergenic | 30.0% | |
| TTCTAGTACAATCAGAAAGT+GGG | - | tig0020341:65608-65627 | None:intergenic | 30.0% | |
| ! | TTTCTAGTACAATCAGAAAG+TGG | - | tig0020341:65609-65628 | None:intergenic | 30.0% |
| TCAAACTTAATTCACAGCAT+TGG | - | tig0020341:65681-65700 | None:intergenic | 30.0% | |
| GCTGTGAATTAAGTTTGAAA+CGG | + | tig0020341:65683-65702 | Msa1380250:intron | 30.0% | |
| GATTAATAATCCTCAGTTGT+TGG | - | tig0020341:65842-65861 | None:intergenic | 30.0% | |
| TAAATAACATCAATAGGCTG+TGG | + | tig0020341:65862-65881 | Msa1380250:intron | 30.0% | |
| AGTCTTCTCTAATAAGTCTA+AGG | - | tig0020341:65919-65938 | None:intergenic | 30.0% | |
| GAAATATCAACCTATGGAAT+CGG | - | tig0020341:65957-65976 | None:intergenic | 30.0% | |
| AGCATAAAGGAAAGAAAATC+AGG | + | tig0020341:66033-66052 | Msa1380250:intron | 30.0% | |
| !!! | AACACTGCGTCATATTTTTT+TGG | - | tig0020341:66211-66230 | None:intergenic | 30.0% |
| GACAACTGTAATATTGACAA+TGG | + | tig0020341:66396-66415 | Msa1380250:intron | 30.0% | |
| AATATTGACAATGGCAAACT+TGG | + | tig0020341:66405-66424 | Msa1380250:intron | 30.0% | |
| TGTTCTCAATATTGAGACAA+TGG | - | tig0020341:66432-66451 | None:intergenic | 30.0% | |
| TATAATGAAATCAGCCTGAA+AGG | + | tig0020341:66781-66800 | Msa1380250:intron | 30.0% | |
| CTCTAATATTTGTTCCTTTC+AGG | - | tig0020341:66798-66817 | None:intergenic | 30.0% | |
| !!! | TTATTTTTTTGCCTCGTGAA+AGG | - | tig0020341:66911-66930 | None:intergenic | 30.0% |
| ! | TAGTCTGTGAATTTTGCATT+TGG | + | tig0020341:67035-67054 | Msa1380250:intron | 30.0% |
| ! | TGTGAATTTTGCATTTGGAT+GGG | + | tig0020341:67040-67059 | Msa1380250:intron | 30.0% |
| AAGTTTGTAGGTAAAATTGC+TGG | - | tig0020341:67067-67086 | None:intergenic | 30.0% | |
| ACATAAACAGACAAGTTTGT+AGG | - | tig0020341:67079-67098 | None:intergenic | 30.0% | |
| ACTTGTCTGTTTATGTTTGA+AGG | + | tig0020341:67083-67102 | Msa1380250:intron | 30.0% | |
| GTTTATGTTTGAAGGATTAC+AGG | + | tig0020341:67091-67110 | Msa1380250:intron | 30.0% | |
| TAGAGGAATAGATCTGATAT+CGG | + | tig0020341:67462-67481 | Msa1380250:intron | 30.0% | |
| AAATGCACTCAGATGATATA+TGG | - | tig0020341:67504-67523 | None:intergenic | 30.0% | |
| ! | GCTATAATCGTCAATTTTCA+TGG | + | tig0020341:67596-67615 | Msa1380250:intron | 30.0% |
| TATTGTTGGCGAAACTATAA+AGG | + | tig0020341:67984-68003 | Msa1380250:CDS | 30.0% | |
| ! | TGATTTGGATCCAAATATTG+CGG | + | tig0020341:68116-68135 | Msa1380250:CDS | 30.0% |
| !! | AAGTAGTCTTCATTTTTGTC+TGG | - | tig0020341:68182-68201 | None:intergenic | 30.0% |
| ! | ATAATGTCTGTCTTGATTTG+AGG | - | tig0020341:68344-68363 | None:intergenic | 30.0% |
| TCATATCAATGTTGAACAAG+TGG | - | tig0020341:68404-68423 | None:intergenic | 30.0% | |
| GTTCAACATTGATATGATAC+GGG | + | tig0020341:68407-68426 | Msa1380250:CDS | 30.0% | |
| ATAAAGCTGTTCAACCAATT+TGG | - | tig0020341:68613-68632 | None:intergenic | 30.0% | |
| TCTTACACTTATTCTTCACA+AGG | - | tig0020341:68704-68723 | None:intergenic | 30.0% | |
| GAAGAATAAGTGTAAGAAGA+AGG | + | tig0020341:68707-68726 | Msa1380250:CDS | 30.0% | |
| AATAAGTGTAAGAAGAAGGA+TGG | + | tig0020341:68711-68730 | Msa1380250:CDS | 30.0% | |
| !! | CCATTTAACACATTTTCAAG+AGG | - | tig0020341:68865-68884 | None:intergenic | 30.0% |
| CCTCTTGAAAATGTGTTAAA+TGG | + | tig0020341:68862-68881 | Msa1380250:three_prime_UTR | 30.0% | |
| TAACTTACAAGTTGCAACAA+AGG | - | tig0020341:68945-68964 | None:intergenic | 30.0% | |
| TTTGAATTAGGGTTTGTGAG+AGG | + | tig0020341:64475-64494 | Msa1380250:five_prime_UTR | 35.0% | |
| TGAAGAAGAAGAAGAAGAAG+AGG | + | tig0020341:64519-64538 | Msa1380250:CDS | 35.0% | |
| GAATGAATGAATACCTTGCA+AGG | - | tig0020341:64615-64634 | None:intergenic | 35.0% | |
| GCATATAAGGTGGAATATTC+TGG | - | tig0020341:64873-64892 | None:intergenic | 35.0% | |
| ! | TATCAAGCAAAGGGCATATA+AGG | - | tig0020341:64886-64905 | None:intergenic | 35.0% |
| GACCTTGAATTATCAAGCAA+AGG | - | tig0020341:64896-64915 | None:intergenic | 35.0% | |
| TTAATCCATCCATGCTTATC+CGG | + | tig0020341:64970-64989 | Msa1380250:intron | 35.0% | |
| TCATGTGTACTGTAGGAATA+AGG | + | tig0020341:65324-65343 | Msa1380250:intron | 35.0% | |
| CATGTGTACTGTAGGAATAA+GGG | + | tig0020341:65325-65344 | Msa1380250:intron | 35.0% | |
| ATGTGTACTGTAGGAATAAG+GGG | + | tig0020341:65326-65345 | Msa1380250:intron | 35.0% | |
| GTTTGATGTTGTCTTGCATA+AGG | + | tig0020341:65399-65418 | Msa1380250:CDS | 35.0% | |
| ! | GTGAATTAAGTTTGAAACGG+TGG | + | tig0020341:65686-65705 | Msa1380250:intron | 35.0% |
| TTCAAGTATTCCAACAACTG+AGG | + | tig0020341:65829-65848 | Msa1380250:intron | 35.0% | |
| TTCAGGGAAATATCAACCTA+TGG | - | tig0020341:65963-65982 | None:intergenic | 35.0% | |
| ! | GGTTGATATTTCCCTGAATT+AGG | + | tig0020341:65965-65984 | Msa1380250:intron | 35.0% |
| AGTCAGATAGTCCTAATTCA+GGG | - | tig0020341:65979-65998 | None:intergenic | 35.0% | |
| AAGTCAGATAGTCCTAATTC+AGG | - | tig0020341:65980-65999 | None:intergenic | 35.0% | |
| TGAATTAGGACTATCTGACT+TGG | + | tig0020341:65979-65998 | Msa1380250:intron | 35.0% | |
| GAAGTATAAGCACAGCATAA+AGG | + | tig0020341:66020-66039 | Msa1380250:intron | 35.0% | |
| !! | GACGCAGTGTTTTTAAATAG+CGG | + | tig0020341:66220-66239 | Msa1380250:intron | 35.0% |
| TGCTTACATAGATCTACGAT+GGG | - | tig0020341:66598-66617 | None:intergenic | 35.0% | |
| AGGGCTGTTCAAATATAGAA+CGG | + | tig0020341:66673-66692 | Msa1380250:intron | 35.0% | |
| ACCAAGTTTCTTGAAGTACA+TGG | + | tig0020341:66706-66725 | Msa1380250:intron | 35.0% | |
| ! | GTCATATTTTTCCTTTCACG+AGG | + | tig0020341:66897-66916 | Msa1380250:intron | 35.0% |
| AGATTACAGCTTTGCCATAT+TGG | + | tig0020341:66955-66974 | Msa1380250:intron | 35.0% | |
| ! | CTGTGAATTTTGCATTTGGA+TGG | + | tig0020341:67039-67058 | Msa1380250:intron | 35.0% |
| ! | GTGAATTTTGCATTTGGATG+GGG | + | tig0020341:67041-67060 | Msa1380250:intron | 35.0% |
| ACAATCGATGCTACAAAATG+TGG | + | tig0020341:67176-67195 | Msa1380250:CDS | 35.0% | |
| TTAGTGATAACCAACTGTTG+TGG | - | tig0020341:67338-67357 | None:intergenic | 35.0% | |
| TCTAGTGAAAGTAAGGATCT+CGG | - | tig0020341:67446-67465 | None:intergenic | 35.0% | |
| CTATTCCTCTAGTGAAAGTA+AGG | - | tig0020341:67453-67472 | None:intergenic | 35.0% | |
| ATATAGTAGCATCTCTCTTG+TGG | + | tig0020341:67649-67668 | Msa1380250:intron | 35.0% | |
| AGTTGCAAAACCATTAGTTG+TGG | + | tig0020341:67717-67736 | Msa1380250:intron | 35.0% | |
| CAAAACCATTAGTTGTGGAT+GGG | + | tig0020341:67722-67741 | Msa1380250:CDS | 35.0% | |
| ACAAACTCTTGAAGAACAAG+TGG | - | tig0020341:67811-67830 | None:intergenic | 35.0% | |
| CTTCAAGAGTTTGTCAATCA+TGG | + | tig0020341:67817-67836 | Msa1380250:CDS | 35.0% | |
| !!! | TTTTTTAATCTGTTTGGGGG+AGG | + | tig0020341:67922-67941 | Msa1380250:intron | 35.0% |
| AATTCATGTTTGCCGACATT+AGG | - | tig0020341:68030-68049 | None:intergenic | 35.0% | |
| CACATGAAACTCTTGGAAAT+CGG | - | tig0020341:68074-68093 | None:intergenic | 35.0% | |
| GATTTGGATCCAAATATTGC+GGG | + | tig0020341:68117-68136 | Msa1380250:CDS | 35.0% | |
| ACATCCACCAAAACCTTTAT+TGG | + | tig0020341:68258-68277 | Msa1380250:CDS | 35.0% | |
| TTATATTCCATCACACCTCT+AGG | + | tig0020341:68374-68393 | Msa1380250:intron | 35.0% | |
| TATATTCCATCACACCTCTA+GGG | + | tig0020341:68375-68394 | Msa1380250:intron | 35.0% | |
| ATTGATATGATACGGGAACA+TGG | + | tig0020341:68414-68433 | Msa1380250:CDS | 35.0% | |
| TTGATATGATACGGGAACAT+GGG | + | tig0020341:68415-68434 | Msa1380250:CDS | 35.0% | |
| ACATACGCAATGCTCATAAA+TGG | - | tig0020341:68574-68593 | None:intergenic | 35.0% | |
| TTTATCTTTAACCCTCTGCA+GGG | + | tig0020341:68628-68647 | Msa1380250:intron | 35.0% | |
| TATTCTTCACAAGGCTAAGT+AGG | - | tig0020341:68695-68714 | None:intergenic | 35.0% | |
| ! | TCCATTCAGCATTTTATCCT+TGG | + | tig0020341:68764-68783 | Msa1380250:three_prime_UTR | 35.0% |
| ! | ATGTGTTAAATGGGTTCTCA+AGG | + | tig0020341:68872-68891 | Msa1380250:three_prime_UTR | 35.0% |
| !!! | ACAAAGGCATTTTGATCAGT+TGG | - | tig0020341:68929-68948 | None:intergenic | 35.0% |
| AGAAGAAGAAGAGGAGAAAG+TGG | + | tig0020341:64528-64547 | Msa1380250:CDS | 40.0% | |
| CTTGCAAGGGCAATAAAGTT+TGG | - | tig0020341:64601-64620 | None:intergenic | 40.0% | |
| CAAACTTTATTGCCCTTGCA+AGG | + | tig0020341:64599-64618 | Msa1380250:CDS | 40.0% | |
| ! | GCCCTTTGCTTGATAATTCA+AGG | + | tig0020341:64891-64910 | Msa1380250:intron | 40.0% |
| ATTGACATTCCGGATAAGCA+TGG | - | tig0020341:64982-65001 | None:intergenic | 40.0% | |
| CACTCACTGTGATGTTAAAG+TGG | - | tig0020341:65204-65223 | None:intergenic | 40.0% | |
| AGTGTTGTCATGTGTACTGT+AGG | + | tig0020341:65317-65336 | Msa1380250:intron | 40.0% | |
| AACAAGCCGATGTTAGAACA+AGG | + | tig0020341:65373-65392 | Msa1380250:CDS | 40.0% | |
| AACGGACCTTGTTCTAACAT+CGG | - | tig0020341:65382-65401 | None:intergenic | 40.0% | |
| TAGTACAATCAGAAAGTGGG+TGG | - | tig0020341:65605-65624 | None:intergenic | 40.0% | |
| ! | AAGTTTGAAACGGTGGTGAA+TGG | + | tig0020341:65693-65712 | Msa1380250:intron | 40.0% |
| CCGATCATGATTCATGATGA+GGG | - | tig0020341:65792-65811 | None:intergenic | 40.0% | |
| CCCTCATCATGAATCATGAT+CGG | + | tig0020341:65789-65808 | Msa1380250:intron | 40.0% | |
| TCCGATCATGATTCATGATG+AGG | - | tig0020341:65793-65812 | None:intergenic | 40.0% | |
| GAGACATTCTTGATCTCATC+AGG | + | tig0020341:66071-66090 | Msa1380250:intron | 40.0% | |
| CTGCTTACATAGATCTACGA+TGG | - | tig0020341:66599-66618 | None:intergenic | 40.0% | |
| CCAGTTGAAGTTTCTGTTGT+GGG | - | tig0020341:66647-66666 | None:intergenic | 40.0% | |
| ACCAGTTGAAGTTTCTGTTG+TGG | - | tig0020341:66648-66667 | None:intergenic | 40.0% | |
| GTTCTATATTTGAACAGCCC+TGG | - | tig0020341:66674-66693 | None:intergenic | 40.0% | |
| GCCATGTACTTCAAGAAACT+TGG | - | tig0020341:66710-66729 | None:intergenic | 40.0% | |
| TGGCAAAGCTGTAATCTCAA+AGG | - | tig0020341:66952-66971 | None:intergenic | 40.0% | |
| TACAGCTTTGCCATATTGGA+TGG | + | tig0020341:66959-66978 | Msa1380250:intron | 40.0% | |
| ACAGCTTTGCCATATTGGAT+GGG | + | tig0020341:66960-66979 | Msa1380250:intron | 40.0% | |
| CTAAACTTATCTGACTGCCA+TGG | + | tig0020341:67204-67223 | Msa1380250:CDS | 40.0% | |
| TATCCCCTATGAAGTCACTA+AGG | + | tig0020341:67376-67395 | Msa1380250:CDS | 40.0% | |
| GAGATCCTTACTTTCACTAG+AGG | + | tig0020341:67445-67464 | Msa1380250:intron | 40.0% | |
| GCAAAACCATTAGTTGTGGA+TGG | + | tig0020341:67721-67740 | Msa1380250:CDS | 40.0% | |
| AACTCTTGAAGAACAAGTGG+TGG | - | tig0020341:67808-67827 | None:intergenic | 40.0% | |
| GCGAAACTATAAAGGTTGTG+AGG | + | tig0020341:67992-68011 | Msa1380250:CDS | 40.0% | |
| CGTTTCTCTCTACCTAATGT+CGG | + | tig0020341:68015-68034 | Msa1380250:CDS | 40.0% | |
| TTCTGCAGATGAAGCTGATT+TGG | + | tig0020341:68101-68120 | Msa1380250:CDS | 40.0% | |
| TGTAACAACAGTGTCACAGT+AGG | - | tig0020341:68236-68255 | None:intergenic | 40.0% | |
| !! | CTCTCCAATAAAGGTTTTGG+TGG | - | tig0020341:68265-68284 | None:intergenic | 40.0% |
| CACCAAAACCTTTATTGGAG+AGG | + | tig0020341:68263-68282 | Msa1380250:CDS | 40.0% | |
| ! | AGCCTCTCCAATAAAGGTTT+TGG | - | tig0020341:68268-68287 | None:intergenic | 40.0% |
| TTTATTGGAGAGGCTTGCAA+GGG | + | tig0020341:68273-68292 | Msa1380250:CDS | 40.0% | |
| TGACATAAGTTGTACTTGCC+TGG | - | tig0020341:68480-68499 | None:intergenic | 40.0% | |
| AATTTGCCGTTGTGCCAAAT+TGG | + | tig0020341:68596-68615 | Msa1380250:intron | 40.0% | |
| GTTCAACCAATTTGGCACAA+CGG | - | tig0020341:68605-68624 | None:intergenic | 40.0% | |
| CTTTATCTTTAACCCTCTGC+AGG | + | tig0020341:68627-68646 | Msa1380250:intron | 40.0% | |
| ! | ATTTTTCCATACCCTGCAGA+GGG | - | tig0020341:68642-68661 | None:intergenic | 40.0% |
| GCCAAGGATAAAATGCTGAA+TGG | - | tig0020341:68768-68787 | None:intergenic | 40.0% | |
| ! | TTTTATCCTTGGCTTAGCAG+TGG | + | tig0020341:68775-68794 | Msa1380250:three_prime_UTR | 40.0% |
| GAAGAGGAGAAAGTGGTTGT+TGG | + | tig0020341:64535-64554 | Msa1380250:CDS | 45.0% | |
| ! | CAAGCAAAGGGCATATAAGG+TGG | - | tig0020341:64883-64902 | None:intergenic | 45.0% |
| ACATTCCGGATAAGCATGGA+TGG | - | tig0020341:64978-64997 | None:intergenic | 45.0% | |
| ! | TGTTTTCTCGCTGTCATCGA+TGG | + | tig0020341:65441-65460 | Msa1380250:intron | 45.0% |
| ATTTGTCATTCCCAGTTGCC+AGG | + | tig0020341:65527-65546 | Msa1380250:intron | 45.0% | |
| ! | ATCTCACACCACTCTTTTCC+TGG | - | tig0020341:65548-65567 | None:intergenic | 45.0% |
| AGAGTGGTGTGAGATTATCG+AGG | + | tig0020341:65553-65572 | Msa1380250:CDS | 45.0% | |
| TACAATCAGAAAGTGGGTGG+AGG | - | tig0020341:65602-65621 | None:intergenic | 45.0% | |
| ! | GGCTGGATAATCTAGTTTGC+TGG | + | tig0020341:65714-65733 | Msa1380250:intron | 45.0% |
| GTTTCTGTTGTGGGACAAAG+AGG | - | tig0020341:66638-66657 | None:intergenic | 45.0% | |
| CCCACAACAGAAACTTCAAC+TGG | + | tig0020341:66644-66663 | Msa1380250:intron | 45.0% | |
| AAACTTCAACTGGTACGCCA+GGG | + | tig0020341:66654-66673 | Msa1380250:intron | 45.0% | |
| CAGCTTTGCCATATTGGATG+GGG | + | tig0020341:66961-66980 | Msa1380250:intron | 45.0% | |
| AGGGTCAAGGATGGTTACTT+CGG | - | tig0020341:67127-67146 | None:intergenic | 45.0% | |
| ! | AGTGCTGAATTGCATCTGGA+GGG | - | tig0020341:67146-67165 | None:intergenic | 45.0% |
| !! | AAGTGCTGAATTGCATCTGG+AGG | - | tig0020341:67147-67166 | None:intergenic | 45.0% |
| !! | AGCAAGTGCTGAATTGCATC+TGG | - | tig0020341:67150-67169 | None:intergenic | 45.0% |
| CAGCCTTAGTGACTTCATAG+GGG | - | tig0020341:67382-67401 | None:intergenic | 45.0% | |
| CCAGCCTTAGTGACTTCATA+GGG | - | tig0020341:67383-67402 | None:intergenic | 45.0% | |
| TCCAGCCTTAGTGACTTCAT+AGG | - | tig0020341:67384-67403 | None:intergenic | 45.0% | |
| GCTGGAATGAAGTTACCGTT+AGG | + | tig0020341:67398-67417 | Msa1380250:CDS | 45.0% | |
| TTTAATCTGTTTGGGGGAGG+TGG | + | tig0020341:67925-67944 | Msa1380250:intron | 45.0% | |
| TTAATCTGTTTGGGGGAGGT+GGG | + | tig0020341:67926-67945 | Msa1380250:intron | 45.0% | |
| TGTCGGCAAACATGAATTGC+TGG | + | tig0020341:68032-68051 | Msa1380250:CDS | 45.0% | |
| GTCGGCAAACATGAATTGCT+GGG | + | tig0020341:68033-68052 | Msa1380250:CDS | 45.0% | |
| !! | CATGAATTGCTGGGTGTTGA+TGG | + | tig0020341:68042-68061 | Msa1380250:CDS | 45.0% |
| CAAGCTTCACCCGCAATATT+TGG | - | tig0020341:68129-68148 | None:intergenic | 45.0% | |
| CTTGCAAGCCTCTCCAATAA+AGG | - | tig0020341:68274-68293 | None:intergenic | 45.0% | |
| CTTTATTGGAGAGGCTTGCA+AGG | + | tig0020341:68272-68291 | Msa1380250:CDS | 45.0% | |
| GTAAGCATACCAGTCTACGA+CGG | - | tig0020341:68303-68322 | None:intergenic | 45.0% | |
| ! | CATTTTTCCATACCCTGCAG+AGG | - | tig0020341:68643-68662 | None:intergenic | 45.0% |
| AAGAAACCACTGCTAAGCCA+AGG | - | tig0020341:68784-68803 | None:intergenic | 45.0% | |
| GTTGGCGAGTGAGTTAGAAA+GGG | - | tig0020341:68911-68930 | None:intergenic | 45.0% | |
| AGTTGGCGAGTGAGTTAGAA+AGG | - | tig0020341:68912-68931 | None:intergenic | 45.0% | |
| ! | CCACTCTTTTCCTGGCAACT+GGG | - | tig0020341:65540-65559 | None:intergenic | 50.0% |
| ! | ACCACTCTTTTCCTGGCAAC+TGG | - | tig0020341:65541-65560 | None:intergenic | 50.0% |
| AATCAGAAAGTGGGTGGAGG+TGG | - | tig0020341:65599-65618 | None:intergenic | 50.0% | |
| TTGAAACGGTGGTGAATGGC+TGG | + | tig0020341:65697-65716 | Msa1380250:intron | 50.0% | |
| !! | AGCAATGCTGCCGATTCCAT+AGG | + | tig0020341:65944-65963 | Msa1380250:intron | 50.0% |
| TCGTGAATCGCAGAAAGTGG+TGG | - | tig0020341:66357-66376 | None:intergenic | 50.0% | |
| CAGTCGTGAATCGCAGAAAG+TGG | - | tig0020341:66360-66379 | None:intergenic | 50.0% | |
| GAACACTGGACAGCTTATGG+AGG | - | tig0020341:66552-66571 | None:intergenic | 50.0% | |
| TGTCCAGTGTTCGCCATGAT+GGG | + | tig0020341:66560-66579 | Msa1380250:intron | 50.0% | |
| GAAACTTCAACTGGTACGCC+AGG | + | tig0020341:66653-66672 | Msa1380250:intron | 50.0% | |
| TTTGCCATATTGGATGGGGC+TGG | + | tig0020341:66965-66984 | Msa1380250:intron | 50.0% | |
| ATCACCAGCCCCATCCAATA+TGG | - | tig0020341:66972-66991 | None:intergenic | 50.0% | |
| GGGTCAAGGATGGTTACTTC+GGG | - | tig0020341:67126-67145 | None:intergenic | 50.0% | |
| GAATTGCATCTGGAGGGTCA+AGG | - | tig0020341:67140-67159 | None:intergenic | 50.0% | |
| ! | GGTTGGTGTTCCACAACAGT+TGG | + | tig0020341:67325-67344 | Msa1380250:CDS | 50.0% |
| CCCTATGAAGTCACTAAGGC+TGG | + | tig0020341:67380-67399 | Msa1380250:CDS | 50.0% | |
| GCACTCCCATCCACAACTAA+TGG | - | tig0020341:67730-67749 | None:intergenic | 50.0% | |
| TAATCTGTTTGGGGGAGGTG+GGG | + | tig0020341:67927-67946 | Msa1380250:intron | 50.0% | |
| GCTGCTGCACATGAAACTCT+TGG | - | tig0020341:68081-68100 | None:intergenic | 50.0% | |
| TGAACAAGTGGAGTCCCTAG+AGG | - | tig0020341:68392-68411 | None:intergenic | 50.0% | |
| GATACGGGAACATGGGACAA+AGG | + | tig0020341:68422-68441 | Msa1380250:CDS | 50.0% | |
| CTTTAACCCTCTGCAGGGTA+TGG | + | tig0020341:68633-68652 | Msa1380250:intron | 50.0% | |
| CCCAGTTGCCAGGAAAAGAG+TGG | + | tig0020341:65537-65556 | Msa1380250:intron | 55.0% | |
| AGCTTATGGAGGCAGGACTG+CGG | - | tig0020341:66541-66560 | None:intergenic | 55.0% | |
| ACTGGACAGCTTATGGAGGC+AGG | - | tig0020341:66548-66567 | None:intergenic | 55.0% | |
| GGCGAACACTGGACAGCTTA+TGG | - | tig0020341:66555-66574 | None:intergenic | 55.0% | |
| CTGTCCAGTGTTCGCCATGA+TGG | + | tig0020341:66559-66578 | Msa1380250:intron | 55.0% | |
| GTCCAGTGTTCGCCATGATG+GGG | + | tig0020341:66561-66580 | Msa1380250:intron | 55.0% | |
| TCCAGTGTTCGCCATGATGG+GGG | + | tig0020341:66562-66581 | Msa1380250:intron | 55.0% | |
| TGCATCTGGAGGGTCAAGGA+TGG | - | tig0020341:67136-67155 | None:intergenic | 55.0% | |
| AGCATACCAGTCTACGACGG+AGG | - | tig0020341:68300-68319 | None:intergenic | 55.0% | |
| ! | TGGAGTCCCTAGAGGTGTGA+TGG | - | tig0020341:68384-68403 | None:intergenic | 55.0% |
| CAGAAAGTGGGTGGAGGTGG+AGG | - | tig0020341:65596-65615 | None:intergenic | 60.0% | |
| GCTTATGGAGGCAGGACTGC+GGG | - | tig0020341:66540-66559 | None:intergenic | 60.0% | |
| ACCCCCATCATGGCGAACAC+TGG | - | tig0020341:66566-66585 | None:intergenic | 60.0% | |
| ! | AGTGTTCGCCATGATGGGGG+TGG | + | tig0020341:66565-66584 | Msa1380250:intron | 60.0% |
| ! | GTGTTCGCCATGATGGGGGT+GGG | + | tig0020341:66566-66585 | Msa1380250:intron | 60.0% |
| ! | TGTTCGCCATGATGGGGGTG+GGG | + | tig0020341:66567-66586 | Msa1380250:intron | 60.0% |
| AAGGGACCTCCGTCGTAGAC+TGG | + | tig0020341:68291-68310 | Msa1380250:CDS | 60.0% | |
| GGAGGTGGGGTTTGCACTGC+AGG | + | tig0020341:67940-67959 | Msa1380250:intron | 65.0% | |
| GGTGGGGTTTGCACTGCAGG+TGG | + | tig0020341:67943-67962 | Msa1380250:intron | 65.0% | |
| ! | CGCCATGATGGGGGTGGGGT+CGG | + | tig0020341:66571-66590 | Msa1380250:intron | 70.0% |
| GTCCGACCCCACCCCCATCA+TGG | - | tig0020341:66576-66595 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020341 | gene | 64265 | 69008 | 64265 | ID=Msa1380250;Name=Msa1380250 |
| tig0020341 | mRNA | 64265 | 69008 | 64265 | ID=Msa1380250-mRNA-1;Parent=Msa1380250;Name=Msa1380250-mRNA-1;_AED=0.15;_eAED=0.16;_QI=240|0.88|0.9|1|1|1|10|268|349 |
| tig0020341 | exon | 64265 | 64620 | 64265 | ID=Msa1380250-mRNA-1:exon:6985;Parent=Msa1380250-mRNA-1 |
| tig0020341 | exon | 65339 | 65420 | 65339 | ID=Msa1380250-mRNA-1:exon:6986;Parent=Msa1380250-mRNA-1 |
| tig0020341 | exon | 65542 | 65574 | 65542 | ID=Msa1380250-mRNA-1:exon:6987;Parent=Msa1380250-mRNA-1 |
| tig0020341 | exon | 67105 | 67225 | 67105 | ID=Msa1380250-mRNA-1:exon:6988;Parent=Msa1380250-mRNA-1 |
| tig0020341 | exon | 67321 | 67419 | 67321 | ID=Msa1380250-mRNA-1:exon:6989;Parent=Msa1380250-mRNA-1 |
| tig0020341 | exon | 67719 | 67838 | 67719 | ID=Msa1380250-mRNA-1:exon:6990;Parent=Msa1380250-mRNA-1 |
| tig0020341 | exon | 67962 | 68138 | 67962 | ID=Msa1380250-mRNA-1:exon:6991;Parent=Msa1380250-mRNA-1 |
| tig0020341 | exon | 68257 | 68312 | 68257 | ID=Msa1380250-mRNA-1:exon:6992;Parent=Msa1380250-mRNA-1 |
| tig0020341 | exon | 68396 | 68549 | 68396 | ID=Msa1380250-mRNA-1:exon:6993;Parent=Msa1380250-mRNA-1 |
| tig0020341 | exon | 68649 | 69008 | 68649 | ID=Msa1380250-mRNA-1:exon:6994;Parent=Msa1380250-mRNA-1 |
| tig0020341 | five_prime_UTR | 64265 | 64504 | 64265 | ID=Msa1380250-mRNA-1:five_prime_utr;Parent=Msa1380250-mRNA-1 |
| tig0020341 | CDS | 64505 | 64620 | 64505 | ID=Msa1380250-mRNA-1:cds;Parent=Msa1380250-mRNA-1 |
| tig0020341 | CDS | 65339 | 65420 | 65339 | ID=Msa1380250-mRNA-1:cds;Parent=Msa1380250-mRNA-1 |
| tig0020341 | CDS | 65542 | 65574 | 65542 | ID=Msa1380250-mRNA-1:cds;Parent=Msa1380250-mRNA-1 |
| tig0020341 | CDS | 67105 | 67225 | 67105 | ID=Msa1380250-mRNA-1:cds;Parent=Msa1380250-mRNA-1 |
| tig0020341 | CDS | 67321 | 67419 | 67321 | ID=Msa1380250-mRNA-1:cds;Parent=Msa1380250-mRNA-1 |
| tig0020341 | CDS | 67719 | 67838 | 67719 | ID=Msa1380250-mRNA-1:cds;Parent=Msa1380250-mRNA-1 |
| tig0020341 | CDS | 67962 | 68138 | 67962 | ID=Msa1380250-mRNA-1:cds;Parent=Msa1380250-mRNA-1 |
| tig0020341 | CDS | 68257 | 68312 | 68257 | ID=Msa1380250-mRNA-1:cds;Parent=Msa1380250-mRNA-1 |
| tig0020341 | CDS | 68396 | 68549 | 68396 | ID=Msa1380250-mRNA-1:cds;Parent=Msa1380250-mRNA-1 |
| tig0020341 | CDS | 68649 | 68740 | 68649 | ID=Msa1380250-mRNA-1:cds;Parent=Msa1380250-mRNA-1 |
| tig0020341 | three_prime_UTR | 68741 | 69008 | 68741 | ID=Msa1380250-mRNA-1:three_prime_utr;Parent=Msa1380250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
